Query 003992
Match_columns 781
No_of_seqs 418 out of 3707
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 6E-202 1E-206 1703.5 64.6 772 4-781 3-794 (794)
2 PLN02846 digalactosyldiacylgly 100.0 1.5E-78 3.3E-83 683.7 41.7 456 307-772 2-461 (462)
3 PLN02871 UDP-sulfoquinovose:DA 100.0 4.4E-36 9.5E-41 341.9 33.7 356 307-700 56-437 (465)
4 PRK10307 putative glycosyl tra 100.0 8.5E-36 1.8E-40 333.1 34.4 367 310-700 1-410 (412)
5 cd03796 GT1_PIG-A_like This fa 100.0 8.4E-36 1.8E-40 332.1 32.3 346 311-700 1-370 (398)
6 TIGR03449 mycothiol_MshA UDP-N 100.0 8.4E-34 1.8E-38 315.1 31.9 357 312-699 1-403 (405)
7 cd04962 GT1_like_5 This family 100.0 3.6E-33 7.7E-38 303.9 29.7 349 310-694 1-369 (371)
8 cd03814 GT1_like_2 This family 100.0 1.8E-32 4E-37 293.1 32.9 347 311-694 1-364 (364)
9 PLN02939 transferase, transfer 100.0 4.2E-33 9.1E-38 330.5 28.6 508 157-701 351-970 (977)
10 PRK00654 glgA glycogen synthas 100.0 2.9E-33 6.3E-38 319.2 26.0 373 310-699 1-464 (466)
11 cd03817 GT1_UGDG_like This fam 100.0 4.7E-32 1E-36 289.4 32.4 351 311-694 1-372 (374)
12 cd03792 GT1_Trehalose_phosphor 100.0 4.3E-32 9.3E-37 299.0 29.3 344 311-694 1-370 (372)
13 TIGR02095 glgA glycogen/starch 100.0 5.1E-32 1.1E-36 309.1 28.7 373 310-694 1-471 (473)
14 TIGR02149 glgA_Coryne glycogen 100.0 8.8E-32 1.9E-36 295.9 29.5 348 310-694 1-385 (388)
15 TIGR02472 sucr_P_syn_N sucrose 100.0 1.4E-31 3E-36 303.0 31.0 354 320-693 22-438 (439)
16 TIGR03088 stp2 sugar transfera 100.0 2.4E-31 5.2E-36 292.1 31.3 344 309-694 1-371 (374)
17 PRK15427 colanic acid biosynth 100.0 1.3E-31 2.8E-36 300.8 26.7 265 412-694 110-404 (406)
18 cd03805 GT1_ALG2_like This fam 100.0 3E-31 6.5E-36 292.1 28.9 350 310-689 1-392 (392)
19 cd03821 GT1_Bme6_like This fam 100.0 8.3E-31 1.8E-35 279.3 30.9 354 311-691 1-375 (375)
20 PLN02316 synthase/transferase 100.0 3E-31 6.4E-36 319.7 29.3 359 307-694 585-1032(1036)
21 cd03802 GT1_AviGT4_like This f 100.0 5.4E-31 1.2E-35 282.0 28.2 320 310-694 1-335 (335)
22 cd04955 GT1_like_6 This family 100.0 1.2E-30 2.6E-35 281.9 30.8 342 311-694 1-363 (363)
23 PRK14099 glycogen synthase; Pr 100.0 2.9E-31 6.3E-36 304.3 27.0 278 417-700 130-481 (485)
24 TIGR02468 sucrsPsyn_pln sucros 100.0 1.5E-30 3.3E-35 312.8 33.9 390 296-702 160-675 (1050)
25 cd03801 GT1_YqgM_like This fam 100.0 1.4E-30 3.1E-35 274.4 29.6 352 311-694 1-374 (374)
26 PRK14098 glycogen synthase; Pr 100.0 5.8E-31 1.3E-35 302.1 27.0 273 419-699 140-487 (489)
27 cd04951 GT1_WbdM_like This fam 100.0 5.3E-30 1.1E-34 276.2 32.7 339 311-694 1-359 (360)
28 cd03812 GT1_CapH_like This fam 100.0 1.5E-30 3.2E-35 281.1 27.1 325 311-674 1-338 (358)
29 cd03820 GT1_amsD_like This fam 100.0 9.3E-30 2E-34 267.9 32.1 329 311-690 1-347 (348)
30 cd03794 GT1_wbuB_like This fam 100.0 3.6E-30 7.7E-35 275.2 29.2 357 311-690 1-394 (394)
31 cd03822 GT1_ecORF704_like This 100.0 6.5E-30 1.4E-34 274.2 30.3 337 311-694 1-366 (366)
32 KOG1111 N-acetylglucosaminyltr 100.0 6E-31 1.3E-35 279.3 21.7 348 310-702 1-371 (426)
33 cd03807 GT1_WbnK_like This fam 100.0 6.6E-30 1.4E-34 271.4 29.9 343 311-694 1-365 (365)
34 cd03795 GT1_like_4 This family 100.0 4.9E-30 1.1E-34 276.2 29.0 332 311-686 1-357 (357)
35 cd05844 GT1_like_7 Glycosyltra 100.0 7.2E-30 1.6E-34 277.6 29.3 266 412-691 74-366 (367)
36 cd03816 GT1_ALG1_like This fam 100.0 1.4E-29 3.1E-34 284.8 31.5 351 308-690 2-411 (415)
37 cd03800 GT1_Sucrose_synthase T 100.0 7.5E-30 1.6E-34 279.6 28.3 350 311-690 8-397 (398)
38 cd03791 GT1_Glycogen_synthase_ 100.0 1.2E-30 2.6E-35 296.9 22.6 373 311-694 1-475 (476)
39 cd03809 GT1_mtfB_like This fam 100.0 3.8E-30 8.1E-35 275.9 24.2 344 311-691 1-365 (365)
40 PRK09922 UDP-D-galactose:(gluc 100.0 1.6E-29 3.5E-34 278.0 29.4 324 310-694 1-354 (359)
41 cd03798 GT1_wlbH_like This fam 100.0 4.5E-29 9.8E-34 264.5 30.8 351 312-694 1-375 (377)
42 PRK15484 lipopolysaccharide 1, 100.0 5.4E-29 1.2E-33 276.9 31.7 251 417-694 96-376 (380)
43 PRK15179 Vi polysaccharide bio 100.0 6.9E-29 1.5E-33 293.1 34.1 277 410-694 390-692 (694)
44 cd03818 GT1_ExpC_like This fam 100.0 2.3E-29 5E-34 280.0 27.2 208 484-691 156-396 (396)
45 TIGR03087 stp1 sugar transfera 100.0 6.3E-29 1.4E-33 276.9 29.1 271 411-694 95-395 (397)
46 cd03825 GT1_wcfI_like This fam 100.0 7.5E-29 1.6E-33 267.7 27.8 317 310-694 1-363 (365)
47 cd03799 GT1_amsK_like This is 100.0 1.5E-28 3.2E-33 264.5 28.1 327 311-689 1-355 (355)
48 cd03813 GT1_like_3 This family 100.0 2.9E-29 6.2E-34 287.1 23.7 266 419-694 172-475 (475)
49 cd03823 GT1_ExpE7_like This fa 100.0 1.5E-28 3.2E-33 262.0 26.3 340 311-694 1-358 (359)
50 TIGR02470 sucr_synth sucrose s 100.0 9.3E-28 2E-32 284.0 34.6 271 419-694 384-746 (784)
51 cd03808 GT1_cap1E_like This fa 100.0 5.3E-28 1.2E-32 255.6 28.4 333 311-690 1-358 (359)
52 cd03811 GT1_WabH_like This fam 100.0 9.6E-28 2.1E-32 252.5 29.7 322 311-674 1-339 (353)
53 cd03819 GT1_WavL_like This fam 100.0 4.6E-28 1E-32 261.4 27.3 314 324-684 10-354 (355)
54 TIGR02918 accessory Sec system 100.0 5.9E-28 1.3E-32 277.7 24.4 265 412-694 203-498 (500)
55 PLN00142 sucrose synthase 100.0 3.7E-27 8E-32 279.0 28.7 270 419-694 407-769 (815)
56 PRK15490 Vi polysaccharide bio 100.0 2.5E-27 5.5E-32 270.1 23.8 276 410-694 270-574 (578)
57 PLN02275 transferase, transfer 100.0 3.9E-26 8.4E-31 253.1 32.4 244 416-665 96-371 (371)
58 PRK10125 putative glycosyl tra 100.0 1.5E-26 3.2E-31 260.0 29.2 347 310-694 1-403 (405)
59 PLN02949 transferase, transfer 100.0 7.5E-26 1.6E-30 258.0 32.8 209 484-701 220-460 (463)
60 cd04946 GT1_AmsK_like This fam 99.9 5.9E-26 1.3E-30 254.9 27.4 254 418-690 125-406 (407)
61 cd03804 GT1_wbaZ_like This fam 99.9 8.9E-26 1.9E-30 245.9 27.4 251 412-689 75-350 (351)
62 cd03806 GT1_ALG11_like This fa 99.9 4E-26 8.6E-31 257.4 24.1 257 416-686 103-417 (419)
63 cd04949 GT1_gtfA_like This fam 99.9 6.2E-26 1.3E-30 248.8 20.2 257 418-689 97-372 (372)
64 PHA01630 putative group 1 glyc 99.9 2.5E-24 5.4E-29 235.9 21.9 221 445-694 68-329 (331)
65 PHA01633 putative glycosyl tra 99.9 3.1E-23 6.7E-28 226.8 25.7 220 447-691 72-335 (335)
66 PRK13609 diacylglycerol glucos 99.9 2.9E-22 6.2E-27 222.0 20.4 255 410-694 94-370 (380)
67 cd03793 GT1_Glycogen_synthase_ 99.9 1.6E-21 3.5E-26 222.9 22.9 217 476-694 219-585 (590)
68 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.6E-22 3.5E-27 230.8 13.2 261 420-692 131-458 (460)
69 PRK05749 3-deoxy-D-manno-octul 99.9 6E-21 1.3E-25 214.9 24.7 270 410-694 114-418 (425)
70 PRK00726 murG undecaprenyldiph 99.9 4.4E-21 9.6E-26 210.4 22.7 252 410-692 81-354 (357)
71 cd03785 GT1_MurG MurG is an N- 99.9 1.2E-20 2.6E-25 205.3 22.6 235 410-674 79-331 (350)
72 PRK13608 diacylglycerol glucos 99.9 1.7E-20 3.6E-25 209.8 20.5 255 410-694 94-370 (391)
73 TIGR01133 murG undecaprenyldip 99.9 7.7E-20 1.7E-24 198.8 23.9 249 410-690 80-345 (348)
74 cd04950 GT1_like_1 Glycosyltra 99.8 3.2E-20 7E-25 205.9 20.9 256 418-694 100-370 (373)
75 PLN02605 monogalactosyldiacylg 99.8 9E-21 1.9E-25 211.1 16.3 257 410-692 90-378 (382)
76 TIGR02400 trehalose_OtsA alpha 99.8 6.1E-20 1.3E-24 209.3 21.0 260 421-693 128-454 (456)
77 cd01635 Glycosyltransferase_GT 99.8 6.9E-19 1.5E-23 175.9 24.6 219 312-648 1-226 (229)
78 COG0297 GlgA Glycogen synthase 99.8 3.9E-19 8.4E-24 202.2 22.2 213 484-700 208-480 (487)
79 PLN03063 alpha,alpha-trehalose 99.8 8.4E-20 1.8E-24 220.1 13.8 268 421-699 148-479 (797)
80 PF00534 Glycos_transf_1: Glyc 99.8 3.7E-20 8E-25 181.5 8.2 153 522-674 5-165 (172)
81 TIGR00236 wecB UDP-N-acetylglu 99.7 5.7E-17 1.2E-21 178.9 19.9 266 410-693 76-365 (365)
82 PRK14501 putative bifunctional 99.7 1.8E-17 3.9E-22 199.3 16.4 192 502-699 230-464 (726)
83 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 1.1E-16 2.4E-21 175.3 20.7 263 410-692 78-361 (363)
84 COG0438 RfaG Glycosyltransfera 99.7 9.8E-16 2.1E-20 158.7 23.7 203 485-694 151-375 (381)
85 PRK00025 lpxB lipid-A-disaccha 99.7 1.4E-15 3.1E-20 168.1 21.6 243 409-674 74-348 (380)
86 KOG0853 Glycosyltransferase [C 99.6 3.6E-14 7.7E-19 160.2 22.2 213 484-699 209-469 (495)
87 PF13692 Glyco_trans_1_4: Glyc 99.6 1.8E-15 3.8E-20 142.7 8.0 130 533-667 3-135 (135)
88 PRK09814 beta-1,6-galactofuran 99.6 3.1E-14 6.7E-19 156.1 17.7 219 412-665 55-298 (333)
89 TIGR02398 gluc_glyc_Psyn gluco 99.6 9.5E-14 2.1E-18 158.9 21.8 190 502-694 250-481 (487)
90 TIGR00215 lpxB lipid-A-disacch 99.5 1.9E-13 4.2E-18 153.1 16.0 236 410-668 79-348 (385)
91 PLN03064 alpha,alpha-trehalose 99.5 7.1E-13 1.5E-17 160.6 15.9 188 504-694 330-560 (934)
92 KOG1387 Glycosyltransferase [C 99.4 1.3E-11 2.9E-16 131.7 22.7 268 414-694 144-457 (465)
93 TIGR02094 more_P_ylases alpha- 99.3 2.8E-10 6.1E-15 133.9 24.2 166 529-694 386-599 (601)
94 TIGR03713 acc_sec_asp1 accesso 99.3 3.2E-11 6.9E-16 139.9 13.7 157 532-692 319-518 (519)
95 KOG2941 Beta-1,4-mannosyltrans 99.2 4.1E-09 9E-14 113.1 26.4 252 415-669 98-407 (444)
96 PF05693 Glycogen_syn: Glycoge 99.1 2.2E-09 4.7E-14 123.5 15.3 98 600-699 465-583 (633)
97 COG0707 MurG UDP-N-acetylgluco 99.0 8.2E-08 1.8E-12 106.7 23.4 253 410-694 81-352 (357)
98 PF13439 Glyco_transf_4: Glyco 99.0 1.2E-09 2.5E-14 105.6 7.8 168 314-514 2-176 (177)
99 PRK12446 undecaprenyldiphospho 98.9 4.7E-07 1E-11 100.6 26.0 249 410-693 81-349 (352)
100 TIGR02919 accessory Sec system 98.9 8.7E-09 1.9E-13 117.3 12.4 130 533-671 283-415 (438)
101 PF13524 Glyco_trans_1_2: Glyc 98.9 1.5E-09 3.3E-14 96.6 4.5 85 607-691 1-92 (92)
102 cd04299 GT1_Glycogen_Phosphory 98.9 1.2E-07 2.6E-12 114.2 20.7 166 529-694 475-688 (778)
103 TIGR03590 PseG pseudaminic aci 98.8 5.3E-07 1.1E-11 97.1 22.2 255 311-636 1-268 (279)
104 COG1519 KdtA 3-deoxy-D-manno-o 98.7 8.6E-07 1.9E-11 98.7 20.0 248 411-674 114-393 (419)
105 cd03784 GT1_Gtf_like This fami 98.6 1.9E-06 4.1E-11 96.4 20.0 121 532-668 240-373 (401)
106 TIGR03492 conserved hypothetic 98.5 1.7E-06 3.7E-11 97.7 16.0 183 478-674 155-371 (396)
107 PF13579 Glyco_trans_4_4: Glyc 98.5 6.8E-07 1.5E-11 84.8 10.2 149 324-508 1-160 (160)
108 PF00982 Glyco_transf_20: Glyc 98.5 3.2E-06 6.9E-11 97.4 16.1 261 420-693 141-472 (474)
109 PRK10117 trehalose-6-phosphate 98.4 7.2E-06 1.6E-10 94.0 17.3 189 503-694 222-452 (474)
110 PF02684 LpxB: Lipid-A-disacch 98.3 1.1E-05 2.4E-10 90.3 15.5 238 410-670 72-343 (373)
111 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 2.3E-05 5.1E-10 87.6 16.8 258 410-692 83-364 (365)
112 PLN02205 alpha,alpha-trehalose 98.2 2.5E-05 5.4E-10 95.9 16.6 190 504-694 304-550 (854)
113 TIGR01426 MGT glycosyltransfer 98.2 0.0012 2.7E-08 73.9 28.0 128 534-674 228-366 (392)
114 PF13844 Glyco_transf_41: Glyc 98.1 1.4E-05 3.1E-10 91.3 12.2 171 521-694 274-465 (468)
115 PF04007 DUF354: Protein of un 98.1 0.00024 5.2E-09 78.6 21.3 218 409-666 72-309 (335)
116 PF13528 Glyco_trans_1_3: Glyc 98.1 6.7E-05 1.4E-09 81.2 15.4 191 410-638 84-280 (318)
117 COG0763 LpxB Lipid A disacchar 98.1 2.6E-05 5.5E-10 86.3 11.7 242 410-672 75-349 (381)
118 COG0380 OtsA Trehalose-6-phosp 98.0 0.0005 1.1E-08 79.0 20.6 188 504-694 248-478 (486)
119 PHA03392 egt ecdysteroid UDP-g 98.0 0.00072 1.6E-08 79.0 22.1 126 533-674 298-439 (507)
120 COG3914 Spy Predicted O-linked 97.9 0.00015 3.2E-09 83.4 14.1 175 520-699 418-615 (620)
121 COG0381 WecB UDP-N-acetylgluco 97.8 0.0024 5.3E-08 71.1 22.1 265 410-694 82-369 (383)
122 PRK01021 lpxB lipid-A-disaccha 97.8 0.00021 4.5E-09 83.9 14.2 199 410-634 300-513 (608)
123 PF13477 Glyco_trans_4_2: Glyc 97.8 0.0003 6.6E-09 66.6 12.0 137 311-492 1-139 (139)
124 PF02350 Epimerase_2: UDP-N-ac 97.7 6.9E-05 1.5E-09 83.3 6.9 265 410-692 57-344 (346)
125 TIGR00661 MJ1255 conserved hyp 97.6 0.003 6.5E-08 69.2 18.5 190 410-638 83-277 (321)
126 PF09314 DUF1972: Domain of un 97.5 0.0026 5.5E-08 64.8 15.4 171 309-510 1-185 (185)
127 COG4641 Uncharacterized protei 97.2 0.014 3E-07 64.9 16.8 261 412-694 69-360 (373)
128 COG1817 Uncharacterized protei 96.9 0.17 3.8E-06 55.1 21.3 222 409-669 73-316 (346)
129 COG3980 spsG Spore coat polysa 96.6 0.12 2.7E-06 55.5 17.8 130 532-674 159-300 (318)
130 PRK14089 ipid-A-disaccharide s 96.6 0.015 3.2E-07 64.9 11.4 180 419-635 75-261 (347)
131 PF08323 Glyco_transf_5: Starc 96.6 0.0035 7.5E-08 66.4 6.0 42 311-353 1-44 (245)
132 PF04101 Glyco_tran_28_C: Glyc 96.5 0.00011 2.5E-09 72.4 -5.8 103 567-674 36-151 (167)
133 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.36 7.8E-06 53.2 17.2 149 484-638 97-259 (311)
134 COG3660 Predicted nucleoside-d 95.7 1.3 2.9E-05 47.4 19.7 147 485-637 110-274 (329)
135 COG1819 Glycosyl transferases, 95.2 0.13 2.8E-06 58.7 11.1 131 530-674 235-375 (406)
136 KOG3742 Glycogen synthase [Car 93.8 0.049 1.1E-06 61.3 3.5 94 598-692 494-609 (692)
137 COG4671 Predicted glycosyl tra 93.6 5.8 0.00012 44.4 18.6 234 412-668 98-366 (400)
138 PF05159 Capsule_synth: Capsul 93.1 1 2.2E-05 48.1 12.1 98 532-636 117-226 (269)
139 PLN03004 UDP-glycosyltransfera 92.7 0.41 8.9E-06 55.4 9.0 123 534-668 273-425 (451)
140 PLN02448 UDP-glycosyltransfera 92.1 1.3 2.8E-05 51.4 12.1 121 534-668 277-416 (459)
141 PRK02797 4-alpha-L-fucosyltran 91.7 25 0.00053 39.0 23.2 259 412-694 31-315 (322)
142 PLN02670 transferase, transfer 91.6 2.3 5E-05 49.6 13.4 148 535-694 282-464 (472)
143 PF07429 Glyco_transf_56: 4-al 90.9 16 0.00035 40.9 18.1 103 532-637 184-298 (360)
144 cd03789 GT1_LPS_heptosyltransf 90.8 1.2 2.5E-05 47.7 9.3 85 547-638 139-227 (279)
145 PF00201 UDPGT: UDP-glucoronos 90.5 1.2 2.7E-05 51.6 9.9 122 536-671 281-413 (500)
146 TIGR02193 heptsyl_trn_I lipopo 89.1 6 0.00013 43.0 13.4 126 532-665 180-319 (319)
147 PLN02562 UDP-glycosyltransfera 88.3 2.1 4.6E-05 49.5 9.6 124 533-669 275-415 (448)
148 PLN03007 UDP-glucosyltransfera 87.6 5.6 0.00012 46.5 12.5 75 589-668 347-441 (482)
149 PF01075 Glyco_transf_9: Glyco 87.3 3.4 7.3E-05 43.0 9.6 99 531-636 105-210 (247)
150 PF04464 Glyphos_transf: CDP-G 87.2 1.1 2.4E-05 49.9 6.2 179 484-670 134-339 (369)
151 TIGR02195 heptsyl_trn_II lipop 87.2 4 8.6E-05 44.8 10.5 107 524-637 166-279 (334)
152 TIGR03609 S_layer_CsaB polysac 85.2 39 0.00084 36.5 16.8 84 546-635 189-276 (298)
153 PLN02764 glycosyltransferase f 84.9 9.4 0.0002 44.4 12.4 75 589-668 319-408 (453)
154 PLN02992 coniferyl-alcohol glu 84.0 10 0.00022 44.5 12.2 75 589-668 340-428 (481)
155 COG0859 RfaF ADP-heptose:LPS h 83.7 4.9 0.00011 44.5 9.2 98 532-636 176-278 (334)
156 PLN02208 glycosyltransferase f 83.1 15 0.00033 42.5 13.1 78 589-669 313-403 (442)
157 PLN00414 glycosyltransferase f 83.0 11 0.00023 43.8 11.9 86 576-668 303-403 (446)
158 PRK10017 colanic acid biosynth 82.9 99 0.0021 35.8 20.9 241 411-672 110-397 (426)
159 PRK10964 ADP-heptose:LPS hepto 82.5 19 0.0004 39.4 13.0 96 536-639 183-283 (322)
160 PLN02863 UDP-glucoronosyl/UDP- 82.0 16 0.00035 42.7 12.9 73 589-666 345-432 (477)
161 PLN00164 glucosyltransferase; 82.0 19 0.00042 42.1 13.6 76 589-669 341-433 (480)
162 PF10087 DUF2325: Uncharacteri 81.6 5.5 0.00012 36.1 7.1 73 566-638 2-85 (97)
163 PLN02167 UDP-glycosyltransfera 80.5 19 0.00041 42.0 12.8 122 534-668 283-435 (475)
164 PLN02554 UDP-glycosyltransfera 80.3 4.5 9.9E-05 47.2 7.7 73 589-666 344-439 (481)
165 PLN02410 UDP-glucoronosyl/UDP- 80.1 13 0.00028 43.2 11.2 76 589-669 326-412 (451)
166 PLN02173 UDP-glucosyl transfer 80.0 12 0.00026 43.4 10.9 78 589-669 319-410 (449)
167 PF06925 MGDG_synth: Monogalac 77.0 4.3 9.3E-05 40.3 5.3 69 410-497 79-150 (169)
168 PLN02210 UDP-glucosyl transfer 76.0 25 0.00054 40.9 11.9 74 591-669 328-417 (456)
169 PF11440 AGT: DNA alpha-glucos 75.9 89 0.0019 34.3 14.8 234 412-667 55-353 (355)
170 PRK10422 lipopolysaccharide co 75.8 14 0.00031 41.0 9.6 100 532-638 184-291 (352)
171 PRK10916 ADP-heptose:LPS hepto 75.5 35 0.00075 37.8 12.6 98 533-637 182-289 (348)
172 PF15024 Glyco_transf_18: Glyc 72.5 23 0.00049 42.1 10.3 147 532-694 277-454 (559)
173 PF12000 Glyco_trans_4_3: Gkyc 72.1 7.1 0.00015 39.5 5.5 91 418-514 64-170 (171)
174 PLN02207 UDP-glycosyltransfera 70.9 28 0.0006 40.7 10.7 120 535-666 279-425 (468)
175 PLN02534 UDP-glycosyltransfera 70.3 69 0.0015 37.8 13.9 73 589-666 346-443 (491)
176 TIGR02201 heptsyl_trn_III lipo 69.2 24 0.00053 38.8 9.4 98 533-637 183-288 (344)
177 PRK14986 glycogen phosphorylas 68.4 12 0.00026 46.4 7.2 131 529-659 540-702 (815)
178 PLN02152 indole-3-acetate beta 66.7 61 0.0013 37.8 12.3 128 534-668 264-418 (455)
179 COG0058 GlgP Glucan phosphoryl 65.4 19 0.00041 44.2 8.0 123 530-652 485-629 (750)
180 PLN03015 UDP-glucosyl transfer 63.5 1.2E+02 0.0025 35.7 13.8 75 589-666 337-425 (470)
181 PF00343 Phosphorylase: Carboh 63.4 42 0.00091 41.2 10.4 129 529-657 441-601 (713)
182 PLN02555 limonoid glucosyltran 63.0 50 0.0011 38.8 10.8 75 589-668 339-430 (480)
183 cd04300 GT1_Glycogen_Phosphory 61.4 28 0.00062 43.2 8.6 129 529-658 527-688 (797)
184 KOG4626 O-linked N-acetylgluco 60.2 28 0.0006 41.8 7.7 170 522-694 749-939 (966)
185 TIGR01012 Sa_S2_E_A ribosomal 59.5 21 0.00045 37.0 6.0 120 544-667 43-170 (196)
186 TIGR01251 ribP_PPkin ribose-ph 57.9 88 0.0019 34.5 11.1 54 307-361 45-99 (308)
187 PF01113 DapB_N: Dihydrodipico 56.4 20 0.00043 34.0 5.0 44 596-639 59-102 (124)
188 PF12038 DUF3524: Domain of un 56.1 1E+02 0.0023 31.1 10.1 103 389-497 28-132 (168)
189 KOG1050 Trehalose-6-phosphate 55.8 55 0.0012 40.4 9.8 144 531-674 275-447 (732)
190 KOG3349 Predicted glycosyltran 53.8 47 0.001 33.1 7.1 92 534-634 6-106 (170)
191 PRK04020 rps2P 30S ribosomal p 53.7 31 0.00068 35.9 6.3 144 543-690 48-199 (204)
192 TIGR00288 conserved hypothetic 53.0 50 0.0011 33.2 7.3 67 544-611 88-155 (160)
193 PF04230 PS_pyruv_trans: Polys 52.1 2.1E+02 0.0046 29.0 12.4 88 544-636 189-284 (286)
194 PF11071 DUF2872: Protein of u 52.0 56 0.0012 31.8 7.0 92 575-666 11-141 (141)
195 COG0462 PrsA Phosphoribosylpyr 52.0 1.2E+02 0.0027 33.6 10.8 85 273-360 12-101 (314)
196 PRK14985 maltodextrin phosphor 51.3 18 0.00039 44.7 4.7 129 529-658 526-687 (798)
197 TIGR00670 asp_carb_tr aspartat 48.2 2.3E+02 0.0051 31.2 12.3 125 479-613 91-225 (301)
198 PRK02812 ribose-phosphate pyro 47.6 26 0.00056 39.2 4.9 100 258-360 14-118 (330)
199 PF13793 Pribosyltran_N: N-ter 47.6 23 0.0005 33.4 3.9 56 304-360 42-97 (116)
200 PF01408 GFO_IDH_MocA: Oxidore 47.4 85 0.0018 28.6 7.6 68 561-634 23-92 (120)
201 TIGR02093 P_ylase glycogen/sta 46.2 51 0.0011 41.0 7.4 130 529-659 524-686 (794)
202 TIGR03646 YtoQ_fam YtoQ family 44.2 88 0.0019 30.5 7.1 92 574-665 13-143 (144)
203 PF11997 DUF3492: Domain of un 43.6 76 0.0017 34.3 7.6 76 419-497 171-258 (268)
204 PRK01259 ribose-phosphate pyro 43.4 2.1E+02 0.0046 31.6 11.2 54 307-361 45-98 (309)
205 cd01080 NAD_bind_m-THF_DH_Cycl 43.0 82 0.0018 31.7 7.2 66 550-615 31-98 (168)
206 KOG0832 Mitochondrial/chloropl 42.0 3E+02 0.0064 29.4 11.1 38 606-644 175-213 (251)
207 COG2327 WcaK Polysaccharide py 41.8 6E+02 0.013 29.2 18.0 232 420-669 89-352 (385)
208 PTZ00254 40S ribosomal protein 40.8 37 0.0008 36.4 4.5 97 542-639 50-153 (249)
209 PRK05447 1-deoxy-D-xylulose 5- 39.6 1.1E+02 0.0023 35.1 8.1 90 541-637 33-124 (385)
210 PLN02527 aspartate carbamoyltr 38.9 3.7E+02 0.0081 29.7 12.2 127 478-613 91-227 (306)
211 PRK11891 aspartate carbamoyltr 38.9 3E+02 0.0066 32.0 11.8 127 479-613 178-317 (429)
212 PRK03092 ribose-phosphate pyro 38.5 52 0.0011 36.3 5.4 68 290-360 19-86 (304)
213 PRK07199 phosphoribosylpyropho 38.4 30 0.00065 38.1 3.6 67 291-361 33-99 (301)
214 KOG1192 UDP-glucuronosyl and U 38.3 2.8E+02 0.0062 31.9 11.8 127 535-670 281-425 (496)
215 PLN02369 ribose-phosphate pyro 38.1 55 0.0012 36.1 5.5 67 291-360 22-88 (302)
216 PF03016 Exostosin: Exostosin 37.3 29 0.00064 37.1 3.3 37 600-636 232-269 (302)
217 PRK05472 redox-sensing transcr 37.1 3.1E+02 0.0066 28.3 10.6 93 542-634 63-176 (213)
218 PRK13397 3-deoxy-7-phosphohept 36.4 5.5E+02 0.012 27.7 12.5 110 542-667 23-148 (250)
219 PRK13398 3-deoxy-7-phosphohept 35.9 6E+02 0.013 27.5 14.0 116 534-666 28-159 (266)
220 PRK02458 ribose-phosphate pyro 35.1 53 0.0012 36.5 4.9 86 272-360 16-106 (323)
221 COG2984 ABC-type uncharacteriz 34.4 1.2E+02 0.0026 33.8 7.3 115 547-666 145-278 (322)
222 PRK00048 dihydrodipicolinate r 32.3 1.4E+02 0.0029 32.0 7.3 42 596-637 52-93 (257)
223 PF10933 DUF2827: Protein of u 31.3 8.4E+02 0.018 27.8 18.8 291 320-670 14-332 (364)
224 cd00027 BRCT Breast Cancer Sup 31.0 2.6E+02 0.0056 21.8 7.3 61 564-634 2-64 (72)
225 PLN02297 ribose-phosphate pyro 30.0 93 0.002 34.8 5.7 84 273-360 24-114 (326)
226 PF08824 Serine_rich: Serine r 29.3 35 0.00077 34.2 2.0 85 11-100 22-109 (159)
227 PTZ00145 phosphoribosylpyropho 29.3 81 0.0018 36.7 5.2 86 272-360 126-216 (439)
228 cd01750 GATase1_CobQ Type 1 gl 29.0 1.5E+02 0.0032 30.3 6.6 65 566-634 3-78 (194)
229 COG1887 TagB Putative glycosyl 29.0 7E+02 0.015 28.5 12.7 140 525-671 201-357 (388)
230 TIGR01361 DAHP_synth_Bsub phos 28.8 4.9E+02 0.011 28.0 10.8 116 537-666 28-157 (260)
231 PRK00553 ribose-phosphate pyro 28.8 65 0.0014 36.1 4.2 86 272-360 16-106 (332)
232 PF13407 Peripla_BP_4: Peripla 28.7 2.9E+02 0.0063 28.3 8.9 35 603-637 54-89 (257)
233 PRK04923 ribose-phosphate pyro 28.5 73 0.0016 35.4 4.5 84 273-360 14-103 (319)
234 PF08822 DUF1804: Protein of u 28.4 93 0.002 31.4 4.8 84 152-251 46-143 (165)
235 PF03852 Vsr: DNA mismatch end 27.5 7.8 0.00017 33.9 -2.5 48 268-317 16-63 (75)
236 COG0111 SerA Phosphoglycerate 27.2 2.6E+02 0.0056 31.2 8.6 91 563-663 142-249 (324)
237 COG1052 LdhA Lactate dehydroge 27.2 2.5E+02 0.0054 31.3 8.4 40 598-637 194-238 (324)
238 cd05212 NAD_bind_m-THF_DH_Cycl 26.6 4.3E+02 0.0093 25.8 9.0 71 560-632 25-97 (140)
239 PRK15438 erythronate-4-phospha 25.6 4E+02 0.0087 30.4 9.9 76 562-637 115-209 (378)
240 cd00316 Oxidoreductase_nitroge 25.4 6.6E+02 0.014 28.0 11.7 110 543-666 126-250 (399)
241 cd01425 RPS2 Ribosomal protein 25.2 7.4E+02 0.016 25.3 11.9 30 604-634 127-156 (193)
242 PF02670 DXP_reductoisom: 1-de 25.2 2E+02 0.0042 27.9 6.2 88 542-635 31-121 (129)
243 COG3727 Vsr DNA G:T-mismatch r 25.2 47 0.001 32.3 1.9 46 270-317 19-64 (150)
244 PRK00124 hypothetical protein; 24.9 1.2E+02 0.0026 30.2 4.9 72 566-637 3-77 (151)
245 cd06167 LabA_like LabA_like pr 24.9 2.1E+02 0.0045 27.2 6.6 67 542-609 78-147 (149)
246 PRK00934 ribose-phosphate pyro 24.8 93 0.002 33.9 4.5 82 275-360 9-95 (285)
247 PRK08192 aspartate carbamoyltr 24.8 9.9E+02 0.021 26.9 12.6 127 479-613 96-235 (338)
248 KOG2884 26S proteasome regulat 24.7 2.5E+02 0.0054 29.8 7.1 115 533-667 109-229 (259)
249 cd05564 PTS_IIB_chitobiose_lic 24.7 1.7E+02 0.0038 26.4 5.5 74 566-641 3-84 (96)
250 PF01531 Glyco_transf_11: Glyc 24.3 2.8E+02 0.006 30.3 8.1 64 547-612 190-255 (298)
251 PRK06718 precorrin-2 dehydroge 24.1 2.8E+02 0.0061 28.6 7.6 72 564-639 34-105 (202)
252 PF04413 Glycos_transf_N: 3-De 24.1 2.9E+02 0.0063 28.1 7.7 98 533-636 23-126 (186)
253 PRK02269 ribose-phosphate pyro 23.7 1E+02 0.0023 34.2 4.7 68 290-360 35-102 (320)
254 cd06284 PBP1_LacI_like_6 Ligan 23.3 5.1E+02 0.011 26.4 9.6 59 604-667 55-113 (267)
255 cd01965 Nitrogenase_MoFe_beta_ 23.3 8.2E+02 0.018 28.0 12.1 113 543-668 131-274 (428)
256 COG1519 KdtA 3-deoxy-D-manno-o 23.3 4.5E+02 0.0097 30.5 9.5 98 534-636 52-154 (419)
257 PF01936 NYN: NYN domain; Int 23.2 1.5E+02 0.0032 27.8 5.1 67 542-609 74-143 (146)
258 PRK00676 hemA glutamyl-tRNA re 23.2 4.6E+02 0.0099 29.6 9.5 129 562-694 173-317 (338)
259 cd06267 PBP1_LacI_sugar_bindin 23.0 7.2E+02 0.016 24.9 10.5 60 604-667 55-114 (264)
260 KOG4131 Ngg1-interacting facto 22.9 1.4E+02 0.0031 31.9 5.1 95 533-642 144-243 (272)
261 TIGR01286 nifK nitrogenase mol 22.9 9.2E+02 0.02 28.7 12.5 116 537-667 188-337 (515)
262 PF10649 DUF2478: Protein of u 22.6 1.1E+02 0.0023 30.8 4.1 36 602-637 91-132 (159)
263 cd01967 Nitrogenase_MoFe_alpha 22.5 5.2E+02 0.011 29.2 10.2 112 542-667 133-258 (406)
264 PLN02928 oxidoreductase family 22.3 2.5E+02 0.0055 31.5 7.4 40 595-634 217-261 (347)
265 PF13241 NAD_binding_7: Putati 22.2 1.1E+02 0.0024 27.8 3.8 41 600-640 56-97 (103)
266 PRK12595 bifunctional 3-deoxy- 21.8 1.2E+03 0.026 26.4 13.0 106 546-667 130-251 (360)
267 PRK01713 ornithine carbamoyltr 21.8 8.8E+02 0.019 27.2 11.5 124 478-612 96-233 (334)
268 cd06289 PBP1_MalI_like Ligand- 21.6 7.7E+02 0.017 25.0 10.5 61 604-667 55-115 (268)
269 cd01539 PBP1_GGBP Periplasmic 21.5 5.2E+02 0.011 27.6 9.5 34 604-637 57-91 (303)
270 COG1830 FbaB DhnA-type fructos 21.4 6.6E+02 0.014 27.4 9.9 115 535-669 117-261 (265)
271 TIGR00658 orni_carb_tr ornithi 21.3 1.1E+03 0.024 25.9 12.0 120 480-612 91-224 (304)
272 PRK13302 putative L-aspartate 21.2 4E+02 0.0087 28.7 8.5 68 562-634 30-97 (271)
273 PRK03515 ornithine carbamoyltr 21.1 9.5E+02 0.021 27.0 11.6 124 479-613 96-234 (336)
274 cd06318 PBP1_ABC_sugar_binding 20.9 8.1E+02 0.018 25.2 10.6 59 604-666 55-117 (282)
275 TIGR01658 EYA-cons_domain eyes 20.9 1.5E+02 0.0032 32.0 4.8 50 552-604 217-268 (274)
276 PF10686 DUF2493: Protein of u 20.6 5.5E+02 0.012 22.1 7.5 58 532-591 3-63 (71)
277 cd05014 SIS_Kpsf KpsF-like pro 20.3 2.1E+02 0.0045 26.4 5.4 73 565-637 2-83 (128)
278 PRK05749 3-deoxy-D-manno-octul 20.2 5.5E+02 0.012 29.0 9.7 101 532-636 51-155 (425)
279 PF01012 ETF: Electron transfe 20.1 1.9E+02 0.0042 28.2 5.3 89 546-634 16-120 (164)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=6.1e-202 Score=1703.48 Aligned_cols=772 Identities=84% Similarity=1.337 Sum_probs=723.5
Q ss_pred CCCCCCcccchhhhhhhhHHhhcchhhhHHHHHHhhhhhhhhhhhhhHHHHHHhhccCCC----------CCchhhhHHH
Q 003992 4 ETQATSSSKAFSFISRSWREVRDSADADIQLMKNRANSFKNLATSFDRELENFLNSANRS----------SAPAEIDFVK 73 (781)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 73 (781)
.+++.++++||||||||||||||||+|||||||+|||||||||++|||||||||||||++ +|++|+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~v~~sa~~~~~l~~~~~~s~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (794)
T PLN02501 3 LSMTLSSTNAFSFLSKGWREVRDSADADLQLMRARANSFKNLASSFDREIENFFNSASRSSFPVGSPSASSFPTEIDFVK 82 (794)
T ss_pred cceeccCcchHHHHHhhHHHhhhcchhhHHHHHHHhhhhhhhhhhhHHHHHHHhhhccccccCCCCcccCCCccchHHHH
Confidence 456778889999999999999999999999999999999999999999999999999983 8999999999
Q ss_pred hhcchhhhhhhccCchhhhHHHhhhcCCCcceeechhhhhhhhhcccccccccCCCccccccccc---cccccccccccc
Q 003992 74 KLQPKISEFRRVYSAPEISKRVLEKWGPRARIRIDLSAIRNAIVSDVDVDAERDGGGIIEFDRGK---RGRVGFRELWGE 150 (781)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 150 (781)
+||||||||||+||+|+|++||||+|+|++++||||||||||||++++ ++++.|+|+++|+| +.|.||++||++
T Consensus 83 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~lsai~~a~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (794)
T PLN02501 83 KLQPKISEFRRVYSAPEISRKVLEKWGPRAKLGIDLSAIKNAIVAEME---LDDRGGIVEFDRVRRRRNSRVRFTEFWGE 159 (794)
T ss_pred HhchhHHHHhhhccCchhhhhhhhccCCcccccccHHHHhhhhccccc---cccccCcccccccccccccccchhhhhhh
Confidence 999999999999999999999999999999999999999999999865 45689999986654 335678889884
Q ss_pred ------ccCCcchhHHHHHHHHHHHHHhhcchhhhHhcCCCchhHHHHHHhhhhhhccCCCCCCCCCCCChHHHHHHHHh
Q 003992 151 ------REVGEWEPIRTLKMRLREFERKRELSVEEIFGGFKSSDFVEKVKSSWKAICKEPEESKDVPPLDPTELLAHLVR 224 (781)
Q Consensus 151 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (781)
++.+|||||||||.+|||||||++++ |||+||||+|||||||+|||+|||||++||||||||||||||||||
T Consensus 160 ~~~~~~~~~~~~~~~r~~~~~~~e~e~~~~~~--~~~~~~~~~~~~~k~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (794)
T PLN02501 160 AKEEGEGQFGEWEPIRALKTRFRELEKRSESL--EIFGGFKNSEFVEKLKSSLKAIYKEPQESKDVPPLDVPELLAYLVR 237 (794)
T ss_pred hhhcccccccchhhHHHHHHHHHHHHhhcchH--HHhcccchHHHHHHHHHHHHhhhcCccccccCCCcchHHHHHHHHh
Confidence 44899999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccchhhhHHHHHHHhhhhhhhhhhhhcccCCCcccccccCCcccccccccccccccccccCCccccCCCCC
Q 003992 225 QSGPFLDHLGVKRDLCDKIVESLCSKRKEQLLLRSIAGGECSVLENDNINDELDLRIASVLQSTGHHYEGGFWTDFGKDD 304 (781)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (781)
||||||||||||||+||||||+||||||+|++||++|++++++++|++.+|+||||||||||||||||+||||||+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (794)
T PLN02501 238 QSEPFLDQLGVRKDICDKIVESLCSKRKNQLLLRSLSAGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHE 317 (794)
T ss_pred hccchhhhhhhhHHHHHHHHHHHHhhccccccccccccccccccccccccccchhhhhhhhhccCccccCCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcccccc-ccccCCchhhHHHHHHHHHh
Q 003992 305 LSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEER 383 (781)
Q Consensus 305 ~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~-i~f~~p~~qe~yir~~l~~r 383 (781)
+.+++++|+||||+.+|||||+++||++||+|||+.|.++||+|+|||+..||+.|||+ ++|.+|++|+.|++.|++++
T Consensus 318 ~~~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r 397 (794)
T PLN02501 318 LSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEER 397 (794)
T ss_pred cccCCCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988899999999999999999997 99999999999999999999
Q ss_pred hCCcccceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcCCEEEEEECCcHHHHHHh
Q 003992 384 VGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKRE 463 (781)
Q Consensus 384 ig~~~~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~pvV~ivHt~y~~y~~~~ 463 (781)
+|+++++.|.|||++|+.+.+||+|++++.+.|++++|||||+++|++++|++||++|+++++|+|+++||+|.+|..++
T Consensus 398 ~g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 398 IGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred cCCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999997789999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccC
Q 003992 464 KNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVW 543 (781)
Q Consensus 464 ~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~ 543 (781)
+.+.+..++.+.+++++.++|||.||++|..+++++..++.++||||+++|.+..+...+..+|+..+.+.++|+||+.+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~ 557 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVW 557 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHHhcccceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccc
Confidence 88888888888999999988899999999999988877777779999999998766544556676655677999999999
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHH
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAE 623 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLE 623 (781)
+||++.||+|+..+.++.++++|+|+|+||++++++++++++++.|.|+|+.++...+|+.+||||+||.+|+||++++|
T Consensus 558 EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLE 637 (794)
T PLN02501 558 AKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAE 637 (794)
T ss_pred cCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHH
Confidence 99999999999999887889999999999999999999999998999999999988899999999999999999999999
Q ss_pred HHHhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHhhhccccccCC
Q 003992 624 ALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSELNRILNNNK 703 (781)
Q Consensus 624 AMA~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Ye~~~vl~~~~ 703 (781)
|||||+|||++++|++.++.++.+|+.++|+++|+++|.+++.+++.+..+.....+||++++++++++.+++++++...
T Consensus 638 AMA~GlPVVATd~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~~~~~~~~~~ 717 (794)
T PLN02501 638 ALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSDLDKVLNNGD 717 (794)
T ss_pred HHHcCCCEEEecCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhcccccccccc
Confidence 99999999999999988877788999899999999999999999887766777789999999999999999999987632
Q ss_pred CCcccccccccccccccCCCCcccccccchhhhhhhccchhhhhhhcCCCCCCCCCchhhhhcCCCCCCCCCCCCCCC
Q 003992 704 DDAKSSRNDGKIIRKSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCRDLHLLPPQVENPIYGW 781 (781)
Q Consensus 704 ~~~~~~~~r~~~~~~s~~~p~l~~i~d~~~A~~h~~l~g~e~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (781)
. ........+.+..+.+.|+++.++|+++||.|||++|+|++|+|+||+|||+|||+|||+||||+||++++|+|||
T Consensus 718 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (794)
T PLN02501 718 D-AKLSKSGGKSITKSVSMPNLSEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPHVENPIYGW 794 (794)
T ss_pred c-cccccccccchhhhccCCcHHHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCcCHHHHHhcCCCCCCCCCCCCCC
Confidence 1 2223344455666677889999999999999999999999999999999999999999999999999999999999
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.5e-78 Score=683.72 Aligned_cols=456 Identities=57% Similarity=1.012 Sum_probs=398.6
Q ss_pred CCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcccccc-ccccCCchhhHHHHHHHHHhhC
Q 003992 307 DKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVG 385 (781)
Q Consensus 307 ~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~-i~f~~p~~qe~yir~~l~~rig 385 (781)
+++|||||||++|+|||||++++++.++++|+++|+|+|++|+||++..+|..+||+ ++|.++++|+.|+++|+.+++.
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~ 81 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERIS 81 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEE
Confidence 457999999999999999999999999999999996699999999998888889998 9999999999999999976665
Q ss_pred CcccceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcCCEEEEEECCcHHHHHHhhc
Q 003992 386 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKN 465 (781)
Q Consensus 386 ~~~~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~pvV~ivHt~y~~y~~~~~~ 465 (781)
..+.+.+.+||+++....+++++..++.+.|++++|||||+++|++++|+.+|.+|+++++++|+++||+|.+|..++++
T Consensus 82 r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~ 161 (462)
T PLN02846 82 FLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKN 161 (462)
T ss_pred EecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhcc
Confidence 55678888899977666778888899999999999999999999999998677999988889999999999999988776
Q ss_pred chhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCC--CcEEEEEeeccC
Q 003992 466 GALQAFFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAF--SKGAYFLGKMVW 543 (781)
Q Consensus 466 ~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~--~~~ILfVGRL~~ 543 (781)
+....++.+.+++++.+++||.++++|..++++.+.++++++|||+++|.+..+. .+.... ..+ .++++||||+.+
T Consensus 162 g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~-~~~~~~-~~~~~~~~~l~vGRL~~ 239 (462)
T PLN02846 162 GRVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLK-LEQQKN-GEQAFTKGAYYIGKMVW 239 (462)
T ss_pred chHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceechhhcCCCccc-HhhhcC-CCCCcceEEEEEecCcc
Confidence 6667778888999998888999999999888888777777899999999876543 222222 222 457899999999
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcE-EEcCCCCCHHHHHhcccEEEEccCCCCChHHHH
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNL-NFQKGRDHADDSLHGYKVFINPSISDVLCTATA 622 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V-~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviL 622 (781)
+||++.||+++.++.+..++++|+|+|+||++++|+++++++++++ .|.|. .+.+++|+.+||||+||.+|+||++++
T Consensus 240 eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~-~~~~~~~~~~DvFv~pS~~Et~g~v~l 318 (462)
T PLN02846 240 SKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR-DHADPLFHDYKVFLNPSTTDVVCTTTA 318 (462)
T ss_pred cCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC-CCHHHHHHhCCEEEECCCcccchHHHH
Confidence 9999999999999988788999999999999999999999999874 46665 556679999999999999999999999
Q ss_pred HHHHhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHhhhccccccC
Q 003992 623 EALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSELNRILNNN 702 (781)
Q Consensus 623 EAMA~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Ye~~~vl~~~ 702 (781)
||||||+|||++++++++++.+++||+.++|.++++++|.++++++......+.++.|||++++++++++|++++.+++.
T Consensus 319 EAmA~G~PVVa~~~~~~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~ 398 (462)
T PLN02846 319 EALAMGKIVVCANHPSNEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAK 398 (462)
T ss_pred HHHHcCCcEEEecCCCcceeecCCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCccc
Confidence 99999999999999998888889999999999999999999998764333335667999999999999999988887655
Q ss_pred CCCcccccccccccccccCCCCcccccccchhhhhhhccchhhhhhhcCCCCCCCCCchhhhhcCCCCCC
Q 003992 703 KDDAKSSRNDGKIIRKSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCRDLHLLPP 772 (781)
Q Consensus 703 ~~~~~~~~~r~~~~~~s~~~p~l~~i~d~~~A~~h~~l~g~e~~r~~~ga~~~~~~~~~~~~~~~~~~~~ 772 (781)
+.. +.+.++++.+ |++++++|+++|+.|++++|+|++|+++||+|||++||+|||+||||.||
T Consensus 399 ~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (462)
T PLN02846 399 PNK------SSLKNFMSTS-PNLKKNMEDASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQ 461 (462)
T ss_pred ccc------ccccchhccC-ccHhhhhhhHHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCC
Confidence 321 1233555444 78999999999999999999999999999999999999999999999987
No 3
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=4.4e-36 Score=341.90 Aligned_cols=356 Identities=16% Similarity=0.141 Sum_probs=254.6
Q ss_pred CCCCEEEEEeCc-cCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhC
Q 003992 307 DKKRNVAIVTTA-SLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVG 385 (781)
Q Consensus 307 ~~~~rIaI~Tta-flP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig 385 (781)
.++|||+||+.. ++|..+|++......+.+|.+.|| +|+++++.-.... .+..+. .++
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~-eV~vlt~~~~~~~---~~~g~~-----------------v~~ 114 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGD-EVLVVTTDEGVPQ---EFHGAK-----------------VIG 114 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCC-eEEEEecCCCCCc---cccCce-----------------eec
Confidence 678999999874 466788888766777899999996 9999986311100 000000 000
Q ss_pred CcccceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhh
Q 003992 386 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREK 464 (781)
Q Consensus 386 ~~~~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~ 464 (781)
.. .+.+.++.. . ..+......+.+.+++.+|||||++.|....+.. ..+++..+ |+|.++|+++..+...+.
T Consensus 115 ~~-~~~~~~~~~-~---~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~--~~~ak~~~ip~V~~~h~~~~~~~~~~~ 187 (465)
T PLN02871 115 SW-SFPCPFYQK-V---PLSLALSPRIISEVARFKPDLIHASSPGIMVFGA--LFYAKLLCVPLVMSYHTHVPVYIPRYT 187 (465)
T ss_pred cC-CcCCccCCC-c---eeeccCCHHHHHHHHhCCCCEEEECCCchhHHHH--HHHHHHhCCCEEEEEecCchhhhhccc
Confidence 00 000001110 0 0011111256778888999999999886554433 45566667 999999998766543322
Q ss_pred cchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCCCCcc-hhhHhhhC-cCCCCcE
Q 003992 465 NGALQAFFVKHINNWVTRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQIGEK-VATDREQG-QQAFSKG 534 (781)
Q Consensus 465 ~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~p~~~-~~~r~~~G-i~~~~~~ 534 (781)
.......+ ..+.+++.+ .+|.|+++|+.+++. ..++.+++||||.+.|.+... ...+.++. ..++.++
T Consensus 188 ~~~~~~~~-~~~~r~~~~-~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~ 265 (465)
T PLN02871 188 FSWLVKPM-WDIIRFLHR-AADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPL 265 (465)
T ss_pred chhhHHHH-HHHHHHHHh-hCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeE
Confidence 11111112 223445555 699999999977652 235788999999887765422 22333332 2345788
Q ss_pred EEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEcc
Q 003992 535 AYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPS 612 (781)
Q Consensus 535 ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS 612 (781)
++|+||+.++||++.|+++++++ ++++|+|+|+|++.++++++++.. +|.|+|++++.+ .+|+.||+||+||
T Consensus 266 i~~vGrl~~~K~~~~li~a~~~~----~~~~l~ivG~G~~~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 266 IVYVGRLGAEKNLDFLKRVMERL----PGARLAFVGDGPYREELEKMFAGT--PTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred EEEeCCCchhhhHHHHHHHHHhC----CCcEEEEEeCChHHHHHHHHhccC--CeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 99999999999999999998875 689999999999999998888743 599999997655 9999999999999
Q ss_pred CCCCChHHHHHHHHhCCcEEEeCCCCcceeec----CCcccc--CCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCC
Q 003992 613 ISDVLCTATAEALAMGKFVICADHPSNEFFRS----FPNCLT--YKTSEDFVARVKEALANDPQPLTP-----EQRYNLS 681 (781)
Q Consensus 613 ~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~----~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fS 681 (781)
.+|+||++++||||||+|||+++.++..+++. +.+|+. ++|+++++++|.++++|++.+.+| ...++|+
T Consensus 340 ~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fs 419 (465)
T PLN02871 340 ESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWD 419 (465)
T ss_pred cccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998866543 456644 489999999999999998887777 3457899
Q ss_pred HHHHHHHHHH-Hhhhccccc
Q 003992 682 WEAATQRFIE-YSELNRILN 700 (781)
Q Consensus 682 We~iaerll~-~Ye~~~vl~ 700 (781)
|+.+++++++ .|+ +++.
T Consensus 420 w~~~a~~l~~~~Y~--~~~~ 437 (465)
T PLN02871 420 WRAATRKLRNEQYS--AAIW 437 (465)
T ss_pred HHHHHHHHHHHHHH--HHHH
Confidence 9999999998 798 7774
No 4
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=8.5e-36 Score=333.08 Aligned_cols=367 Identities=14% Similarity=0.061 Sum_probs=257.4
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEecc--CCCCCCccccccccccCCchhhHHHHHHHHHhhCCc
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPW--LCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFK 387 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~--l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~ 387 (781)
|||+|||..|+|..+|++......+.+|.+.|| +|+++++. .........+++ ..+.. + ..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~-~V~vit~~~~~~~~~~~~~~~~---------~~~~~----~---~~ 63 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGH-EVRVITAPPYYPQWRVGEGYSA---------WRYRR----E---SE 63 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCC-eEEEEecCCCCCCCCCCccccc---------cccee----e---ec
Confidence 799999999999999999888888999999996 99999963 111000000000 00000 0 00
Q ss_pred ccceeeccCCcc---cccccccCc-----h---HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECC
Q 003992 388 ADFKISFYPGKF---SKERRSIIP-----A---GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTN 455 (781)
Q Consensus 388 ~~~~i~~yP~~~---~~~~~sil~-----v---~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~ 455 (781)
.++.+..+|... ......++. . ..+.+.+. .+|||||++.|..+.... +..++++.+ |++..+|+.
T Consensus 64 ~~i~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~p~~~~~~~-~~~~~~~~~~~~v~~~~d~ 141 (412)
T PRK10307 64 GGVTVWRCPLYVPKQPSGLKRLLHLGSFALSSFFPLLAQRR-WRPDRVIGVVPTLFCAPG-ARLLARLSGARTWLHIQDY 141 (412)
T ss_pred CCeEEEEccccCCCCccHHHHHHHHHHHHHHHHHHHhhccC-CCCCEEEEeCCcHHHHHH-HHHHHHhhCCCEEEEeccC
Confidence 111121111100 000011110 0 11222222 789999999887654332 344556666 888888876
Q ss_pred cHHHHHHhhc--chhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-------CCCcEEeeCCCCCCCCCCCcc---hhhH
Q 003992 456 YLEYIKREKN--GALQAFFVKHINNWVTRAYCDKVLRLSAATQDL-------PKSVICNVHGVNPKFLQIGEK---VATD 523 (781)
Q Consensus 456 y~~y~~~~~~--~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-------~~kivvi~nGVD~~~f~p~~~---~~~r 523 (781)
+.+.....+. ......+...+++++.+ .+|.|+++|+.+++. ..++.+++||||.+.+.+... ...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~ 220 (412)
T PRK10307 142 EVDAAFGLGLLKGGKVARLATAFERSLLR-RFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALR 220 (412)
T ss_pred CHHHHHHhCCccCcHHHHHHHHHHHHHHh-hCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHH
Confidence 6543221111 11122234445666666 699999999977652 135678999999776654321 2356
Q ss_pred hhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc-EEEcCCCCCHH--H
Q 003992 524 REQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHAD--D 600 (781)
Q Consensus 524 ~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~-V~FlG~v~~~e--~ 600 (781)
.+++++++.++++|+|++.+.||++.|++|+.++.+ .++++|+|+|+|+..++++++++++++. |.|+|++++.+ .
T Consensus 221 ~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 221 AQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred HHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 677877777899999999999999999999998854 5889999999999999999999988877 99999988665 8
Q ss_pred HHhcccEEEEccCCCC----ChHHHHHHHHhCCcEEEeCCCCcc--eeecCCccc--cCCCHHHHHHHHHHHHhCCCCCC
Q 003992 601 SLHGYKVFINPSISDV----LCTATAEALAMGKFVICADHPSNE--FFRSFPNCL--TYKTSEDFVARVKEALANDPQPL 672 (781)
Q Consensus 601 ly~~ADVfVlPS~~Eg----fGlviLEAMA~G~PVVaSd~gg~g--~L~~~~ngv--~~~D~eeLa~aI~~LL~d~~~r~ 672 (781)
+|+.||++++||..|+ +|.+++||||||+|||+|+.++.+ .+.. .+|+ ..+|+++++++|.++++|+..+.
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~-~~G~~~~~~d~~~la~~i~~l~~~~~~~~ 378 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE-GIGVCVEPESVEALVAAIAALARQALLRP 378 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh-CCcEEeCCCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999998 577899999999999999987643 3344 3554 44899999999999999988777
Q ss_pred Ch------HHHHcCCHHHHHHHHHHHhhhccccc
Q 003992 673 TP------EQRYNLSWEAATQRFIEYSELNRILN 700 (781)
Q Consensus 673 ~m------~~~~~fSWe~iaerll~~Ye~~~vl~ 700 (781)
+| ...++|||+.+++++++.|+ +++.
T Consensus 379 ~~~~~a~~~~~~~fs~~~~~~~~~~~~~--~~~~ 410 (412)
T PRK10307 379 KLGTVAREYAERTLDKENVLRQFIADIR--GLVA 410 (412)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHH--HHhc
Confidence 77 23468999999999999999 6653
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=8.4e-36 Score=332.15 Aligned_cols=346 Identities=15% Similarity=0.167 Sum_probs=251.5
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++||..|.|+.+|.+......|..|++.|| +|+++++.... .. ...+ . ..|+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~-~V~v~~~~~~~--~~----~~~~-------------~--~~~i---- 54 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGH-KVVVITHAYGN--RV----GIRY-------------L--TNGL---- 54 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCC-eeEEEeccCCc--CC----Cccc-------------c--cCce----
Confidence 69999999999999999888889999999996 99999874211 00 0000 0 0011
Q ss_pred eeeccCCcc----cccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhc
Q 003992 391 KISFYPGKF----SKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKN 465 (781)
Q Consensus 391 ~i~~yP~~~----~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~ 465 (781)
.+...|... .........+..+.+.+.+.+|||||++++...... .+..+++..+ |+|.+.|+.+... .
T Consensus 55 ~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~-~~~~~~~~~~~~~v~t~h~~~~~~-~---- 128 (398)
T cd03796 55 KVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVHGHQAFSALAH-EALLHARTMGLKTVFTDHSLFGFA-D---- 128 (398)
T ss_pred eEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEEECCCCchHHH-HHHHHhhhcCCcEEEEeccccccc-c----
Confidence 111111000 000000112234667778889999999986543211 1244566666 9999999754210 0
Q ss_pred chhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEE
Q 003992 466 GALQAFFVKHINNWVTRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYF 537 (781)
Q Consensus 466 ~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILf 537 (781)
........+.++..+ .+|.++++|...++. .+++.+++||+|...|.+.... ..++.++++|
T Consensus 129 --~~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------~~~~~~~i~~ 198 (398)
T cd03796 129 --ASSIHTNKLLRFSLA-DVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------RDNDKITIVV 198 (398)
T ss_pred --hhhHHhhHHHHHhhc-cCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-------CCCCceEEEE
Confidence 001112223344444 699999999976541 2357889999998766543211 1235678999
Q ss_pred EeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccC
Q 003992 538 LGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSI 613 (781)
Q Consensus 538 VGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~ 613 (781)
+||+.++||++.|++|+..+.++.++++|+|+|+|+..+.++++++++++. |.|+|++++.+ .+|+.||+|++||.
T Consensus 199 ~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~ 278 (398)
T cd03796 199 ISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL 278 (398)
T ss_pred EeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh
Confidence 999999999999999999998888999999999999999999999998876 99999987655 99999999999999
Q ss_pred CCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCccccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHH
Q 003992 614 SDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAAT 686 (781)
Q Consensus 614 ~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~ia 686 (781)
.|+||++++||||||+|||+++.|+..+++. +.+++...|+++++++|.+++++......+ ...++|||+.++
T Consensus 279 ~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~ 358 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVA 358 (398)
T ss_pred hhccCHHHHHHHHcCCCEEECCCCCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHH
Confidence 9999999999999999999999998866554 334455579999999999999876555333 356789999999
Q ss_pred HHHHHHhhhccccc
Q 003992 687 QRFIEYSELNRILN 700 (781)
Q Consensus 687 erll~~Ye~~~vl~ 700 (781)
++++++|+ +++.
T Consensus 359 ~~~~~~y~--~l~~ 370 (398)
T cd03796 359 KRTEKVYD--RILQ 370 (398)
T ss_pred HHHHHHHH--HHhc
Confidence 99999999 7774
No 6
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=8.4e-34 Score=315.12 Aligned_cols=357 Identities=15% Similarity=0.136 Sum_probs=249.1
Q ss_pred EEEEeCccCCCc-------CcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhh
Q 003992 312 VAIVTTASLPWM-------TGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERV 384 (781)
Q Consensus 312 IaI~TtaflP~~-------~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~ri 384 (781)
||.+|...+|+. +|+++.....|.+|.+.|+ +|+++++.......... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~-~V~v~~~~~~~~~~~~~-~---------------------- 56 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGI-EVDIFTRATRPSQPPVV-E---------------------- 56 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCC-EEEEEecccCCCCCCcc-c----------------------
Confidence 678899999988 8888888999999999996 99999875321111000 0
Q ss_pred CCcccceeeccCCc-ccc----cccc-c--CchHhHHhhcc--cCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEE
Q 003992 385 GFKADFKISFYPGK-FSK----ERRS-I--IPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVH 453 (781)
Q Consensus 385 g~~~~~~i~~yP~~-~~~----~~~s-i--l~v~~L~k~I~--~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivH 453 (781)
...++.+..++.. +.. .... + +....+..+++ ..+|||||+|.... ++.+ ..+++..+ |+|.++|
T Consensus 57 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~-~~~~--~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 57 -VAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLS-GQVG--WLLRDRWGVPLVHTAH 132 (405)
T ss_pred -cCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHH-HHHH--HHHHHhcCCCEEEecc
Confidence 0000111111000 000 0000 0 00011223333 24899999987332 2322 34445556 9999999
Q ss_pred CCcHHHHHHhhc-chhHHHHHHHHHHHHHHhcCCEEEEcChhhhh-c-------CCCcEEeeCCCCCCCCCCCcchhhHh
Q 003992 454 TNYLEYIKREKN-GALQAFFVKHINNWVTRAYCDKVLRLSAATQD-L-------PKSVICNVHGVNPKFLQIGEKVATDR 524 (781)
Q Consensus 454 t~y~~y~~~~~~-~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~-l-------~~kivvi~nGVD~~~f~p~~~~~~r~ 524 (781)
+.+......... ........+.+++.+.+ .+|.++++|+...+ + ..++.+++||||.+.+.+......+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~ 211 (405)
T TIGR03449 133 TLAAVKNAALADGDTPEPEARRIGEQQLVD-NADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERA 211 (405)
T ss_pred chHHHHHHhccCCCCCchHHHHHHHHHHHH-hcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHH
Confidence 764211110000 00111223334444444 69999999996433 1 13567899999987776654445566
Q ss_pred hhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC--cEEEEEeC----C-CCHHHHHHHHHhcCCc--EEEcCCC
Q 003992 525 EQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG--FKLDVFGN----G-EDAYEVQSAAKRLDLN--LNFQKGR 595 (781)
Q Consensus 525 ~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~--i~LvIVG~----G-p~~~~L~~~a~~lgL~--V~FlG~v 595 (781)
++++++++++++|+|++.+.||++.|++|+.++.++.++ ++|+|+|+ | +..++++++++++++. |.|+|++
T Consensus 212 ~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~ 291 (405)
T TIGR03449 212 RLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPR 291 (405)
T ss_pred hcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCC
Confidence 777777788999999999999999999999999877776 99999996 4 4567889999988876 9999999
Q ss_pred CCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceee-cCCcccc--CCCHHHHHHHHHHHHhCCCC
Q 003992 596 DHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLT--YKTSEDFVARVKEALANDPQ 670 (781)
Q Consensus 596 ~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~~ngv~--~~D~eeLa~aI~~LL~d~~~ 670 (781)
++.+ ++|+.||+||+||..|+||++++||||||+|||+++.|+..+++ ++.+|+. .+|+++++++|.+++++++.
T Consensus 292 ~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~ 371 (405)
T TIGR03449 292 PPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRT 371 (405)
T ss_pred CHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHH
Confidence 8766 89999999999999999999999999999999999999876544 4555644 37999999999999998876
Q ss_pred CCCh-----HHHHcCCHHHHHHHHHHHhhhcccc
Q 003992 671 PLTP-----EQRYNLSWEAATQRFIEYSELNRIL 699 (781)
Q Consensus 671 r~~m-----~~~~~fSWe~iaerll~~Ye~~~vl 699 (781)
+.+| +..++|||+.++++++++|. +++
T Consensus 372 ~~~~~~~~~~~~~~fsw~~~~~~~~~~y~--~~~ 403 (405)
T TIGR03449 372 RIRMGAAAVEHAAGFSWAATADGLLSSYR--DAL 403 (405)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHh
Confidence 6666 33568999999999999998 554
No 7
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.6e-33 Score=303.91 Aligned_cols=349 Identities=16% Similarity=0.130 Sum_probs=246.5
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
|||||++ .|..+|.+......|.+|++.|+ +|++++..-.. ......+...+. .
T Consensus 1 mki~~~~---~p~~gG~~~~~~~la~~L~~~G~-~v~v~~~~~~~-~~~~~~~~~~~~---------------------~ 54 (371)
T cd04962 1 MKIGIVC---YPTYGGSGVVATELGKALARRGH-EVHFITSSRPF-RLDEYSPNIFFH---------------------E 54 (371)
T ss_pred CceeEEE---EeCCCCccchHHHHHHHHHhcCC-ceEEEecCCCc-chhhhccCeEEE---------------------E
Confidence 7999997 46789998888888999999995 99998752110 000000000000 0
Q ss_pred ceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHH-HHHHHhhcC-CEEEEEECCcHHHHHHhhcch
Q 003992 390 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHH-GKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 467 (781)
Q Consensus 390 ~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~-g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~ 467 (781)
..+..++.... ..........+.+.+++.+|||||++.+....+... .....+..+ |++.++|.........
T Consensus 55 ~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~----- 128 (371)
T cd04962 55 VEVPQYPLFQY-PPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQ----- 128 (371)
T ss_pred ecccccchhhc-chhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccc-----
Confidence 00000110000 000111224577888899999999986532111110 012222225 8898999643211110
Q ss_pred hHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEee
Q 003992 468 LQAFFVKHINNWVTRAYCDKVLRLSAATQDL-------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 540 (781)
Q Consensus 468 ~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGR 540 (781)
...+..+.++..+ .+|.|+++|+.+++. ..++.+++||+|...+.+......+.+++..++.++++|+|+
T Consensus 129 --~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 205 (371)
T cd04962 129 --DPSFQPATRFSIE-KSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHISN 205 (371)
T ss_pred --cccchHHHHHHHh-hCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEecc
Confidence 0011223334444 699999999976651 245788999999766655443444556777777889999999
Q ss_pred ccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCCh
Q 003992 541 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLC 618 (781)
Q Consensus 541 L~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfG 618 (781)
+.+.||++.+++++..+.++ .+++++++|+|++.+.+++.+++.++. |.|+|+.++...+|+.||++|+||..|+||
T Consensus 206 l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~ 284 (371)
T cd04962 206 FRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFG 284 (371)
T ss_pred cccccCHHHHHHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCc
Confidence 99999999999999998765 568999999999999999999888875 999999988889999999999999999999
Q ss_pred HHHHHHHHhCCcEEEeCCCCcceeec-CCcccc--CCCHHHHHHHHHHHHhCCCCCCCh-----H-HHHcCCHHHHHHHH
Q 003992 619 TATAEALAMGKFVICADHPSNEFFRS-FPNCLT--YKTSEDFVARVKEALANDPQPLTP-----E-QRYNLSWEAATQRF 689 (781)
Q Consensus 619 lviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m-----~-~~~~fSWe~iaerl 689 (781)
++++||||||+|||+++.|+...+.. +.+|+. .+|+++++++|..++++++.+.+| . ..++|||+.+++++
T Consensus 285 ~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 364 (371)
T cd04962 285 LAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQY 364 (371)
T ss_pred cHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998765443 456643 379999999999999988877666 2 25789999999999
Q ss_pred HHHhh
Q 003992 690 IEYSE 694 (781)
Q Consensus 690 l~~Ye 694 (781)
.+.|+
T Consensus 365 ~~~y~ 369 (371)
T cd04962 365 EALYR 369 (371)
T ss_pred HHHHH
Confidence 99997
No 8
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.8e-32 Score=293.14 Aligned_cols=347 Identities=20% Similarity=0.236 Sum_probs=250.9
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|+|..|+|..+|++......+.+|.+.|| +|+++++........ +.. . ..+. ..
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~-~v~~~~~~~~~~~~~--~~~--------~-----------~~~~-~~ 57 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGH-EVLVIAPGPFRESEG--PAR--------V-----------VPVP-SV 57 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCC-EEEEEeCCchhhccC--CCC--------c-----------eeec-cc
Confidence 69999999999999998887888999999996 999998642210000 000 0 0000 00
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
....++. ....+.....+.+.+++.+||+||++.+..+++.. ..++++.+ |++..+|+.+..+........ .
T Consensus 58 ~~~~~~~----~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~ 130 (364)
T cd03814 58 PLPGYPE----IRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLAA--LRAARRLGIPVVTSYHTDFPEYLRYYGLGP-L 130 (364)
T ss_pred ccCcccc----eEecccchhhHHHHHHhcCCCEEEEeccchhhHHH--HHHHHHcCCCEEEEEecChHHHhhhcccch-H
Confidence 0000100 00011122346677788999999999877666554 56666677 999999998876654332211 1
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChhhhhc-----CCCcEEeeCCCCCCCCCCCcch-hhHhhhCcCCCCcEEEEEeeccC
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAATQDL-----PKSVICNVHGVNPKFLQIGEKV-ATDREQGQQAFSKGAYFLGKMVW 543 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~~kivvi~nGVD~~~f~p~~~~-~~r~~~Gi~~~~~~ILfVGRL~~ 543 (781)
......+.+++.+ .+|.++++|+..++. ..++.+++||+|...+.+.... ..+..++ ..+.+.++|+|++.+
T Consensus 131 ~~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~ 208 (364)
T cd03814 131 SWLAWAYLRWFHN-RADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-PPDRPVLLYVGRLAP 208 (364)
T ss_pred hHhhHHHHHHHHH-hCCEEEeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC-CCCCeEEEEEecccc
Confidence 2222344455555 699999999977662 2256788899998777554322 2233343 345678899999999
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHH
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTAT 621 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlvi 621 (781)
.||++.+++++.++.++ ++++|+|+|+|++...++ ....+|.|+|+++..+ .+|+.||++++||..|+||+++
T Consensus 209 ~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~ 283 (364)
T cd03814 209 EKNLEALLDADLPLRRR-PPVRLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVV 283 (364)
T ss_pred ccCHHHHHHHHHHhhhc-CCceEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHH
Confidence 99999999999999887 899999999999887665 2333499999877655 8999999999999999999999
Q ss_pred HHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHHHHh
Q 003992 622 AEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFIEYS 693 (781)
Q Consensus 622 LEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll~~Y 693 (781)
+||||||+|||+++.++...+.. +.+|+ ...|.++++++|.++++|++.+.+| +....|+|+.+++++++.|
T Consensus 284 lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 284 LEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 99999999999999998865544 34553 3488999999999999999887777 2335899999999999988
Q ss_pred h
Q 003992 694 E 694 (781)
Q Consensus 694 e 694 (781)
+
T Consensus 364 ~ 364 (364)
T cd03814 364 R 364 (364)
T ss_pred C
Confidence 4
No 9
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.2e-33 Score=330.50 Aligned_cols=508 Identities=14% Similarity=0.139 Sum_probs=306.4
Q ss_pred hhHHHHHHHHHHHHHhhcchhhhHhcCCCc-hhHHHHHHhhhhhhccCCCCC-CCCCCCChH-HHHH-HHHhhhcccccc
Q 003992 157 EPIRTLKMRLREFERKRELSVEEIFGGFKS-SDFVEKVKSSWKAICKEPEES-KDVPPLDPT-ELLA-HLVRQSGPFLDH 232 (781)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~ 232 (781)
|.++-+...++-+|.|-+.+.+||..-+.- .+-++.|..+|+.+..|+..+ -+.|--+.| |+-. -|+|=-+=+|..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~ 430 (977)
T PLN02939 351 YKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEK 430 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhc
Confidence 466778888888888888888899888877 778888888888887665543 345555555 2322 233332222222
Q ss_pred cccchhhhHHHHHHHhhhhhh-hhhhhhcccCCCcccccccCCcccccccccccccccccccCCccccCCCCCCCCCCCE
Q 003992 233 LGVKRDLCDKIVESLCSKRKE-QLLLRSIAGGECSVLENDNINDELDLRIASVLQSTGHHYEGGFWTDFGKDDLSDKKRN 311 (781)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 311 (781)
+ |..+-...+.+........ +-.|-.... .=|-++.+-+. .|+. +...++||
T Consensus 431 ~-~~~~~a~~lr~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~---------~~~~----~~~~~~mk 483 (977)
T PLN02939 431 K-ISNNDAKLLREMVWKRDGRIREAYLSCKG-------------KNEREAVENFL---------KLTL----SGTSSGLH 483 (977)
T ss_pred c-CChhhHHHHHHHHHhhhhhHHHHHHHHhc-------------CchHHHHHHHH---------Hhcc----CCCCCCCE
Confidence 1 1233334444444322110 111111111 00111111111 1211 23367899
Q ss_pred EEEEeCccCCCc--CcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccc----cccccC-CchhhHHHHHHHHHhh
Q 003992 312 VAIVTTASLPWM--TGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYP----NVTFCS-PEEQENYMRNWLEERV 384 (781)
Q Consensus 312 IaI~TtaflP~~--~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p----~i~f~~-p~~qe~yir~~l~~ri 384 (781)
|++||....|+. ||-+-...-....|++.|| +|.||+|.+.......+.. ...+.. ...+..+.+-|.
T Consensus 484 ILfVasE~aP~aKtGGLaDVv~sLPkAL~~~Gh-dV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~---- 558 (977)
T PLN02939 484 IVHIAAEMAPVAKVGGLADVVSGLGKALQKKGH-LVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT---- 558 (977)
T ss_pred EEEEEcccccccccccHHHHHHHHHHHHHHcCC-eEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE----
Confidence 999999999985 4555555667889999996 9999999875322110000 000000 000000000000
Q ss_pred CCcccceeeccC----------C-cc--ccc-ccccCchHhHHhhcc--cCCCcEEEECCCchhHHHHHHH--HHHh-hc
Q 003992 385 GFKADFKISFYP----------G-KF--SKE-RRSIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGK--RWTD-KF 445 (781)
Q Consensus 385 g~~~~~~i~~yP----------~-~~--~~~-~~sil~v~~L~k~I~--~~kPDVIhl~~P~~l~~~~~g~--~~ak-k~ 445 (781)
+...++.+.|+. . .| ... .+..+-......++. .++|||||+|+... +..++.. .+.. .+
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~T-aLV~pll~~~y~~~~~ 637 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQT-AFVAPLYWDLYAPKGF 637 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccH-HHHHHHHHHHHhhccC
Confidence 000112222111 0 01 000 000000011233443 37999999998532 2221111 1111 12
Q ss_pred C--CEEEEEECC-cHH-----HHHHhhcch--h--HHH----HHHHHHHHHHH-hcCCEEEEcChhhhh-c---------
Q 003992 446 N--HVVGVVHTN-YLE-----YIKREKNGA--L--QAF----FVKHINNWVTR-AYCDKVLRLSAATQD-L--------- 498 (781)
Q Consensus 446 ~--pvV~ivHt~-y~~-----y~~~~~~~~--~--~~~----l~k~l~r~l~r-~~aD~VI~vS~~~k~-l--------- 498 (781)
. ++|.++|.. |.. .....+... + ... ++..++-+... .+||.|++||+..++ +
T Consensus 638 ~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~ 717 (977)
T PLN02939 638 NSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQ 717 (977)
T ss_pred CCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchH
Confidence 2 799999975 211 000000000 0 000 01112211111 259999999995432 1
Q ss_pred ------CCCcEEeeCCCCCCCCCCCc-------------------chhhHhhhCcCC---CCcEEEEEeeccCccCHHHH
Q 003992 499 ------PKSVICNVHGVNPKFLQIGE-------------------KVATDREQGQQA---FSKGAYFLGKMVWAKGYREL 550 (781)
Q Consensus 499 ------~~kivvi~nGVD~~~f~p~~-------------------~~~~r~~~Gi~~---~~~~ILfVGRL~~~KGid~L 550 (781)
..++.+|+||||++.|.|.. +...++++|++. +.++++||||+.++||++.|
T Consensus 718 ~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlL 797 (977)
T PLN02939 718 DTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLI 797 (977)
T ss_pred HHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHH
Confidence 13578999999988776642 334577888864 46889999999999999999
Q ss_pred HHHHHHhhccCCCcEEEEEeCCCCH---HHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHH
Q 003992 551 IDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAE 623 (781)
Q Consensus 551 LeA~~~L~~~~p~i~LvIVG~Gp~~---~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLE 623 (781)
++|+..+.. ++++|+|+|+|++. ..++.++.++++. |.|+|..++.. .+|++||+||+||++|+||++++|
T Consensus 798 leA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLE 875 (977)
T PLN02939 798 RHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMI 875 (977)
T ss_pred HHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHH
Confidence 999998764 47999999999864 6788888888765 99999988764 799999999999999999999999
Q ss_pred HHHhCCcEEEeCCCCcceeec----------CCcccc--CCCHHHHHHHHHHHHh----CCCCCCCh---HHHHcCCHHH
Q 003992 624 ALAMGKFVICADHPSNEFFRS----------FPNCLT--YKTSEDFVARVKEALA----NDPQPLTP---EQRYNLSWEA 684 (781)
Q Consensus 624 AMA~G~PVVaSd~gg~g~L~~----------~~ngv~--~~D~eeLa~aI~~LL~----d~~~r~~m---~~~~~fSWe~ 684 (781)
|||||+|+|++++||...++. +.||+. ..|+++|+++|.+++. |++.+.+| .....|||+.
T Consensus 876 AMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFSWe~ 955 (977)
T PLN02939 876 AMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDFSWDS 955 (977)
T ss_pred HHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999998754332 356754 3899999999999875 66666666 3446899999
Q ss_pred HHHHHHHHhhhcccccc
Q 003992 685 ATQRFIEYSELNRILNN 701 (781)
Q Consensus 685 iaerll~~Ye~~~vl~~ 701 (781)
++++|+++|+ +++..
T Consensus 956 ~A~qYeeLY~--~ll~~ 970 (977)
T PLN02939 956 SASQYEELYQ--RAVAR 970 (977)
T ss_pred HHHHHHHHHH--HHHHh
Confidence 9999999999 77643
No 10
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.9e-33 Score=319.17 Aligned_cols=373 Identities=14% Similarity=0.154 Sum_probs=238.5
Q ss_pred CEEEEEeCccCCC--cCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCc
Q 003992 310 RNVAIVTTASLPW--MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFK 387 (781)
Q Consensus 310 ~rIaI~TtaflP~--~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~ 387 (781)
|||+++|+.+.|+ ++|.+.....++..|++.|+ +|++++|++...... .+..... .+ . .+.+-|... . ..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~-~V~v~~p~y~~~~~~--~~~~~~~-~~-~-~~~~~~~~~-~-~~ 72 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGH-DVRVLLPGYPAIREK--LRDAQVV-GR-L-DLFTVLFGH-L-EG 72 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCC-cEEEEecCCcchhhh--hcCceEE-EE-e-eeEEEEEEe-E-Ec
Confidence 7999999999998 67777777788999999996 999999986532100 0000000 00 0 000000000 0 00
Q ss_pred ccceeeccC--------Cccc---cccc-ccCchHhHHhhcc--cCCCcEEEECCCchhHHHHHHHHHHhhc-----C-C
Q 003992 388 ADFKISFYP--------GKFS---KERR-SIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDKF-----N-H 447 (781)
Q Consensus 388 ~~~~i~~yP--------~~~~---~~~~-sil~v~~L~k~I~--~~kPDVIhl~~P~~l~~~~~g~~~akk~-----~-p 447 (781)
.++.+.+.+ ..|. ...+ .++. ..+.+++. ..+|||||+|+. +.+..+ ..+++.+ + |
T Consensus 73 ~gv~v~~v~~~~~~~~~~~y~~~d~~~r~~~f~-~~~~~~~~~~~~~pDiiH~h~w-~~~~~~--~~l~~~~~~~~~~~~ 148 (466)
T PRK00654 73 DGVPVYLIDAPHLFDRPSGYGYPDNGERFAFFS-WAAAEFAEGLDPRPDIVHAHDW-HTGLIP--ALLKEKYWRGYPDIK 148 (466)
T ss_pred CCceEEEEeCHHHcCCCCCCCCcChHHHHHHHH-HHHHHHHHhcCCCCceEEECCc-HHHHHH--HHHHHhhhccCCCCC
Confidence 011111110 0010 0000 0011 11223332 258999999973 333333 2233221 4 9
Q ss_pred EEEEEECCcHH------HHHHhhcc--hh-HHHH--H--HHHHHHHHHhcCCEEEEcChhhhh-c---------------
Q 003992 448 VVGVVHTNYLE------YIKREKNG--AL-QAFF--V--KHINNWVTRAYCDKVLRLSAATQD-L--------------- 498 (781)
Q Consensus 448 vV~ivHt~y~~------y~~~~~~~--~~-~~~l--~--k~l~r~l~r~~aD~VI~vS~~~k~-l--------------- 498 (781)
+|.++|+.... .....+.. .. ...+ + ..+.+...+ ++|.|+++|+..++ +
T Consensus 149 ~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~ 227 (466)
T PRK00654 149 TVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLY-YADRVTTVSPTYAREITTPEFGYGLEGLLRA 227 (466)
T ss_pred EEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHH-hcCcCeeeCHHHHHHhccccCCcChHHHHHh
Confidence 99999975211 00000000 00 0000 0 011122233 69999999996543 2
Q ss_pred -CCCcEEeeCCCCCCCCCCCc-------------------chhhHhhhCcCC-CCcEEEEEeeccCccCHHHHHHHHHHh
Q 003992 499 -PKSVICNVHGVNPKFLQIGE-------------------KVATDREQGQQA-FSKGAYFLGKMVWAKGYRELIDLLAKH 557 (781)
Q Consensus 499 -~~kivvi~nGVD~~~f~p~~-------------------~~~~r~~~Gi~~-~~~~ILfVGRL~~~KGid~LLeA~~~L 557 (781)
..++.+|+||||.+.|.|.. +...++++|+++ +.++++|+||+.++||++.|++|+.++
T Consensus 228 ~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l 307 (466)
T PRK00654 228 RSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPEL 307 (466)
T ss_pred cccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHH
Confidence 12578999999988776532 123466778764 678999999999999999999999998
Q ss_pred hccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEE-EcCCCCCH-HHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEE
Q 003992 558 KNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLN-FQKGRDHA-DDSLHGYKVFINPSISDVLCTATAEALAMGKFVIC 633 (781)
Q Consensus 558 ~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~-FlG~v~~~-e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVa 633 (781)
.++ +++|+|+|+|+. .+.+++++++++..+. +.|+.++. ..+|++||+||+||.+|+||++++||||||+|||+
T Consensus 308 ~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~ 385 (466)
T PRK00654 308 LEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV 385 (466)
T ss_pred Hhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE
Confidence 764 799999999974 4778888888876655 46663332 27899999999999999999999999999999999
Q ss_pred eCCCCcceee-cC------Ccccc--CCCHHHHHHHHHHHHh---CCCCCCCh---HHHHcCCHHHHHHHHHHHhhhccc
Q 003992 634 ADHPSNEFFR-SF------PNCLT--YKTSEDFVARVKEALA---NDPQPLTP---EQRYNLSWEAATQRFIEYSELNRI 698 (781)
Q Consensus 634 Sd~gg~g~L~-~~------~ngv~--~~D~eeLa~aI~~LL~---d~~~r~~m---~~~~~fSWe~iaerll~~Ye~~~v 698 (781)
+++||...++ ++ .+|+. .+|+++|+++|.++++ +++.+.+| .....|||+.++++++++|+ ++
T Consensus 386 ~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~--~~ 463 (466)
T PRK00654 386 RRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEEYLELYR--RL 463 (466)
T ss_pred eCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHHHHHHHH--HH
Confidence 9999886544 34 56654 4899999999999886 44444455 23468999999999999998 65
Q ss_pred c
Q 003992 699 L 699 (781)
Q Consensus 699 l 699 (781)
+
T Consensus 464 ~ 464 (466)
T PRK00654 464 L 464 (466)
T ss_pred h
Confidence 4
No 11
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=4.7e-32 Score=289.37 Aligned_cols=351 Identities=20% Similarity=0.204 Sum_probs=248.7
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|+|+.|+|..+|++......+.+|.+.|+ +|+++++................ ....
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~~~~~~~~~~~-----------------~~~~--- 59 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGH-EVYVVAPSYPGAPEEEEVVVVRP-----------------FRVP--- 59 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCC-eEEEEeCCCCCCCcccccccccc-----------------cccc---
Confidence 69999999999999999888888999999985 99999875332111100000000 0000
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchh-
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL- 468 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~- 468 (781)
..++.. ..........+...++..+||+||++.+...+... ..++++.+ |++.++|+.+..+.........
T Consensus 60 -~~~~~~----~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 132 (374)
T cd03817 60 -TFKYPD----FRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLG--LRVARKLGIPVVATYHTMYEDYTHYVPLGRLL 132 (374)
T ss_pred -cchhhh----hhccccHHHHHHHHHhhcCCCEEEECCchhhhhHH--HHHHHHcCCCEEEEecCCHHHHHHHHhcccch
Confidence 000000 00000111234556788999999999886655443 55666777 9999999987766543322111
Q ss_pred HHHHHH-HHHHHHHHhcCCEEEEcChhhhhc------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 469 QAFFVK-HINNWVTRAYCDKVLRLSAATQDL------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 469 ~~~l~k-~l~r~l~r~~aD~VI~vS~~~k~l------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
...... .+.+.... .+|.++++|+..++. ..++.+++||+|...+.+......+..++...+.+.++|+|++
T Consensus 133 ~~~~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 211 (374)
T cd03817 133 ARAVVRRKLSRRFYN-RCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGRL 211 (374)
T ss_pred hHHHHHHHHHHHHhh-hCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEeee
Confidence 111111 33444444 699999999976652 2346788999998777654433334455556667889999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCC
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVL 617 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~Egf 617 (781)
.+.||++.+++++..+.++.++++++++|+|+..+.+++.+++.++. |.|+|+++..+ .+|+.||++++||..|++
T Consensus 212 ~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~ 291 (374)
T cd03817 212 AKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQ 291 (374)
T ss_pred ecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCc
Confidence 99999999999999998877899999999999999999998877765 99999998665 899999999999999999
Q ss_pred hHHHHHHHHhCCcEEEeCCCCcceeec-CCccccC--CCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHH
Q 003992 618 CTATAEALAMGKFVICADHPSNEFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRF 689 (781)
Q Consensus 618 GlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~~--~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerl 689 (781)
|++++||||||+|||+++.++...+.. +.+|+.. ++. +++++|.++++++..+..| +...+++ .++++
T Consensus 292 ~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 367 (374)
T cd03817 292 GLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKV 367 (374)
T ss_pred ChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999998765443 4566544 444 9999999999999877666 1223333 45666
Q ss_pred HHHhh
Q 003992 690 IEYSE 694 (781)
Q Consensus 690 l~~Ye 694 (781)
.++|+
T Consensus 368 ~~~~~ 372 (374)
T cd03817 368 EKLYE 372 (374)
T ss_pred HHHHh
Confidence 66665
No 12
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.3e-32 Score=299.00 Aligned_cols=344 Identities=13% Similarity=0.052 Sum_probs=231.6
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++|++++ ..||++......+.+|.+.|+ +|++++|.-. . .++ .... . +...+ .|..
T Consensus 1 ki~~~~~~~--~~GGv~~~~~~l~~~l~~~g~-~v~~~~~~~~---~-~~~-----~~~~---~-~~~~~---~g~~--- 58 (372)
T cd03792 1 KVLHVNSTP--YGGGVAEILHSLVPLMRDLGV-DTRWEVIKGD---P-EFF-----NVTK---K-FHNAL---QGAD--- 58 (372)
T ss_pred CeEEEeCCC--CCCcHHHHHHHHHHHHHHcCC-CceEEecCCC---h-hHH-----HHHH---H-hhHhh---cCCC---
Confidence 689998886 468887776778999999996 9999987411 1 000 0000 0 00000 0111
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
+ ..|..+....... ....+.+.+...+|||||+|++....+. .+.+..+ |++.++|+.+..+.
T Consensus 59 -~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dvv~~h~~~~~~~~----~~~~~~~~~~i~~~H~~~~~~~--------- 122 (372)
T cd03792 59 -I-ELSEEEKEIYLEW-NEENAERPLLDLDADVVVIHDPQPLALP----LFKKKRGRPWIWRCHIDLSSPN--------- 122 (372)
T ss_pred -C-CCCHHHHHHHHHH-HHHHhccccccCCCCEEEECCCCchhHH----HhhhcCCCeEEEEeeeecCCCc---------
Confidence 0 1111100000000 0000111345679999999988643221 2222325 88999998653221
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChh-hhh-cCCCcEEeeCCCCCCC-C----CCCcchhhHhhhCcCCCCcEEEEEeecc
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAA-TQD-LPKSVICNVHGVNPKF-L----QIGEKVATDREQGQQAFSKGAYFLGKMV 542 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~-~k~-l~~kivvi~nGVD~~~-f----~p~~~~~~r~~~Gi~~~~~~ILfVGRL~ 542 (781)
....+.+.+++. .+|.+++.|.. ... +..+..+++||||+.. + .+......+.+++++++.++++++||+.
T Consensus 123 ~~~~~~~~~~~~--~~d~~i~~~~~~~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~ 200 (372)
T cd03792 123 RRVWDFLQPYIE--DYDAAVFHLPEYVPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFD 200 (372)
T ss_pred HHHHHHHHHHHH--hCCEEeecHHHhcCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccc
Confidence 112233333333 48888888842 222 3333448899999642 1 1112223456788888889999999999
Q ss_pred CccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-----HHHHHHHHhcCCc--EEEcCCC--CCHH--HHHhcccEEEEc
Q 003992 543 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-----YEVQSAAKRLDLN--LNFQKGR--DHAD--DSLHGYKVFINP 611 (781)
Q Consensus 543 ~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-----~~L~~~a~~lgL~--V~FlG~v--~~~e--~ly~~ADVfVlP 611 (781)
++||++.|++|+..+.+..++++|+|+|+|+.. +.++++.+..++. |.|+|.. ++.+ .+|+.||+|++|
T Consensus 201 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~ 280 (372)
T cd03792 201 PWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQK 280 (372)
T ss_pred cccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeC
Confidence 999999999999999887789999999999752 2344444444443 8999886 4444 899999999999
Q ss_pred cCCCCChHHHHHHHHhCCcEEEeCCCCcce-eecCCccccCCCHHHHHHHHHHHHhCCCCCCCh-----H-HHHcCCHHH
Q 003992 612 SISDVLCTATAEALAMGKFVICADHPSNEF-FRSFPNCLTYKTSEDFVARVKEALANDPQPLTP-----E-QRYNLSWEA 684 (781)
Q Consensus 612 S~~EgfGlviLEAMA~G~PVVaSd~gg~g~-L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m-----~-~~~~fSWe~ 684 (781)
|.+||||++++||||||+|||+++.++... +.++.+|+...++++++.+|.+++++++.+.+| + ..++|||+.
T Consensus 281 s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 281 SIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITR 360 (372)
T ss_pred CCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999999999988754 445677777788999999999999998877776 2 346899999
Q ss_pred HHHHHHHHhh
Q 003992 685 ATQRFIEYSE 694 (781)
Q Consensus 685 iaerll~~Ye 694 (781)
+++++++.|+
T Consensus 361 ~~~~~~~~~~ 370 (372)
T cd03792 361 HLKDYLYLIS 370 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 13
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=5.1e-32 Score=309.06 Aligned_cols=373 Identities=15% Similarity=0.132 Sum_probs=241.6
Q ss_pred CEEEEEeCccCCC--cCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc----c-ccccccCCchhhHHHHHHHHH
Q 003992 310 RNVAIVTTASLPW--MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV----Y-PNVTFCSPEEQENYMRNWLEE 382 (781)
Q Consensus 310 ~rIaI~TtaflP~--~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v----~-p~i~f~~p~~qe~yir~~l~~ 382 (781)
|||+++|..+.|+ .||.+......+..|++.|+ +|.+++|.+........ . ....+... .+..+++-|...
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~-~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGH-DVRVLLPAYGCIEDEVDDQVKVVELVDLSVG-PRTLYVKVFEGV 78 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCC-eEEEEecCCcChhhhhccCeEEEEEEEEeec-CceeEEEEEEEE
Confidence 8999999999998 67777777778999999996 99999997654221100 0 00000000 000000000000
Q ss_pred hhCCcccceeeccC--------C-ccc----ccc-cccCchHhHHhhcc--cCCCcEEEECCCchhHHHHHHHHHHhhc-
Q 003992 383 RVGFKADFKISFYP--------G-KFS----KER-RSIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDKF- 445 (781)
Q Consensus 383 rig~~~~~~i~~yP--------~-~~~----~~~-~sil~v~~L~k~I~--~~kPDVIhl~~P~~l~~~~~g~~~akk~- 445 (781)
. .++.+.+.. + .|. ... +.++-.....++++ ..+|||||+|+.. .+..+ ..+...+
T Consensus 79 ~----~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~-~~~~~--~~l~~~~~ 151 (473)
T TIGR02095 79 V----EGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWH-TALVP--ALLKAVYR 151 (473)
T ss_pred E----CCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcH-HHHHH--HHHHhhcc
Confidence 0 011111110 0 010 000 00000112233333 3689999999843 33322 2222222
Q ss_pred ---CCEEEEEECCcHH-HH-H--HhhcchhHHHH-H--------HHHHHHHHHhcCCEEEEcChhhhh-c----------
Q 003992 446 ---NHVVGVVHTNYLE-YI-K--REKNGALQAFF-V--------KHINNWVTRAYCDKVLRLSAATQD-L---------- 498 (781)
Q Consensus 446 ---~pvV~ivHt~y~~-y~-~--~~~~~~~~~~l-~--------k~l~r~l~r~~aD~VI~vS~~~k~-l---------- 498 (781)
.|+|.++|+.... .. . ....+.....+ . ..+.+...+ +||.|+++|+..++ +
T Consensus 152 ~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~ad~v~tVS~~~~~ei~~~~~~~~l~ 230 (473)
T TIGR02095 152 PNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIV-YADRVTTVSPTYAREILTPEFGYGLD 230 (473)
T ss_pred CCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHH-hCCcCeecCHhHHHHhcCCcCCccch
Confidence 3899999975311 00 0 00000000000 0 011222333 69999999996433 2
Q ss_pred ------CCCcEEeeCCCCCCCCCCCc-------------------chhhHhhhCcCC--CCcEEEEEeeccCccCHHHHH
Q 003992 499 ------PKSVICNVHGVNPKFLQIGE-------------------KVATDREQGQQA--FSKGAYFLGKMVWAKGYRELI 551 (781)
Q Consensus 499 ------~~kivvi~nGVD~~~f~p~~-------------------~~~~r~~~Gi~~--~~~~ILfVGRL~~~KGid~LL 551 (781)
..++.+|+||||.+.+.|.. +...++++|++. +.++++|+||+.++||++.|+
T Consensus 231 ~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li 310 (473)
T TIGR02095 231 GVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLL 310 (473)
T ss_pred hHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHH
Confidence 13678999999988776532 123466778765 678999999999999999999
Q ss_pred HHHHHhhccCCCcEEEEEeCCC--CHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHh
Q 003992 552 DLLAKHKNDLDGFKLDVFGNGE--DAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAM 627 (781)
Q Consensus 552 eA~~~L~~~~p~i~LvIVG~Gp--~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~ 627 (781)
+|+.++.+. +++|+|+|+|+ ..+.+++++.+++.++.|++..++.. .+|++||+|++||.+|+||++++|||+|
T Consensus 311 ~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~ 388 (473)
T TIGR02095 311 AALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRY 388 (473)
T ss_pred HHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHC
Confidence 999999764 59999999995 34778888877776687877766654 7999999999999999999999999999
Q ss_pred CCcEEEeCCCCcceeec-C------Ccccc--CCCHHHHHHHHHHHHh----CCCCCCCh---HHHHcCCHHHHHHHHHH
Q 003992 628 GKFVICADHPSNEFFRS-F------PNCLT--YKTSEDFVARVKEALA----NDPQPLTP---EQRYNLSWEAATQRFIE 691 (781)
Q Consensus 628 G~PVVaSd~gg~g~L~~-~------~ngv~--~~D~eeLa~aI~~LL~----d~~~r~~m---~~~~~fSWe~iaerll~ 691 (781)
|+|||++++||...++. + .+|+. ..|+++++++|.+++. +++.+.+| ...+.|||+.+++++++
T Consensus 389 G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 468 (473)
T TIGR02095 389 GTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDKSAKQYVE 468 (473)
T ss_pred CCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 99999999998865443 3 56654 4899999999999987 77666666 23468999999999999
Q ss_pred Hhh
Q 003992 692 YSE 694 (781)
Q Consensus 692 ~Ye 694 (781)
+|+
T Consensus 469 ~Y~ 471 (473)
T TIGR02095 469 LYR 471 (473)
T ss_pred HHH
Confidence 998
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=8.8e-32 Score=295.91 Aligned_cols=348 Identities=16% Similarity=0.145 Sum_probs=232.2
Q ss_pred CEEEEEeCccCCCc-CcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcc
Q 003992 310 RNVAIVTTASLPWM-TGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKA 388 (781)
Q Consensus 310 ~rIaI~TtaflP~~-~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~ 388 (781)
|||+++|..|+|.. +|++......+..|.+. + +|++++..........+ +...+.. |.
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~-~v~v~~~~~~~~~~~~~-~~~~~~~----------~~-------- 59 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-M-DVDVRCFGDQRFDSEGL-TVKGYRP----------WS-------- 59 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-c-CeeEEcCCCchhcCCCe-EEEEecC----------hh--------
Confidence 79999999999987 77776667778899886 3 77776532110000000 0000000 00
Q ss_pred cceeeccCCcccccccccCch-HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcc
Q 003992 389 DFKISFYPGKFSKERRSIIPA-GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 466 (781)
Q Consensus 389 ~~~i~~yP~~~~~~~~sil~v-~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~ 466 (781)
........+... .++.......++||||++.+... ..+ ...++..+ |++.++|+.++.........
T Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~divh~~~~~~~-~~~--~~~~~~~~~p~v~~~h~~~~~~~~~~~~~ 127 (388)
T TIGR02149 60 ---------ELKEANKALGTFSVDLAMANDPVDADVVHSHTWYTF-LAG--HLAKKLYDKPLVVTAHSLEPLRPWKEEQL 127 (388)
T ss_pred ---------hccchhhhhhhhhHHHHHhhCCCCCCeEeecchhhh-hHH--HHHHHhcCCCEEEEeeccccccccccccc
Confidence 000000000000 11222223357999999875432 221 22334445 99999997643210000000
Q ss_pred hhHHHHHHHHHHHHHHhcCCEEEEcChhhhh-----c----CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEE
Q 003992 467 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD-----L----PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYF 537 (781)
Q Consensus 467 ~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~-----l----~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILf 537 (781)
.....+...+++...+ .+|.|+++|+.+++ + ..++.+++||+|+..+.+......+.+++++++.++++|
T Consensus 128 ~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (388)
T TIGR02149 128 GGGYKLSSWAEKTAIE-AADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYILF 206 (388)
T ss_pred ccchhHHHHHHHHHHh-hCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEEE
Confidence 0001122334444444 69999999997654 1 135678999999887766554555677887777889999
Q ss_pred EeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH----HHHHHHHHhcCC---cEEEc-CCCCCHH--HHHhcccE
Q 003992 538 LGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA----YEVQSAAKRLDL---NLNFQ-KGRDHAD--DSLHGYKV 607 (781)
Q Consensus 538 VGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~----~~L~~~a~~lgL---~V~Fl-G~v~~~e--~ly~~ADV 607 (781)
+||+.+.||++.|++++.++. ++++++++|+|++. +.+++.+..++. .|.|+ |.++..+ .+|+.||+
T Consensus 207 ~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv 283 (388)
T TIGR02149 207 VGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEV 283 (388)
T ss_pred EcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCE
Confidence 999999999999999999884 46889999988764 445555555554 26665 5666655 89999999
Q ss_pred EEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCcccc--CCCH------HHHHHHHHHHHhCCCCCCCh----
Q 003992 608 FINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLT--YKTS------EDFVARVKEALANDPQPLTP---- 674 (781)
Q Consensus 608 fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~--~~D~------eeLa~aI~~LL~d~~~r~~m---- 674 (781)
||+||.+|+||++++||||||+|||+++.|+..+++. +.+|+. .+|+ ++++++|.++++|++.+.+|
T Consensus 284 ~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a 363 (388)
T TIGR02149 284 FVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAG 363 (388)
T ss_pred EEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999999999999999999998866543 445533 4677 89999999999998877776
Q ss_pred --HHHHcCCHHHHHHHHHHHhh
Q 003992 675 --EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 675 --~~~~~fSWe~iaerll~~Ye 694 (781)
...++|||+.+++++++.|+
T Consensus 364 ~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 364 RKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 13467999999999999998
No 15
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.4e-31 Score=303.04 Aligned_cols=354 Identities=16% Similarity=0.174 Sum_probs=226.0
Q ss_pred CCCcCcccccHHHHHHHHHHcCC-CEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccceeeccCCc
Q 003992 320 LPWMTGTAVNPLFRAAYLAKTEQ-QNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADFKISFYPGK 398 (781)
Q Consensus 320 lP~~~G~av~~l~rA~~Lak~G~-~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~~i~~yP~~ 398 (781)
-|..+|+++.....|..|+++|| ++|++++.....+. +++. +..+.. . ...|++ -.++.+.+..
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~---~~~~--~~~~~~--~-------~~~gv~-v~r~~~~~~~ 86 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAK---VSPD--YAQPIE--R-------IAPGAR-IVRLPFGPRR 86 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcC---CCCc--cCCCee--E-------eCCCcE-EEEecCCCCC
Confidence 48889999888888999999986 59999986432210 0010 000000 0 001111 0111111111
Q ss_pred ccccccccCc-----hHhHHhhccc--CCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHh-hcchhH
Q 003992 399 FSKERRSIIP-----AGDTSQFIPS--KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKRE-KNGALQ 469 (781)
Q Consensus 399 ~~~~~~sil~-----v~~L~k~I~~--~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~-~~~~~~ 469 (781)
+.. .....+ ...+.+.+++ .+|||||+|... .++.+ ..+++..+ |+|.+.|+......... ..+...
T Consensus 87 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~-~~~~~--~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~ 162 (439)
T TIGR02472 87 YLR-KELLWPYLDELADNLLQHLRQQGHLPDLIHAHYAD-AGYVG--ARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKP 162 (439)
T ss_pred CcC-hhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchh-HHHHH--HHHHHHhCCCEEEecccccchhhhhcccCCCCh
Confidence 111 000011 1245566654 379999999743 34433 45556666 99999997432211100 000000
Q ss_pred ---HHHHH-----HHHHHHHHhcCCEEEEcChhh-hh-------c-CCCcEEeeCCCCCCCCCCCcchh-------hHhh
Q 003992 470 ---AFFVK-----HINNWVTRAYCDKVLRLSAAT-QD-------L-PKSVICNVHGVNPKFLQIGEKVA-------TDRE 525 (781)
Q Consensus 470 ---~~l~k-----~l~r~l~r~~aD~VI~vS~~~-k~-------l-~~kivvi~nGVD~~~f~p~~~~~-------~r~~ 525 (781)
..++. ..+++..+ .+|.||++|... ++ . +.++.+|+||||++.|.+..... ..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~ 241 (439)
T TIGR02472 163 QQIEKQYNISRRIEAEEETLA-HASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAP 241 (439)
T ss_pred hhhhhhcchHHHHHHHHHHHH-hCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHh
Confidence 00001 12344444 699999999642 22 1 24688999999988776532111 1123
Q ss_pred hCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEE-EEeCCCCHH-----------HHHHHHHhcCCc--EEE
Q 003992 526 QGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLD-VFGNGEDAY-----------EVQSAAKRLDLN--LNF 591 (781)
Q Consensus 526 ~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~Lv-IVG~Gp~~~-----------~L~~~a~~lgL~--V~F 591 (781)
++..++.++++|+||+.+.||++.||+|+..+.....+.+++ |+|+|++.+ +++.++.+.++. |.|
T Consensus 242 ~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f 321 (439)
T TIGR02472 242 FLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAY 321 (439)
T ss_pred hccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEe
Confidence 445556789999999999999999999998653211223333 678887642 234456667776 999
Q ss_pred cCCCCCHH--HHHhcc----cEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHH
Q 003992 592 QKGRDHAD--DSLHGY----KVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVK 662 (781)
Q Consensus 592 lG~v~~~e--~ly~~A----DVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~ 662 (781)
+|+++..+ .+|+.| |+||+||.+|+||++++||||||+|||+|+.|+..+++. +.+|+ ..+|+++|+++|.
T Consensus 322 ~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~ 401 (439)
T TIGR02472 322 PKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALE 401 (439)
T ss_pred cCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 99876554 888876 999999999999999999999999999999998866544 45664 4589999999999
Q ss_pred HHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHh
Q 003992 663 EALANDPQPLTP------EQRYNLSWEAATQRFIEYS 693 (781)
Q Consensus 663 ~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Y 693 (781)
++++|+..+.+| ...++|||+.++++++++.
T Consensus 402 ~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 402 DALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999887777 2346899999999998865
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.4e-31 Score=292.12 Aligned_cols=344 Identities=11% Similarity=0.080 Sum_probs=237.1
Q ss_pred CCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcc
Q 003992 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKA 388 (781)
Q Consensus 309 ~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~ 388 (781)
+.+|+.+...+ ..+|.+...+..+.+|.+.|+ ++++++- ...+. + ...+ ...|+.
T Consensus 1 ~~~il~ii~~~--~~GG~e~~~~~l~~~l~~~~~-~~~v~~~--~~~~~---~---------------~~~~-~~~~i~- 55 (374)
T TIGR03088 1 RPLIVHVVYRF--DVGGLENGLVNLINHLPADRY-RHAVVAL--TEVSA---F---------------RKRI-QRPDVA- 55 (374)
T ss_pred CceEEEEeCCC--CCCcHHHHHHHHHhhcccccc-ceEEEEc--CCCCh---h---------------HHHH-HhcCce-
Confidence 35788887766 357776666677889988876 7777651 11110 0 0011 011221
Q ss_pred cceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcH-HHHHHhhcc
Q 003992 389 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL-EYIKREKNG 466 (781)
Q Consensus 389 ~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~-~y~~~~~~~ 466 (781)
+..++... ...+.....+.+++++.+|||||++++..+. . ...++..+ +. ++|+... .......
T Consensus 56 ---~~~~~~~~---~~~~~~~~~l~~~l~~~~~Divh~~~~~~~~--~--~~~~~~~~~~~--~i~~~h~~~~~~~~~-- 121 (374)
T TIGR03088 56 ---FYALHKQP---GKDVAVYPQLYRLLRQLRPDIVHTRNLAALE--A--QLPAALAGVPA--RIHGEHGRDVFDLDG-- 121 (374)
T ss_pred ---EEEeCCCC---CCChHHHHHHHHHHHHhCCCEEEEcchhHHH--H--HHHHHhcCCCe--EEEeecCcccccchh--
Confidence 11111110 0111223467888999999999999754321 1 22233334 43 3343210 0100000
Q ss_pred hhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-------C-CCcEEeeCCCCCCCCCCCcch--hhHhhhCcCCCCcEEE
Q 003992 467 ALQAFFVKHINNWVTRAYCDKVLRLSAATQDL-------P-KSVICNVHGVNPKFLQIGEKV--ATDREQGQQAFSKGAY 536 (781)
Q Consensus 467 ~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-------~-~kivvi~nGVD~~~f~p~~~~--~~r~~~Gi~~~~~~IL 536 (781)
..+.+..+.++..+ .+|.++++|+.+++. + .++.+++||||++.+.+.... ..........+.++++
T Consensus 122 --~~~~~~~~~~~~~~-~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (374)
T TIGR03088 122 --SNWKYRWLRRLYRP-LIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVG 198 (374)
T ss_pred --hHHHHHHHHHHHHh-cCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEE
Confidence 11223344444444 689999999976652 1 246789999998777553211 1122233345677899
Q ss_pred EEeeccCccCHHHHHHHHHHhhccCC----CcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEE
Q 003992 537 FLGKMVWAKGYRELIDLLAKHKNDLD----GFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFIN 610 (781)
Q Consensus 537 fVGRL~~~KGid~LLeA~~~L~~~~p----~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVl 610 (781)
|+||+.++||++.|++|+..+.++.+ +++|+++|+|+..+.+++.++++++. |.|+|..++...+|+.||+||+
T Consensus 199 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ 278 (374)
T TIGR03088 199 TVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVL 278 (374)
T ss_pred EEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEe
Confidence 99999999999999999999877654 78999999999999999999988887 8999998888899999999999
Q ss_pred ccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCC
Q 003992 611 PSISDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDPQPLTP------EQRYNLS 681 (781)
Q Consensus 611 PS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fS 681 (781)
||..||||++++||||||+|||+|+.|+...++. +.+|+ ..+|+++++++|.+++++++.+..| ...++||
T Consensus 279 pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 358 (374)
T TIGR03088 279 PSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFS 358 (374)
T ss_pred ccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998866543 44553 3489999999999999988776666 2347999
Q ss_pred HHHHHHHHHHHhh
Q 003992 682 WEAATQRFIEYSE 694 (781)
Q Consensus 682 We~iaerll~~Ye 694 (781)
|+.+++++++.|+
T Consensus 359 ~~~~~~~~~~~y~ 371 (374)
T TIGR03088 359 INAMVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
No 17
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.3e-31 Score=300.78 Aligned_cols=265 Identities=13% Similarity=0.134 Sum_probs=202.4
Q ss_pred HHhhcccCCCcEEEECCCchhHHHHHHHHHHh--hcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 412 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTD--KFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~ak--k~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
+.+.+++.+||+||+|.... ++.. ..+++ ..+ +++.++|..... ... ........ .+.+.+ .+|.|
T Consensus 110 ~~~~~~~~~~diihaH~~~~-~~~~--~~~~~~~~~~~~~~~t~Hg~d~~-~~~-----~~~~~~~~-~~~~~~-~ad~v 178 (406)
T PRK15427 110 CAQVATPFVADVFIAHFGPA-GVTA--AKLRELGVLRGKIATIFHGIDIS-SRE-----VLNHYTPE-YQQLFR-RGDLM 178 (406)
T ss_pred HhhhhccCCCCEEEEcCChH-HHHH--HHHHHhCCCCCCeEEEEcccccc-cch-----hhhhhhHH-HHHHHH-hCCEE
Confidence 34556788999999987533 2322 22332 233 778899963211 000 00001111 122223 59999
Q ss_pred EEcChhhhhc-------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccC
Q 003992 489 LRLSAATQDL-------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDL 561 (781)
Q Consensus 489 I~vS~~~k~l-------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~ 561 (781)
+++|+..++. ..++.+++||||++.|.+.... .......++|+||+.+.||++.+++|++.+.++.
T Consensus 179 v~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~-------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 251 (406)
T PRK15427 179 LPISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVK-------APATPLEIISVARLTEKKGLHVAIEACRQLKEQG 251 (406)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCccc-------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC
Confidence 9999976652 1256789999998877543211 0123467899999999999999999999998888
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCC------CCChHHHHHHHHhCCcE
Q 003992 562 DGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS------DVLCTATAEALAMGKFV 631 (781)
Q Consensus 562 p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~------EgfGlviLEAMA~G~PV 631 (781)
++++++|+|+|+..+++++.++++++. |.|+|++++.+ ++|+.||+||+||.. ||+|++++||||||+||
T Consensus 252 ~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PV 331 (406)
T PRK15427 252 VAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPV 331 (406)
T ss_pred CCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCE
Confidence 899999999999999999999999886 99999998776 899999999999984 99999999999999999
Q ss_pred EEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHh-CCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 632 ICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALA-NDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 632 VaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~-d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
|+|++||..+++. +.+|+ ..+|+++++++|.++++ |++.+.+| ...++|+|+.+++++.+.|+
T Consensus 332 I~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 332 VSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999876554 55663 34899999999999999 88777777 24578999999999999997
No 18
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=3e-31 Score=292.12 Aligned_cols=350 Identities=14% Similarity=0.102 Sum_probs=231.7
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
|||++++..+. .+|.+...+..|..|++.|| +|+++++...... .+... .. -++.-.
T Consensus 1 mkIl~~~~~~~--~gG~e~~~~~la~~L~~~G~-~V~v~~~~~~~~~---~~~~~----~~-------------~~~~i~ 57 (392)
T cd03805 1 LRVAFIHPDLG--IGGAERLVVDAALALQSRGH-EVTIYTSHHDPSH---CFEET----KD-------------GTLPVR 57 (392)
T ss_pred CeEEEECCCCC--CchHHHHHHHHHHHHHhCCC-eEEEEcCCCCchh---cchhc----cC-------------CeeEEE
Confidence 79999976653 57878777888999999995 9999986311100 00000 00 000000
Q ss_pred ceeeccCCccccccccc---Cch--HhHH-hhcccCCCcEEEECCCchhHHHHHHHHHHhhcCCEEEEEECCcHHHHHHh
Q 003992 390 FKISFYPGKFSKERRSI---IPA--GDTS-QFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKRE 463 (781)
Q Consensus 390 ~~i~~yP~~~~~~~~si---l~v--~~L~-k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~pvV~ivHt~y~~y~~~~ 463 (781)
+...++|.........+ +.. ..+. ..+...++||||++......++ .....+ .+++.++|.. ......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~---~~~~~~-~~~i~~~h~~--~~~~~~ 131 (392)
T cd03805 58 VRGDWLPRSIFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPL---LKLFSP-SKILFYCHFP--DQLLAQ 131 (392)
T ss_pred EEeEEEcchhhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHH---HHHhcC-CcEEEEEecC--hHHhcC
Confidence 00000111000000000 000 0011 1356679999999864332111 111111 3888888842 221111
Q ss_pred hcchhH---HHHHHHHHHHHHHhcCCEEEEcChhhhhc-----C---CC-cEEeeCCCCCCCCCCCcchhhHhhhCcCCC
Q 003992 464 KNGALQ---AFFVKHINNWVTRAYCDKVLRLSAATQDL-----P---KS-VICNVHGVNPKFLQIGEKVATDREQGQQAF 531 (781)
Q Consensus 464 ~~~~~~---~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~---~k-ivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~ 531 (781)
...... ......++++..+ .+|.|+++|+.+++. . .+ +.+++||+|.+.+.+.............++
T Consensus 132 ~~~~~~~~~~~~~~~~e~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~~~~ 210 (392)
T cd03805 132 RGSLLKRLYRKPFDWLEEFTTG-MADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSG 210 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHhh-CceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccccccCCC
Confidence 111111 1223445555555 799999999977662 1 12 248899999877755332212223334556
Q ss_pred CcEEEEEeeccCccCHHHHHHHHHHhhccC---CCcEEEEEeCCCCH--------HHHHHHHHh-cCCc--EEEcCCCCC
Q 003992 532 SKGAYFLGKMVWAKGYRELIDLLAKHKNDL---DGFKLDVFGNGEDA--------YEVQSAAKR-LDLN--LNFQKGRDH 597 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGid~LLeA~~~L~~~~---p~i~LvIVG~Gp~~--------~~L~~~a~~-lgL~--V~FlG~v~~ 597 (781)
.+.++|+||+.+.||++.+++++.++.++. ++++|+++|+|+.. +++++.+++ ++++ |.|+|++++
T Consensus 211 ~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~ 290 (392)
T cd03805 211 KKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISD 290 (392)
T ss_pred ceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCCh
Confidence 788999999999999999999999998876 89999999998763 678888888 7775 999999998
Q ss_pred HH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceee-cCCcccc-CCCHHHHHHHHHHHHhCCCCCCC
Q 003992 598 AD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLT-YKTSEDFVARVKEALANDPQPLT 673 (781)
Q Consensus 598 ~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~~ngv~-~~D~eeLa~aI~~LL~d~~~r~~ 673 (781)
.+ .+|+.||++++||..|+||++++||||||+|||++++|+...++ ++.+|+. ..|+++++++|.+++++++.+.+
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADR 370 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHH
Confidence 86 89999999999999999999999999999999999999875433 4455643 37999999999999999987777
Q ss_pred h------HHHHcCCHHHHHHHH
Q 003992 674 P------EQRYNLSWEAATQRF 689 (781)
Q Consensus 674 m------~~~~~fSWe~iaerl 689 (781)
| ...++|||+.+++++
T Consensus 371 ~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 371 MGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHhcCHHHHhhhC
Confidence 7 235789999998764
No 19
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=8.3e-31 Score=279.32 Aligned_cols=354 Identities=19% Similarity=0.141 Sum_probs=238.4
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++++..|.|..+|.+......+.+|.+.|+ +|+++++.-...... .. ....+.. .....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~~~--~~--~~~~~~~-------------~~~~~- 61 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGH-EVTVATTDAGGDPLL--VA--LNGVPVK-------------LFSIN- 61 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCC-cEEEEecCCCCccch--hh--ccCceee-------------ecccc-
Confidence 69999999999999988877888999999986 999998642211100 00 0000000 00000
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
....+... .................+||+||++++....... ...++++.+ |++...|+.+..+... .....
T Consensus 62 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~ 134 (375)
T cd03821 62 -VAYGLNLA---RYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWALP--HKALK 134 (375)
T ss_pred -hhhhhhhh---hhccChhHHHHHHHhCCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEccccccccccc--cchhh
Confidence 00000000 0000001112223345689999999864433322 244555566 9998989765443211 11112
Q ss_pred HHHHH-HHHHHHHHhcCCEEEEcChhhhh------cCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeecc
Q 003992 470 AFFVK-HINNWVTRAYCDKVLRLSAATQD------LPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMV 542 (781)
Q Consensus 470 ~~l~k-~l~r~l~r~~aD~VI~vS~~~k~------l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~ 542 (781)
..+.. ...+...+ .++.+++.|..... ...++.+++||+|...+.+......+...+...+.+.++|+|++.
T Consensus 135 ~~~~~~~~~~~~~~-~~~~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 213 (375)
T cd03821 135 KRLAWFLFERRLLQ-AAAAVHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRLH 213 (375)
T ss_pred hHHHHHHHHHHHHh-cCCEEEECCHHHHHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCcc
Confidence 22222 22333333 58999999875433 123678899999977665433222244455566788999999999
Q ss_pred CccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH--HHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCC
Q 003992 543 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDV 616 (781)
Q Consensus 543 ~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~--~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~Eg 616 (781)
+.||++.+++++.++.++.++++|+++|.|+.. ..++..+++.++. |.|+|++++.+ .+|+.||++|+||..|+
T Consensus 214 ~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~ 293 (375)
T cd03821 214 PKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSEN 293 (375)
T ss_pred hhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCC
Confidence 999999999999999988899999999987543 4555555667765 99999999665 89999999999999999
Q ss_pred ChHHHHHHHHhCCcEEEeCCCCcceeecCCccc-cCCCHHHHHHHHHHHHhCCCCCCCh-----H-HHHcCCHHHHHHHH
Q 003992 617 LCTATAEALAMGKFVICADHPSNEFFRSFPNCL-TYKTSEDFVARVKEALANDPQPLTP-----E-QRYNLSWEAATQRF 689 (781)
Q Consensus 617 fGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv-~~~D~eeLa~aI~~LL~d~~~r~~m-----~-~~~~fSWe~iaerl 689 (781)
||++++||||||+|||+++.++...+.....++ ...++++++++|.++++++..+..+ + ..++|||+.+++++
T Consensus 294 ~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 294 FGIVVAEALACGTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred CCcHHHHHHhcCCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 999999999999999999999876554444443 3367799999999999998776666 2 36899999999988
Q ss_pred HH
Q 003992 690 IE 691 (781)
Q Consensus 690 l~ 691 (781)
++
T Consensus 374 ~~ 375 (375)
T cd03821 374 LE 375 (375)
T ss_pred hC
Confidence 63
No 20
>PLN02316 synthase/transferase
Probab=100.00 E-value=3e-31 Score=319.71 Aligned_cols=359 Identities=13% Similarity=0.110 Sum_probs=236.1
Q ss_pred CCCCEEEEEeCccCCCc--CcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc--ccc-ccccCCchhhHHHHHHHH
Q 003992 307 DKKRNVAIVTTASLPWM--TGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV--YPN-VTFCSPEEQENYMRNWLE 381 (781)
Q Consensus 307 ~~~~rIaI~TtaflP~~--~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v--~p~-i~f~~p~~qe~yir~~l~ 381 (781)
.++|||+++|..+.|+. ||-+.....++..|++.|| +|.|++|.+.......+ ... ..+.. ... .++-|
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh-~V~VitP~Y~~i~~~~~~~~~~~~~~~~-~~~--~~~v~-- 658 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNH-NVDIILPKYDCLNLSHVKDLHYQRSYSW-GGT--EIKVW-- 658 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCC-EEEEEecCCcccchhhcccceEEEEecc-CCE--EEEEE--
Confidence 45699999999999974 5666666778889999996 99999997653111000 000 00000 000 00000
Q ss_pred HhhCCcccceeeccCC---ccccc---------ccccCchHhHHhhcc--cCCCcEEEECCCchhHHHHHHHHHHhh---
Q 003992 382 ERVGFKADFKISFYPG---KFSKE---------RRSIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDK--- 444 (781)
Q Consensus 382 ~rig~~~~~~i~~yP~---~~~~~---------~~sil~v~~L~k~I~--~~kPDVIhl~~P~~l~~~~~g~~~akk--- 444 (781)
.+...++.+.+... .|... .+..+-......++. ..+|||||+|+- +.++.+ ..+...
T Consensus 659 --~~~~~GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW-~talva--~llk~~~~~ 733 (1036)
T PLN02316 659 --FGKVEGLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDW-SSAPVA--WLFKDHYAH 733 (1036)
T ss_pred --EEEECCcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCC-hHHHHH--HHHHHhhhh
Confidence 00001122221110 11000 000000011223332 368999999974 223322 112221
Q ss_pred ---cC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhh-c------C---CCcEEeeCCCC
Q 003992 445 ---FN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD-L------P---KSVICNVHGVN 510 (781)
Q Consensus 445 ---~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~-l------~---~kivvi~nGVD 510 (781)
.+ |+|.++|... |.. . .+... .. +||.|+++|+..++ + . .++.+|+||||
T Consensus 734 ~~~~~~p~V~TiHnl~--~~~--------n----~lk~~-l~-~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID 797 (1036)
T PLN02316 734 YGLSKARVVFTIHNLE--FGA--------N----HIGKA-MA-YADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGID 797 (1036)
T ss_pred hccCCCCEEEEeCCcc--cch--------h----HHHHH-HH-HCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCcc
Confidence 23 8999999642 210 1 11122 22 69999999996543 1 1 36789999999
Q ss_pred CCCCCCCc--------------------chhhHhhhCcCC-CCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEE
Q 003992 511 PKFLQIGE--------------------KVATDREQGQQA-FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVF 569 (781)
Q Consensus 511 ~~~f~p~~--------------------~~~~r~~~Gi~~-~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIV 569 (781)
+..|.|.. +...++++|++. +.++++|||||.++||++.|++|+.++.+ .+++|+|+
T Consensus 798 ~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIv 875 (1036)
T PLN02316 798 PDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLL 875 (1036)
T ss_pred ccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEE
Confidence 87665431 122466788873 67899999999999999999999999865 37999999
Q ss_pred eCCCCH---HHHHHHHHhcCC----cEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcc
Q 003992 570 GNGEDA---YEVQSAAKRLDL----NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE 640 (781)
Q Consensus 570 G~Gp~~---~~L~~~a~~lgL----~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g 640 (781)
|+||+. ..++++++++++ .|.|+|..++.. .+|++||+||+||++|+||++.+|||+||+|+|++++||..
T Consensus 876 G~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~ 955 (1036)
T PLN02316 876 GSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLF 955 (1036)
T ss_pred eCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcH
Confidence 999874 678888887765 288888776653 69999999999999999999999999999999999999986
Q ss_pred eeec--------------CCccccC--CCHHHHHHHHHHHHhCC-CCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 641 FFRS--------------FPNCLTY--KTSEDFVARVKEALAND-PQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 641 ~L~~--------------~~ngv~~--~D~eeLa~aI~~LL~d~-~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
..+. +.+|+.+ .|+++|+.+|.+++.+. ..+..+ .....|||+.++++|+++|+
T Consensus 956 DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 956 DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 5432 1466544 79999999999999864 323332 23468999999999999998
No 21
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=5.4e-31 Score=281.99 Aligned_cols=320 Identities=16% Similarity=0.106 Sum_probs=230.4
Q ss_pred CEEEEEeCccC----CCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhC
Q 003992 310 RNVAIVTTASL----PWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVG 385 (781)
Q Consensus 310 ~rIaI~Ttafl----P~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig 385 (781)
|||+++|+.+. |..||+.......+.+|.+.|| +|+++++.-...... .. ... +.
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~-~V~v~~~~~~~~~~~-~~---~~~-~~--------------- 59 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGH-EVTLFASGDSKTAAP-LV---PVV-PE--------------- 59 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCc-eEEEEecCCCCcccc-ee---ecc-CC---------------
Confidence 89999999884 4888888878888999999985 999998753211100 00 000 00
Q ss_pred CcccceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhh
Q 003992 386 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREK 464 (781)
Q Consensus 386 ~~~~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~ 464 (781)
. ..... +. ...........+.+.+++.+|||||++.+....+ +++..+ |++.++|.....+..
T Consensus 60 -~--~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~------~~~~~~~~~v~~~h~~~~~~~~--- 123 (335)
T cd03802 60 -P--LRLDA-PG---RDRAEAEALALAERALAAGDFDIVHNHSLHLPLP------FARPLPVPVVTTLHGPPDPELL--- 123 (335)
T ss_pred -C--ccccc-ch---hhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh------hhcccCCCEEEEecCCCCcccc---
Confidence 0 00000 00 0000111223467788889999999998655432 233445 999999976533221
Q ss_pred cchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcC---CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 465 NGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLP---KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 465 ~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~---~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
. ........+.++++|+..++.. .++.+++||+|.+.+.+.. ..+..++|+||+
T Consensus 124 -----~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~~-----------~~~~~i~~~Gr~ 180 (335)
T cd03802 124 -----K-------LYYAARPDVPFVSISDAQRRPWPPLPWVATVHNGIDLDDYPFRG-----------PKGDYLLFLGRI 180 (335)
T ss_pred -----h-------HHHhhCcCCeEEEecHHHHhhcccccccEEecCCcChhhCCCCC-----------CCCCEEEEEEee
Confidence 0 0111224788999999776633 3678999999988775421 135678999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcC---CcEEEcCCCCCHH--HHHhcccEEEEccC-CC
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLD---LNLNFQKGRDHAD--DSLHGYKVFINPSI-SD 615 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lg---L~V~FlG~v~~~e--~ly~~ADVfVlPS~-~E 615 (781)
.+.||++.+++++.+ .+++|+|+|+|+....+.....+.. -.|.|+|++++.+ .+|+.+|++++||. .|
T Consensus 181 ~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E 255 (335)
T cd03802 181 SPEKGPHLAIRAARR-----AGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEE 255 (335)
T ss_pred ccccCHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccC
Confidence 999999999999865 3689999999998877776665543 3499999999875 89999999999998 59
Q ss_pred CChHHHHHHHHhCCcEEEeCCCCcceeec-CCccccCCCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHhh
Q 003992 616 VLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 616 gfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Ye 694 (781)
+||++++||||||+|||++|.|+...+.. +.+|+...++++++++|.+++.......+....++|||+.++++++++|+
T Consensus 256 ~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 256 PFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred CcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999999876555 45777777799999999999765432222245689999999999999985
No 22
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.2e-30 Score=281.93 Aligned_cols=342 Identities=16% Similarity=0.152 Sum_probs=227.4
Q ss_pred EEEEEeCc-cCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 311 NVAIVTTA-SLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 311 rIaI~Tta-flP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
||||+++. |+|..+|++......|.+|.+.|+ +|+++++.-........+. |+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~-~v~v~~~~~~~~~~~~~~~----------------------~i--- 54 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGH-EVTVYCRSPYPKQKETEYN----------------------GV--- 54 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCC-CEEEEEccCCCCCcccccC----------------------Cc---
Confidence 69999664 677778888777888999999996 9999986422111000000 11
Q ss_pred ceeeccCCcccccc-cccCchHhHHhhc-ccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcc
Q 003992 390 FKISFYPGKFSKER-RSIIPAGDTSQFI-PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 466 (781)
Q Consensus 390 ~~i~~yP~~~~~~~-~sil~v~~L~k~I-~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~ 466 (781)
.+...|....... ........+...+ .+.++|+||...|....+ ..++++.+ |++.++|....... ...
T Consensus 55 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~v~~~h~~~~~~~---~~~ 126 (363)
T cd04955 55 -RLIHIPAPEIGGLGTIIYDILAILHALFVKRDIDHVHALGPAIAPF----LPLLRLKGKKVVVNMDGLEWKRA---KWG 126 (363)
T ss_pred -eEEEcCCCCccchhhhHHHHHHHHHHHhccCCeEEEEecCccHHHH----HHHHHhcCCCEEEEccCcceeec---ccc
Confidence 1111111000000 0001111222222 355677777766654222 22344446 88888886532111 111
Q ss_pred hhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-----CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 467 ALQAFFVKHINNWVTRAYCDKVLRLSAATQDL-----PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 467 ~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
.....+.+..+++..+ .+|.|+++|+.+++. .....+++||+|...+.+ ........+..+ .+.++|+||+
T Consensus 127 ~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~~~--~~~~~~~~~~~~-~~~i~~~G~~ 202 (363)
T cd04955 127 RPAKRYLKFGEKLAVK-FADRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVSSE--EDEILKKYGLEP-GRYYLLVGRI 202 (363)
T ss_pred cchhHHHHHHHHHHHh-hccEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhcch--hhhhHHhcCCCC-CcEEEEEecc
Confidence 1112334445555555 699999999977653 223488999999766543 112233344433 4568899999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHH-hcCCc--EEEcCCCCCHH--HHHhcccEEEEccCC-C
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK-RLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS-D 615 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~-~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~-E 615 (781)
.+.||++.+++|+.++.. +++|+++|+|+....+.+.++ ..++. |.|+|++++.+ .+|..||++++||.. |
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e 279 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVG 279 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCC
Confidence 999999999999998854 799999999977666655554 44443 99999998876 899999999999999 9
Q ss_pred CChHHHHHHHHhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHH
Q 003992 616 VLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRF 689 (781)
Q Consensus 616 gfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerl 689 (781)
+||++++||||||+|||+|++|+..++... ++..+.+.+.++++|.+++++++.+.++ ...+.|||+.+++++
T Consensus 280 ~~~~~~~EAma~G~PvI~s~~~~~~e~~~~-~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 358 (363)
T cd04955 280 GTNPSLLEAMAYGCPVLASDNPFNREVLGD-KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQY 358 (363)
T ss_pred CCChHHHHHHHcCCCEEEecCCccceeecC-CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999998776654 4444333333999999999998776666 223569999999999
Q ss_pred HHHhh
Q 003992 690 IEYSE 694 (781)
Q Consensus 690 l~~Ye 694 (781)
+++|+
T Consensus 359 ~~~y~ 363 (363)
T cd04955 359 EELYK 363 (363)
T ss_pred HHHhC
Confidence 99985
No 23
>PRK14099 glycogen synthase; Provisional
Probab=99.98 E-value=2.9e-31 Score=304.26 Aligned_cols=278 Identities=13% Similarity=0.125 Sum_probs=196.4
Q ss_pred ccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCc-HHHH-H--HhhcchhHHHH-------HH--HHHHHHHH
Q 003992 417 PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNY-LEYI-K--REKNGALQAFF-------VK--HINNWVTR 482 (781)
Q Consensus 417 ~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y-~~y~-~--~~~~~~~~~~l-------~k--~l~r~l~r 482 (781)
.+++|||||+|+ ++.+++..-+.+....+ |.|.++|+.. .... . ....+.....+ +. .+.++..+
T Consensus 130 ~~~~pDIiH~Hd-w~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~ 208 (485)
T PRK14099 130 PGFVPDIVHAHD-WQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ 208 (485)
T ss_pred cCCCCCEEEECC-cHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH
Confidence 468999999998 33344330011111234 8999999742 1100 0 00000000000 00 11233333
Q ss_pred hcCCEEEEcChhhhh-c----------------CCCcEEeeCCCCCCCCCCCcc-------------------hhhHhhh
Q 003992 483 AYCDKVLRLSAATQD-L----------------PKSVICNVHGVNPKFLQIGEK-------------------VATDREQ 526 (781)
Q Consensus 483 ~~aD~VI~vS~~~k~-l----------------~~kivvi~nGVD~~~f~p~~~-------------------~~~r~~~ 526 (781)
+||.|+++|+..++ + ..++.+|+||||++.|.|... ...++++
T Consensus 209 -~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~ 287 (485)
T PRK14099 209 -LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARF 287 (485)
T ss_pred -hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHc
Confidence 69999999996543 2 235789999999887766421 2345677
Q ss_pred CcCC--CCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcE-EEcCCCCCHHHH
Q 003992 527 GQQA--FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNL-NFQKGRDHADDS 601 (781)
Q Consensus 527 Gi~~--~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V-~FlG~v~~~e~l 601 (781)
|++. +.+++++|||+.++||++.|++|+..+.+. +++|+|+|+|+. .+.+++++++++..+ .|+|+.++...+
T Consensus 288 gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~ 365 (485)
T PRK14099 288 GLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHL 365 (485)
T ss_pred CCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHH
Confidence 8763 467888999999999999999999998753 799999999974 577888887766554 789985554555
Q ss_pred H-hcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceee-cC---------Ccccc--CCCHHHHHHHHHH---HH
Q 003992 602 L-HGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SF---------PNCLT--YKTSEDFVARVKE---AL 665 (781)
Q Consensus 602 y-~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~---------~ngv~--~~D~eeLa~aI~~---LL 665 (781)
| +.||+||+||.+|+||++++||||||+|+|++++||....+ +. .+|+. ..|+++|+++|.+ ++
T Consensus 366 ~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 366 IQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALF 445 (485)
T ss_pred HHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHh
Confidence 5 67999999999999999999999999988889998875533 22 35644 4899999999997 66
Q ss_pred hCCCCCCCh---HHHHcCCHHHHHHHHHHHhhhccccc
Q 003992 666 ANDPQPLTP---EQRYNLSWEAATQRFIEYSELNRILN 700 (781)
Q Consensus 666 ~d~~~r~~m---~~~~~fSWe~iaerll~~Ye~~~vl~ 700 (781)
+|++.+.+| ....+|||+.++++++++|+ ++++
T Consensus 446 ~d~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~--~l~~ 481 (485)
T PRK14099 446 ADPVAWRRLQRNGMTTDVSWRNPAQHYAALYR--SLVA 481 (485)
T ss_pred cCHHHHHHHHHHhhhhcCChHHHHHHHHHHHH--HHHh
Confidence 777777666 34578999999999999999 7663
No 24
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.98 E-value=1.5e-30 Score=312.78 Aligned_cols=390 Identities=15% Similarity=0.123 Sum_probs=249.7
Q ss_pred ccccCCCCCCCCCCCEEEEEeCccCC-----CcC------cccccHHHHHHHHHHcC-CCEEEEEeccCCCCCCcccccc
Q 003992 296 FWTDFGKDDLSDKKRNVAIVTTASLP-----WMT------GTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYPN 363 (781)
Q Consensus 296 ~~~~~~~~~~~~~~~rIaI~TtaflP-----~~~------G~av~~l~rA~~Lak~G-~~~VtlVvP~l~~~dq~~v~p~ 363 (781)
.|.+..+ .++|.|++|+..=+| .++ |..++....|..|++.| .++|.+++-.....+....|+.
T Consensus 160 ~~~~~~~----~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~ 235 (1050)
T TIGR02468 160 TWSDQQK----EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGE 235 (1050)
T ss_pred cchhhcc----cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCC
Confidence 4755443 578999999976554 223 34556677899999986 3499999865432111111222
Q ss_pred -ccccCCchhhHHHHHHHHHhhCCcccceeecc---CC-cccccccccCch-----HhHHhhccc--------------C
Q 003992 364 -VTFCSPEEQENYMRNWLEERVGFKADFKISFY---PG-KFSKERRSIIPA-----GDTSQFIPS--------------K 419 (781)
Q Consensus 364 -i~f~~p~~qe~yir~~l~~rig~~~~~~i~~y---P~-~~~~~~~sil~v-----~~L~k~I~~--------------~ 419 (781)
.....|...+.+ ....+..++.++... |. +|-. ...+++. ..+...+.+ .
T Consensus 236 p~e~~~~~~~~~~-----~~~~~~~~g~rIvRip~GP~~~~l~-Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~ 309 (1050)
T TIGR02468 236 PTEMLTPRSSEND-----GDEMGESSGAYIIRIPFGPRDKYIP-KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPV 309 (1050)
T ss_pred ccccccccccccc-----cccccCCCCeEEEEeccCCCCCCcC-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC
Confidence 111111000000 001112223333222 22 1111 1111111 112222211 1
Q ss_pred CCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHH-hhcch---------hHHHHHHHHHHHHHHhcCCEE
Q 003992 420 DADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR-EKNGA---------LQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 420 kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~-~~~~~---------~~~~l~k~l~r~l~r~~aD~V 488 (781)
.|||||.|. +..++.+ ..+++.++ |+|.++|+.-...... ...+. .........+.+... .||.|
T Consensus 310 ~pDvIHaHy-w~sG~aa--~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~-~Ad~V 385 (1050)
T TIGR02468 310 WPYVIHGHY-ADAGDSA--ALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLD-ASEIV 385 (1050)
T ss_pred CCCEEEECc-chHHHHH--HHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHH-hcCEE
Confidence 499999995 3334433 66777778 9999999742211110 01110 000011123455554 79999
Q ss_pred EEcChhhhh-----c-------------------------CCCcEEeeCCCCCCCCCCCcchh-----------------
Q 003992 489 LRLSAATQD-----L-------------------------PKSVICNVHGVNPKFLQIGEKVA----------------- 521 (781)
Q Consensus 489 I~vS~~~k~-----l-------------------------~~kivvi~nGVD~~~f~p~~~~~----------------- 521 (781)
|+.|...++ + ..++.|||||||+..|.|.....
T Consensus 386 IasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~ 465 (1050)
T TIGR02468 386 ITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPP 465 (1050)
T ss_pred EEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccch
Confidence 999985543 1 12678999999988776632111
Q ss_pred ---hHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhcc--CCCcEEEEEeCCCCH-----------HHHHHHHHhc
Q 003992 522 ---TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND--LDGFKLDVFGNGEDA-----------YEVQSAAKRL 585 (781)
Q Consensus 522 ---~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~--~p~i~LvIVG~Gp~~-----------~~L~~~a~~l 585 (781)
...++...++.++|+|+||+.++||++.||+|+..+.+. .+++. +|+|+|++. ..++.++.++
T Consensus 466 ~~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 466 IWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred hhHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 011233456778999999999999999999999998643 34665 467887643 4567788888
Q ss_pred CCc--EEEcCCCCCHH--HHHhcc----cEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceee-cCCccc--cCCCH
Q 003992 586 DLN--LNFQKGRDHAD--DSLHGY----KVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCL--TYKTS 654 (781)
Q Consensus 586 gL~--V~FlG~v~~~e--~ly~~A----DVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~~ngv--~~~D~ 654 (781)
++. |.|+|+++..+ .+|+.| |+||+||.+|+||++++||||||+|||+|++||...++ .+.+|+ .+.|+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~ 624 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQ 624 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCH
Confidence 887 99999987655 889887 69999999999999999999999999999999876544 456664 44899
Q ss_pred HHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHHHHhhhccccccC
Q 003992 655 EDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFIEYSELNRILNNN 702 (781)
Q Consensus 655 eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll~~Ye~~~vl~~~ 702 (781)
++|+++|.++++|++.+.+| +..++|+|+.+++++++.|. .+..+.
T Consensus 625 eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~--~~~~~~ 675 (1050)
T TIGR02468 625 QAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIA--SCRPRH 675 (1050)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHhccC
Confidence 99999999999999888877 34568999999999999998 666443
No 25
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.98 E-value=1.4e-30 Score=274.37 Aligned_cols=352 Identities=19% Similarity=0.147 Sum_probs=249.9
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|++..++|..+|........+.+|.+.|+ +|+++++............... . ...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~-~v~i~~~~~~~~~~~~~~~~~~----~-------------~~~---- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGH-EVTVLTPGDGGLPDEEEVGGIV----V-------------VRP---- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCc-eEEEEecCCCCCCceeeecCcc----e-------------ecC----
Confidence 69999999999877877777778999999885 9999987533211100000000 0 000
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
..................+.+.+...+||+||++.+....... ...+..+ |++..+|+.+....... ....
T Consensus 59 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~~~--~~~~ 130 (374)
T cd03801 59 ---PPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA---LAARLLGIPLVLTVHGLEFGRPGNE--LGLL 130 (374)
T ss_pred ---CcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH---HHHHhcCCcEEEEeccchhhccccc--hhHH
Confidence 0000000000011122346677888899999999876654332 3344455 99999998654332111 0111
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChhhhhc-----C---CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAATQDL-----P---KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~---~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
........+...+ .+|.++++|+.+++. . .++.+++||+++..+.+.. ...+.........+.++|+|++
T Consensus 131 ~~~~~~~~~~~~~-~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~ 208 (374)
T cd03801 131 LKLARALERRALR-RADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVGRL 208 (374)
T ss_pred HHHHHHHHHHHHH-hCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEecch
Confidence 2223344444444 699999999977652 1 2578889999987765432 2222233334556789999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCC
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVL 617 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~Egf 617 (781)
...||++.+++++..+.+..++++|+++|+|+....+++.+++.+.. |.|+|+++..+ .+|+.||++++||..|++
T Consensus 209 ~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~ 288 (374)
T cd03801 209 VPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGF 288 (374)
T ss_pred hhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccc
Confidence 99999999999999998888899999999999988888888776665 99999996554 999999999999999999
Q ss_pred hHHHHHHHHhCCcEEEeCCCCcceeec-CCccccC--CCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHH
Q 003992 618 CTATAEALAMGKFVICADHPSNEFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQR 688 (781)
Q Consensus 618 GlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~~--~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaer 688 (781)
|++++|||+||+|||+++.++...+.. +.+|+.+ .|+++++++|.+++++++.+.+| ...+.|+|+.++++
T Consensus 289 ~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (374)
T cd03801 289 GLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAAR 368 (374)
T ss_pred cchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999988765544 5555444 67899999999999998877666 24678999999999
Q ss_pred HHHHhh
Q 003992 689 FIEYSE 694 (781)
Q Consensus 689 ll~~Ye 694 (781)
+++.|+
T Consensus 369 ~~~~~~ 374 (374)
T cd03801 369 TEEVYY 374 (374)
T ss_pred HHHhhC
Confidence 999874
No 26
>PRK14098 glycogen synthase; Provisional
Probab=99.98 E-value=5.8e-31 Score=302.08 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=196.5
Q ss_pred CCCcEEEECCCchhHHHHHHHHHHhhc-------C-CEEEEEECCcHHHHH---Hh-h-c-chhHHHHH-----HHHHHH
Q 003992 419 KDADIAILEEPEHLNWYHHGKRWTDKF-------N-HVVGVVHTNYLEYIK---RE-K-N-GALQAFFV-----KHINNW 479 (781)
Q Consensus 419 ~kPDVIhl~~P~~l~~~~~g~~~akk~-------~-pvV~ivHt~y~~y~~---~~-~-~-~~~~~~l~-----k~l~r~ 479 (781)
++|||||+|+ ++.++.+ ..+.+++ + |+|.++|+.+..... .. . . ......+. ..+.+.
T Consensus 140 ~~pDiiH~hd-w~t~l~~--~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~ 216 (489)
T PRK14098 140 WKPDIIHCHD-WYAGLVP--LLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYT 216 (489)
T ss_pred CCCCEEEecC-cHHHHHH--HHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHH
Confidence 6899999997 3334433 2222221 4 999999985421100 00 0 0 00000000 001122
Q ss_pred HHHhcCCEEEEcChhhhh-c-----------------CCCcEEeeCCCCCCCCCCCcc-------------------hhh
Q 003992 480 VTRAYCDKVLRLSAATQD-L-----------------PKSVICNVHGVNPKFLQIGEK-------------------VAT 522 (781)
Q Consensus 480 l~r~~aD~VI~vS~~~k~-l-----------------~~kivvi~nGVD~~~f~p~~~-------------------~~~ 522 (781)
..+ +||.|+++|+..++ + ..++.+|+||||.+.|.|... ...
T Consensus 217 ~i~-~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l 295 (489)
T PRK14098 217 GVE-HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKAL 295 (489)
T ss_pred HHH-hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHH
Confidence 223 69999999995543 2 135788999999887766431 223
Q ss_pred HhhhCcC--CCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEEEcCCCCCH
Q 003992 523 DREQGQQ--AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHA 598 (781)
Q Consensus 523 r~~~Gi~--~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~FlG~v~~~ 598 (781)
++.+|++ ++.++++|+||+.++||++.|++|+.++.+ ++++|+|+|+|+. .+.+++++++++.+|.|+|..++.
T Consensus 296 ~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~ 373 (489)
T PRK14098 296 LEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDA 373 (489)
T ss_pred HHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHH
Confidence 4566765 356799999999999999999999999875 3799999999985 478888888876569999998876
Q ss_pred H--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-----CCcccc--CCCHHHHHHHHHHHH---h
Q 003992 599 D--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS-----FPNCLT--YKTSEDFVARVKEAL---A 666 (781)
Q Consensus 599 e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-----~~ngv~--~~D~eeLa~aI~~LL---~ 666 (781)
. .+|++||+|++||.+|+||++.+|||+||+|+|++++||....+. +.+|+. ..|+++|+++|.+++ .
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~ 453 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYH 453 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHc
Confidence 5 899999999999999999999999999999999999998854332 345644 489999999999876 4
Q ss_pred CCCCCCCh---HHHHcCCHHHHHHHHHHHhhhcccc
Q 003992 667 NDPQPLTP---EQRYNLSWEAATQRFIEYSELNRIL 699 (781)
Q Consensus 667 d~~~r~~m---~~~~~fSWe~iaerll~~Ye~~~vl 699 (781)
|++.+.++ .....|||+.++++++++|+ +++
T Consensus 454 ~~~~~~~~~~~~~~~~fsw~~~a~~y~~lY~--~~~ 487 (489)
T PRK14098 454 DEERWEELVLEAMERDFSWKNSAEEYAQLYR--ELL 487 (489)
T ss_pred CHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHh
Confidence 55544444 23468999999999999999 654
No 27
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.98 E-value=5.3e-30 Score=276.20 Aligned_cols=339 Identities=13% Similarity=0.081 Sum_probs=238.0
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
+|+++++.+ ..+|........+.+|.+.|+ +|++++..-.. ....... .... .
T Consensus 1 ~il~~~~~~--~~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~--~~~~~~~--------------------~~~~--~ 53 (360)
T cd04951 1 KILYVITGL--GLGGAEKQVVDLADQFVAKGH-QVAIISLTGES--EVKPPID--------------------ATII--L 53 (360)
T ss_pred CeEEEecCC--CCCCHHHHHHHHHHhcccCCc-eEEEEEEeCCC--Cccchhh--------------------ccce--E
Confidence 488887765 467877777778999999985 99998742100 0000000 0000 0
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
.+.+... ....+.....+.+++++.+|||||++.+... .+.....+. ... +++.+.|+....
T Consensus 54 ~~~~~~~----~~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~-~~~~l~~~~-~~~~~~v~~~h~~~~~----------- 116 (360)
T cd04951 54 NLNMSKN----PLSFLLALWKLRKILRQFKPDVVHAHMFHAN-IFARLLRLF-LPSPPLICTAHSKNEG----------- 116 (360)
T ss_pred Eeccccc----chhhHHHHHHHHHHHHhcCCCEEEEcccchH-HHHHHHHhh-CCCCcEEEEeeccCch-----------
Confidence 0000000 0001112345677888899999999876532 222011111 223 788888865321
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCCCCc--chhhHhhhCcCCCCcEEEEEe
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQIGE--KVATDREQGQQAFSKGAYFLG 539 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~p~~--~~~~r~~~Gi~~~~~~ILfVG 539 (781)
......+.++..+ +++.++++|....+. ..++.+++||+|...+.+.. ....+..+++.++.++++|+|
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 195 (360)
T cd04951 117 GRLRMLAYRLTDF-LSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVG 195 (360)
T ss_pred hHHHHHHHHHHhh-ccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEe
Confidence 1111222233333 578888889865542 23678899999976664432 223455667777788999999
Q ss_pred eccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCC
Q 003992 540 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVL 617 (781)
Q Consensus 540 RL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~Egf 617 (781)
++.+.||++.+++++.++.++.|+++|+|+|+|+..+++++.++++++. |.|+|+.++...+|+.||+|++||..|+|
T Consensus 196 ~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~ 275 (360)
T cd04951 196 RLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGF 275 (360)
T ss_pred eCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCC
Confidence 9999999999999999998888999999999999999999999888765 99999998888999999999999999999
Q ss_pred hHHHHHHHHhCCcEEEeCCCCcceeecC-CccccCCCHHHHHHHHHHHHhCCCC-CCCh-----HHHHcCCHHHHHHHHH
Q 003992 618 CTATAEALAMGKFVICADHPSNEFFRSF-PNCLTYKTSEDFVARVKEALANDPQ-PLTP-----EQRYNLSWEAATQRFI 690 (781)
Q Consensus 618 GlviLEAMA~G~PVVaSd~gg~g~L~~~-~ngv~~~D~eeLa~aI~~LL~d~~~-r~~m-----~~~~~fSWe~iaerll 690 (781)
|++++||||||+|||+++.|+...+... ...+..+|+++++++|.+++++++. +..+ ...+.|||+.++++++
T Consensus 276 ~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 355 (360)
T cd04951 276 GLVVAEAMACELPVVATDAGGVREVVGDSGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWL 355 (360)
T ss_pred ChHHHHHHHcCCCEEEecCCChhhEecCCceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999988665543 2235559999999999999955433 3333 3457899999999999
Q ss_pred HHhh
Q 003992 691 EYSE 694 (781)
Q Consensus 691 ~~Ye 694 (781)
++|+
T Consensus 356 ~~y~ 359 (360)
T cd04951 356 TLYT 359 (360)
T ss_pred HHhh
Confidence 9996
No 28
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=1.5e-30 Score=281.14 Aligned_cols=325 Identities=18% Similarity=0.177 Sum_probs=226.3
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++++..+ ..||+.......+..|.+.|+ +|+++++.-. .. .+. .. + ...++.
T Consensus 1 kIl~~~~~~--~~GG~~~~~~~l~~~L~~~~~-~v~~i~~~~~--~~--~~~----------~~-----~-~~~~~~--- 54 (358)
T cd03812 1 KILHIVGTM--NRGGIETFIMNYYRNLDRSKI-QFDFLVTSKE--EG--DYD----------DE-----I-EKLGGK--- 54 (358)
T ss_pred CEEEEeCCC--CCccHHHHHHHHHHhcCccce-EEEEEEeCCC--Cc--chH----------HH-----H-HHcCCe---
Confidence 689998877 567877766677888988875 9999986311 00 000 00 0 111221
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CE-EEEEECCcHHHHHHhhcchh
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HV-VGVVHTNYLEYIKREKNGAL 468 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pv-V~ivHt~y~~y~~~~~~~~~ 468 (781)
+...+..... .......+.+++++.+|||||++.+.. .++. ..+.+..+ +. +...|..+.......
T Consensus 55 -~~~~~~~~~~---~~~~~~~~~~~~~~~~~Dvv~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~----- 122 (358)
T cd03812 55 -IYYIPARKKN---PLKYFKKLYKLIKKNKYDIVHVHGSSA-SGFI--LLAAKKAGVKVRIAHSHNTSDSHDKKK----- 122 (358)
T ss_pred -EEEecCCCcc---HHHHHHHHHHHHhcCCCCEEEEeCcch-hHHH--HHHHhhCCCCeEEEEeccccccccccc-----
Confidence 1111111100 011123466677889999999998763 3333 23444444 44 555665442211000
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEcChhhhhc------CCCcEEeeCCCCCCCCCCCcc-hhhHhhhCcCCCCcEEEEEeec
Q 003992 469 QAFFVKHINNWVTRAYCDKVLRLSAATQDL------PKSVICNVHGVNPKFLQIGEK-VATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 469 ~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l------~~kivvi~nGVD~~~f~p~~~-~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
.......+.+.+.+ .+|.++++|....+. ..++.+++||||...+.+... ...+...+...+.+.++|+||+
T Consensus 123 ~~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~ 201 (358)
T cd03812 123 KILKYKVLRKLINR-LATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRF 201 (358)
T ss_pred hhhHHHHHHHHHHh-cCCEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEecc
Confidence 00001233344444 699999999976552 246789999999765544321 1123345556678899999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChH
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCT 619 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGl 619 (781)
.++||++.+++++..+.++.++++++|+|+|+..+.+++.++++++. |.|+|+.++..++|+.||++|+||..|++|+
T Consensus 202 ~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~ 281 (358)
T cd03812 202 SEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPL 281 (358)
T ss_pred ccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCH
Confidence 99999999999999999888999999999999999999999888776 9999997777799999999999999999999
Q ss_pred HHHHHHHhCCcEEEeCCCCcceeecC-CccccC-CCHHHHHHHHHHHHhCCCCCCCh
Q 003992 620 ATAEALAMGKFVICADHPSNEFFRSF-PNCLTY-KTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 620 viLEAMA~G~PVVaSd~gg~g~L~~~-~ngv~~-~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
+++||||||+|||+|+.|+...+... .+++.. +++++++++|.++++|+..+..+
T Consensus 282 ~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 282 VLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred HHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhh
Confidence 99999999999999999988665544 233333 66899999999999999988777
No 29
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=9.3e-30 Score=267.87 Aligned_cols=329 Identities=18% Similarity=0.131 Sum_probs=236.2
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|++..+.| .+|++......+.+|.+.|+ +|+++++.-.. ...+. ... .+
T Consensus 1 kI~i~~~~~~~-~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~---~~~~~-----~~~------------------~~ 52 (348)
T cd03820 1 KILFVIPSLGN-AGGAERVLSNLANALAEKGH-EVTIISLDKGE---PPFYE-----LDP------------------KI 52 (348)
T ss_pred CeEEEeccccC-CCChHHHHHHHHHHHHhCCC-eEEEEecCCCC---CCccc-----cCC------------------cc
Confidence 69999998887 78887777778999999885 99999764221 00000 000 00
Q ss_pred eeeccCCcc-cccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchh
Q 003992 391 KISFYPGKF-SKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL 468 (781)
Q Consensus 391 ~i~~yP~~~-~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~ 468 (781)
.+...+... ............+.+++++.+||+||++.+....+.. ...... |++...|..+......
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~------ 122 (348)
T cd03820 53 KVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLA----SLGLKIVKLIVSEHNSPDAYKKR------ 122 (348)
T ss_pred ceeecccccccchhccccchHHHHHhhcccCCCEEEEcCchHHHHHH----HHhhccccEEEecCCCccchhhh------
Confidence 000000000 0011122234567888888999999999876222222 222223 7888888765433211
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEcChhhhh-----cCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccC
Q 003992 469 QAFFVKHINNWVTRAYCDKVLRLSAATQD-----LPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVW 543 (781)
Q Consensus 469 ~~~l~k~l~r~l~r~~aD~VI~vS~~~k~-----l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~ 543 (781)
.......+...+ .+|.++++|+..+. ...++.+++||++...+... .....+.++|+|++.+
T Consensus 123 --~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~~ 189 (348)
T cd03820 123 --LRRLLLRRLLYR-RADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLVP 189 (348)
T ss_pred --hHHHHHHHHHHh-cCCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeecc
Confidence 111113444444 69999999997742 22467889999987665432 1224678999999999
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHH
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTAT 621 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlvi 621 (781)
.||++.+++++..+.+..++++|+|+|+|++...+++.+++.++. |.|+|..++...+|+.||++++||.+|+||+++
T Consensus 190 ~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~ 269 (348)
T cd03820 190 QKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVL 269 (348)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHH
Confidence 999999999999998888999999999999999998888888876 999999667779999999999999999999999
Q ss_pred HHHHHhCCcEEEeCCCCc-ceeec-CCcccc--CCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHH
Q 003992 622 AEALAMGKFVICADHPSN-EFFRS-FPNCLT--YKTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFI 690 (781)
Q Consensus 622 LEAMA~G~PVVaSd~gg~-g~L~~-~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll 690 (781)
+|||+||+|||+++.++. ..+.. +.+|+. ..|+++++++|.++++|++.+..| ...+.|+|+.+++++.
T Consensus 270 ~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 270 LEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 999999999999987643 33333 335543 378899999999999999887777 3567899999998875
No 30
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=3.6e-30 Score=275.16 Aligned_cols=357 Identities=15% Similarity=0.111 Sum_probs=243.7
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|+|..++|..+|.+......+.+|++.|+ +|+++++...........+ .... ....+
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~-~v~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~ 60 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGH-EVTVITGSPNYPSGKIYKG-YKRE------------------EVDGV 60 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCc-eEEEEecCCCccccccccc-ceEE------------------ecCCe
Confidence 69999999999889999888889999999986 9999986432211110000 0000 00001
Q ss_pred eeeccCCc---ccccccccC----chHhHHhhc--ccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHH
Q 003992 391 KISFYPGK---FSKERRSII----PAGDTSQFI--PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYI 460 (781)
Q Consensus 391 ~i~~yP~~---~~~~~~sil----~v~~L~k~I--~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~ 460 (781)
.+..++.. .......+. ........+ ...+||+||++.+.....+. +...++..+ |++..+|+.+....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~ 139 (394)
T cd03794 61 RVHRVPLPPYKKNGLLKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALA-ALLLARLKGAPFVLEVRDLWPESA 139 (394)
T ss_pred EEEEEecCCCCccchHHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHH-HHHHHHhcCCCEEEEehhhcchhH
Confidence 11111100 000000000 011122222 47899999999855443333 234445446 99999998765443
Q ss_pred HHhhcc---hhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcC-------CCcEEeeCCCCCCCCCCCcchhhHhhhCcCC
Q 003992 461 KREKNG---ALQAFFVKHINNWVTRAYCDKVLRLSAATQDLP-------KSVICNVHGVNPKFLQIGEKVATDREQGQQA 530 (781)
Q Consensus 461 ~~~~~~---~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~-------~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~ 530 (781)
...... .....+...+.++..+ .+|.++++|+..++.. .++.+++||+++..+.+......+.......
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (394)
T cd03794 140 VALGLLKNGSLLYRLLRKLERLIYR-RADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLD 218 (394)
T ss_pred HHccCccccchHHHHHHHHHHHHHh-cCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCC
Confidence 322111 1111234445555555 6999999999776532 3567889999976665433221122334445
Q ss_pred CCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc-EEEcCCCCCHH--HHHhcccE
Q 003992 531 FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHAD--DSLHGYKV 607 (781)
Q Consensus 531 ~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~-V~FlG~v~~~e--~ly~~ADV 607 (781)
+...++|+|++.+.||++.+++++.++.+. ++++|+|+|+|+..+.+++.+...++. |.|+|+++..+ ++|+.||+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di 297 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV 297 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe
Confidence 677899999999999999999999999877 899999999999998888877766666 99999888666 89999999
Q ss_pred EEEccCCCCC-----hHHHHHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCCCCCCh-----
Q 003992 608 FINPSISDVL-----CTATAEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDPQPLTP----- 674 (781)
Q Consensus 608 fVlPS~~Egf-----GlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m----- 674 (781)
+++||..|++ |++++|||+||+|||+++.++...+.. +.+|+ ..+|+++++++|.++++|++.+.+|
T Consensus 298 ~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 377 (394)
T cd03794 298 GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGR 377 (394)
T ss_pred eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999998876 888999999999999999998765443 34443 3379999999999999998887777
Q ss_pred H-HHHcCCHHHHHHHHH
Q 003992 675 E-QRYNLSWEAATQRFI 690 (781)
Q Consensus 675 ~-~~~~fSWe~iaerll 690 (781)
+ ..+.|||+.++++++
T Consensus 378 ~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 378 RYVEEKFSREKLAERLL 394 (394)
T ss_pred HHHHHhhcHHHHHHhcC
Confidence 1 234899999998863
No 31
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=6.5e-30 Score=274.18 Aligned_cols=337 Identities=18% Similarity=0.121 Sum_probs=233.1
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|++. |+|..+|++......+..|++.|+ +|++++..-..... ..... .....
T Consensus 1 kI~~v~~-~~~~~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~~---------~~~~~--------------~~~~~ 55 (366)
T cd03822 1 RIALVSP-YPPRKCGIATFTTDLVNALSARGP-DVLVVSVAALYPSL---------LYGGE--------------QEVVR 55 (366)
T ss_pred CeEEecC-CCCCCCcHHHHHHHHHHHhhhcCC-eEEEEEeecccCcc---------cCCCc--------------cccee
Confidence 6999965 678889998888888999999996 88887632111000 00000 00000
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchh--HHHH-HHHHHHhhcC-CEEEEEECCcHHHHHHhhcc
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHL--NWYH-HGKRWTDKFN-HVVGVVHTNYLEYIKREKNG 466 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l--~~~~-~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~ 466 (781)
.... ........+.+.++..+||+||++....+ .... ......+..+ |++.++|.......
T Consensus 56 ~~~~---------~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------ 120 (366)
T cd03822 56 VIVL---------DNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP------ 120 (366)
T ss_pred eeec---------CCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc------
Confidence 0000 01112234667788899999999762211 1111 0112223355 99999998611110
Q ss_pred hhHHHHHHHHHHHHHHhcCCEEEEcC-hhhhhc-----CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEee
Q 003992 467 ALQAFFVKHINNWVTRAYCDKVLRLS-AATQDL-----PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 540 (781)
Q Consensus 467 ~~~~~l~k~l~r~l~r~~aD~VI~vS-~~~k~l-----~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGR 540 (781)
......+.+.+.+ .+|.|+++| +..+++ ..++.+++||++...+...... .......+.+.++|+|+
T Consensus 121 ---~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~ 193 (366)
T cd03822 121 ---RPGDRALLRLLLR-RADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL---KALGGLDGRPVLLTFGL 193 (366)
T ss_pred ---chhhhHHHHHHHh-cCCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh---HhhcCCCCCeEEEEEee
Confidence 1112223333444 699999996 444442 2478889999997665443211 22333446788999999
Q ss_pred ccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHH-----HHHhcCCc--EEEcCC-CCCHH--HHHhcccEEEE
Q 003992 541 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQS-----AAKRLDLN--LNFQKG-RDHAD--DSLHGYKVFIN 610 (781)
Q Consensus 541 L~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~-----~a~~lgL~--V~FlG~-v~~~e--~ly~~ADVfVl 610 (781)
+.+.||++.+++++..+.++.++++|+|+|+|........ +++++++. |.|+|. ++..+ .+|+.||++++
T Consensus 194 ~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ 273 (366)
T cd03822 194 LRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVL 273 (366)
T ss_pred ccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEe
Confidence 9999999999999999998889999999999876533322 25667765 999987 77655 99999999999
Q ss_pred ccCCC--CChHHHHHHHHhCCcEEEeCCCCcceeecCCcccc--CCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCC
Q 003992 611 PSISD--VLCTATAEALAMGKFVICADHPSNEFFRSFPNCLT--YKTSEDFVARVKEALANDPQPLTP-----EQRYNLS 681 (781)
Q Consensus 611 PS~~E--gfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fS 681 (781)
||..| ++|++++||||||+|||+++.|+...+....+|+. .+|+++++++|..+++|+..+.+| .....||
T Consensus 274 ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s 353 (366)
T cd03822 274 PYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMS 353 (366)
T ss_pred cccccccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCC
Confidence 99999 99999999999999999999998666666656543 378999999999999998777777 3345699
Q ss_pred HHHHHHHHHHHhh
Q 003992 682 WEAATQRFIEYSE 694 (781)
Q Consensus 682 We~iaerll~~Ye 694 (781)
|+.+++++.++|+
T Consensus 354 ~~~~~~~~~~~~~ 366 (366)
T cd03822 354 WERVAERYLRLLA 366 (366)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999884
No 32
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.97 E-value=6e-31 Score=279.26 Aligned_cols=348 Identities=14% Similarity=0.188 Sum_probs=247.6
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
.+||++++.|+|.+||+..-.++...-|.+.|| +|.+++--+ ++... +++.+ ..
T Consensus 1 ~~i~mVsdff~P~~ggveshiy~lSq~li~lgh-kVvvithay--g~r~g----irylt-------------------~g 54 (426)
T KOG1111|consen 1 SRILMVSDFFYPSTGGVESHIYALSQCLIRLGH-KVVVITHAY--GNRVG----IRYLT-------------------NG 54 (426)
T ss_pred CcceeeCcccccCCCChhhhHHHhhcchhhcCC-eEEEEeccc--cCccc----eeeec-------------------CC
Confidence 479999999999999999888888999999996 888775321 11110 11110 01
Q ss_pred ceeeccCCcc------cccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHH
Q 003992 390 FKISFYPGKF------SKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR 462 (781)
Q Consensus 390 ~~i~~yP~~~------~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~ 462 (781)
+++.+.|... .....+-+|+ +...+.+++..|||-|+++..- .+-++..++-.+ ..|.+-|+.|- +.
T Consensus 55 lkVyylp~~v~~n~tT~ptv~~~~Pl--lr~i~lrE~I~ivhghs~fS~l-ahe~l~hartMGlktVfTdHSlfG-fa-- 128 (426)
T KOG1111|consen 55 LKVYYLPAVVGYNQTTFPTVFSDFPL--LRPILLRERIEIVHGHSPFSYL-AHEALMHARTMGLKTVFTDHSLFG-FA-- 128 (426)
T ss_pred ceEEEEeeeeeecccchhhhhccCcc--cchhhhhhceEEEecCChHHHH-HHHHHHHHHhcCceEEEecccccc-cc--
Confidence 1111111110 0001112332 3344455688899988875432 223566777778 77888887552 11
Q ss_pred hhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhh--------cCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcE
Q 003992 463 EKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQD--------LPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKG 534 (781)
Q Consensus 463 ~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~--------l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ 534 (781)
.........+-.+.. ...|.+||+|...++ -+.++.+|||.+++..|.|.... .. ..+...
T Consensus 129 ----d~~si~~n~ll~~sL-~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~---~~---S~~i~~ 197 (426)
T KOG1111|consen 129 ----DIGSILTNKLLPLSL-ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD---KP---SADIIT 197 (426)
T ss_pred ----chhhhhhcceeeeee-cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc---cC---CCCeeE
Confidence 111111111111111 148999999998877 13578899999999888774322 11 113367
Q ss_pred EEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEE
Q 003992 535 AYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFIN 610 (781)
Q Consensus 535 ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVl 610 (781)
++.++||.++||+|.|++++.++++++|+++++|+|+||.+..+++..+++.++ |.++|.+++.+ +.|...|+|++
T Consensus 198 ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFln 277 (426)
T KOG1111|consen 198 IVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLN 277 (426)
T ss_pred EEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEec
Confidence 899999999999999999999999999999999999999999999999988877 99999999988 99999999999
Q ss_pred ccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecCCcc-ccCCCHHHHHHHHHHHHhCCCCC-CCh--HHHHcCCHHHHH
Q 003992 611 PSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNC-LTYKTSEDFVARVKEALANDPQP-LTP--EQRYNLSWEAAT 686 (781)
Q Consensus 611 PS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ng-v~~~D~eeLa~aI~~LL~d~~~r-~~m--~~~~~fSWe~ia 686 (781)
||.+|.||++++|||+||+|||+|++||..++.....- +...+++++++++.+++..-..- ..+ ...+.|+|++++
T Consensus 278 tSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w~dVa 357 (426)
T KOG1111|consen 278 TSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSWKDVA 357 (426)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCccceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999876443311 22256888888888887643222 333 566789999999
Q ss_pred HHHHHHhhhccccccC
Q 003992 687 QRFIEYSELNRILNNN 702 (781)
Q Consensus 687 erll~~Ye~~~vl~~~ 702 (781)
++..++|. ++...+
T Consensus 358 ~rTekvy~--r~~~t~ 371 (426)
T KOG1111|consen 358 ERTEKVYD--RAATTS 371 (426)
T ss_pred HHHHHHHH--HHhhcc
Confidence 99999999 877554
No 33
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=6.6e-30 Score=271.37 Aligned_cols=343 Identities=16% Similarity=0.084 Sum_probs=244.7
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++++..+.+ ||.+......+..|.+.|+ +|.+++..-. . . + . ..+.. .+++
T Consensus 1 ~i~~i~~~~~~--gG~~~~~~~l~~~l~~~~~-~v~~~~~~~~--~--~-~--------------~-~~~~~-~~i~--- 53 (365)
T cd03807 1 KVLHVITGLDV--GGAERMLVRLLKGLDRDRF-EHVVISLTDR--G--E-L--------------G-EELEE-AGVP--- 53 (365)
T ss_pred CeEEEEeeccC--ccHHHHHHHHHHHhhhccc-eEEEEecCcc--h--h-h--------------h-HHHHh-cCCe---
Confidence 68999998876 7877766778999998885 8888764210 0 0 0 0 00100 1221
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhh-cC-CEEEEEECCcHHHHHHhhcchh
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK-FN-HVVGVVHTNYLEYIKREKNGAL 468 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk-~~-pvV~ivHt~y~~y~~~~~~~~~ 468 (781)
+...+... ..........+.+++++.+||+||++.+... .+. ...... .+ +++..+|....... ..
T Consensus 54 -v~~~~~~~--~~~~~~~~~~~~~~~~~~~~div~~~~~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~------~~ 121 (365)
T cd03807 54 -VYCLGKRP--GRPDPGALLRLYKLIRRLRPDVVHTWMYHAD-LYG--GLAARLAGVPPVIWGIRHSDLDLG------KK 121 (365)
T ss_pred -EEEEeccc--ccccHHHHHHHHHHHHhhCCCEEEecccccc-HHH--HHHHHhcCCCcEEEEecCCccccc------ch
Confidence 11111110 0111223345778888999999999865432 222 112222 34 88888887653311 01
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEcChhhhhc------C-CCcEEeeCCCCCCCCCCCcc--hhhHhhhCcCCCCcEEEEEe
Q 003992 469 QAFFVKHINNWVTRAYCDKVLRLSAATQDL------P-KSVICNVHGVNPKFLQIGEK--VATDREQGQQAFSKGAYFLG 539 (781)
Q Consensus 469 ~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l------~-~kivvi~nGVD~~~f~p~~~--~~~r~~~Gi~~~~~~ILfVG 539 (781)
.......+.+++.+ .+|.++++|...++. . .++.+++||+|...+.+... ...+++++++++.+.++|+|
T Consensus 122 ~~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 200 (365)
T cd03807 122 STRLVARLRRLLSS-FIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVA 200 (365)
T ss_pred hHhHHHHHHHHhcc-ccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEec
Confidence 12223344444444 689999999976652 1 25678899999766544322 22345677777788999999
Q ss_pred eccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHH-hcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCC
Q 003992 540 KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK-RLDLN--LNFQKGRDHADDSLHGYKVFINPSISDV 616 (781)
Q Consensus 540 RL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~-~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~Eg 616 (781)
++.+.||++.+++++..+.++.++++|+|+|.|+....++.... +.++. |.|+|..++...+|+.||++++||..|+
T Consensus 201 ~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~ 280 (365)
T cd03807 201 RLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEG 280 (365)
T ss_pred ccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCcccc
Confidence 99999999999999999988889999999999998888877776 66665 9999988888899999999999999999
Q ss_pred ChHHHHHHHHhCCcEEEeCCCCcceeecCCcc--ccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHH
Q 003992 617 LCTATAEALAMGKFVICADHPSNEFFRSFPNC--LTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQR 688 (781)
Q Consensus 617 fGlviLEAMA~G~PVVaSd~gg~g~L~~~~ng--v~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaer 688 (781)
+|++++||||||+|||+++.++...+... ++ +..+|+++++++|.+++++++.+.++ ...+.|||+.++++
T Consensus 281 ~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~-~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 359 (365)
T cd03807 281 FPNVLLEAMACGLPVVATDVGDNAELVGD-TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEA 359 (365)
T ss_pred CCcHHHHHHhcCCCEEEcCCCChHHHhhc-CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999988765544 34 34489999999999999998776665 34567999999999
Q ss_pred HHHHhh
Q 003992 689 FIEYSE 694 (781)
Q Consensus 689 ll~~Ye 694 (781)
+.++|+
T Consensus 360 ~~~~y~ 365 (365)
T cd03807 360 YEELYR 365 (365)
T ss_pred HHHHhC
Confidence 999985
No 34
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=4.9e-30 Score=276.15 Aligned_cols=332 Identities=18% Similarity=0.133 Sum_probs=229.4
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++++..|+|..+|.+......+.+|.+.|+ +|++++..-........+ .+.
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~~~~~~----------------------~~~---- 53 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGI-EVAVLCASPEPKGRDEER----------------------NGH---- 53 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCC-ceEEEecCCCCcchhhhc----------------------cCc----
Confidence 69999999999988888777778999999985 999987531110000000 000
Q ss_pred eeeccCCcccccccccCchHhHHh-hcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchh
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQ-FIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL 468 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k-~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~ 468 (781)
.+...+..... .........+.. .+...+||+||++.+.....+. ..+.. .+ +++.++|++..... .
T Consensus 54 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~--~~~~~-~~~~~i~~~h~~~~~~~-------~ 122 (357)
T cd03795 54 RVIRAPSLLNV-ASTPFSPSFFKQLKKLAKKADVIHLHFPNPLADLA--LLLLP-RKKPVVVHWHSDIVKQK-------L 122 (357)
T ss_pred eEEEeeccccc-ccccccHHHHHHHHhcCCCCCEEEEecCcchHHHH--HHHhc-cCceEEEEEcChhhccc-------h
Confidence 00000000000 000000011111 1557899999999877654433 22222 34 88889987542210 1
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEcChhhhh-------cCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 469 QAFFVKHINNWVTRAYCDKVLRLSAATQD-------LPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 469 ~~~l~k~l~r~l~r~~aD~VI~vS~~~k~-------l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
...++..+.+++.+ .||.|+++|+...+ ...++.+++||+|...+.+...... .......+.+.++|+|++
T Consensus 123 ~~~~~~~~~~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~~ 200 (357)
T cd03795 123 LLKLYRPLQRRFLR-RADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGRL 200 (357)
T ss_pred hhhhhhHHHHHHHH-hcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEeccc
Confidence 12223344455554 69999999997655 1246788999999877654322111 122334467889999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccC--CC
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSI--SD 615 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~--~E 615 (781)
.+.||++.+++++.++. +++++|+|+|+....+++.+++.++. |.|+|++++.+ .+|+.||++++||. .|
T Consensus 201 ~~~K~~~~li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e 276 (357)
T cd03795 201 VYYKGLDVLLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSE 276 (357)
T ss_pred ccccCHHHHHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccc
Confidence 99999999999999885 79999999999999999988777765 99999999765 89999999999996 59
Q ss_pred CChHHHHHHHHhCCcEEEeCCCCcceee-c-CCcccc--CCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHH
Q 003992 616 VLCTATAEALAMGKFVICADHPSNEFFR-S-FPNCLT--YKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAA 685 (781)
Q Consensus 616 gfGlviLEAMA~G~PVVaSd~gg~g~L~-~-~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~i 685 (781)
+||++++|||+||+|||+++.++...+. . +.+|+. .+|+++++++|.++++|++.+.+| ...+.|||+.+
T Consensus 277 ~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 277 AFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred ccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 9999999999999999999999875433 2 556643 389999999999999999887777 23467888875
Q ss_pred H
Q 003992 686 T 686 (781)
Q Consensus 686 a 686 (781)
+
T Consensus 357 ~ 357 (357)
T cd03795 357 V 357 (357)
T ss_pred C
Confidence 3
No 35
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=7.2e-30 Score=277.55 Aligned_cols=266 Identities=15% Similarity=0.142 Sum_probs=202.4
Q ss_pred HHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEE
Q 003992 412 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLR 490 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~ 490 (781)
+..++++++||+||++.... ++.. ...+++.+ |++.++|............ .........+.+.+.+ .+|.|++
T Consensus 74 ~~~~~~~~~~dvvh~~~~~~-~~~~--~~~~~~~~~p~i~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~d~ii~ 148 (367)
T cd05844 74 LRRLLRRHRPDLVHAHFGFD-GVYA--LPLARRLGVPLVVTFHGFDATTSLALLL-RSRWALYARRRRRLAR-RAALFIA 148 (367)
T ss_pred HHHHHHhhCCCEEEeccCch-HHHH--HHHHHHcCCCEEEEEeCccccccchhhc-ccchhHHHHHHHHHHH-hcCEEEE
Confidence 44577889999999986543 2322 34556667 9999999632211111110 0011223334444444 6999999
Q ss_pred cChhhhhcC-------CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC
Q 003992 491 LSAATQDLP-------KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG 563 (781)
Q Consensus 491 vS~~~k~l~-------~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~ 563 (781)
+|+.+++.. .++.+++||+|.+.+.+... ....+.++|+|++.+.||++.+++|+..+.++.++
T Consensus 149 ~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~---------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 149 VSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATP---------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPE 219 (367)
T ss_pred CCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCC---------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCC
Confidence 999877621 25678999999877654211 12356899999999999999999999999888899
Q ss_pred cEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccC------CCCChHHHHHHHHhCCcEEE
Q 003992 564 FKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSI------SDVLCTATAEALAMGKFVIC 633 (781)
Q Consensus 564 i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~------~EgfGlviLEAMA~G~PVVa 633 (781)
++|+|+|+|+..+++++.++++++. |.|+|++++.+ .+|+.||++|+||. .||||++++||||||+|||+
T Consensus 220 ~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~ 299 (367)
T cd05844 220 VRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA 299 (367)
T ss_pred eEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEE
Confidence 9999999999999999999987765 99999998765 89999999999997 59999999999999999999
Q ss_pred eCCCCcceee-cCCccccC--CCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHH
Q 003992 634 ADHPSNEFFR-SFPNCLTY--KTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIE 691 (781)
Q Consensus 634 Sd~gg~g~L~-~~~ngv~~--~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~ 691 (781)
++.+++..+. .+.+|+.. .|+++++++|.++++|++.+.+| ...+.|||+..++++.+
T Consensus 300 s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 300 TRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred eCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999886544 44555433 79999999999999998877666 23468999999998865
No 36
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=1.4e-29 Score=284.76 Aligned_cols=351 Identities=13% Similarity=0.064 Sum_probs=230.1
Q ss_pred CCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCc
Q 003992 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFK 387 (781)
Q Consensus 308 ~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~ 387 (781)
+.++|+|+|++. .|.+......|..|++.|| +|+++++.-.....+.. ...
T Consensus 2 ~~~~~~~~~~~~----~~~~~R~~~~a~~L~~~G~-~V~ii~~~~~~~~~~~~---------------------~~~--- 52 (415)
T cd03816 2 KRKRVCVLVLGD----IGRSPRMQYHALSLAKHGW-KVDLVGYLETPPHDEIL---------------------SNP--- 52 (415)
T ss_pred CccEEEEEEecc----cCCCHHHHHHHHHHHhcCc-eEEEEEecCCCCCHHHh---------------------cCC---
Confidence 457999999975 4566666778999999996 99999753111000000 000
Q ss_pred ccceeeccCCcc--c-cccc---c----cCchHh-HHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECC
Q 003992 388 ADFKISFYPGKF--S-KERR---S----IIPAGD-TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTN 455 (781)
Q Consensus 388 ~~~~i~~yP~~~--~-~~~~---s----il~v~~-L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~ 455 (781)
++.+..++... . .... . +..... +..++...+||+||++.|..+.....+..+++..+ |+|.++|..
T Consensus 53 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~ 131 (415)
T cd03816 53 -NITIHPLPPPPQRLNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNY 131 (415)
T ss_pred -CEEEEECCCCccccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCc
Confidence 11111121110 0 0000 0 000011 22245567899999988654432221233455556 899999975
Q ss_pred cHHHHHHh-hcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-------CCCcEEeeCCCCCCCCCCCcchhhHhh--
Q 003992 456 YLEYIKRE-KNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDL-------PKSVICNVHGVNPKFLQIGEKVATDRE-- 525 (781)
Q Consensus 456 y~~y~~~~-~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-------~~kivvi~nGVD~~~f~p~~~~~~r~~-- 525 (781)
+..+.... +.......+...+++++.+ .||.||++|+.+++. ..++.+++||.+. .|.+.........
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~~~-~f~p~~~~~~~~~~~ 209 (415)
T cd03816 132 GYTILALKLGENHPLVRLAKWYEKLFGR-LADYNLCVTKAMKEDLQQFNNWKIRATVLYDRPPE-QFRPLPLEEKHELFL 209 (415)
T ss_pred hHHHHhcccCCCCHHHHHHHHHHHHHhh-cCCEeeecCHHHHHHHHhhhccCCCeeecCCCCHH-HceeCcHHHHHHHHH
Confidence 43222111 1111122355667777776 799999999987662 2467889999543 3333221111111
Q ss_pred ---------------hCc-CCCCcEEEEEeeccCccCHHHHHHHHHHhhc------cCCCcEEEEEeCCCCHHHHHHHHH
Q 003992 526 ---------------QGQ-QAFSKGAYFLGKMVWAKGYRELIDLLAKHKN------DLDGFKLDVFGNGEDAYEVQSAAK 583 (781)
Q Consensus 526 ---------------~Gi-~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~------~~p~i~LvIVG~Gp~~~~L~~~a~ 583 (781)
.++ ++...+++++||+.+.||++.|++|+..+.+ ..|+++|+|+|+|+.++++++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~ 289 (415)
T cd03816 210 KLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIK 289 (415)
T ss_pred hccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHH
Confidence 111 2234567899999999999999999999874 247899999999999999999999
Q ss_pred hcCCc-EEE-cCCCCCHH--HHHhcccEEEEccC---CCCChHHHHHHHHhCCcEEEeCCCCcceee-cCCccccCCCHH
Q 003992 584 RLDLN-LNF-QKGRDHAD--DSLHGYKVFINPSI---SDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLTYKTSE 655 (781)
Q Consensus 584 ~lgL~-V~F-lG~v~~~e--~ly~~ADVfVlPS~---~EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~~ngv~~~D~e 655 (781)
++++. +.| .|+++..+ .+|+.||++|.|+. .|++|++++||||||+|||++++|+..+++ ++.+|+..+|++
T Consensus 290 ~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~ 369 (415)
T cd03816 290 ELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSE 369 (415)
T ss_pred HcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHH
Confidence 99987 555 46776555 89999999997543 478999999999999999999999886655 466777668999
Q ss_pred HHHHHHHHHHhC---CCCCCCh----HHHHcCCHHHHHHHHH
Q 003992 656 DFVARVKEALAN---DPQPLTP----EQRYNLSWEAATQRFI 690 (781)
Q Consensus 656 eLa~aI~~LL~d---~~~r~~m----~~~~~fSWe~iaerll 690 (781)
+++++|.++++| ++.+.+| .....++|+..-++.+
T Consensus 370 ~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 411 (415)
T cd03816 370 ELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRWDENWDRVV 411 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCHHHHHHHHh
Confidence 999999999999 6777777 2334566776555544
No 37
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=7.5e-30 Score=279.62 Aligned_cols=350 Identities=15% Similarity=0.144 Sum_probs=236.0
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
++++.+.+..|-.+|++......+.+|++.|+ +|+++++............ ...+
T Consensus 8 ~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~-~V~v~~~~~~~~~~~~~~~------------------------~~~~ 62 (398)
T cd03800 8 HGSPLAQPGGADTGGQNVYVLELARALARLGH-EVDIFTRRIDDALPPIVEL------------------------APGV 62 (398)
T ss_pred cccccccCCCCCCCceeehHHHHHHHHhccCc-eEEEEEecCCcccCCcccc------------------------ccce
Confidence 44444455567788888888888999999986 9999975422111000000 0000
Q ss_pred eeeccC---CcccccccccC-----chHhHHhhcccC--CCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHH
Q 003992 391 KISFYP---GKFSKERRSII-----PAGDTSQFIPSK--DADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEY 459 (781)
Q Consensus 391 ~i~~yP---~~~~~~~~sil-----~v~~L~k~I~~~--kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y 459 (781)
.+..++ ..+... ..+. ....+.+.++.. +||+||++.+. .++.. ..+++..+ |++.++|+.....
T Consensus 63 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~-~~~~~--~~~~~~~~~~~i~~~h~~~~~~ 138 (398)
T cd03800 63 RVVRVPAGPAEYLPK-EELWPYLDEFADDLLRFLRREGGRPDLIHAHYWD-SGLVA--LLLARRLGIPLVHTFHSLGAVK 138 (398)
T ss_pred EEEecccccccCCCh-hhcchhHHHHHHHHHHHHHhcCCCccEEEEecCc-cchHH--HHHHhhcCCceEEEeecccccC
Confidence 000000 000000 0001 012355556665 99999998643 23332 45566667 8999999754221
Q ss_pred HHHhhcchh-HHHHHHHHHHHHHHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCCCCcchhh-HhhhCcC
Q 003992 460 IKREKNGAL-QAFFVKHINNWVTRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQIGEKVAT-DREQGQQ 529 (781)
Q Consensus 460 ~~~~~~~~~-~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~p~~~~~~-r~~~Gi~ 529 (781)
......... ........++.+.+ .+|.++++|+..++. ..++.+++||+|...+.+...... +...+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~ 217 (398)
T cd03800 139 RRHLGAADTYEPARRIEAEERLLR-AADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRD 217 (398)
T ss_pred CcccccccccchhhhhhHHHHHHh-hCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccC
Confidence 111000000 11112233444555 699999999965441 124688999999877655432221 3344555
Q ss_pred CCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH------HHHHHHHHhcCCc--EEEcCCCCCHH--
Q 003992 530 AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA------YEVQSAAKRLDLN--LNFQKGRDHAD-- 599 (781)
Q Consensus 530 ~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~------~~L~~~a~~lgL~--V~FlG~v~~~e-- 599 (781)
.+.++++|+||+.+.||++.+++++..+.++.++++|+++|+|+.. ..++++++.+++. |.|+|+++..+
T Consensus 218 ~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 297 (398)
T cd03800 218 PDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLP 297 (398)
T ss_pred CCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHH
Confidence 6678999999999999999999999999887889999999998753 3456677777765 99999998766
Q ss_pred HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCcccc--CCCHHHHHHHHHHHHhCCCCCCCh--
Q 003992 600 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLT--YKTSEDFVARVKEALANDPQPLTP-- 674 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m-- 674 (781)
.+|+.||++++||..|++|++++||||||+|||+++.++...++. +.+|+. .+|+++++++|.+++++++.+.+|
T Consensus 298 ~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 377 (398)
T cd03800 298 ALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSR 377 (398)
T ss_pred HHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 899999999999999999999999999999999999988765443 445543 378999999999999998777766
Q ss_pred ---H-HHHcCCHHHHHHHHH
Q 003992 675 ---E-QRYNLSWEAATQRFI 690 (781)
Q Consensus 675 ---~-~~~~fSWe~iaerll 690 (781)
+ ..++|||+.++++++
T Consensus 378 ~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 378 AGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHhCCHHHHHHHHh
Confidence 2 237899999999886
No 38
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=1.2e-30 Score=296.91 Aligned_cols=373 Identities=16% Similarity=0.146 Sum_probs=233.5
Q ss_pred EEEEEeCccCCC--cCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc--ccc-ccccCC-chhhHHHHHHHHHhh
Q 003992 311 NVAIVTTASLPW--MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV--YPN-VTFCSP-EEQENYMRNWLEERV 384 (781)
Q Consensus 311 rIaI~TtaflP~--~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v--~p~-i~f~~p-~~qe~yir~~l~~ri 384 (781)
||+++|..+.|+ +||.+......+..|++.|| +|++++|.+........ ... ..+... ..+...++-|... .
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~-~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 78 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGH-DVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELP-V 78 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCC-eEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEE-e
Confidence 699999998887 77878777778999999996 99999997654221100 000 000000 0000000000000 0
Q ss_pred CCcccceeeccCCcc---------------cccccc-cCchHhHHhhccc--CCCcEEEECCCchhHHHHHHHHHHhh--
Q 003992 385 GFKADFKISFYPGKF---------------SKERRS-IIPAGDTSQFIPS--KDADIAILEEPEHLNWYHHGKRWTDK-- 444 (781)
Q Consensus 385 g~~~~~~i~~yP~~~---------------~~~~~s-il~v~~L~k~I~~--~kPDVIhl~~P~~l~~~~~g~~~akk-- 444 (781)
.++.+.+.+... ...... ++-.....+++.+ .+|||||+|+... +..+ ..+...
T Consensus 79 ---~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t-~~~~--~~l~~~~~ 152 (476)
T cd03791 79 ---DGVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHT-GLVP--ALLKEKYA 152 (476)
T ss_pred ---CCceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHH-HHHH--HHHHHhhc
Confidence 111111111000 000000 0000112334443 7999999997542 2222 222222
Q ss_pred ----cC-CEEEEEECCcHHH-----HHHhhcchh-HHHH--------HHHHHHHHHHhcCCEEEEcChhhhh-c------
Q 003992 445 ----FN-HVVGVVHTNYLEY-----IKREKNGAL-QAFF--------VKHINNWVTRAYCDKVLRLSAATQD-L------ 498 (781)
Q Consensus 445 ----~~-pvV~ivHt~y~~y-----~~~~~~~~~-~~~l--------~k~l~r~l~r~~aD~VI~vS~~~k~-l------ 498 (781)
.+ |+|.++|+..... ......... ..+. ...+.+.... +||.|+++|+..++ +
T Consensus 153 ~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~v~~vS~~~~~~i~~~~~~ 231 (476)
T cd03791 153 DPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIV-YADAVTTVSPTYAREILTPEFG 231 (476)
T ss_pred cccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHH-hcCcCeecCHhHHHHhCCCCCC
Confidence 24 9999999753211 000000000 0000 0112233333 69999999985543 2
Q ss_pred ----------CCCcEEeeCCCCCCCCCCCcc-------------------hhhHhhhCcC--CCCcEEEEEeeccCccCH
Q 003992 499 ----------PKSVICNVHGVNPKFLQIGEK-------------------VATDREQGQQ--AFSKGAYFLGKMVWAKGY 547 (781)
Q Consensus 499 ----------~~kivvi~nGVD~~~f~p~~~-------------------~~~r~~~Gi~--~~~~~ILfVGRL~~~KGi 547 (781)
..++.+|+||||.+.+.+... ...++++|++ ++.++++|+||+.++||+
T Consensus 232 ~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~ 311 (476)
T cd03791 232 EGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGI 311 (476)
T ss_pred cchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccH
Confidence 236789999999887765422 2245667764 678899999999999999
Q ss_pred HHHHHHHHHhhccCCCcEEEEEeCCCCH--HHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHH
Q 003992 548 RELIDLLAKHKNDLDGFKLDVFGNGEDA--YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAE 623 (781)
Q Consensus 548 d~LLeA~~~L~~~~p~i~LvIVG~Gp~~--~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLE 623 (781)
+.|++++.++.+. +++|+|+|+|+.. +.++++++++..++.|++..++.. .+|+.||++++||.+|+||++++|
T Consensus 312 ~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lE 389 (476)
T cd03791 312 DLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMY 389 (476)
T ss_pred HHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHH
Confidence 9999999998765 4999999999653 567777776544476655445443 789999999999999999999999
Q ss_pred HHHhCCcEEEeCCCCcceeec-CC------cccc--CCCHHHHHHHHHHHHhC---CCCCCCh---HHHHcCCHHHHHHH
Q 003992 624 ALAMGKFVICADHPSNEFFRS-FP------NCLT--YKTSEDFVARVKEALAN---DPQPLTP---EQRYNLSWEAATQR 688 (781)
Q Consensus 624 AMA~G~PVVaSd~gg~g~L~~-~~------ngv~--~~D~eeLa~aI~~LL~d---~~~r~~m---~~~~~fSWe~iaer 688 (781)
|||||+|||+++.||...++. +. +|+. ..|+++++++|.++++. ++.+.+| .....|||+.++++
T Consensus 390 Ama~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~ 469 (476)
T cd03791 390 AMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWDRSAKE 469 (476)
T ss_pred HhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCChHHHHHH
Confidence 999999999999998865443 33 5654 48999999999998864 3333344 23467999999999
Q ss_pred HHHHhh
Q 003992 689 FIEYSE 694 (781)
Q Consensus 689 ll~~Ye 694 (781)
+++.|+
T Consensus 470 ~~~~y~ 475 (476)
T cd03791 470 YLELYR 475 (476)
T ss_pred HHHHHh
Confidence 999997
No 39
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=3.8e-30 Score=275.94 Aligned_cols=344 Identities=15% Similarity=0.074 Sum_probs=237.5
Q ss_pred EEEEEeCccCC-CcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 311 NVAIVTTASLP-WMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 311 rIaI~TtaflP-~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
||+|++..+.| ..+|++......+.+|.+.|+ +|+++++.-........... .+. . .
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~-~v~~~~~~~~~~~~~~~~~~-~~~----------------~-~--- 58 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDP-EEVLLLLPGAPGLLLLPLRA-ALR----------------L-L--- 58 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCC-ceEEEEecCccccccccchh-ccc----------------c-c---
Confidence 69999999999 899999888889999999996 88888764221110000000 000 0 0
Q ss_pred ceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchh
Q 003992 390 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGAL 468 (781)
Q Consensus 390 ~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~ 468 (781)
+.....................+...+||+||++.+..... +..+ |++.++|+.+......... ..
T Consensus 59 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~~~~-~~ 125 (365)
T cd03809 59 ----LRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPEYFS-PG 125 (365)
T ss_pred ----cccccccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcccCC-HH
Confidence 00000000001111122334445568999999987654321 3334 8999999765432221111 11
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEcChhhhhc-----C---CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEee
Q 003992 469 QAFFVKHINNWVTRAYCDKVLRLSAATQDL-----P---KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 540 (781)
Q Consensus 469 ~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~---~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGR 540 (781)
....+..+.+.+.+ .+|.++++|+.+++. . .++.+++||+|...+....... +.......+.+.++|+|+
T Consensus 126 ~~~~~~~~~~~~~~-~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~ 203 (365)
T cd03809 126 FRRYFRRLLRRALR-RADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYVGT 203 (365)
T ss_pred HHHHHHHHHHHHHH-HcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEeCC
Confidence 12223344444444 699999999976652 1 3568899999987765533221 223334456789999999
Q ss_pred ccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCC
Q 003992 541 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISD 615 (781)
Q Consensus 541 L~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~E 615 (781)
+.+.||++.+++++..+.+..++++|+++|.++.. .......++.++. |.|+|++++.+ .+|+.||++++||..|
T Consensus 204 ~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e 283 (365)
T cd03809 204 IEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYE 283 (365)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhc
Confidence 99999999999999999988888999999987654 3333333445544 99999998776 8999999999999999
Q ss_pred CChHHHHHHHHhCCcEEEeCCCCcceeecCC-ccccCCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHH
Q 003992 616 VLCTATAEALAMGKFVICADHPSNEFFRSFP-NCLTYKTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRF 689 (781)
Q Consensus 616 gfGlviLEAMA~G~PVVaSd~gg~g~L~~~~-ngv~~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerl 689 (781)
++|++++||||+|+|||+++.|+...+.... ..+..+|+++++++|.++++|++.+.+| +...+|+|+.+++++
T Consensus 284 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 284 GFGLPVLEAMACGTPVIASNISSLPEVAGDAALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred cCCCCHHHHhcCCCcEEecCCCCccceecCceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999887655432 2245589999999999999999888777 346889999999988
Q ss_pred HH
Q 003992 690 IE 691 (781)
Q Consensus 690 l~ 691 (781)
++
T Consensus 364 ~~ 365 (365)
T cd03809 364 LD 365 (365)
T ss_pred hC
Confidence 63
No 40
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=1.6e-29 Score=277.98 Aligned_cols=324 Identities=13% Similarity=0.154 Sum_probs=227.1
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcC-CCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCc-
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFK- 387 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G-~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~- 387 (781)
|||++++.. +|..||++......+.+|.+.| +++|+++++.-.. .. .|+. ..+..
T Consensus 1 mkI~~~~~~-~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~-~~--------------------~~~~-~~~~~~ 57 (359)
T PRK09922 1 MKIAFIGEA-VSGFGGMETVISNVINTFEESKINCEMFFFCRNDKM-DK--------------------AWLK-EIKYAQ 57 (359)
T ss_pred CeeEEeccc-ccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC-Ch--------------------HHHH-hcchhc
Confidence 899999875 4555998888888899999993 2489888763110 00 0110 01100
Q ss_pred --ccceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC---CEEEEEECCcHHHHHH
Q 003992 388 --ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN---HVVGVVHTNYLEYIKR 462 (781)
Q Consensus 388 --~~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~---pvV~ivHt~y~~y~~~ 462 (781)
+...+.++. .......+.+.+++.+||+||++++... ++. ...++..+ +++.+.|..+....
T Consensus 58 ~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~Dii~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~h~~~~~~~-- 124 (359)
T PRK09922 58 SFSNIKLSFLR--------RAKHVYNFSKWLKETQPDIVICIDVISC-LYA--NKARKKSGKQFKIFSWPHFSLDHKK-- 124 (359)
T ss_pred ccccchhhhhc--------ccHHHHHHHHHHHhcCCCEEEEcCHHHH-HHH--HHHHHHhCCCCeEEEEecCcccccc--
Confidence 000011100 0111345778899999999999986543 332 23333333 44555565432110
Q ss_pred hhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcC-------CCcEEeeCCCCCCC-CCCCcchhhHhhhCcCCCCcE
Q 003992 463 EKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLP-------KSVICNVHGVNPKF-LQIGEKVATDREQGQQAFSKG 534 (781)
Q Consensus 463 ~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~-------~kivvi~nGVD~~~-f~p~~~~~~r~~~Gi~~~~~~ 534 (781)
. ..... + ..+|.++++|+.+++.. .++.+++||+|.+. ..+... ..+++.
T Consensus 125 ---------~-~~~~~-~--~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~~---------~~~~~~ 182 (359)
T PRK09922 125 ---------H-AECKK-I--TCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPPE---------RDKPAV 182 (359)
T ss_pred ---------h-hhhhh-h--hcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCcc---------cCCCcE
Confidence 0 00111 1 26999999999876621 24688999999543 222111 124578
Q ss_pred EEEEeeccC--ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH----HHHhccc
Q 003992 535 AYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD----DSLHGYK 606 (781)
Q Consensus 535 ILfVGRL~~--~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e----~ly~~AD 606 (781)
++|+||+.+ .||++.+++++.++. ++++|+|+|+|++.+++++.++++++. |.|+|++++.. ++|+.+|
T Consensus 183 i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 183 FLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred EEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 999999974 599999999999874 379999999999999999999988876 99999987642 6788899
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeC-CCCcceee-cCCccc--cCCCHHHHHHHHHHHHhCCCCCCCh---HHHHc
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICAD-HPSNEFFR-SFPNCL--TYKTSEDFVARVKEALANDPQPLTP---EQRYN 679 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd-~gg~g~L~-~~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m---~~~~~ 679 (781)
+||+||.+||||++++||||||+|||+++ .++...++ ++.+|+ ..+|+++++++|.++++|++.+... ....+
T Consensus 260 ~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 339 (359)
T PRK09922 260 ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIER 339 (359)
T ss_pred EEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999 77775444 455663 4599999999999999999865322 55688
Q ss_pred CCHHHHHHHHHHHhh
Q 003992 680 LSWEAATQRFIEYSE 694 (781)
Q Consensus 680 fSWe~iaerll~~Ye 694 (781)
|+-+..++++.++|+
T Consensus 340 ~~~~~~~~~~~~~~~ 354 (359)
T PRK09922 340 FYEVLYFKNLNNALF 354 (359)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999999998
No 41
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=4.5e-29 Score=264.46 Aligned_cols=351 Identities=19% Similarity=0.176 Sum_probs=246.3
Q ss_pred EEEEeCccCCC-cCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 312 VAIVTTASLPW-MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 312 IaI~TtaflP~-~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
|+|+|..|+|. -+|.+......+.+|.+.|+ +|+++++.-............ +. .. .......
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~----~~---~~--------~~~~~~~ 64 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGV-EVTVLAPGPWGPKLLDLLKGR----LV---GV--------ERLPVLL 64 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCC-ceEEEecCCCCCCchhhcccc----cc---cc--------cccccCc
Confidence 68898888876 67777777778899998986 999998642211110000000 00 00 0000000
Q ss_pred eeeccCCcccccccccCchHhHHhhcc--cCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcch
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 467 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~--~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~ 467 (781)
.....+.. ..........+.+.+. ..+||+||++.+....+.. ....+..+ |++..+|+.+......
T Consensus 65 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~----- 134 (377)
T cd03798 65 PVVPLLKG---PLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAA--ALLKRKLGIPLVVTLHGSDVNLLPR----- 134 (377)
T ss_pred chhhcccc---chhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHH--HHHHHhcCCCEEEEeecchhcccCc-----
Confidence 00000000 0001112234677787 8999999999665554443 44555555 9999999765332111
Q ss_pred hHHHHHHHHHHHHHHhcCCEEEEcChhhhhc------C-CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEee
Q 003992 468 LQAFFVKHINNWVTRAYCDKVLRLSAATQDL------P-KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 540 (781)
Q Consensus 468 ~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l------~-~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGR 540 (781)
........+.+.+ .+|.++++|+..++. . .++.+++||+|...+.+...... ...+.....+.++|+|+
T Consensus 135 --~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~ 210 (377)
T cd03798 135 --KRLLRALLRRALR-RADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVGR 210 (377)
T ss_pred --hhhHHHHHHHHHh-cCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEecc
Confidence 0122333444444 699999999977652 2 35688899999887765432211 22333445778999999
Q ss_pred ccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCC
Q 003992 541 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDV 616 (781)
Q Consensus 541 L~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~Eg 616 (781)
+.+.||++.+++++..+.++.++++++++|.|+....+++.+++.++. |.++|++++.+ .+|+.||++++||..|+
T Consensus 211 ~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~ 290 (377)
T cd03798 211 LVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREG 290 (377)
T ss_pred CccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhcc
Confidence 999999999999999998888899999999999998898888877765 99999998876 89999999999999999
Q ss_pred ChHHHHHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHH
Q 003992 617 LCTATAEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQ 687 (781)
Q Consensus 617 fGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iae 687 (781)
+|++++|||+||+|||+++.++...+.. +.+|+ ..+|+++++++|.++++++.. ++ ...+.|+|+..++
T Consensus 291 ~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~ 368 (377)
T cd03798 291 FGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAE 368 (377)
T ss_pred CChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999998765443 34333 448999999999999999874 22 5678899999999
Q ss_pred HHHHHhh
Q 003992 688 RFIEYSE 694 (781)
Q Consensus 688 rll~~Ye 694 (781)
++.++|+
T Consensus 369 ~~~~~~~ 375 (377)
T cd03798 369 RLLELYR 375 (377)
T ss_pred HHHHHHh
Confidence 9999987
No 42
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.97 E-value=5.4e-29 Score=276.88 Aligned_cols=251 Identities=18% Similarity=0.210 Sum_probs=197.2
Q ss_pred ccCCCcEEEECCCchhHHHHHHHHHHhhc-C-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChh
Q 003992 417 PSKDADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAA 494 (781)
Q Consensus 417 ~~~kPDVIhl~~P~~l~~~~~g~~~akk~-~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~ 494 (781)
+..++||||+|+... .+. .+..+. + +++.++|..+.... + . .++.+|++|+.
T Consensus 96 ~~~~~~vi~v~~~~~--~~~---~~~~~~~~~~~v~~~h~~~~~~~-------------------~-~-~~~~ii~~S~~ 149 (380)
T PRK15484 96 TITKDSVIVIHNSMK--LYR---QIRERAPQAKLVMHMHNAFEPEL-------------------L-D-KNAKIIVPSQF 149 (380)
T ss_pred CCCCCcEEEEeCcHH--hHH---HHHhhCCCCCEEEEEecccChhH-------------------h-c-cCCEEEEcCHH
Confidence 346799999998543 222 223333 3 88888886542110 1 1 47999999998
Q ss_pred hhhc-----C-CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEE
Q 003992 495 TQDL-----P-KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDV 568 (781)
Q Consensus 495 ~k~l-----~-~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvI 568 (781)
+++. + .++.+++||+|...+.+......+..+++.++.++++|+||+.+.||++.|++|+.++.++.|+++|+|
T Consensus 150 ~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvi 229 (380)
T PRK15484 150 LKKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVV 229 (380)
T ss_pred HHHHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 7763 2 357889999998777654444456677777677899999999999999999999999988889999999
Q ss_pred EeCCCCH---------HHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCC-CCChHHHHHHHHhCCcEEEeCC
Q 003992 569 FGNGEDA---------YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSIS-DVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 569 VG~Gp~~---------~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~-EgfGlviLEAMA~G~PVVaSd~ 636 (781)
+|+|+.. +.+++++++++..|.|+|+++..+ .+|+.||+||+||.. |+||++++||||||+|||+|+.
T Consensus 230 vG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~ 309 (380)
T PRK15484 230 VGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK 309 (380)
T ss_pred EeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC
Confidence 9998642 356666667776799999997655 999999999999975 9999999999999999999999
Q ss_pred CCcceee-cCCccc---cCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 637 PSNEFFR-SFPNCL---TYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 637 gg~g~L~-~~~ngv---~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
||..+++ ++.+|+ ...|+++++++|.++++|++. .+| ...++|||+.++++++++|+
T Consensus 310 gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 310 GGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred CCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9987544 456664 248999999999999999864 445 23578999999999999997
No 43
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=6.9e-29 Score=293.12 Aligned_cols=277 Identities=10% Similarity=-0.048 Sum_probs=201.2
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEE-EEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVG-VVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 487 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~-ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~ 487 (781)
..+.+++++++|||||++.+... ++. ...++..+ |+|. ++|+....... . .. ...+..+.+.+....++.
T Consensus 390 ~~L~~~lk~~kpDIVH~h~~~a~-~lg--~lAa~~~gvPvIv~t~h~~~~~~~~---~-~~-~~~~~~l~~~l~~~~~~i 461 (694)
T PRK15179 390 TKLTDVMRSSVPSVVHIWQDGSI-FAC--ALAALLAGVPRIVLSVRTMPPVDRP---D-RY-RVEYDIIYSELLKMRGVA 461 (694)
T ss_pred HHHHHHHHHcCCcEEEEeCCcHH-HHH--HHHHHHcCCCEEEEEeCCCccccch---h-HH-HHHHHHHHHHHHhcCCeE
Confidence 56888999999999999876542 332 33344445 7654 55654321110 0 00 112223333333334566
Q ss_pred EEEcChhhhh-------cC-CCcEEeeCCCCCCCCCCCcchh-hHh--hhCcCCCCcEEEEEeeccCccCHHHHHHHHHH
Q 003992 488 VLRLSAATQD-------LP-KSVICNVHGVNPKFLQIGEKVA-TDR--EQGQQAFSKGAYFLGKMVWAKGYRELIDLLAK 556 (781)
Q Consensus 488 VI~vS~~~k~-------l~-~kivvi~nGVD~~~f~p~~~~~-~r~--~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~ 556 (781)
+|+.|...++ .+ .++.+|+||||+..+.+..... .+. ....+.+.++|+++||+.+.||++.||+|+.+
T Consensus 462 ~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~ 541 (694)
T PRK15179 462 LSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQR 541 (694)
T ss_pred EEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHH
Confidence 7777775433 12 3678999999977665422111 111 11223446788999999999999999999999
Q ss_pred hhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 557 HKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 557 L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
+.++.|+++|+|+|+|+..+.++++++++++. |.|+|+.++...+|+.+|+||+||.+|+||++++||||||+|||+|
T Consensus 542 l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat 621 (694)
T PRK15179 542 FAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTT 621 (694)
T ss_pred HHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEE
Confidence 98888999999999999999999999999987 9999999888899999999999999999999999999999999999
Q ss_pred CCCCcceee-cCCcccc--CCC--HHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 635 DHPSNEFFR-SFPNCLT--YKT--SEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 635 d~gg~g~L~-~~~ngv~--~~D--~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
++||..+++ ++.+|+. .+| +++++++|.+++.+......+ ...++|||+.++++++++|+
T Consensus 622 ~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 622 LAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999886554 4556644 345 468889988887754433333 23468999999999999997
No 44
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=2.3e-29 Score=280.05 Aligned_cols=208 Identities=14% Similarity=0.086 Sum_probs=162.9
Q ss_pred cCCEEEEcChhhhhcC-----CCcEEeeCCCCCCCCCCCcchhh--HhhhCcCCCCcEEEEEee-ccCccCHHHHHHHHH
Q 003992 484 YCDKVLRLSAATQDLP-----KSVICNVHGVNPKFLQIGEKVAT--DREQGQQAFSKGAYFLGK-MVWAKGYRELIDLLA 555 (781)
Q Consensus 484 ~aD~VI~vS~~~k~l~-----~kivvi~nGVD~~~f~p~~~~~~--r~~~Gi~~~~~~ILfVGR-L~~~KGid~LLeA~~ 555 (781)
.||.+|++|+..++.. .++.+++||||.+.|.+...... ....++.++.++++|+|| +.+.||++.|++|+.
T Consensus 156 ~ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~ 235 (396)
T cd03818 156 QADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALP 235 (396)
T ss_pred hCCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHH
Confidence 5999999999877632 46789999999888766432211 111223456778999998 999999999999999
Q ss_pred HhhccCCCcEEEEEeCCCC---------HHHHHHHHHhc----CCc-EEEcCCCCCHH--HHHhcccEEEEccCCCCChH
Q 003992 556 KHKNDLDGFKLDVFGNGED---------AYEVQSAAKRL----DLN-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCT 619 (781)
Q Consensus 556 ~L~~~~p~i~LvIVG~Gp~---------~~~L~~~a~~l----gL~-V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGl 619 (781)
.+.++.|+++|+|+|++.. ....+.+.+++ +.. |.|+|++++.+ .+|+.||++|+||..|++|+
T Consensus 236 ~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~ 315 (396)
T cd03818 236 RLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSW 315 (396)
T ss_pred HHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccch
Confidence 9988889999999997421 11222223332 233 99999998766 89999999999999999999
Q ss_pred HHHHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCCCCCCh-----H-HHHcCCHHHHHHHHH
Q 003992 620 ATAEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDPQPLTP-----E-QRYNLSWEAATQRFI 690 (781)
Q Consensus 620 viLEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m-----~-~~~~fSWe~iaerll 690 (781)
+++||||||+|||+|+.|+..+++. +.+|+ .++|+++++++|.++++|++.+.+| + ..+.|||+.++++++
T Consensus 316 ~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 316 SLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999999998866544 45664 3489999999999999999877777 2 335699999999886
Q ss_pred H
Q 003992 691 E 691 (781)
Q Consensus 691 ~ 691 (781)
+
T Consensus 396 ~ 396 (396)
T cd03818 396 A 396 (396)
T ss_pred C
Confidence 3
No 45
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=6.3e-29 Score=276.88 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=194.6
Q ss_pred hHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhh--cchhHHHH-------HHHHHHHH
Q 003992 411 DTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREK--NGALQAFF-------VKHINNWV 480 (781)
Q Consensus 411 ~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~--~~~~~~~l-------~k~l~r~l 480 (781)
.+.+.+++.++|+||++++... .+. ..+..+ |.|..+|+....+...+. ......++ ...+++.+
T Consensus 95 ~l~~~~~~~~~D~v~~~~~~~~-~~~----~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 169 (397)
T TIGR03087 95 WVNALLAAEPVDAIVVFSSAMA-QYV----TPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAI 169 (397)
T ss_pred HHHHHHhhCCCCEEEEeccccc-eec----cccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Confidence 4667788899999999875432 222 112234 888888864222211111 11111222 22345555
Q ss_pred HHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHH-
Q 003992 481 TRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELI- 551 (781)
Q Consensus 481 ~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LL- 551 (781)
.+ .+|.|+++|+..++. ..++.+++||||.++|.+..... ....++.+.++|+|++.+.||++.++
T Consensus 170 ~~-~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~----~~~~~~~~~ilf~G~l~~~k~~~~l~~ 244 (397)
T TIGR03087 170 AA-RFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYP----NPYPPGKRVLVFTGAMDYWPNIDAVVW 244 (397)
T ss_pred Hh-hCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCcccc----CCCCCCCcEEEEEEecCCccCHHHHHH
Confidence 55 699999999976552 13578899999988876532211 11123457899999999999999988
Q ss_pred ---HHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccC-CCCChHHHHHHHHh
Q 003992 552 ---DLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI-SDVLCTATAEALAM 627 (781)
Q Consensus 552 ---eA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~-~EgfGlviLEAMA~ 627 (781)
+++..+.+..|+++|+|+|+|+.. .++++.... .|.|+|++++...+|+.||+||+||. .||+|++++|||||
T Consensus 245 ~~~~~~~~l~~~~p~~~l~ivG~g~~~-~~~~l~~~~--~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~ 321 (397)
T TIGR03087 245 FAERVFPAVRARRPAAEFYIVGAKPSP-AVRALAALP--GVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAM 321 (397)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCChH-HHHHhccCC--CeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHc
Confidence 556667777799999999999864 444443322 39999999988899999999999997 59999999999999
Q ss_pred CCcEEEeCCCCcceeecCCcc-ccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 628 GKFVICADHPSNEFFRSFPNC-LTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 628 G~PVVaSd~gg~g~L~~~~ng-v~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
|+|||+|+.++.+......++ +..+|+++|+++|.++++|++.+.+| ...++|||+.+++++.++|+
T Consensus 322 G~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 322 AKPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred CCCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999998765553333333 33489999999999999998877777 23468999999999999987
No 46
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=7.5e-29 Score=267.73 Aligned_cols=317 Identities=17% Similarity=0.098 Sum_probs=226.5
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
|||+++++. +..+|.+......+.+|.++|| +|++++....
T Consensus 1 MkIl~~~~~--~~~gG~~~~~~~l~~~l~~~G~-~v~v~~~~~~------------------------------------ 41 (365)
T cd03825 1 MKVLHLNTS--DISGGAARAAYRLHRALQAAGV-DSTMLVQEKK------------------------------------ 41 (365)
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHHHhcCC-ceeEEEeecc------------------------------------
Confidence 899999764 5568888888888999999996 9998864200
Q ss_pred ceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhh-cC-CEEEEEECCcHHHHHH-----
Q 003992 390 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDK-FN-HVVGVVHTNYLEYIKR----- 462 (781)
Q Consensus 390 ~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk-~~-pvV~ivHt~y~~y~~~----- 462 (781)
.+.+.+...+|||||++.+....+.. ..+.+. .+ |+|.++|+.+......
T Consensus 42 ---------------------~~~~~~~~~~~diih~~~~~~~~~~~--~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~ 98 (365)
T cd03825 42 ---------------------ALISKIEIINADIVHLHWIHGGFLSI--EDLSKLLDRKPVVWTLHDMWPFTGGCHYPGG 98 (365)
T ss_pred ---------------------hhhhChhcccCCEEEEEccccCccCH--HHHHHHHcCCCEEEEcccCcccccccCCccc
Confidence 12234567889999998743321111 111222 25 9999999754221100
Q ss_pred ---h-------------hcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcC--------CCcEEeeCCCCCCCCCCCc
Q 003992 463 ---E-------------KNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLP--------KSVICNVHGVNPKFLQIGE 518 (781)
Q Consensus 463 ---~-------------~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~--------~kivvi~nGVD~~~f~p~~ 518 (781)
+ .......+........+. ..++.++++|+.+++.. .++.+++||+|...+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~ 177 (365)
T cd03825 99 CDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWA-DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRD 177 (365)
T ss_pred cccccccCCCCCCCCCCCcccHHHHHHHHHHHHhc-cCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCc
Confidence 0 000011111111111121 24788999999766532 3678899999988776655
Q ss_pred chhhHhhhCcCCCCcEEEEEeeccC--ccCHHHHHHHHHHhhcc-CCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCC
Q 003992 519 KVATDREQGQQAFSKGAYFLGKMVW--AKGYRELIDLLAKHKND-LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGR 595 (781)
Q Consensus 519 ~~~~r~~~Gi~~~~~~ILfVGRL~~--~KGid~LLeA~~~L~~~-~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v 595 (781)
....+..++++++..+++++|+... .||++.+++++..+.++ .++++++++|+|+..... ..+..|.|+|++
T Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~g~~ 252 (365)
T cd03825 178 KREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYLGSL 252 (365)
T ss_pred HHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-----cCCCceEecCCc
Confidence 5556667777777777777777765 89999999999998765 578999999998765332 233349999999
Q ss_pred CCHH---HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCcccc--CCCHHHHHHHHHHHHhCCC
Q 003992 596 DHAD---DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLT--YKTSEDFVARVKEALANDP 669 (781)
Q Consensus 596 ~~~e---~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~--~~D~eeLa~aI~~LL~d~~ 669 (781)
++.+ .+|+.||++++||..|+||++++|||+||+|||+++.++...+.. +.+++. ..|+++++++|.+++++++
T Consensus 253 ~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 253 NDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred CCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 9543 789999999999999999999999999999999999998865444 435543 3689999999999999987
Q ss_pred CCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 670 QPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 670 ~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
.+.+| .....|||+.++++++++|+
T Consensus 333 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 333 EREELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666 23467999999999999998
No 47
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=1.5e-28 Score=264.45 Aligned_cols=327 Identities=15% Similarity=0.073 Sum_probs=227.7
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|+|++|+|- ++......+..|.+.|+ +|+++++.-...... . . ..........|+..
T Consensus 1 ki~~~~~~~~~~---~~~~~~~~~~~L~~~g~-~v~v~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~------------ 60 (355)
T cd03799 1 KIAYLVKEFPRL---SETFILREILALEAAGH-EVEIFSLRPPEDTLV--H-P-EDRAELARTRYLAR------------ 60 (355)
T ss_pred CEEEECCCCCCc---chHHHHHHHHHHHhCCC-eEEEEEecCcccccc--c-c-cccccccchHHHHH------------
Confidence 699999998664 34445566889999996 999998642211100 0 0 00000000111100
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
....+.....+.+.+++.+||+||++.+....... ....+..+ +++.++|....... ..
T Consensus 61 -----------~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~--- 120 (355)
T cd03799 61 -----------SLALLAQALVLARELRRLGIDHIHAHFGTTPATVA--MLASRLGGIPYSFTAHGKDIFRS----PD--- 120 (355)
T ss_pred -----------HHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHH--HHHHHhcCCCEEEEEeccccccc----Cc---
Confidence 00011112345566678899999998764332222 22222334 88888885321110 00
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
. ...+...+ .+|.++++|+..++. ..++.+++||+|...+.+.. .........++|+|++
T Consensus 121 ~----~~~~~~~~-~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-------~~~~~~~~~i~~~g~~ 188 (355)
T cd03799 121 A----IDLDEKLA-RADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP-------PPPPGEPLRILSVGRL 188 (355)
T ss_pred h----HHHHHHHh-hCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc-------ccccCCCeEEEEEeee
Confidence 0 12223333 599999999977652 12568899999977765432 0112346788999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCC---
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSIS--- 614 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~--- 614 (781)
.+.||++.+++++..+.+..++++++++|+|+..+.+++.+++.++. |.|+|+++..+ .+|+.||++++||..
T Consensus 189 ~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~ 268 (355)
T cd03799 189 VEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAAD 268 (355)
T ss_pred ccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCC
Confidence 99999999999999998878899999999999999999999888765 99999998665 899999999999999
Q ss_pred ---CCChHHHHHHHHhCCcEEEeCCCCcceeec-CCccccC--CCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCH
Q 003992 615 ---DVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLTY--KTSEDFVARVKEALANDPQPLTP------EQRYNLSW 682 (781)
Q Consensus 615 ---EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~~--~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSW 682 (781)
|+||++++||||||+|||+++.++.+.+.. +.+|+.. +|+++++++|.++++++..+.+| .....|||
T Consensus 269 ~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~ 348 (355)
T cd03799 269 GDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDI 348 (355)
T ss_pred CCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999998866554 4366444 69999999999999998876666 23467999
Q ss_pred HHHHHHH
Q 003992 683 EAATQRF 689 (781)
Q Consensus 683 e~iaerl 689 (781)
+..++++
T Consensus 349 ~~~~~~l 355 (355)
T cd03799 349 RKQAARL 355 (355)
T ss_pred HHHhhcC
Confidence 9988763
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.9e-29 Score=287.07 Aligned_cols=266 Identities=15% Similarity=0.136 Sum_probs=204.7
Q ss_pred CCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHh------hcchhHHHH---HHHHHHHHHHhcCCEE
Q 003992 419 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKRE------KNGALQAFF---VKHINNWVTRAYCDKV 488 (781)
Q Consensus 419 ~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~------~~~~~~~~l---~k~l~r~l~r~~aD~V 488 (781)
.++||||++++...++.+ ..++++++ |+|.+.|..|....... .....+..+ +..+.+...+ .||.|
T Consensus 172 ~~~dviH~~s~~~~g~~~--~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLG--ALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQ-AADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHH--HHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 478999999876555544 55666667 99999998765321100 011111221 2333344444 69999
Q ss_pred EEcChhhhhc-------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccC
Q 003992 489 LRLSAATQDL-------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDL 561 (781)
Q Consensus 489 I~vS~~~k~l-------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~ 561 (781)
+++|+..++. +.++.+++||||.+.+.+.... ....+.++++|+||+.+.||++.+++|+..+.++.
T Consensus 249 i~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 249 TTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred EecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCcccc------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 9999976652 1357899999998777553221 12335678999999999999999999999999888
Q ss_pred CCcEEEEEeCCCC----HHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeC
Q 003992 562 DGFKLDVFGNGED----AYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 635 (781)
Q Consensus 562 p~i~LvIVG~Gp~----~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd 635 (781)
|+++++|+|+|+. .++++++++++++. |.|+| ..+..++|+.+|++|+||..|+||++++||||||+|||+|+
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd 401 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATD 401 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECC
Confidence 9999999999853 36678888888885 99999 55666899999999999999999999999999999999999
Q ss_pred CCCcceeecC-------Ccc--ccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 636 HPSNEFFRSF-------PNC--LTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 636 ~gg~g~L~~~-------~ng--v~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
.|++..++.. .+| +...|+++++++|.++++|++.+.+| ...+.|+|+.++++|.++|+
T Consensus 402 ~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 402 VGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred CCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9988665544 244 34489999999999999999887777 24567999999999999995
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=1.5e-28 Score=261.96 Aligned_cols=340 Identities=17% Similarity=0.119 Sum_probs=228.4
Q ss_pred EEEEEeCccCCCcC-cccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcccccc-ccccCCchhhHHHHHHHHHhhCCcc
Q 003992 311 NVAIVTTASLPWMT-GTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKA 388 (781)
Q Consensus 311 rIaI~TtaflP~~~-G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~-i~f~~p~~qe~yir~~l~~rig~~~ 388 (781)
||+|+|..|+|..+ |........+..|.+.|+ +|+++++.-........... ....... .+. ....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~ 68 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGH-EVAVLTAGEDPPRQDKEVIGVVVYGRPI-------DEV----LRSA 68 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCC-ceEEEeCCCCCCCcccccccceeecccc-------ccc----cCCC
Confidence 69999999998754 555556667999999985 99999864221111000000 0000000 000 0000
Q ss_pred cceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcch
Q 003992 389 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA 467 (781)
Q Consensus 389 ~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~ 467 (781)
....... ............+.+++++.+||+||++.+..+.... ..++++.+ |++.++|+.+.....
T Consensus 69 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~--~~~~~~~~~~~i~~~hd~~~~~~~------ 136 (359)
T cd03823 69 ---LPRDLFH-LSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSI--LRAARDRGIPIVLTLHDYWLICPR------ 136 (359)
T ss_pred ---chhhhhH-HHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHH--HHHHHhcCCCEEEEEeeeeeecch------
Confidence 0000000 0000001112346778888999999999875444332 34455566 999999975422110
Q ss_pred hHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-----C--CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEee
Q 003992 468 LQAFFVKHINNWVTRAYCDKVLRLSAATQDL-----P--KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGK 540 (781)
Q Consensus 468 ~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~--~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGR 540 (781)
...... ..|.++++|+..++. . .++.+++||+|...+.+... +...++..++|+|+
T Consensus 137 ---------~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~-------~~~~~~~~i~~~G~ 199 (359)
T cd03823 137 ---------QGLFKK-GGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR-------APPGGRLRFGFIGQ 199 (359)
T ss_pred ---------hhhhcc-CCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc-------CCCCCceEEEEEec
Confidence 011111 349999999977651 1 36788999999776644321 22345678899999
Q ss_pred ccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccC-CCCC
Q 003992 541 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSI-SDVL 617 (781)
Q Consensus 541 L~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~-~Egf 617 (781)
+.+.||++.+++++.++.+ ++++|+++|.|+......... .....|.|+|+++..+ .+|+.||++++||. .|++
T Consensus 200 ~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~ 276 (359)
T cd03823 200 LTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENF 276 (359)
T ss_pred CccccCHHHHHHHHHHHHh--cCcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCC
Confidence 9999999999999999876 789999999998876554443 2333499999997555 89999999999998 7999
Q ss_pred hHHHHHHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCCCCCCh--HHHHcCCHHHHHHHHHHH
Q 003992 618 CTATAEALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDPQPLTP--EQRYNLSWEAATQRFIEY 692 (781)
Q Consensus 618 GlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~~r~~m--~~~~~fSWe~iaerll~~ 692 (781)
|++++||||||+|||+++.++...+.. +.+|+ ..+|+++++++|.++++|+..+..+ ...+.++.+.++++++++
T Consensus 277 ~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T cd03823 277 PLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLKL 356 (359)
T ss_pred ChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHHH
Confidence 999999999999999999988754433 33453 4478999999999999988877777 334456669999999999
Q ss_pred hh
Q 003992 693 SE 694 (781)
Q Consensus 693 Ye 694 (781)
|+
T Consensus 357 ~~ 358 (359)
T cd03823 357 YR 358 (359)
T ss_pred hh
Confidence 86
No 50
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.96 E-value=9.3e-28 Score=283.96 Aligned_cols=271 Identities=10% Similarity=0.102 Sum_probs=190.6
Q ss_pred CCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcc-hhH---H--HH-HHHHHHHHHHhcCCEEEE
Q 003992 419 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNG-ALQ---A--FF-VKHINNWVTRAYCDKVLR 490 (781)
Q Consensus 419 ~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~-~~~---~--~l-~k~l~r~l~r~~aD~VI~ 490 (781)
.+||+||.|... .++.+ ..++++.+ |.+.+.|+.-. .++...+ .+. . .+ .++.-.......||.||+
T Consensus 384 ~~pDlIHahy~d-~glva--~lla~~lgVP~v~t~HsL~~--~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IIt 458 (784)
T TIGR02470 384 GKPDLIIGNYSD-GNLVA--SLLARKLGVTQCTIAHALEK--TKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIIT 458 (784)
T ss_pred CCCCEEEECCCc-hHHHH--HHHHHhcCCCEEEECCcchh--hcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEE
Confidence 479999998643 23433 67788888 99999997521 1111110 000 0 11 111112223336999999
Q ss_pred cChhh-h-------hc---------------------CCCcEEeeCCCCCCCCCCCcchhh-------------------
Q 003992 491 LSAAT-Q-------DL---------------------PKSVICNVHGVNPKFLQIGEKVAT------------------- 522 (781)
Q Consensus 491 vS~~~-k-------~l---------------------~~kivvi~nGVD~~~f~p~~~~~~------------------- 522 (781)
.|... . ++ ..++.++++|||+..|.|......
T Consensus 459 sT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~ 538 (784)
T TIGR02470 459 STYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDN 538 (784)
T ss_pred CcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhH
Confidence 99632 1 00 135678889999876655322111
Q ss_pred HhhhCc--CCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC------------HHHHHHHHHhcCCc
Q 003992 523 DREQGQ--QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED------------AYEVQSAAKRLDLN 588 (781)
Q Consensus 523 r~~~Gi--~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~------------~~~L~~~a~~lgL~ 588 (781)
++.+|. .+++++|++|||+.+.||++.|++|+.++....++++|+|+|+|+. .+.+.++++++++.
T Consensus 539 ~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~ 618 (784)
T TIGR02470 539 DEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH 618 (784)
T ss_pred HHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC
Confidence 234554 4577899999999999999999999988765556799999998753 14566778888876
Q ss_pred --EEEcCCCCC---HHHHHh----cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCccee-ecCCccc--cCCCHHH
Q 003992 589 --LNFQKGRDH---ADDSLH----GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFF-RSFPNCL--TYKTSED 656 (781)
Q Consensus 589 --V~FlG~v~~---~e~ly~----~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L-~~~~ngv--~~~D~ee 656 (781)
|.|+|...+ ..++|+ .+|+||+||++|+||++++||||||+|||+|++||..++ .++.+|+ .+.|+++
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~ea 698 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEE 698 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHH
Confidence 999997632 225554 357999999999999999999999999999999998654 4466664 4489999
Q ss_pred HHHHHHHHH----hCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 657 FVARVKEAL----ANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 657 La~aI~~LL----~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
++++|.+++ .|+..+.+| ...++|||+.++++++....
T Consensus 699 LA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 699 AAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAG 746 (784)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999886 577676666 23478999999999987765
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=5.3e-28 Score=255.63 Aligned_cols=333 Identities=18% Similarity=0.171 Sum_probs=227.9
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+++|.. .+|.+......+.+|.+.|+ +|+++++.-.... ... ..++
T Consensus 1 kIl~i~~~----~~g~~~~~~~l~~~L~~~g~-~v~~~~~~~~~~~---~~~--------------------~~~~---- 48 (359)
T cd03808 1 KILHIVTV----DGGLYSFRLPLIKALRAAGY-EVHVVAPPGDELE---ELE--------------------ALGV---- 48 (359)
T ss_pred CeeEEEec----chhHHHHHHHHHHHHHhcCC-eeEEEecCCCccc---ccc--------------------cCCc----
Confidence 68999887 35666566667889988885 9999976421110 000 0011
Q ss_pred eeeccCCcc--cccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHh-hcC-CEEEEEECCcHHHHHHhhcc
Q 003992 391 KISFYPGKF--SKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTD-KFN-HVVGVVHTNYLEYIKREKNG 466 (781)
Q Consensus 391 ~i~~yP~~~--~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~ak-k~~-pvV~ivHt~y~~y~~~~~~~ 466 (781)
.+..+|... ......+.....+.+.+++.+||+||++..... ++. ...++ ... +++...|........ .
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~~----~ 121 (359)
T cd03808 49 KVIPIPLDRRGINPFKDLKALLRLYRLLRKERPDIVHTHTPKPG-ILG--RLAARLAGVPKVIYTVHGLGFVFTS----G 121 (359)
T ss_pred eEEeccccccccChHhHHHHHHHHHHHHHhcCCCEEEEccccch-hHH--HHHHHHcCCCCEEEEecCcchhhcc----c
Confidence 111111100 000111112345677888899999999865432 222 22222 223 677777765432211 1
Q ss_pred hhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc---------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEE
Q 003992 467 ALQAFFVKHINNWVTRAYCDKVLRLSAATQDL---------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYF 537 (781)
Q Consensus 467 ~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l---------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILf 537 (781)
.........+.++..+ .+|.++++|+..++. ...+.++++|+|+..+.+.... ...+.+.++|
T Consensus 122 ~~~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~ 193 (359)
T cd03808 122 GLKRRLYLLLERLALR-FTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP-------IPEDDPVFLF 193 (359)
T ss_pred hhHHHHHHHHHHHHHh-hccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-------cCCCCcEEEE
Confidence 1123344555666655 689999999977652 1234556789987766543221 1235678999
Q ss_pred EeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHH-HHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCC
Q 003992 538 LGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSA-AKRLDLN--LNFQKGRDHADDSLHGYKVFINPSIS 614 (781)
Q Consensus 538 VGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~-a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~ 614 (781)
+|++.+.||++.+++++..+.+..++++|+|+|.|+........ +.+.+.. |.|+|+.++...+|+.||++++||..
T Consensus 194 ~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~ 273 (359)
T cd03808 194 VARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYR 273 (359)
T ss_pred EeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcc
Confidence 99999999999999999999887889999999999887665543 4444443 99999977777999999999999999
Q ss_pred CCChHHHHHHHHhCCcEEEeCCCCcceeec-CCcccc--CCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHH
Q 003992 615 DVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLT--YKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAA 685 (781)
Q Consensus 615 EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~--~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~i 685 (781)
|++|++++|||+||+|||+++.++...+.. +.+|+. .+|+++++++|.+++.|++.+.++ ...+.|+|+.+
T Consensus 274 e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 353 (359)
T cd03808 274 EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIV 353 (359)
T ss_pred cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999998765443 455543 378999999999999998877666 23678999999
Q ss_pred HHHHH
Q 003992 686 TQRFI 690 (781)
Q Consensus 686 aerll 690 (781)
+++++
T Consensus 354 ~~~~~ 358 (359)
T cd03808 354 VKKLL 358 (359)
T ss_pred HHHhh
Confidence 98875
No 52
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.96 E-value=9.6e-28 Score=252.53 Aligned_cols=322 Identities=16% Similarity=0.141 Sum_probs=222.4
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||+|++..+. .+|+.......+.+|.+.|+ +|++++........... .... . .....
T Consensus 1 kIl~~~~~~~--~gG~~~~~~~l~~~l~~~g~-~v~v~~~~~~~~~~~~~--------~~~~----~-------~~~~~- 57 (353)
T cd03811 1 KILFVIPSLG--GGGAERVLLNLANGLDKRGY-DVTLVVLRDEGDYLELL--------PSNV----K-------LIPVR- 57 (353)
T ss_pred CeEEEeeccc--CCCcchhHHHHHHHHHhcCc-eEEEEEcCCCCcccccc--------ccch----h-------hhcee-
Confidence 6899988775 67877777778999988885 99999764221110000 0000 0 00000
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhH
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
..... ..........+.+.+++.+||+||++.+ ...++. ..+..+.+ |++..+|+.+.........
T Consensus 58 ~~~~~------~~~~~~~~~~~~~~~~~~~~dii~~~~~-~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~---- 124 (353)
T cd03811 58 VLKLK------SLRDLLAILRLRRLLRKEKPDVVISHLT-TTPNVL--ALLAARLGTKLIVWEHNSLSLELKRKLR---- 124 (353)
T ss_pred eeecc------cccchhHHHHHHHHHHhcCCCEEEEcCc-cchhHH--HHHHhhcCCceEEEEcCcchhhhccchh----
Confidence 00000 0011122345778888899999999987 222222 22222225 9999999876543221110
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChhhhhc-----C---CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAATQDL-----P---KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM 541 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~---~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL 541 (781)
...+.+.+.. .+|.++++|+.+++. . .++.+++||+|...+.+...... ..+.......++|+|++
T Consensus 125 ---~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g~~ 198 (353)
T cd03811 125 ---LLLLIRKLYR-RADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVGRL 198 (353)
T ss_pred ---HHHHHHhhcc-ccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEecc
Confidence 0023333333 699999999977652 2 46788999999877654332211 23344567889999999
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChH
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCT 619 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGl 619 (781)
.+.||++.+++++..+.+..++++|+++|.|+..+.+++.+.++++. |.|+|+.++..++|+.||++++||..|++|+
T Consensus 199 ~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~ 278 (353)
T cd03811 199 SPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPN 278 (353)
T ss_pred hhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCc
Confidence 99999999999999998888899999999999999999888888876 9999999888899999999999999999999
Q ss_pred HHHHHHHhCCcEEEeCCCCcceee-cCCcccc--CCCHHHH---HHHHHHHHhCCCCCCCh
Q 003992 620 ATAEALAMGKFVICADHPSNEFFR-SFPNCLT--YKTSEDF---VARVKEALANDPQPLTP 674 (781)
Q Consensus 620 viLEAMA~G~PVVaSd~gg~g~L~-~~~ngv~--~~D~eeL---a~aI~~LL~d~~~r~~m 674 (781)
+++|||+||+|||+++.|+..++. .+.+|+. .+|++++ ++++..++.++..+.++
T Consensus 279 ~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 339 (353)
T cd03811 279 VLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERL 339 (353)
T ss_pred HHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHH
Confidence 999999999999999999876544 3555543 3788888 55555555555544443
No 53
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.96 E-value=4.6e-28 Score=261.40 Aligned_cols=314 Identities=18% Similarity=0.126 Sum_probs=218.1
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccceeeccCCcccccc
Q 003992 324 TGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFSKER 403 (781)
Q Consensus 324 ~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~~i~~yP~~~~~~~ 403 (781)
||++......|.+|++.|+ +|+++++.-. .. ..+ +..|+. +..++.......
T Consensus 10 gG~e~~~~~l~~~L~~~g~-~v~v~~~~~~-------~~---------------~~~-~~~~~~----~~~~~~~~~~~~ 61 (355)
T cd03819 10 GGVERGTLELARALVERGH-RSLVASAGGR-------LV---------------AEL-EAEGSR----HIKLPFISKNPL 61 (355)
T ss_pred CcHHHHHHHHHHHHHHcCC-EEEEEcCCCc-------hH---------------HHH-HhcCCe----EEEccccccchh
Confidence 7888777888999999996 9998865210 00 000 011221 111111000011
Q ss_pred cccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHH
Q 003992 404 RSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTR 482 (781)
Q Consensus 404 ~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r 482 (781)
..+.....+.+.+++.+||+||++++.. .+.. ..+.+..+ |++.++|..+.... ..+.+.+
T Consensus 62 ~~~~~~~~l~~~~~~~~~dii~~~~~~~-~~~~--~~~~~~~~~~~i~~~h~~~~~~~---------------~~~~~~~ 123 (355)
T cd03819 62 RILLNVARLRRLIREEKVDIVHARSRAP-AWSA--YLAARRTRPPFVTTVHGFYSVNF---------------RYNAIMA 123 (355)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEECCCch-hHHH--HHHHHhcCCCEEEEeCCchhhHH---------------HHHHHHH
Confidence 1112234577788889999999987543 3333 33445556 99999997653221 1112223
Q ss_pred hcCCEEEEcChhhhhcC--------CCcEEeeCCCCCCCCCCCcch-----hhHhhhCcCCCCcEEEEEeeccCccCHHH
Q 003992 483 AYCDKVLRLSAATQDLP--------KSVICNVHGVNPKFLQIGEKV-----ATDREQGQQAFSKGAYFLGKMVWAKGYRE 549 (781)
Q Consensus 483 ~~aD~VI~vS~~~k~l~--------~kivvi~nGVD~~~f~p~~~~-----~~r~~~Gi~~~~~~ILfVGRL~~~KGid~ 549 (781)
.+|.++++|+.+++.. .++.+++||+|...+.+.... ..+++++..++.++++|+||+.+.||++.
T Consensus 124 -~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~ 202 (355)
T cd03819 124 -RGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEV 202 (355)
T ss_pred -hcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHH
Confidence 5999999999766521 256789999998777543211 13445566667788999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEeCCCCHHH----HHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEcc-CCCCChHHHH
Q 003992 550 LIDLLAKHKNDLDGFKLDVFGNGEDAYE----VQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPS-ISDVLCTATA 622 (781)
Q Consensus 550 LLeA~~~L~~~~p~i~LvIVG~Gp~~~~----L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS-~~EgfGlviL 622 (781)
+++++..+.+..++++++|+|.|+..+. +.+.+.++++. |.|+|+.++...+|+.||++++|| ..|+||++++
T Consensus 203 li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~ 282 (355)
T cd03819 203 FIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAV 282 (355)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHH
Confidence 9999999988778999999999976533 34556666664 999999777779999999999999 8999999999
Q ss_pred HHHHhCCcEEEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHH-hCCCCCCCh------HHHHcCCHHH
Q 003992 623 EALAMGKFVICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEAL-ANDPQPLTP------EQRYNLSWEA 684 (781)
Q Consensus 623 EAMA~G~PVVaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL-~d~~~r~~m------~~~~~fSWe~ 684 (781)
||||||+|||+++.++...+.. +.+|+ ..+|+++++++|..++ .+++.+.++ ....+|+|+.
T Consensus 283 EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 283 EAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999988765443 33453 4489999999997655 466666655 2346677764
No 54
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.96 E-value=5.9e-28 Score=277.66 Aligned_cols=265 Identities=12% Similarity=0.124 Sum_probs=193.9
Q ss_pred HHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEE
Q 003992 412 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLR 490 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~ 490 (781)
+.+.+...++||+|++.+...++.. +..... |.+.++|..............+....+....... ..+|.||+
T Consensus 203 f~~~L~~~~~di~i~dr~~~~~~~~----~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~--~~~D~iI~ 276 (500)
T TIGR02918 203 FLKQLNLTKKDIIILDRSTGIGQAV----LENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNA--DYIDFFIT 276 (500)
T ss_pred HHHHHhCCCCCEEEEcCCcccchHH----HhcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhch--hhCCEEEE
Confidence 3344456689999998877655432 223334 8888999743221111111010111111111111 14899999
Q ss_pred cChhhhh-----c------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhc
Q 003992 491 LSAATQD-----L------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN 559 (781)
Q Consensus 491 vS~~~k~-----l------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~ 559 (781)
+|+..++ + ..++.++|||++..++.+.. ......++|+||+.++||++.||+|+.++.+
T Consensus 277 ~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~ 346 (500)
T TIGR02918 277 ATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKK 346 (500)
T ss_pred CCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc----------ccCCeEEEEEeccccccCHHHHHHHHHHHHh
Confidence 9996544 1 23567899998765543211 0124578999999999999999999999998
Q ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 560 DLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 560 ~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+.|+++|+|+|+|+..+.++++++++++. |.|+|+. +..++|+.||+||+||.+||||++++||||||+|||+++++
T Consensus 347 ~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~ 425 (500)
T TIGR02918 347 SVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVN 425 (500)
T ss_pred hCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCC
Confidence 89999999999999999999999988876 9999986 45579999999999999999999999999999999999986
Q ss_pred -Ccc-eeecCCccccC--C----C----HHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHHHHhh
Q 003992 638 -SNE-FFRSFPNCLTY--K----T----SEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 638 -g~g-~L~~~~ngv~~--~----D----~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll~~Ye 694 (781)
|.. .+.++.+|+.. + | +++|+++|.++++ ++.+.+| +.++.|||+.+++++.++++
T Consensus 426 ~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 426 YGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred CCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 554 44556777543 2 2 8899999999994 4455566 56789999999999999987
No 55
>PLN00142 sucrose synthase
Probab=99.96 E-value=3.7e-27 Score=278.97 Aligned_cols=270 Identities=10% Similarity=0.095 Sum_probs=189.3
Q ss_pred CCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcch-h-----H-HHHHHH-HHHHHHHhcCCEEE
Q 003992 419 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGA-L-----Q-AFFVKH-INNWVTRAYCDKVL 489 (781)
Q Consensus 419 ~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~-~-----~-~~l~k~-l~r~l~r~~aD~VI 489 (781)
.+||+||.|.. ..++.+ ..++++++ |.|.+.|+.-.. ++...+. + . .+..+. .+.+... .||.||
T Consensus 407 ~~PDlIHaHYw-dsg~vA--~~La~~lgVP~v~T~HsL~k~--K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~-~Ad~II 480 (815)
T PLN00142 407 GKPDLIIGNYS-DGNLVA--SLLAHKLGVTQCTIAHALEKT--KYPDSDIYWKKFDDKYHFSCQFTADLIAMN-HADFII 480 (815)
T ss_pred CCCCEEEECCc-cHHHHH--HHHHHHhCCCEEEEcccchhh--hccccCCcccccchhhhhhhchHHHHHHHH-hhhHHH
Confidence 46999999843 233443 77888889 999999964211 1111000 0 0 111111 2333333 699999
Q ss_pred EcChhhhh--------c---------------------CCCcEEeeCCCCCCCCCCCcchh-------------------
Q 003992 490 RLSAATQD--------L---------------------PKSVICNVHGVNPKFLQIGEKVA------------------- 521 (781)
Q Consensus 490 ~vS~~~k~--------l---------------------~~kivvi~nGVD~~~f~p~~~~~------------------- 521 (781)
+.|..... + ..++.++++|+|...|.|.....
T Consensus 481 asT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~ 560 (815)
T PLN00142 481 TSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQ 560 (815)
T ss_pred hCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHH
Confidence 88863321 0 12567788999977554322111
Q ss_pred hHhhhCc--CCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC------H------HHHHHHHHhcCC
Q 003992 522 TDREQGQ--QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED------A------YEVQSAAKRLDL 587 (781)
Q Consensus 522 ~r~~~Gi--~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~------~------~~L~~~a~~lgL 587 (781)
.++.+|. .+++++|+++||+.+.||++.||+|+.++.+..++++|+|+|+|.+ . ..+.++++++++
T Consensus 561 ~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL 640 (815)
T PLN00142 561 NDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL 640 (815)
T ss_pred HHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC
Confidence 1123454 4456799999999999999999999998877667899999998821 1 346677888888
Q ss_pred c--EEEcCCCCC----HH--HHHh-cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCccee-ecCCccc--cCCCHH
Q 003992 588 N--LNFQKGRDH----AD--DSLH-GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFF-RSFPNCL--TYKTSE 655 (781)
Q Consensus 588 ~--V~FlG~v~~----~e--~ly~-~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L-~~~~ngv--~~~D~e 655 (781)
. |.|+|...+ .+ .+|+ .+|+||+||.+|+||++++||||||+|||+|++||..++ .++.+|+ .++|++
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~e 720 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGD 720 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHH
Confidence 7 999997543 22 3334 579999999999999999999999999999999998654 3466674 448999
Q ss_pred HHHHHHHHHH----hCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 656 DFVARVKEAL----ANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 656 eLa~aI~~LL----~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
+++++|.+++ .|++.+.+| ...++|||+.++++++++..
T Consensus 721 aLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 721 EAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999987654 677777777 23368999999999998765
No 56
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.95 E-value=2.5e-27 Score=270.07 Aligned_cols=276 Identities=14% Similarity=-0.008 Sum_probs=194.1
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEE-EEEECCcHHHHHHhhcchhHHHHHHHHHH-HHHHhcCC
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVV-GVVHTNYLEYIKREKNGALQAFFVKHINN-WVTRAYCD 486 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV-~ivHt~y~~y~~~~~~~~~~~~l~k~l~r-~l~r~~aD 486 (781)
..+..++++.+|||||++..... .++ ...+...+ |++ ...|..+.....+ ....-+..+.. ......+|
T Consensus 270 ~~l~~~ir~~rpDIVHt~~~~a~-l~g--~laA~lagvpviv~~~h~~~~~~~~r-----~~~~e~~~~~~a~~i~~~sd 341 (578)
T PRK15490 270 KHLVPHLCERKLDYLSVWQDGAC-LMI--ALAALIAGVPRIQLGLRGLPPVVRKR-----LFKPEYEPLYQALAVVPGVD 341 (578)
T ss_pred HHHHHHHHHcCCCEEEEcCcccH-HHH--HHHHHhcCCCEEEEeecccCCcchhh-----HHHHHHHHhhhhceeEecch
Confidence 46888999999999999975431 121 22233334 664 4455522211100 00000111111 01011244
Q ss_pred EEEEcChhhhh-------c-CCCcEEeeCCCCCCCCCCCcch--hhHh--hhCcCCCCcEEEEEeeccCccCHHHHHHHH
Q 003992 487 KVLRLSAATQD-------L-PKSVICNVHGVNPKFLQIGEKV--ATDR--EQGQQAFSKGAYFLGKMVWAKGYRELIDLL 554 (781)
Q Consensus 487 ~VI~vS~~~k~-------l-~~kivvi~nGVD~~~f~p~~~~--~~r~--~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~ 554 (781)
+++.|..+++ . +.++.+|+||||+..|.+.... ..+. ..+++++.++++++||+.++||+..+++++
T Consensus 342 -~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~ 420 (578)
T PRK15490 342 -FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFA 420 (578)
T ss_pred -hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHH
Confidence 5667765544 1 2368899999998776653211 1222 223445567889999999999999999999
Q ss_pred HHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEE
Q 003992 555 AKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI 632 (781)
Q Consensus 555 ~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVV 632 (781)
.++.+..|+++|+|+|+|+..+++++.++++++. |.|+|+.++...+|+.+|+||+||.+||||++++||||||+|||
T Consensus 421 a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVV 500 (578)
T PRK15490 421 ARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVI 500 (578)
T ss_pred HHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEE
Confidence 9888888999999999999999999999999885 99999988888999999999999999999999999999999999
Q ss_pred EeCCCCccee-ecCCcccc--CCCHHHHHHHH---HHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 633 CADHPSNEFF-RSFPNCLT--YKTSEDFVARV---KEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 633 aSd~gg~g~L-~~~~ngv~--~~D~eeLa~aI---~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
+|++||+.++ .++.+|+. .+|++++++++ ..+..+...+..| ...++|||+.++++|+++|.
T Consensus 501 ATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 501 STPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred EeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 9999988654 45666643 47777777766 3333333333233 24578999999999999998
No 57
>PLN02275 transferase, transferring glycosyl groups
Probab=99.95 E-value=3.9e-26 Score=253.10 Aligned_cols=244 Identities=11% Similarity=0.006 Sum_probs=176.4
Q ss_pred cccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHH-hhcchhHHHHHHHHHHHHHHhcCCEEEEcCh
Q 003992 416 IPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR-EKNGALQAFFVKHINNWVTRAYCDKVLRLSA 493 (781)
Q Consensus 416 I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~-~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~ 493 (781)
++..+||+||+++|..+.....+...++..+ |++.++|+.+...... .........+...+++++.+ .+|.||++|+
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~ii~~S~ 174 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGK-MADGHLCVTK 174 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHh-hCCEEEECCH
Confidence 4568999999998765433222344444555 9998999753211110 01112223455666777776 7999999999
Q ss_pred hhhhcC-----CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhh----------
Q 003992 494 ATQDLP-----KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHK---------- 558 (781)
Q Consensus 494 ~~k~l~-----~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~---------- 558 (781)
.+++.. .++.+++||++ +.|.+..... ... .+...+++++||+.++||++.+++|+..+.
T Consensus 175 ~~~~~l~~~~g~~i~vi~n~~~-~~f~~~~~~~---~~~-~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~ 249 (371)
T PLN02275 175 AMQHELDQNWGIRATVLYDQPP-EFFRPASLEI---RLR-PNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES 249 (371)
T ss_pred HHHHHHHHhcCCCeEEECCCCH-HHcCcCCchh---ccc-CCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc
Confidence 876522 13567888854 4444322110 111 123456789999999999999999998874
Q ss_pred -------ccCCCcEEEEEeCCCCHHHHHHHHHhcCCc-EEEcC-CCCCHH--HHHhcccEEEEccC---CCCChHHHHHH
Q 003992 559 -------NDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQK-GRDHAD--DSLHGYKVFINPSI---SDVLCTATAEA 624 (781)
Q Consensus 559 -------~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~-V~FlG-~v~~~e--~ly~~ADVfVlPS~---~EgfGlviLEA 624 (781)
+..|+++|+|+|+|++++++++++++++++ +.|++ +++..+ .+|+.||+||+|+. .|++|++++||
T Consensus 250 ~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 250 DSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 235889999999999999999999999988 88765 566555 89999999998642 38999999999
Q ss_pred HHhCCcEEEeCCCCcceee-cCCccccCCCHHHHHHHHHHHH
Q 003992 625 LAMGKFVICADHPSNEFFR-SFPNCLTYKTSEDFVARVKEAL 665 (781)
Q Consensus 625 MA~G~PVVaSd~gg~g~L~-~~~ngv~~~D~eeLa~aI~~LL 665 (781)
||||+|||+++.|+..+++ ++.+|+...|+++++++|.+++
T Consensus 330 mA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 330 FGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 9999999999999886554 4667877778999999998874
No 58
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.95 E-value=1.5e-26 Score=259.97 Aligned_cols=347 Identities=13% Similarity=0.047 Sum_probs=210.4
Q ss_pred CEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcc---ccccccccCCchhhHHHHHHHHHhhCC
Q 003992 310 RNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQEL---VYPNVTFCSPEEQENYMRNWLEERVGF 386 (781)
Q Consensus 310 ~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~---v~p~i~f~~p~~qe~yir~~l~~rig~ 386 (781)
|||+.|.+.. -++|++.-.+..+..|.+.|+ +|.++.-.-....+.. .++......+. ...+. +-...|.
T Consensus 1 mkil~i~~~l--~~GGaeri~~~L~~~l~~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-- 73 (405)
T PRK10125 1 MNILQFNVRL--AEGGAAGVALDLHQRALQQGL-ASHFVYGYGKGGKESVSHQNYPQVIKHTPR-MTAMA-NIALFRL-- 73 (405)
T ss_pred CeEEEEEeee--cCCchhHHHHHHHHHHHhcCC-eEEEEEecCCCcccccccCCcceEEEeccc-HHHHH-HHHHHHh--
Confidence 7899887654 356777666778889999996 9998864311111100 01110000000 00110 0000000
Q ss_pred cccceeeccCCcccccccccCchHhHHhhc-ccCCCcEEEECCCchh--HHHHHHHHH-----HhhcC-CEEEEEECCcH
Q 003992 387 KADFKISFYPGKFSKERRSIIPAGDTSQFI-PSKDADIAILEEPEHL--NWYHHGKRW-----TDKFN-HVVGVVHTNYL 457 (781)
Q Consensus 387 ~~~~~i~~yP~~~~~~~~sil~v~~L~k~I-~~~kPDVIhl~~P~~l--~~~~~g~~~-----akk~~-pvV~ivHt~y~ 457 (781)
. ....+.....+.++| ++++|||||+|..... +... -..+ .+..+ |+|++.|+.+.
T Consensus 74 --------~------~~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~-l~~~~~~~~~~~~~~piV~TlHd~~~ 138 (405)
T PRK10125 74 --------F------NRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKS-VVRFCEKVKNHKPDVTLVWTLHDHWS 138 (405)
T ss_pred --------c------chhhcchHHHHHHHHhhccCCCEEEEecccCceecHHH-HHHHHhhhhcccCCCCEEEecccccc
Confidence 0 001112234456666 5899999999964321 1110 0111 12334 99999998663
Q ss_pred HH-----------HHH----------hhcc--hhHHHHHHHHHHHHHHh--cCCEEEEcChhhhhc------CCCcEEee
Q 003992 458 EY-----------IKR----------EKNG--ALQAFFVKHINNWVTRA--YCDKVLRLSAATQDL------PKSVICNV 506 (781)
Q Consensus 458 ~y-----------~~~----------~~~~--~~~~~l~k~l~r~l~r~--~aD~VI~vS~~~k~l------~~kivvi~ 506 (781)
-- .+. +... ....+.+..-.+.+... .++.+|++|+.+++. ..++.+|+
T Consensus 139 ~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~ 218 (405)
T PRK10125 139 VTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN 218 (405)
T ss_pred cCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeC
Confidence 20 000 1000 00111111111112211 368899999977652 24678999
Q ss_pred CCCCCCCCCCC-cchhhHhhhCcCCCCcEEEEEeec--cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHH
Q 003992 507 HGVNPKFLQIG-EKVATDREQGQQAFSKGAYFLGKM--VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAK 583 (781)
Q Consensus 507 nGVD~~~f~p~-~~~~~r~~~Gi~~~~~~ILfVGRL--~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~ 583 (781)
||||+..+.+. .....+ ..++.+.++++|+. .+.||++.|++|+.++. ++++|+|+|+|+...
T Consensus 219 NGid~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~~~L~ivG~g~~~~------- 284 (405)
T PRK10125 219 NGIDMATEAILAELPPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---DKIELHTFGKFSPFT------- 284 (405)
T ss_pred CCcCcccccccccccccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---CCeEEEEEcCCCccc-------
Confidence 99996432211 111111 12356789999994 36899999999999873 479999999986421
Q ss_pred hcCCcEEEcCCCCCHH---HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecCCcc--ccCCCHHHHH
Q 003992 584 RLDLNLNFQKGRDHAD---DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNC--LTYKTSEDFV 658 (781)
Q Consensus 584 ~lgL~V~FlG~v~~~e---~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ng--v~~~D~eeLa 658 (781)
.-.|.++|+..+.. ++|+.||+||+||..|+||++++||||||+|||+|++||..+++...+| ++++|+++|+
T Consensus 285 --~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~~G~lv~~~d~~~La 362 (405)
T PRK10125 285 --AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKSGGKTVSEEEVLQLA 362 (405)
T ss_pred --ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCCcEEEECCCCHHHHH
Confidence 12388889876543 7899999999999999999999999999999999999999777765566 4459999999
Q ss_pred HHHHHHHhCCCCCC-----ChHHHHcCCHHHHHHHHHHHhh
Q 003992 659 ARVKEALANDPQPL-----TPEQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 659 ~aI~~LL~d~~~r~-----~m~~~~~fSWe~iaerll~~Ye 694 (781)
+.+...+.+..... +....+.|||+.++++++++|+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 363 QLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred hccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 87654333221110 1134578999999999999997
No 59
>PLN02949 transferase, transferring glycosyl groups
Probab=99.95 E-value=7.5e-26 Score=258.04 Aligned_cols=209 Identities=17% Similarity=0.148 Sum_probs=167.7
Q ss_pred cCCEEEEcChhhhhc-------CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHH
Q 003992 484 YCDKVLRLSAATQDL-------PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAK 556 (781)
Q Consensus 484 ~aD~VI~vS~~~k~l-------~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~ 556 (781)
.+|.|+++|+.+++. +.++.+++||+|...+...... ...+.+.++++||+.++||++.+|+|+.+
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~-------~~~~~~~il~vGR~~~~Kg~~llI~A~~~ 292 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLE-------RSEDPPYIISVAQFRPEKAHALQLEAFAL 292 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCcc-------ccCCCCEEEEEEeeeccCCHHHHHHHHHH
Confidence 699999999987652 2356788999986544221100 01235689999999999999999999998
Q ss_pred hhc----cCCCcEEEEEeCCCC------HHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHH
Q 003992 557 HKN----DLDGFKLDVFGNGED------AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATA 622 (781)
Q Consensus 557 L~~----~~p~i~LvIVG~Gp~------~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviL 622 (781)
+.+ ..++++|+|+|+|+. .++|+++++++++. |.|+|.++..+ .+|+.||++++||..|+||++++
T Consensus 293 l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvl 372 (463)
T PLN02949 293 ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVV 372 (463)
T ss_pred HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHH
Confidence 764 347899999999853 25788889988887 99999998766 89999999999999999999999
Q ss_pred HHHHhCCcEEEeCCCCc--ceeec---CCccccCCCHHHHHHHHHHHHhC-CCCCCCh-----HHHHcCCHHHHHHHHHH
Q 003992 623 EALAMGKFVICADHPSN--EFFRS---FPNCLTYKTSEDFVARVKEALAN-DPQPLTP-----EQRYNLSWEAATQRFIE 691 (781)
Q Consensus 623 EAMA~G~PVVaSd~gg~--g~L~~---~~ngv~~~D~eeLa~aI~~LL~d-~~~r~~m-----~~~~~fSWe~iaerll~ 691 (781)
||||||+|||+++.||. ..+.. +.+|+..+|+++++++|.+++++ ++.+.+| +.+.+|||+.+++++.+
T Consensus 373 EAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 373 EYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HHHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999875 23332 45677778999999999999985 4555556 34578999999999999
Q ss_pred Hhhhcccccc
Q 003992 692 YSELNRILNN 701 (781)
Q Consensus 692 ~Ye~~~vl~~ 701 (781)
+|+ +++++
T Consensus 453 ~i~--~l~~~ 460 (463)
T PLN02949 453 AIR--PILNS 460 (463)
T ss_pred HHH--HHHhh
Confidence 998 76653
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.95 E-value=5.9e-26 Score=254.87 Aligned_cols=254 Identities=16% Similarity=0.117 Sum_probs=188.2
Q ss_pred cCCCcEEEECCCchhHHHHHHHHHHhhcC-C-EEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhh
Q 003992 418 SKDADIAILEEPEHLNWYHHGKRWTDKFN-H-VVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT 495 (781)
Q Consensus 418 ~~kPDVIhl~~P~~l~~~~~g~~~akk~~-p-vV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~ 495 (781)
+.++|++|.+.....+... ..+.+++. + +|.+.|... .+...... .+..+.+++.+ .+|.|+++|+..
T Consensus 125 ~~~~~v~~sy~~~~~~~~~--~~l~~~~~~~~~i~~~Hg~d-~~~~~~~~------~~~~~~~~~~~-~~d~ii~~S~~~ 194 (407)
T cd04946 125 DGQGTVFYSYWLHETAYAL--ALLKKEYLRKRVISRAHGYD-LYEDRYPS------GYIPLRRYLLS-SLDAVFPCSEQG 194 (407)
T ss_pred ccCceEEEEecCchHHHHH--HHHHHhcCCceEEEEeccch-hhhhhccc------cchHHHHHHHh-cCCEEEECCHHH
Confidence 4667888876544333222 23444444 3 888888532 12111110 11223333444 699999999976
Q ss_pred hhc-----C---CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCC--CcE
Q 003992 496 QDL-----P---KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLD--GFK 565 (781)
Q Consensus 496 k~l-----~---~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p--~i~ 565 (781)
++. + .++.+++||++...+.+.. ...+.+.++|+|++.+.||++.+++++.++.+..| +++
T Consensus 195 ~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~ 265 (407)
T cd04946 195 RNYLQKRYPAYKEKIKVSYLGVSDPGIISKP---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIK 265 (407)
T ss_pred HHHHHHHCCCccccEEEEECCcccccccCCC---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEE
Confidence 652 2 3567889999865443211 11246789999999999999999999999988776 467
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhc--ccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc
Q 003992 566 LDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHG--YKVFINPSISDVLCTATAEALAMGKFVICADHPSN 639 (781)
Q Consensus 566 LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~--ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~ 639 (781)
++++|+|++.+.+++++++.+.+ |.|+|++++.+ .+|+. +|+|++||.+||+|++++||||||+|||+|++||.
T Consensus 266 ~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 266 WTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred EEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 78899999999999999876665 99999999877 77864 78999999999999999999999999999999998
Q ss_pred ceeec-CCccccC---CCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHH
Q 003992 640 EFFRS-FPNCLTY---KTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFI 690 (781)
Q Consensus 640 g~L~~-~~ngv~~---~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll 690 (781)
.+++. +.+|+.. +|+++++++|.++++|++.+.+| ...++|+|+...++|+
T Consensus 346 ~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 346 PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 76555 4466433 48999999999999999888877 2457899999988875
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.95 E-value=8.9e-26 Score=245.91 Aligned_cols=251 Identities=15% Similarity=0.113 Sum_probs=180.5
Q ss_pred HHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCc-------HHHHHHhhcch--hHHHHH---HHHHH
Q 003992 412 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNY-------LEYIKREKNGA--LQAFFV---KHINN 478 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y-------~~y~~~~~~~~--~~~~l~---k~l~r 478 (781)
+.+.+...++|+||++++.... . .....+ +.+..+|+.. ..+........ ....+. +..++
T Consensus 75 ~~~~~~~~~~D~v~~~~~~~~~-~-----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (351)
T cd03804 75 AIEQFDLSGYDLVISSSHAVAK-G-----VITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDR 148 (351)
T ss_pred HHHhccccCCCEEEEcCcHHhc-c-----ccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHH
Confidence 3445666789999987653221 1 112233 7788888632 12221111100 001122 22223
Q ss_pred HHHHhcCCEEEEcChhhhhc-----CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHH
Q 003992 479 WVTRAYCDKVLRLSAATQDL-----PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDL 553 (781)
Q Consensus 479 ~l~r~~aD~VI~vS~~~k~l-----~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA 553 (781)
...+ ++|.++++|+.+++. ..+..+++||+|.+.+.+.. ...+.++|+|++.+.||++.+++|
T Consensus 149 ~~~~-~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~-----------~~~~~il~~G~~~~~K~~~~li~a 216 (351)
T cd03804 149 RSAA-RVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE-----------EKEDYYLSVGRLVPYKRIDLAIEA 216 (351)
T ss_pred HHhc-CCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------CCCCEEEEEEcCccccChHHHHHH
Confidence 3333 699999999987652 34567889999987765422 124578999999999999999999
Q ss_pred HHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcE
Q 003992 554 LAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFV 631 (781)
Q Consensus 554 ~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PV 631 (781)
+.++ + ++|+|+|+|+..+.+++ ...-+|.|+|++++.+ .+|+.||++++||. |+||++++||||||+||
T Consensus 217 ~~~~----~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pv 287 (351)
T cd03804 217 FNKL----G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPV 287 (351)
T ss_pred HHHC----C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCE
Confidence 9876 3 78999999998877776 2233499999999865 89999999999999 99999999999999999
Q ss_pred EEeCCCCcceeec-CCccc--cCCCHHHHHHHHHHHHhCCC-CCCCh-HHHHcCCHHHHHHHH
Q 003992 632 ICADHPSNEFFRS-FPNCL--TYKTSEDFVARVKEALANDP-QPLTP-EQRYNLSWEAATQRF 689 (781)
Q Consensus 632 VaSd~gg~g~L~~-~~ngv--~~~D~eeLa~aI~~LL~d~~-~r~~m-~~~~~fSWe~iaerl 689 (781)
|+++.|+...++. +.+|+ ..+|+++++++|.++++|++ .+..+ +.+.+|+|+...+++
T Consensus 288 i~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 288 IAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred EEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHHHhcCHHHHHHHh
Confidence 9999988866544 45553 44899999999999999984 44444 556789999988775
No 62
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.94 E-value=4e-26 Score=257.42 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=186.9
Q ss_pred cccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcH----HHHHHh--hc------------c--hhHHHHH-
Q 003992 416 IPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL----EYIKRE--KN------------G--ALQAFFV- 473 (781)
Q Consensus 416 I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~----~y~~~~--~~------------~--~~~~~l~- 473 (781)
+...+|||++.+.+....+.. ..+. .+ |++..+| |+ +....- ++ . .....++
T Consensus 103 ~~~~~pDv~i~~~g~~~~~~~--~~~~--~~~~~i~y~h--~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~ 176 (419)
T cd03806 103 LLKLVPDIFIDTMGYPFTYPL--VRLL--GGCPVGAYVH--YPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYY 176 (419)
T ss_pred HHhcCCCEEEEcCCcccHHHH--HHHh--cCCeEEEEec--CCcchHHHHHHHhhccccccCccchhccchHHHHHHHHH
Confidence 334689999888765554433 2221 14 8888888 54 222111 11 0 0111111
Q ss_pred ---HHHHHHHHHhcCCEEEEcChhhhh-----cCC--CcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccC
Q 003992 474 ---KHINNWVTRAYCDKVLRLSAATQD-----LPK--SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVW 543 (781)
Q Consensus 474 ---k~l~r~l~r~~aD~VI~vS~~~k~-----l~~--kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~ 543 (781)
..++++..+ .||.|+++|+.+++ ... ++.+++||+|.+.+.+... ......+.++|+||+.+
T Consensus 177 ~~~~~~~~~~~~-~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~-------~~~~~~~~il~vgr~~~ 248 (419)
T cd03806 177 RLFAFLYGLAGS-FADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPL-------DEKTRENQILSIAQFRP 248 (419)
T ss_pred HHHHHHHHHHhh-cCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccc-------ccccCCcEEEEEEeecC
Confidence 123444444 69999999997765 222 6789999999765543221 01224578999999999
Q ss_pred ccCHHHHHHHHHHhhccCC-----CcEEEEEeCCCC------HHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEE
Q 003992 544 AKGYRELIDLLAKHKNDLD-----GFKLDVFGNGED------AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVF 608 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p-----~i~LvIVG~Gp~------~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVf 608 (781)
+||++.+++|+.++.+..| +++|+|+|+|+. .++|+++++++++. |.|+|.++..+ .+|+.||++
T Consensus 249 ~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~ 328 (419)
T cd03806 249 EKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIG 328 (419)
T ss_pred CCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEE
Confidence 9999999999999987765 499999998753 36788888888885 99999988776 999999999
Q ss_pred EEccCCCCChHHHHHHHHhCCcEEEeCCCCc-ceee----cCCccccCCCHHHHHHHHHHHHhCCCCCCC-h-----HHH
Q 003992 609 INPSISDVLCTATAEALAMGKFVICADHPSN-EFFR----SFPNCLTYKTSEDFVARVKEALANDPQPLT-P-----EQR 677 (781)
Q Consensus 609 VlPS~~EgfGlviLEAMA~G~PVVaSd~gg~-g~L~----~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~-m-----~~~ 677 (781)
++||..|+||++++||||||+|||+++.||. ..++ ++.+|+...|+++++++|.+++++++.... + ...
T Consensus 329 v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~ 408 (419)
T cd03806 329 LHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSV 408 (419)
T ss_pred EECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764 3344 477887778999999999999997654332 3 345
Q ss_pred HcCCHHHHH
Q 003992 678 YNLSWEAAT 686 (781)
Q Consensus 678 ~~fSWe~ia 686 (781)
++|||+...
T Consensus 409 ~~fs~~~f~ 417 (419)
T cd03806 409 KRFSDEEFE 417 (419)
T ss_pred HhhCHHHhc
Confidence 678888764
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.94 E-value=6.2e-26 Score=248.81 Aligned_cols=257 Identities=17% Similarity=0.153 Sum_probs=191.0
Q ss_pred cCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhh
Q 003992 418 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQ 496 (781)
Q Consensus 418 ~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k 496 (781)
..++|+++++.+....+.. ...... +.+.++|+.............++. .++.+...+. .+|.||++|+..+
T Consensus 97 ~~~~diii~~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~d~ii~~s~~~~ 169 (372)
T cd04949 97 DTKPDVFILDRPTLDGQAL----LNMKKAAKVVVVLHSNHVSDNNDPVHSLINN-FYEYVFENLD--KVDGVIVATEQQK 169 (372)
T ss_pred CCCCCEEEECCccccchhH----HhccCCceEEEEEChHHhCCcccccccccch-hhHHHHhChh--hCCEEEEccHHHH
Confidence 4789999999877655422 122222 678888864322111000111111 1122212222 4899999999765
Q ss_pred h-----cC--CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEE
Q 003992 497 D-----LP--KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVF 569 (781)
Q Consensus 497 ~-----l~--~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIV 569 (781)
+ +. .++.+++||++...+.+... .......++++||+.++||++.+++++.++.++.|+++|+|+
T Consensus 170 ~~l~~~~~~~~~v~~ip~g~~~~~~~~~~~--------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~ 241 (372)
T cd04949 170 QDLQKQFGNYNPIYTIPVGSIDPLKLPAQF--------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIY 241 (372)
T ss_pred HHHHHHhCCCCceEEEcccccChhhcccch--------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4 11 23678999999766544210 112356789999999999999999999999998999999999
Q ss_pred eCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC-Cc-ceeecC
Q 003992 570 GNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP-SN-EFFRSF 645 (781)
Q Consensus 570 G~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g-g~-g~L~~~ 645 (781)
|.|+....++..++++++. |.|.|+.++...+|+.||++|+||..||||++++||||||+|||+++.+ +. .++.++
T Consensus 242 G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~ 321 (372)
T cd04949 242 GYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDG 321 (372)
T ss_pred EeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccC
Confidence 9999998888888888776 9999988888899999999999999999999999999999999999986 44 344456
Q ss_pred CccccC--CCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHH
Q 003992 646 PNCLTY--KTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRF 689 (781)
Q Consensus 646 ~ngv~~--~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerl 689 (781)
.+|+.. +|+++|+++|..+++|+..+.+| +..++|||+.+++++
T Consensus 322 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 322 ENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 666544 69999999999999998777766 346789999988763
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.92 E-value=2.5e-24 Score=235.92 Aligned_cols=221 Identities=17% Similarity=0.145 Sum_probs=161.9
Q ss_pred cC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc--------CCCcEEeeCCCCCCCCC
Q 003992 445 FN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDL--------PKSVICNVHGVNPKFLQ 515 (781)
Q Consensus 445 ~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l--------~~kivvi~nGVD~~~f~ 515 (781)
.+ |++.++|..+ .+...+..+.....+|.||++|+.+++. .+++.+++||||++.|.
T Consensus 68 ~~~~~v~e~~~~~--------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~ 133 (331)
T PHA01630 68 VGKNIVFEVADTD--------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFE 133 (331)
T ss_pred cCCceEEEEEeec--------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcC
Confidence 45 8888888732 1122333444222699999999977652 23678899999988775
Q ss_pred CCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCC
Q 003992 516 IGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGR 595 (781)
Q Consensus 516 p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v 595 (781)
+.... .....+++++|++.++||++.|++|++++.++.++++++|+|+|+....+. ++. .+.|.+
T Consensus 134 ~~~~~--------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~------~~~-~~~~~v 198 (331)
T PHA01630 134 YKPKE--------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLF------GLN-GVKTPL 198 (331)
T ss_pred CCccc--------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhc------ccc-ceeccC
Confidence 53211 113445667788999999999999999998888899999999876543321 221 234456
Q ss_pred CCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCccee-ecCCcc--------------------cc-C
Q 003992 596 DHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFF-RSFPNC--------------------LT-Y 651 (781)
Q Consensus 596 ~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L-~~~~ng--------------------v~-~ 651 (781)
++.+ .+|+.||+||+||..|+||++++||||||+|||+|+.||..++ .++.|| +. .
T Consensus 199 ~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~ 278 (331)
T PHA01630 199 PDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLD 278 (331)
T ss_pred CHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccC
Confidence 6554 8999999999999999999999999999999999999986443 333332 22 2
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 652 KTSEDFVARVKEALAND--PQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 652 ~D~eeLa~aI~~LL~d~--~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
.|.+++++++.+++.|+ +..+.+ ...++|||+.++++++++|+
T Consensus 279 ~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 279 PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 57888999999999875 332222 35789999999999999997
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.92 E-value=3.1e-23 Score=226.79 Aligned_cols=220 Identities=15% Similarity=0.116 Sum_probs=159.8
Q ss_pred CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhcC-----CCcEEeeCCCCCCCCCCCcc--
Q 003992 447 HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDLP-----KSVICNVHGVNPKFLQIGEK-- 519 (781)
Q Consensus 447 pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l~-----~kivvi~nGVD~~~f~p~~~-- 519 (781)
+.+.++|.-|.. ...++++.+ .+.+|++|+.+++.. ...++++||||.+.|.+...
T Consensus 72 ~~~tt~~g~~~~---------------~~y~~~m~~--~~~vIavS~~t~~~L~~~G~~~~i~I~~GVD~~~f~p~~~~~ 134 (335)
T PHA01633 72 YFYTTCDGIPNI---------------EIVNKYLLQ--DVKFIPNSKFSAENLQEVGLQVDLPVFHGINFKIVENAEKLV 134 (335)
T ss_pred ceEEeeCCcCch---------------HHHHHHHhc--CCEEEeCCHHHHHHHHHhCCCCceeeeCCCChhhcCccchhh
Confidence 889999876521 233455555 568999999776621 12245789999887766432
Q ss_pred hhhHhhhCcC-CCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC----cEEEEEeCCCCHHHHHHHHHhcCCc--EEEc
Q 003992 520 VATDREQGQQ-AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGNGEDAYEVQSAAKRLDLN--LNFQ 592 (781)
Q Consensus 520 ~~~r~~~Gi~-~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~----i~LvIVG~Gp~~~~L~~~a~~lgL~--V~Fl 592 (781)
...+++++.. ++.+.++++||+.++||++.|++|+.++.++.|+ ++++++|++ ..+++++. |.|+
T Consensus 135 ~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~--------~~~~l~l~~~V~f~ 206 (335)
T PHA01633 135 PQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK--------QFTQLEVPANVHFV 206 (335)
T ss_pred HHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH--------HHHHcCCCCcEEEE
Confidence 2334445432 4567889999999999999999999999877765 578888732 12334443 8888
Q ss_pred C---CCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecC-----------------Cc--c
Q 003992 593 K---GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSF-----------------PN--C 648 (781)
Q Consensus 593 G---~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~-----------------~n--g 648 (781)
| .++..+ ++|+.||+||+||..|+||++++||||||+|||++++|+..++.++ .+ |
T Consensus 207 g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g 286 (335)
T PHA01633 207 AEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQK 286 (335)
T ss_pred ecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCce
Confidence 5 444443 8999999999999999999999999999999999999876554331 11 2
Q ss_pred cc--CCCHHHHHHHHHHHHhCCCC-CCCh---HHHHcCCHHHHHHHHHH
Q 003992 649 LT--YKTSEDFVARVKEALANDPQ-PLTP---EQRYNLSWEAATQRFIE 691 (781)
Q Consensus 649 v~--~~D~eeLa~aI~~LL~d~~~-r~~m---~~~~~fSWe~iaerll~ 691 (781)
+. ..|+++|+++|..++...+. .+.+ +.+++|+|+.+.+++++
T Consensus 287 ~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 287 WKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 22 37999999999999655322 1122 67899999999998863
No 66
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=2.9e-22 Score=222.01 Aligned_cols=255 Identities=14% Similarity=0.099 Sum_probs=177.3
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++++++||+||++.|..... . .+.+...+ |++. ++++|.. ...|+.+ .+|.+
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~-~--~~~~~~~~ip~~~-~~td~~~-----------------~~~~~~~-~ad~i 151 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVP-E--LKKQTGISIPTYN-VLTDFCL-----------------HKIWVHR-EVDRY 151 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHH-H--HHHhcCCCCCeEE-EeCCCCC-----------------CcccccC-CCCEE
Confidence 5688999999999999987754321 1 22333344 7664 4444311 0123334 69999
Q ss_pred EEcChhhhhc------C-CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEE-EEEeeccCccCHHHHHHHHHHhhcc
Q 003992 489 LRLSAATQDL------P-KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGKMVWAKGYRELIDLLAKHKND 560 (781)
Q Consensus 489 I~vS~~~k~l------~-~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~I-LfVGRL~~~KGid~LLeA~~~L~~~ 560 (781)
+++|+.+++. + .++.++.+.++..+.........+.+++++++.+++ ++.|++...|++..+++++.+
T Consensus 152 ~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~---- 227 (380)
T PRK13609 152 FVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMS---- 227 (380)
T ss_pred EECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhh----
Confidence 9999977652 1 134444344444443332333456678887666654 566888889999999998864
Q ss_pred CCCcEEEEEeC-C-CCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeC-CC
Q 003992 561 LDGFKLDVFGN-G-EDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD-HP 637 (781)
Q Consensus 561 ~p~i~LvIVG~-G-p~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd-~g 637 (781)
.++++++++|+ + +..+.+++.++.++.+|.|+|++++..++|+.||++|. ++.|++++||||||+|||+++ .+
T Consensus 228 ~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~ 303 (380)
T PRK13609 228 VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPVP 303 (380)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCCC
Confidence 26789888754 3 34577887777666459999999887789999999984 556999999999999999986 45
Q ss_pred Ccc-----eeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHHHHhh
Q 003992 638 SNE-----FFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 638 g~g-----~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll~~Ye 694 (781)
+.. ++...+.++...|+++++++|.++++|++.+.+| .....++++.+++.+++.++
T Consensus 304 g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 304 GQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred CcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 421 2211222355589999999999999998877777 23356899999999998887
No 67
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.88 E-value=1.6e-21 Score=222.86 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=146.6
Q ss_pred HHHHHHHhcCCEEEEcChhhhh----c-CC-CcEEeeCCCCCCCCCCCcc-----------------hhhHhhhCcCCCC
Q 003992 476 INNWVTRAYCDKVLRLSAATQD----L-PK-SVICNVHGVNPKFLQIGEK-----------------VATDREQGQQAFS 532 (781)
Q Consensus 476 l~r~l~r~~aD~VI~vS~~~k~----l-~~-kivvi~nGVD~~~f~p~~~-----------------~~~r~~~Gi~~~~ 532 (781)
++++... .||.++++|+.+++ + .. .-.++|||+|+.+|.+... ...+.++++++++
T Consensus 219 iE~~aa~-~Ad~fttVS~it~~E~~~Ll~~~pd~ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 219 IERAAAH-CAHVFTTVSEITAYEAEHLLKRKPDVVLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HHHHHHh-hCCEEEECChHHHHHHHHHhCCCCCEEeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 5666665 79999999997765 2 11 1249999999888755421 1123445666677
Q ss_pred cEEEE-EeeccC-ccCHHHHHHHHHHhhcc----CCC---cEEEEEeCCCC------------HHHH-------------
Q 003992 533 KGAYF-LGKMVW-AKGYRELIDLLAKHKND----LDG---FKLDVFGNGED------------AYEV------------- 578 (781)
Q Consensus 533 ~~ILf-VGRL~~-~KGid~LLeA~~~L~~~----~p~---i~LvIVG~Gp~------------~~~L------------- 578 (781)
++++| +||+.. +||++.||+|+.+|... ..+ +-|+|+-.+.. ...|
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77777 799998 99999999999998752 222 33444432211 0011
Q ss_pred ------------------------------------------------------HHHHHhcCC--------cEEEcCC-C
Q 003992 579 ------------------------------------------------------QSAAKRLDL--------NLNFQKG-R 595 (781)
Q Consensus 579 ------------------------------------------------------~~~a~~lgL--------~V~FlG~-v 595 (781)
....++.++ .|+|++. .
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 111112112 1566442 1
Q ss_pred ---C-----CHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcc----eeec-C-Ccc--cc-------CC
Q 003992 596 ---D-----HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE----FFRS-F-PNC--LT-------YK 652 (781)
Q Consensus 596 ---~-----~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g----~L~~-~-~ng--v~-------~~ 652 (781)
+ ..+++|+.||+||+||.+|+||++++||||||+|||+|+.+|.+ .+.. + ..| +. ..
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e 537 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDE 537 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHH
Confidence 1 13389999999999999999999999999999999999998773 2221 1 122 22 24
Q ss_pred CHHHHHHHHHHHHhCCCCCCCh-------HHHHcCCHHHHHHHHHHHhh
Q 003992 653 TSEDFVARVKEALANDPQPLTP-------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 653 D~eeLa~aI~~LL~d~~~r~~m-------~~~~~fSWe~iaerll~~Ye 694 (781)
+.++++++|.++++. +.++.+ ..+..|+|+..++.|+++|+
T Consensus 538 ~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~ 585 (590)
T cd03793 538 SVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQ 585 (590)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 678899999998844 444444 34577999999999999998
No 68
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=1.6e-22 Score=230.83 Aligned_cols=261 Identities=9% Similarity=0.039 Sum_probs=172.6
Q ss_pred CCcEEEECCCchhHHHHHHHHHHhhc-C-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcCh-hhh
Q 003992 420 DADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSA-ATQ 496 (781)
Q Consensus 420 kPDVIhl~~P~~l~~~~~g~~~akk~-~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~-~~k 496 (781)
..|+|++|++..+. .+ ..+.++. . +++..+|+.++.+...... +....+. +.+. .||.|...+. .++
T Consensus 131 ~~d~iwihDyhl~l-lp--~~lr~~~~~~~i~~f~HipfP~~e~~~~l-p~~~~ll----~~~l--~~D~igF~t~~~~~ 200 (460)
T cd03788 131 PGDLVWVHDYHLLL-LP--QMLRERGPDARIGFFLHIPFPSSEIFRCL-PWREELL----RGLL--GADLIGFQTERYAR 200 (460)
T ss_pred CCCEEEEeChhhhH-HH--HHHHhhCCCCeEEEEEeCCCCChHHHhhC-CChHHHH----HHHh--cCCEEEECCHHHHH
Confidence 57999999985432 22 2222322 3 8889999988665422111 1111111 1111 1444444443 111
Q ss_pred h--------------------cC---CCcEEeeCCCCCCCCCCCcch-----hhHhhhCcCCCCcEEEEEeeccCccCHH
Q 003992 497 D--------------------LP---KSVICNVHGVNPKFLQIGEKV-----ATDREQGQQAFSKGAYFLGKMVWAKGYR 548 (781)
Q Consensus 497 ~--------------------l~---~kivvi~nGVD~~~f~p~~~~-----~~r~~~Gi~~~~~~ILfVGRL~~~KGid 548 (781)
. +. .++.+++||||++.|.+.... ..+...+..++.++++++||+.+.||++
T Consensus 201 ~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~ 280 (460)
T cd03788 201 NFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIP 280 (460)
T ss_pred HHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHH
Confidence 1 01 135788999998776543211 1112234455778999999999999999
Q ss_pred HHHHHHHHhhccCCC----cEEEEEeCC-----CCHHHHHHHHH----hc----C---Cc-EEE-cCCCCCHH--HHHhc
Q 003992 549 ELIDLLAKHKNDLDG----FKLDVFGNG-----EDAYEVQSAAK----RL----D---LN-LNF-QKGRDHAD--DSLHG 604 (781)
Q Consensus 549 ~LLeA~~~L~~~~p~----i~LvIVG~G-----p~~~~L~~~a~----~l----g---L~-V~F-lG~v~~~e--~ly~~ 604 (781)
.+++|+.++.+++|+ ++|+++|.+ +....+++.++ +. + .. |.| .|.++..+ ++|+.
T Consensus 281 ~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 281 ERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 999999999888776 678888643 33334443333 22 2 22 554 46666665 99999
Q ss_pred ccEEEEccCCCCChHHHHHHHHhCCc----EEEeCCCCcceeecCCcc--ccCCCHHHHHHHHHHHHhCCC-CCCCh---
Q 003992 605 YKVFINPSISDVLCTATAEALAMGKF----VICADHPSNEFFRSFPNC--LTYKTSEDFVARVKEALANDP-QPLTP--- 674 (781)
Q Consensus 605 ADVfVlPS~~EgfGlviLEAMA~G~P----VVaSd~gg~g~L~~~~ng--v~~~D~eeLa~aI~~LL~d~~-~r~~m--- 674 (781)
||+||+||..||||++++||||||+| ||+|+.+|.... ..+| +.+.|+++++++|.++++++. ++..+
T Consensus 361 aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~--~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~ 438 (460)
T cd03788 361 ADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE--LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRK 438 (460)
T ss_pred ccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh--cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999 999987765433 2333 456899999999999999774 33333
Q ss_pred --HHHHcCCHHHHHHHHHHH
Q 003992 675 --EQRYNLSWEAATQRFIEY 692 (781)
Q Consensus 675 --~~~~~fSWe~iaerll~~ 692 (781)
+...+|+|+..++++++.
T Consensus 439 ~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 439 LREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHhCCHHHHHHHHHHh
Confidence 456789999999998864
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.87 E-value=6e-21 Score=214.86 Aligned_cols=270 Identities=14% Similarity=0.050 Sum_probs=180.7
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.++++.++||++|+++.+. |.. ....+++.+ |++.+.|.........+ . .+..+.+++.+ .+|.|
T Consensus 114 ~~~~~~l~~~~Pd~v~~~~~~~--~~~-~l~~~~~~~ip~vl~~~~~~~~s~~~~------~-~~~~~~r~~~~-~~d~i 182 (425)
T PRK05749 114 GAVRRFLRFWRPKLVIIMETEL--WPN-LIAELKRRGIPLVLANARLSERSFKRY------Q-KFKRFYRLLFK-NIDLV 182 (425)
T ss_pred HHHHHHHHhhCCCEEEEEecch--hHH-HHHHHHHCCCCEEEEeccCChhhHHHH------H-HHHHHHHHHHH-hCCEE
Confidence 3577889999999999886543 221 123445556 88766554332111111 1 12233444444 58999
Q ss_pred EEcChhhhhc------CCCcEEeeCC-CCCCCCCCC--cchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhc
Q 003992 489 LRLSAATQDL------PKSVICNVHG-VNPKFLQIG--EKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN 559 (781)
Q Consensus 489 I~vS~~~k~l------~~kivvi~nG-VD~~~f~p~--~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~ 559 (781)
+++|+..++. +..+.+++|+ +|....... .....+..++ ++.++++++|+ ..|+.+.|++|+.++.+
T Consensus 183 i~~S~~~~~~l~~~g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~ 258 (425)
T PRK05749 183 LAQSEEDAERFLALGAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLK 258 (425)
T ss_pred EECCHHHHHHHHHcCCCCCcEecccccccCCCChhhHHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHH
Confidence 9999977662 1124455553 232211111 1122344444 35677888886 47889999999999888
Q ss_pred cCCCcEEEEEeCCCCH-HHHHHHHHhcCCc-EEEcCCC--------------CCHHHHHhcccEE-EEccCCCCChHHHH
Q 003992 560 DLDGFKLDVFGNGEDA-YEVQSAAKRLDLN-LNFQKGR--------------DHADDSLHGYKVF-INPSISDVLCTATA 622 (781)
Q Consensus 560 ~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~-V~FlG~v--------------~~~e~ly~~ADVf-VlPS~~EgfGlviL 622 (781)
++|+++|+|+|+|+++ +++++.++++|+. +.|.|.. .+...+|+.||++ +.+|..|++|++++
T Consensus 259 ~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~l 338 (425)
T PRK05749 259 QFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPL 338 (425)
T ss_pred hCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHH
Confidence 7899999999999987 7899999998886 6666532 2334899999995 55788899999999
Q ss_pred HHHHhCCcEEEeCCCC-cceeec----CCccccCCCHHHHHHHHHHHHhCCCCCCChH-HHHcC--CHHHHHHHHHHHhh
Q 003992 623 EALAMGKFVICADHPS-NEFFRS----FPNCLTYKTSEDFVARVKEALANDPQPLTPE-QRYNL--SWEAATQRFIEYSE 694 (781)
Q Consensus 623 EAMA~G~PVVaSd~gg-~g~L~~----~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~-~~~~f--SWe~iaerll~~Ye 694 (781)
||||||+|||+++..+ .+.+.. .+.++..+|+++|+++|.++++|++.+.+|. .+..+ +...+++++++.+.
T Consensus 339 EAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~ 418 (425)
T PRK05749 339 EPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLE 418 (425)
T ss_pred HHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 9999999999987643 333222 2223556999999999999999998888882 11111 12477788888887
No 70
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=4.4e-21 Score=210.40 Aligned_cols=252 Identities=13% Similarity=0.040 Sum_probs=175.1
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++++++|||||++.+.. ++.. ...++..+ |++.+.|..+.. ..++++.+ .+|.+
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~-~~~~--~~~~~~~~~p~v~~~~~~~~~----------------~~~r~~~~-~~d~i 140 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYV-SGPG--GLAARLLGIPLVIHEQNAVPG----------------LANKLLAR-FAKKV 140 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcc-hhHH--HHHHHHcCCCEEEEcCCCCcc----------------HHHHHHHH-Hhchh
Confidence 4577888999999999997543 2332 33344445 887655532211 22445555 68999
Q ss_pred EEcChhhh--hcCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHH-HHHHHhhccCCCcE
Q 003992 489 LRLSAATQ--DLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELI-DLLAKHKNDLDGFK 565 (781)
Q Consensus 489 I~vS~~~k--~l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LL-eA~~~L~~~~p~i~ 565 (781)
++.++... .-..++.+++|||+.+.+.+.. .+.+++++++.++++++|+....|++..++ +|+.++.+. + ..
T Consensus 141 i~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~---~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~ 215 (357)
T PRK00726 141 ATAFPGAFPEFFKPKAVVTGNPVREEILALAA---PPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QV 215 (357)
T ss_pred eECchhhhhccCCCCEEEECCCCChHhhcccc---hhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EE
Confidence 99987442 1234788999999976654322 223455556678889999998888876665 999888654 4 56
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc------
Q 003992 566 LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------ 639 (781)
Q Consensus 566 LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~------ 639 (781)
++++|+|+. +.+.+..+ ++++|.|+|++++..++|+.||++|.+| .+++++|||+||+|||++..++.
T Consensus 216 ~~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 216 IHQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA----GASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred EEEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 788999975 44554556 7777999999977779999999999876 26899999999999999976421
Q ss_pred ---ceeecCCcc--ccCCC--HHHHHHHHHHHHhCCCCCCCh-HH----HHcCCHHHHHHHHHHH
Q 003992 640 ---EFFRSFPNC--LTYKT--SEDFVARVKEALANDPQPLTP-EQ----RYNLSWEAATQRFIEY 692 (781)
Q Consensus 640 ---g~L~~~~ng--v~~~D--~eeLa~aI~~LL~d~~~r~~m-~~----~~~fSWe~iaerll~~ 692 (781)
..+....++ +..+| +++++++|.++++|++.+..| +. ...++-+.+++.+++.
T Consensus 290 ~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 290 ANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEEL 354 (357)
T ss_pred HHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 123333344 33355 999999999999999888777 22 3445555666555544
No 71
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=1.2e-20 Score=205.30 Aligned_cols=235 Identities=15% Similarity=0.109 Sum_probs=168.4
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++++.+||+||++.+.. ++.+ ...++..+ |++...|+.+.. ..++++.+ ++|.|
T Consensus 79 ~~~~~~i~~~~pDvI~~~~~~~-~~~~--~~~a~~~~~p~v~~~~~~~~~----------------~~~~~~~~-~~~~v 138 (350)
T cd03785 79 LQARKILKKFKPDVVVGFGGYV-SGPV--GLAAKLLGIPLVIHEQNAVPG----------------LANRLLAR-FADRV 138 (350)
T ss_pred HHHHHHHHhcCCCEEEECCCCc-chHH--HHHHHHhCCCEEEEcCCCCcc----------------HHHHHHHH-hhCEE
Confidence 3467788899999999987643 3322 34455556 777544432211 12344444 58999
Q ss_pred EEcChhhhhc--CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHH-HHHHHHHhhccCCCcE
Q 003992 489 LRLSAATQDL--PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRE-LIDLLAKHKNDLDGFK 565 (781)
Q Consensus 489 I~vS~~~k~l--~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~-LLeA~~~L~~~~p~i~ 565 (781)
+++|+..++. ..++.+++||+|..++.+... +..++++++.++++++|+....|+... +++++..+.+ ++++
T Consensus 139 i~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~ 213 (350)
T cd03785 139 ALSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQ 213 (350)
T ss_pred EEcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeE
Confidence 9999988764 457788999999876654221 556677777888888888777788765 4588888763 4555
Q ss_pred -EEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc-----
Q 003992 566 -LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----- 639 (781)
Q Consensus 566 -LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----- 639 (781)
++++|+| +.+.+++.+++++.+|.|.|++++..++|+.||++|.+|- +++++|||+||+|||+++.++.
T Consensus 214 ~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 214 VIHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred EEEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 4578888 6678888887664449999999777799999999998762 6899999999999999876541
Q ss_pred ----ceeecCCcccc--CC--CHHHHHHHHHHHHhCCCCCCCh
Q 003992 640 ----EFFRSFPNCLT--YK--TSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 640 ----g~L~~~~ngv~--~~--D~eeLa~aI~~LL~d~~~r~~m 674 (781)
..+....+|+. .+ |+++++++|..+++|++.+.+|
T Consensus 289 ~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~ 331 (350)
T cd03785 289 TANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAM 331 (350)
T ss_pred HHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 22333344433 33 8999999999999887766666
No 72
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.85 E-value=1.7e-20 Score=209.85 Aligned_cols=255 Identities=13% Similarity=0.125 Sum_probs=177.1
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++++++||+||++.|... +.. .+..+..+ |++ +++|++... ..|+.+ ++|.+
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~-~~~--l~~~~~~~iP~~-~v~td~~~~-----------------~~w~~~-~~d~~ 151 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPV-MSV--LTEQFNINIPVA-TVMTDYRLH-----------------KNWITP-YSTRY 151 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHH-HHH--HHHhcCCCCCEE-EEeCCCCcc-----------------cccccC-CCCEE
Confidence 56889999999999999877643 211 22333345 764 556765210 123333 69999
Q ss_pred EEcChhhhhcC-------CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEE-EEEeeccCccCHHHHHHHHHHhhcc
Q 003992 489 LRLSAATQDLP-------KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGKMVWAKGYRELIDLLAKHKND 560 (781)
Q Consensus 489 I~vS~~~k~l~-------~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~I-LfVGRL~~~KGid~LLeA~~~L~~~ 560 (781)
++.|+.+++.. .++.++.++|++.|..+.+....+.+++++++.+.+ ++.|++...||++.+++++.+ .
T Consensus 152 ~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~---~ 228 (391)
T PRK13608 152 YVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILA---K 228 (391)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHh---c
Confidence 99999876532 234555566666665443334455677887666654 578999989999999998632 3
Q ss_pred CCCcEEEEEeC-CCC-HHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCC-C
Q 003992 561 LDGFKLDVFGN-GED-AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADH-P 637 (781)
Q Consensus 561 ~p~i~LvIVG~-Gp~-~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~-g 637 (781)
.++++++++++ ++. .+.+++.... .-+|.|+|++++..++|+.||++|. ++.|++++||||||+|||+++. +
T Consensus 229 ~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~p 303 (391)
T PRK13608 229 SANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNPAP 303 (391)
T ss_pred CCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCC
Confidence 46788876643 321 2444443321 2249999999888899999999996 4579999999999999999963 4
Q ss_pred C----ccee-ecCCccccCCCHHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHHHHhh
Q 003992 638 S----NEFF-RSFPNCLTYKTSEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 638 g----~g~L-~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll~~Ye 694 (781)
+ |+.+ ...+.++..+|+++++++|.++++|++.+.+| +....++|+.+++.+++.++
T Consensus 304 gqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 304 GQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred CcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 3 2222 22333455689999999999999998877777 23457999999999999887
No 73
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.85 E-value=7.7e-20 Score=198.83 Aligned_cols=249 Identities=16% Similarity=0.102 Sum_probs=167.0
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++++.+||+||++.+... +.+ ...++..+ |++...+..+. ..+.+++.+ ++|.+
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~-~~~--~~~~~~~~~p~v~~~~~~~~----------------~~~~~~~~~-~~d~i 139 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVS-GPA--GLAAKLLGIPLFHHEQNAVP----------------GLTNKLLSR-FAKKV 139 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCccc-HHH--HHHHHHcCCCEEEECCCCCc----------------cHHHHHHHH-HhCee
Confidence 45778899999999999876432 222 23344445 77532221110 122455555 79999
Q ss_pred EEcChhhhhcCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHH-HHHHHHHhhccCCCcEEE
Q 003992 489 LRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRE-LIDLLAKHKNDLDGFKLD 567 (781)
Q Consensus 489 I~vS~~~k~l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~-LLeA~~~L~~~~p~i~Lv 567 (781)
+++|+.+++.. +..+++|||+..++.+.. .+..++++++.++++++|+....|++.. +++++..+.+. +++++
T Consensus 140 i~~~~~~~~~~-~~~~i~n~v~~~~~~~~~---~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~ 213 (348)
T TIGR01133 140 LISFPGAKDHF-EAVLVGNPVRQEIRSLPV---PRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIV 213 (348)
T ss_pred EECchhHhhcC-CceEEcCCcCHHHhcccc---hhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEE
Confidence 99999888765 347889999866554321 1234566667788999998888888765 55888888653 45554
Q ss_pred EEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc------
Q 003992 568 VFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------ 639 (781)
Q Consensus 568 IVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~------ 639 (781)
+++++...+.+++.++++++. +.|. .. +..++|+.||++|.+| | |++++|||++|+|||+++.++.
T Consensus 214 ~~~g~~~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 214 HQTGKNDLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred EECCcchHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 443333457888888888875 4555 22 5668999999999875 2 7899999999999999987541
Q ss_pred --ceeecCCcccc--CCC--HHHHHHHHHHHHhCCCCCCCh-HHHHcCCHHHHHHHHH
Q 003992 640 --EFFRSFPNCLT--YKT--SEDFVARVKEALANDPQPLTP-EQRYNLSWEAATQRFI 690 (781)
Q Consensus 640 --g~L~~~~ngv~--~~D--~eeLa~aI~~LL~d~~~r~~m-~~~~~fSWe~iaerll 690 (781)
.++....+|+. .+| +++++++|.++++|++.+.+| +....+.-+...++..
T Consensus 288 ~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (348)
T TIGR01133 288 NAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIA 345 (348)
T ss_pred HHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 13334444533 344 999999999999998777777 3334444334444433
No 74
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.85 E-value=3.2e-20 Score=205.90 Aligned_cols=256 Identities=16% Similarity=0.105 Sum_probs=171.8
Q ss_pred cCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhh
Q 003992 418 SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQ 496 (781)
Q Consensus 418 ~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k 496 (781)
+++..|++.+.|....+.. ...+ ++|+.+++.+..+.. . . .... ..++.+.+ .||.|+++|+.++
T Consensus 100 ~~~~~i~~~~~P~~~~~~~------~~~~~~~Vyd~~D~~~~~~~---~--~-~~~~-~~e~~~~~-~ad~vi~~S~~l~ 165 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAA------LLQASLVVYDCVDDLSAFPG---G--P-PELL-EAERRLLK-RADLVFTTSPSLY 165 (373)
T ss_pred CCCCcEEEEeCccHHHHHh------hcCCCeEEEEcccchhccCC---C--C-HHHH-HHHHHHHH-hCCEEEECCHHHH
Confidence 5566777777776554332 1223 777777776544321 1 0 1111 34555555 6999999999877
Q ss_pred hc----CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCC
Q 003992 497 DL----PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNG 572 (781)
Q Consensus 497 ~l----~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~G 572 (781)
+. ..++.+++||||.+.|.+........+.....+.+.++|+|++...++++.+.+++. ..|+++|+|+|+|
T Consensus 166 ~~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~la~----~~p~~~~vliG~~ 241 (373)
T cd04950 166 EAKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEALAK----ARPDWSFVLIGPV 241 (373)
T ss_pred HHHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHHHH----HCCCCEEEEECCC
Confidence 63 245788999999877755322111001111235689999999999888876655443 3589999999998
Q ss_pred CCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCC-----CCChHHHHHHHHhCCcEEEeCCCCcceeecC
Q 003992 573 EDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSIS-----DVLCTATAEALAMGKFVICADHPSNEFFRSF 645 (781)
Q Consensus 573 p~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~-----EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~ 645 (781)
+.......... .-+|+|+|.+++.+ .+|+.+|++++|+.. +++|++++||||||+|||+|+.+...... +
T Consensus 242 ~~~~~~~~~~~--~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~~-~ 318 (373)
T cd04950 242 DVSIDPSALLR--LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRYE-D 318 (373)
T ss_pred cCccChhHhcc--CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhhc-C
Confidence 43322222111 12399999998776 999999999999863 46899999999999999999877543221 1
Q ss_pred CccccCCCHHHHHHHHHHHHhCCCCCCCh---HHHHcCCHHHHHHHHHHHhh
Q 003992 646 PNCLTYKTSEDFVARVKEALANDPQPLTP---EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 646 ~ngv~~~D~eeLa~aI~~LL~d~~~r~~m---~~~~~fSWe~iaerll~~Ye 694 (781)
..++..+|+++++++|.+++.++...... ..+..+||++.++++++...
T Consensus 319 ~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 319 EVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 12244578999999999987655432222 25789999999999996654
No 75
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.85 E-value=9e-21 Score=211.10 Aligned_cols=257 Identities=12% Similarity=0.042 Sum_probs=177.3
Q ss_pred HhHHhhcccCCCcEEEECCCchhH---HHHHHHHHHh--hcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLN---WYHHGKRWTD--KFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA 483 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~---~~~~g~~~ak--k~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~ 483 (781)
..+.++|++++||+||++.|.... +.. ..+.+ ..+ |++.++ |++.... ..|+.+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l--~~~~~~~~~~~p~~~~~-tD~~~~~----------------~~w~~~- 149 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVL--RWQGKELGKKIPFTTVV-TDLGTCH----------------PTWFHK- 149 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHH--HHHhhccCCCCCEEEEE-CCCCCcC----------------cccccC-
Confidence 457789999999999998776321 111 11211 224 666554 5542110 123334
Q ss_pred cCCEEEEcChhhhhc------C-CCcEEeeCCCCCCCCCCC-cchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHH
Q 003992 484 YCDKVLRLSAATQDL------P-KSVICNVHGVNPKFLQIG-EKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLA 555 (781)
Q Consensus 484 ~aD~VI~vS~~~k~l------~-~kivvi~nGVD~~~f~p~-~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~ 555 (781)
.+|.++++|+.+++. + .++.++.++|++.+..+. .+...++++|++++.++++++|+....|++..+++++.
T Consensus 150 ~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~ 229 (382)
T PLN02605 150 GVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALG 229 (382)
T ss_pred CCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHH
Confidence 699999999977652 2 356777788887765432 34456778999888999999999999999999999997
Q ss_pred Hhhc----cCCCcE-EEEEeCCCC-HHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCC
Q 003992 556 KHKN----DLDGFK-LDVFGNGED-AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGK 629 (781)
Q Consensus 556 ~L~~----~~p~i~-LvIVG~Gp~-~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~ 629 (781)
.+.. ..++.+ ++++|.|+. .+.+++.. .+..|.|+|++++..++|+.||++|.++ .|++++||||||+
T Consensus 230 ~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~--~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~ 303 (382)
T PLN02605 230 DSLYDKNLGKPIGQVVVICGRNKKLQSKLESRD--WKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGL 303 (382)
T ss_pred HhhccccccCCCceEEEEECCCHHHHHHHHhhc--ccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCC
Confidence 6531 135565 677787643 34454431 2334999999998889999999999865 4889999999999
Q ss_pred cEEEeCC------CCcceeecCCccccCCCHHHHHHHHHHHHhC-CCCCCCh-HHHH----cCCHHHHHHHHHHH
Q 003992 630 FVICADH------PSNEFFRSFPNCLTYKTSEDFVARVKEALAN-DPQPLTP-EQRY----NLSWEAATQRFIEY 692 (781)
Q Consensus 630 PVVaSd~------gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d-~~~r~~m-~~~~----~fSWe~iaerll~~ 692 (781)
|||+++. +...++.....++...|+++++++|.+++.| ++.+.+| +... ..+++.+++.+++.
T Consensus 304 PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 304 PIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred CEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999984 2334444445556669999999999999998 6666666 2333 34555555555443
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.84 E-value=6.1e-20 Score=209.26 Aligned_cols=260 Identities=9% Similarity=0.025 Sum_probs=172.0
Q ss_pred CcEEEECCCchhHHHHHHHHHHhhcC--CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhh-hh
Q 003992 421 ADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT-QD 497 (781)
Q Consensus 421 PDVIhl~~P~~l~~~~~g~~~akk~~--pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~-k~ 497 (781)
-|+|++|+...+ ..+ ..+.++.. ++....|+.++..-..... +.. +.+-+-+. .||.|-..+..- ++
T Consensus 128 ~d~vwvhDYhl~-l~p--~~lr~~~~~~~igfFlHipfP~~e~f~~l-p~r----~~il~gll--~~dligF~t~~~~~~ 197 (456)
T TIGR02400 128 GDIVWVHDYHLM-LLP--AMLRELGVQNKIGFFLHIPFPSSEIYRTL-PWR----RELLEGLL--AYDLVGFQTYDDARN 197 (456)
T ss_pred CCEEEEecchhh-HHH--HHHHhhCCCCeEEEEEeCCCCChHHHhhC-CcH----HHHHHHHh--cCCEEEECCHHHHHH
Confidence 589999986433 333 22222322 5667778877654321111 111 11112122 367776666522 22
Q ss_pred c-------------------C-C--CcEEeeCCCCCCCCCCCcch--------hhHhhhCcCCCCcEEEEEeeccCccCH
Q 003992 498 L-------------------P-K--SVICNVHGVNPKFLQIGEKV--------ATDREQGQQAFSKGAYFLGKMVWAKGY 547 (781)
Q Consensus 498 l-------------------~-~--kivvi~nGVD~~~f~p~~~~--------~~r~~~Gi~~~~~~ILfVGRL~~~KGi 547 (781)
+ . + ++.+++||||++.|.+.... ..+..++ ++++|++|||+++.||+
T Consensus 198 Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~vIl~VgRLd~~KGi 274 (456)
T TIGR02400 198 FLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GRKLIIGVDRLDYSKGL 274 (456)
T ss_pred HHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CCeEEEEccccccccCH
Confidence 0 0 1 24678999998877442111 1233333 67899999999999999
Q ss_pred HHHHHHHHHhhccCCC----cEEEEEe-----CCCCHHHHHHHHHhc--------C-C---cEEE-cCCCCCHH--HHHh
Q 003992 548 RELIDLLAKHKNDLDG----FKLDVFG-----NGEDAYEVQSAAKRL--------D-L---NLNF-QKGRDHAD--DSLH 603 (781)
Q Consensus 548 d~LLeA~~~L~~~~p~----i~LvIVG-----~Gp~~~~L~~~a~~l--------g-L---~V~F-lG~v~~~e--~ly~ 603 (781)
+.+++|++++.+++|+ +.|+++| +|++...+++.++++ + + .+.| .|.++..+ ++|+
T Consensus 275 ~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~ 354 (456)
T TIGR02400 275 PERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYR 354 (456)
T ss_pred HHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHH
Confidence 9999999999887776 5677774 556666666666543 1 1 2444 45566555 9999
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCc----EEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCC-CCCCh----
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKF----VICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDP-QPLTP---- 674 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~P----VVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~-~r~~m---- 674 (781)
.||+||+||..||||++++||||||+| ||+|+.+|......+.-.+.+.|+++++++|.++++++. +++++
T Consensus 355 aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~ 434 (456)
T TIGR02400 355 AADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELNGALLVNPYDIDGMADAIARALTMPLEEREERHRAM 434 (456)
T ss_pred hCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhCCcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999 999988775332221111566999999999999998654 33322
Q ss_pred -HHHHcCCHHHHHHHHHHHh
Q 003992 675 -EQRYNLSWEAATQRFIEYS 693 (781)
Q Consensus 675 -~~~~~fSWe~iaerll~~Y 693 (781)
+....+|+...++++++..
T Consensus 435 ~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 435 MDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHhhCCHHHHHHHHHHHh
Confidence 4557799999999998754
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=6.9e-19 Score=175.93 Aligned_cols=219 Identities=21% Similarity=0.169 Sum_probs=160.1
Q ss_pred EEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccce
Q 003992 312 VAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADFK 391 (781)
Q Consensus 312 IaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~~ 391 (781)
|++++..++|..+|.+......+..|.+.|+ +|+++...
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~-~v~v~~~~---------------------------------------- 39 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGH-EVEVVALL---------------------------------------- 39 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCC-eEEEEEec----------------------------------------
Confidence 6788888888788888777778999999886 99987500
Q ss_pred eeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHH
Q 003992 392 ISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQA 470 (781)
Q Consensus 392 i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~ 470 (781)
...+.+.+++.+||+||++++....+.. ..+.+..+ |++.++|+.+........
T Consensus 40 -----------------~~~~~~~~~~~~~D~i~~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~------ 94 (229)
T cd01635 40 -----------------LLLLLRILRGFKPDVVHAHGYYPAPLAL--LLAARLLGIPLVLTVHGVNRSLLEGVP------ 94 (229)
T ss_pred -----------------hHHHHHHHhhcCCCEEEEcCCCcHHHHH--HHHHhhCCCCEEEEEcCccHhhcccCc------
Confidence 0012234446789999999887665443 23445555 999999987755432110
Q ss_pred HHHHHHHHHHHHhcCCEEEEcChhhhhcCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHH
Q 003992 471 FFVKHINNWVTRAYCDKVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYREL 550 (781)
Q Consensus 471 ~l~k~l~r~l~r~~aD~VI~vS~~~k~l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~L 550 (781)
..... .... .++.+ |+|++.+.||++.+
T Consensus 95 --~~~~~-~~~~-~~~~~------------------------------------------------~~g~~~~~k~~~~~ 122 (229)
T cd01635 95 --LSLLA-LSIG-LADKV------------------------------------------------FVGRLAPEKGLDDL 122 (229)
T ss_pred --HHHHH-HHHh-hcceE------------------------------------------------EEEeecccCCHHHH
Confidence 01111 1111 12221 99999999999999
Q ss_pred HHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCHH---HHHhcccEEEEccCCCCChHHHHHHH
Q 003992 551 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHAD---DSLHGYKVFINPSISDVLCTATAEAL 625 (781)
Q Consensus 551 LeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e---~ly~~ADVfVlPS~~EgfGlviLEAM 625 (781)
++++..+.++.++++++++|.++........+.+.+.. |.++|+.+..+ .+++.||++++||..|++|++++|||
T Consensus 123 ~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam 202 (229)
T cd01635 123 IEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAM 202 (229)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHH
Confidence 99999999888999999999999887777655555544 99999974333 56666999999999999999999999
Q ss_pred HhCCcEEEeCCCCccee-ecCCcc
Q 003992 626 AMGKFVICADHPSNEFF-RSFPNC 648 (781)
Q Consensus 626 A~G~PVVaSd~gg~g~L-~~~~ng 648 (781)
+||+|||+|+.++...+ ....+|
T Consensus 203 ~~g~pvi~s~~~~~~e~i~~~~~g 226 (229)
T cd01635 203 ACGLPVIATDVGGPPEIVEDGLTG 226 (229)
T ss_pred hCCCCEEEcCCCCcceEEECCCce
Confidence 99999999999988653 334444
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.9e-19 Score=202.20 Aligned_cols=213 Identities=15% Similarity=0.203 Sum_probs=159.0
Q ss_pred cCCEEEEcChh-hhhcC----------------CCcEEeeCCCCCCCCCCCcc-------------------hhhHhhhC
Q 003992 484 YCDKVLRLSAA-TQDLP----------------KSVICNVHGVNPKFLQIGEK-------------------VATDREQG 527 (781)
Q Consensus 484 ~aD~VI~vS~~-~k~l~----------------~kivvi~nGVD~~~f~p~~~-------------------~~~r~~~G 527 (781)
++|.|.++|.. .+++. .+..-|.||+|...++|... ...+.++|
T Consensus 208 ~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~g 287 (487)
T COG0297 208 YADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLG 287 (487)
T ss_pred eccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhC
Confidence 59999999994 44421 12356789998766654311 12344567
Q ss_pred cC--CCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcE-EEcCCCCCHH-HH
Q 003992 528 QQ--AFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNL-NFQKGRDHAD-DS 601 (781)
Q Consensus 528 i~--~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V-~FlG~v~~~e-~l 601 (781)
++ .+.+.+.+|||+..+||++.+++++..+.+.. +++++.|.|+. .+.+..+++++...+ ...|+..... .+
T Consensus 288 L~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i 365 (487)
T COG0297 288 LDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLI 365 (487)
T ss_pred CCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHH
Confidence 76 24588999999999999999999999998874 99999999933 266777777766553 3445544433 89
Q ss_pred HhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcc-eee--------cCCccccC--CCHHHHHHHHHHHHh---C
Q 003992 602 LHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNE-FFR--------SFPNCLTY--KTSEDFVARVKEALA---N 667 (781)
Q Consensus 602 y~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g-~L~--------~~~ngv~~--~D~eeLa~aI~~LL~---d 667 (781)
|+.+|++++||++|++|++-++||+.|++.|+...||.. -+. +..+|+.+ .|+++++.+|.+++. +
T Consensus 366 ~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~ 445 (487)
T COG0297 366 YAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRA 445 (487)
T ss_pred HhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999862 222 13556444 899999999998774 3
Q ss_pred CCC-CCCh---HHHHcCCHHHHHHHHHHHhhhccccc
Q 003992 668 DPQ-PLTP---EQRYNLSWEAATQRFIEYSELNRILN 700 (781)
Q Consensus 668 ~~~-r~~m---~~~~~fSWe~iaerll~~Ye~~~vl~ 700 (781)
++. .+.+ ....+|+|+..++++.+.|+ .+++
T Consensus 446 ~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~--~~~~ 480 (487)
T COG0297 446 PPLLWRKVQPNAMGADFSWDLSAKEYVELYK--PLLS 480 (487)
T ss_pred CHHHHHHHHHhhcccccCchhHHHHHHHHHH--HHhc
Confidence 333 2222 22358999999999999999 6654
No 79
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.81 E-value=8.4e-20 Score=220.15 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=174.7
Q ss_pred CcEEEECCCchhHHHHHHHHHHhhcC--CEEEEEECCcHHHHHHhhcchhHHHHHH--------------HHHHHHHHhc
Q 003992 421 ADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVK--------------HINNWVTRAY 484 (781)
Q Consensus 421 PDVIhl~~P~~l~~~~~g~~~akk~~--pvV~ivHt~y~~y~~~~~~~~~~~~l~k--------------~l~r~l~r~~ 484 (781)
-|+|.+|+.. +.... ..+.++.. ++....|+.++.+-...... ....+.+ +...++. .
T Consensus 148 ~d~vWvhDYh-L~llp--~~lR~~~~~~~igfFlHiPFPs~e~fr~lp-~r~~il~gll~aDligF~t~~y~r~Fl~--~ 221 (797)
T PLN03063 148 GDVVWCHDYH-LMFLP--QYLKEYNNKMKVGWFLHTPFPSSEIYKTLP-SRSELLRAVLTADLIGFHTYDFARHFLS--A 221 (797)
T ss_pred CCEEEEecch-hhhHH--HHHHHhCCCCcEEEEecCCCCCHHHHhhCC-CHHHHHHHHhcCCEEEeCCHHHHHHHHH--H
Confidence 4899999854 33333 22333333 77778898887654322111 1111111 1111111 1
Q ss_pred CCEEEEcChhhhhc--C---CCcEEeeCCCCCCCCCCCcc-----h---hhHhhhCcCCCCcEEEEEeeccCccCHHHHH
Q 003992 485 CDKVLRLSAATQDL--P---KSVICNVHGVNPKFLQIGEK-----V---ATDREQGQQAFSKGAYFLGKMVWAKGYRELI 551 (781)
Q Consensus 485 aD~VI~vS~~~k~l--~---~kivvi~nGVD~~~f~p~~~-----~---~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LL 551 (781)
|+.++.++.....+ . .++.++++|||+..|.+... . ..+..++ ++++|++|||+.+.||+..++
T Consensus 222 ~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL 298 (797)
T PLN03063 222 CTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKY 298 (797)
T ss_pred HHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHH
Confidence 44444433221111 1 13568899999876643211 1 1122232 578999999999999999999
Q ss_pred HHHHHhhccCCCcE--EEEE-------eCCCCHHHHHHHHHhcC--Cc----------EEEc-CCCCCHH--HHHhcccE
Q 003992 552 DLLAKHKNDLDGFK--LDVF-------GNGEDAYEVQSAAKRLD--LN----------LNFQ-KGRDHAD--DSLHGYKV 607 (781)
Q Consensus 552 eA~~~L~~~~p~i~--LvIV-------G~Gp~~~~L~~~a~~lg--L~----------V~Fl-G~v~~~e--~ly~~ADV 607 (781)
+|++++.+.+|+++ ++++ |+|++.+++++.+.++. ++ |.|+ +.++..+ ++|+.|||
T Consensus 299 ~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADv 378 (797)
T PLN03063 299 LAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDV 378 (797)
T ss_pred HHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCE
Confidence 99999988888763 3333 35556666776666543 21 3443 3566666 99999999
Q ss_pred EEEccCCCCChHHHHHHHHhCCc----EEEeCCCCcceeec-CCccccCCCHHHHHHHHHHHHhC-CCCCCCh-----HH
Q 003992 608 FINPSISDVLCTATAEALAMGKF----VICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALAN-DPQPLTP-----EQ 676 (781)
Q Consensus 608 fVlPS~~EgfGlviLEAMA~G~P----VVaSd~gg~g~L~~-~~ngv~~~D~eeLa~aI~~LL~d-~~~r~~m-----~~ 676 (781)
||+||..||||++++||||||+| +|+|+.+|.....+ +.-.+.+.|+++++++|.++|+. +++++.. +.
T Consensus 379 fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~ 458 (797)
T PLN03063 379 MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQY 458 (797)
T ss_pred EEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999 99999887654332 11125669999999999999994 4444332 56
Q ss_pred HHcCCHHHHHHHHHHHhhhcccc
Q 003992 677 RYNLSWEAATQRFIEYSELNRIL 699 (781)
Q Consensus 677 ~~~fSWe~iaerll~~Ye~~~vl 699 (781)
..+++|..-++.+++.++ ++.
T Consensus 459 v~~~~~~~Wa~~fl~~l~--~~~ 479 (797)
T PLN03063 459 VKTHSAQKWADDFMSELN--DII 479 (797)
T ss_pred hhhCCHHHHHHHHHHHHH--HHh
Confidence 788999999999999887 554
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.81 E-value=3.7e-20 Score=181.51 Aligned_cols=153 Identities=22% Similarity=0.253 Sum_probs=128.0
Q ss_pred hHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhcc-CCCcEEEEEeCCCCHHHHHHHHHhcCCc--EEEcCCCCCH
Q 003992 522 TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND-LDGFKLDVFGNGEDAYEVQSAAKRLDLN--LNFQKGRDHA 598 (781)
Q Consensus 522 ~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~-~p~i~LvIVG~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~ 598 (781)
.+...+...++++++|+|++.+.||++.+++++..+.++ .++++++|+|+++....++..++..++. +.|+|..+..
T Consensus 5 ~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 5 LREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp HHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHH
T ss_pred HHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccc
Confidence 445566667889999999999999999999999999864 6899999999999989999999988885 9999999833
Q ss_pred --HHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceee-cCCcc--ccCCCHHHHHHHHHHHHhCCCCCCC
Q 003992 599 --DDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFR-SFPNC--LTYKTSEDFVARVKEALANDPQPLT 673 (781)
Q Consensus 599 --e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~~ng--v~~~D~eeLa~aI~~LL~d~~~r~~ 673 (781)
..+|+.||++++||..|+||++++|||+||+|||+++.|+...+. .+.+| +...|+++++++|.+++++++.+..
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~ 164 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQK 164 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHH
Confidence 399999999999999999999999999999999999998775433 34444 3448899999999999999866655
Q ss_pred h
Q 003992 674 P 674 (781)
Q Consensus 674 m 674 (781)
|
T Consensus 165 l 165 (172)
T PF00534_consen 165 L 165 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 81
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.74 E-value=5.7e-17 Score=178.95 Aligned_cols=266 Identities=12% Similarity=0.056 Sum_probs=166.2
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+.+++++||+||++.....+..+ ...++..+ |++.+-+.. ..+. .+. .+. ...++.+....||.+
T Consensus 76 ~~l~~~l~~~~pDiv~~~gd~~~~la~--a~aa~~~~ipv~h~~~g~-~s~~-~~~--~~~----~~~~r~~~~~~ad~~ 145 (365)
T TIGR00236 76 EGLEELLLEEKPDIVLVQGDTTTTLAG--ALAAFYLQIPVGHVEAGL-RTGD-RYS--PMP----EEINRQLTGHIADLH 145 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHH--HHHHHHhCCCEEEEeCCC-CcCC-CCC--CCc----cHHHHHHHHHHHHhc
Confidence 468889999999999999754433332 45566667 875332211 0000 000 000 112232222258999
Q ss_pred EEcChhhhh-c------CCCcEEeeCCC-CCCCCC--CCcchhhHhhhCcCCCCcEEEEEe-ec-cCccCHHHHHHHHHH
Q 003992 489 LRLSAATQD-L------PKSVICNVHGV-NPKFLQ--IGEKVATDREQGQQAFSKGAYFLG-KM-VWAKGYRELIDLLAK 556 (781)
Q Consensus 489 I~vS~~~k~-l------~~kivvi~nGV-D~~~f~--p~~~~~~r~~~Gi~~~~~~ILfVG-RL-~~~KGid~LLeA~~~ 556 (781)
+++|+..++ + +.++.++.||+ |..... .......+..++. ..+++++.| |. ...||++.+++++.+
T Consensus 146 ~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~k~~~~ll~a~~~ 223 (365)
T TIGR00236 146 FAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRENVGEPLENIFKAIRE 223 (365)
T ss_pred cCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCchhhhhhHHHHHHHHHHH
Confidence 999997765 2 23567888986 432211 1112233444542 234565555 43 345999999999999
Q ss_pred hhccCCCcEEEEEeCCCCHHHHHHHHHhcCC--cEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEE
Q 003992 557 HKNDLDGFKLDVFGNGEDAYEVQSAAKRLDL--NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVI 632 (781)
Q Consensus 557 L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL--~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVV 632 (781)
+.+..|+++++++|.+... ....+.+.++. +|.|+|.....+ .+|+.+|+++.+| |..++|||+||+|||
T Consensus 224 l~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI 297 (365)
T TIGR00236 224 IVEEFEDVQIVYPVHLNPV-VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVL 297 (365)
T ss_pred HHHHCCCCEEEEECCCChH-HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEE
Confidence 8877788999988654322 11122233333 399999887665 7899999999988 566899999999999
Q ss_pred Ee-CCCCcceeec-CCccccCCCHHHHHHHHHHHHhCCCCCCChHHH-----HcCCHHHHHHHHHHHh
Q 003992 633 CA-DHPSNEFFRS-FPNCLTYKTSEDFVARVKEALANDPQPLTPEQR-----YNLSWEAATQRFIEYS 693 (781)
Q Consensus 633 aS-d~gg~g~L~~-~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~~~-----~~fSWe~iaerll~~Y 693 (781)
++ +.++...+.. +.+.+...|+++++++|.++++|++.+.+|... ...+++.+++.+.+.|
T Consensus 298 ~~~~~~~~~e~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~~ 365 (365)
T TIGR00236 298 VLRDTTERPETVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNHY 365 (365)
T ss_pred ECCCCCCChHHHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhhC
Confidence 96 6665544333 334344579999999999999998776666221 2345566666555543
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.74 E-value=1.8e-17 Score=199.26 Aligned_cols=192 Identities=11% Similarity=0.082 Sum_probs=141.7
Q ss_pred cEEeeCCCCCCCCCCCcch-h-------hHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC----cEEEEE
Q 003992 502 VICNVHGVNPKFLQIGEKV-A-------TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVF 569 (781)
Q Consensus 502 ivvi~nGVD~~~f~p~~~~-~-------~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~----i~LvIV 569 (781)
+.++++|||++.|.+.... . .+.. ..++++|++|||+++.||+..+++|+.++.+.+|+ ++|+++
T Consensus 230 v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~---~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v 306 (726)
T PRK14501 230 VDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQD---LRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQV 306 (726)
T ss_pred EEEEECeEcHHHHHHHhcCchHHHHHHHHHHH---cCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEE
Confidence 5678999998777543211 1 1222 23577999999999999999999999999888786 689888
Q ss_pred eC----C-CCHHHHHHHHHhc----C-------C-c-EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHh--
Q 003992 570 GN----G-EDAYEVQSAAKRL----D-------L-N-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAM-- 627 (781)
Q Consensus 570 G~----G-p~~~~L~~~a~~l----g-------L-~-V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~-- 627 (781)
|. | ++.+++++.+.++ + . . +.|.|.++..+ ++|+.||+|++||..||||++++|||||
T Consensus 307 ~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~ 386 (726)
T PRK14501 307 AVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRT 386 (726)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcC
Confidence 73 3 4344555544432 1 1 2 45678888776 9999999999999999999999999999
Q ss_pred ---CCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCC-CCC-Ch----HHHHcCCHHHHHHHHHHHhhhccc
Q 003992 628 ---GKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDP-QPL-TP----EQRYNLSWEAATQRFIEYSELNRI 698 (781)
Q Consensus 628 ---G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~-~r~-~m----~~~~~fSWe~iaerll~~Ye~~~v 698 (781)
|.||++...|+...+.+ .-.+.+.|+++++++|.++++++. ++. ++ +....|||+..++++++.|. ++
T Consensus 387 ~~~g~~vls~~~G~~~~l~~-~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~--~~ 463 (726)
T PRK14501 387 DGDGVLILSEMAGAAAELAE-ALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELR--EA 463 (726)
T ss_pred CCCceEEEecccchhHHhCc-CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HH
Confidence 55777777776644321 111566999999999999998753 222 22 45678999999999999998 65
Q ss_pred c
Q 003992 699 L 699 (781)
Q Consensus 699 l 699 (781)
.
T Consensus 464 ~ 464 (726)
T PRK14501 464 A 464 (726)
T ss_pred H
Confidence 3
No 83
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.74 E-value=1.1e-16 Score=175.34 Aligned_cols=263 Identities=10% Similarity=0.005 Sum_probs=172.7
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+.+++.+||+||++......+.+ ..+++..+ |++.+.|... .+.. . .... ....++.+ .+|.+
T Consensus 78 ~~l~~~l~~~~pDvV~~~g~~~~~~~~--~~aa~~~~iPvv~~~~g~~-s~~~---~-~~~~----~~r~~~~~-~ad~~ 145 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVLGDTNETLAA--ALAAFKLGIPVAHVEAGLR-SFDR---G-MPDE----ENRHAIDK-LSDLH 145 (363)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHH--HHHHHHcCCCEEEEecccc-cCCC---C-CCch----HHHHHHHH-Hhhhc
Confidence 457778888899999999644333332 45566667 8775544321 1100 0 0001 11112333 58999
Q ss_pred EEcChhhhhc-------CCCcEEeeCCC-CCCCCCCC--cchhhHhhhCcCCCCcEEEEEeeccC---ccCHHHHHHHHH
Q 003992 489 LRLSAATQDL-------PKSVICNVHGV-NPKFLQIG--EKVATDREQGQQAFSKGAYFLGKMVW---AKGYRELIDLLA 555 (781)
Q Consensus 489 I~vS~~~k~l-------~~kivvi~nGV-D~~~f~p~--~~~~~r~~~Gi~~~~~~ILfVGRL~~---~KGid~LLeA~~ 555 (781)
+++|+..++. +.++.++.|++ |...+... .....+..+++++...+++++|+... .||++.+++++.
T Consensus 146 ~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 146 FAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALA 225 (363)
T ss_pred cCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHH
Confidence 9999977663 23566778875 53222111 11112335666555556778998875 799999999999
Q ss_pred HhhccCCCcEEEEEeCCCCHHHHHHHHHhcCC---cEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCc
Q 003992 556 KHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDL---NLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKF 630 (781)
Q Consensus 556 ~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL---~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~P 630 (781)
++.+. ++.+++.|+++..+.+++.+.++++ .|.|+|.....+ .+|+.||++|.+|- | ++.|||++|+|
T Consensus 226 ~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~P 298 (363)
T cd03786 226 ELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVP 298 (363)
T ss_pred HHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCC
Confidence 88654 6788888888888889988887764 399998766444 78999999999994 4 47999999999
Q ss_pred EEEeCCCC-cceeecCCccccC-CCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHH
Q 003992 631 VICADHPS-NEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEY 692 (781)
Q Consensus 631 VVaSd~gg-~g~L~~~~ngv~~-~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~ 692 (781)
||+++..+ ..++.....++.. .|+++++++|.++++++..+..|. ...|.-...+++..+.
T Consensus 299 vI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~-~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 299 VLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS-INPYGDGNASERIVEI 361 (363)
T ss_pred EEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhcCchhhhcCC-CCCCCCCHHHHHHHHH
Confidence 99996433 3233332222333 479999999999999988877776 4455444555555543
No 84
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=9.8e-16 Score=158.70 Aligned_cols=203 Identities=22% Similarity=0.276 Sum_probs=156.2
Q ss_pred CCEEEEcChhhhh-----cCC-CcEEeeCCCCCCCCCCCcchhhHhhhCcCCC--CcEEEEEeeccCccCHHHHHHHHHH
Q 003992 485 CDKVLRLSAATQD-----LPK-SVICNVHGVNPKFLQIGEKVATDREQGQQAF--SKGAYFLGKMVWAKGYRELIDLLAK 556 (781)
Q Consensus 485 aD~VI~vS~~~k~-----l~~-kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~--~~~ILfVGRL~~~KGid~LLeA~~~ 556 (781)
++.+++.+..... ... +...+++++++..+... ...+... ...++++|++.+.||++.+++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPA-------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAK 223 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCcc-------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHH
Confidence 7888888886533 122 46778899987766542 1111122 2689999999999999999999999
Q ss_pred hhccCCCcEEEEEeCCCC-HHHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcE
Q 003992 557 HKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFV 631 (781)
Q Consensus 557 L~~~~p~i~LvIVG~Gp~-~~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PV 631 (781)
+....+++.++++|.|+. .+.+...+.+.+.. |.|+|..+..+ .+++.+|++++||..|+||++++||||+|+||
T Consensus 224 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pv 303 (381)
T COG0438 224 LKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPV 303 (381)
T ss_pred hhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcE
Confidence 988777799999999988 36666677777653 99999988333 78888999999999999999999999999999
Q ss_pred EEeCCCCcceeecCC-cccc--CCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 632 ICADHPSNEFFRSFP-NCLT--YKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 632 VaSd~gg~g~L~~~~-ngv~--~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
|+++.++...+.... +|+. ..+.+++++++..++++...+..+ .....|+|+..++++.+.|.
T Consensus 304 i~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 304 IASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred EECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999998665444332 2432 246899999999999887333332 12268999999999999987
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.69 E-value=1.4e-15 Score=168.08 Aligned_cols=243 Identities=11% Similarity=0.060 Sum_probs=153.8
Q ss_pred hHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCE
Q 003992 409 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 487 (781)
Q Consensus 409 v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~ 487 (781)
...+.+++++++||+||+++...+.... ...+++.+ |++...+.. .+. +.....++ +.+ .+|.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~~~~~--a~~a~~~~ip~i~~~~~~--~~~----------~~~~~~~~-~~~-~~d~ 137 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDFNLRL--EKKLRKAGIPTIHYVSPS--VWA----------WRQGRAFK-IAK-ATDH 137 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHH--HHHHHHCCCCEEEEeCCc--hhh----------cCchHHHH-HHH-HHhh
Confidence 3467888999999999987632221111 23344556 876554432 111 00111122 233 5899
Q ss_pred EEEcChhhhhcC-C---CcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEE-EEe-eccCc-cCHHHHHHHHHHhhcc
Q 003992 488 VLRLSAATQDLP-K---SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAY-FLG-KMVWA-KGYRELIDLLAKHKND 560 (781)
Q Consensus 488 VI~vS~~~k~l~-~---kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~IL-fVG-RL~~~-KGid~LLeA~~~L~~~ 560 (781)
++++|+..++.. + ++.++.|.+.........+...+..++++++.++++ +.| |.... ++++.+++++..+.+.
T Consensus 138 i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~ 217 (380)
T PRK00025 138 VLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQR 217 (380)
T ss_pred heeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998765532 1 223333333222211122334566778776666654 444 33333 4578999999999877
Q ss_pred CCCcEEEEEeC-CCCHHHHHHHHHhc-CCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCC-C
Q 003992 561 LDGFKLDVFGN-GEDAYEVQSAAKRL-DLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADH-P 637 (781)
Q Consensus 561 ~p~i~LvIVG~-Gp~~~~L~~~a~~l-gL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~-g 637 (781)
.|+++++++|+ ++..+.+++.+++. ++.+.+.. ++...+|+.||++|.+| |.+++|||+||+|||++.. +
T Consensus 218 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 218 YPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred CCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccC
Confidence 78999999986 66667888888777 67766644 35568999999999998 8888999999999998722 1
Q ss_pred ----------------Ccce-eecCC--ccc--cCCCHHHHHHHHHHHHhCCCCCCCh
Q 003992 638 ----------------SNEF-FRSFP--NCL--TYKTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 638 ----------------g~g~-L~~~~--ngv--~~~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
+... +.+.. .++ ...|+++++++|.++++|++.+.+|
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 348 (380)
T PRK00025 291 PLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQAL 348 (380)
T ss_pred HHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 1111 11111 112 2368999999999999999888777
No 86
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.61 E-value=3.6e-14 Score=160.20 Aligned_cols=213 Identities=14% Similarity=0.119 Sum_probs=155.4
Q ss_pred cCCEEEEcChhhhhcC--------C-CcEEeeCCCCCCCCCCCc-------chhhHhhhCcCCCCcEEEEEeeccCccCH
Q 003992 484 YCDKVLRLSAATQDLP--------K-SVICNVHGVNPKFLQIGE-------KVATDREQGQQAFSKGAYFLGKMVWAKGY 547 (781)
Q Consensus 484 ~aD~VI~vS~~~k~l~--------~-kivvi~nGVD~~~f~p~~-------~~~~r~~~Gi~~~~~~ILfVGRL~~~KGi 547 (781)
.+|++++.|..++... . ++.+.+.+||.+.+.+.. +...+...+.........-+-++.+.||+
T Consensus 209 ~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~ 288 (495)
T KOG0853|consen 209 LAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQ 288 (495)
T ss_pred ccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCc
Confidence 3788888888665421 1 356777888866554321 11111222333334455677888999999
Q ss_pred HHHHHHHHHhhccC-----CCcEEEEEeCC-CC---------HHHHHHHHHhcCCc---EEEcCCCCCHHHHHhccc---
Q 003992 548 RELIDLLAKHKNDL-----DGFKLDVFGNG-ED---------AYEVQSAAKRLDLN---LNFQKGRDHADDSLHGYK--- 606 (781)
Q Consensus 548 d~LLeA~~~L~~~~-----p~i~LvIVG~G-p~---------~~~L~~~a~~lgL~---V~FlG~v~~~e~ly~~AD--- 606 (781)
+.+++++..+.... ++.+++++|+- .+ ..+++++++++++. |.|+......+.+...+|
T Consensus 289 ~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~ 368 (495)
T KOG0853|consen 289 DLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKG 368 (495)
T ss_pred eeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcce
Confidence 99999999988776 45788888832 11 16777888898874 888888887774444444
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc-ceeecCCccccC-CCHH---HHHHHHHHHHhCCCCCCCh-----H-
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTY-KTSE---DFVARVKEALANDPQPLTP-----E- 675 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~-g~L~~~~ngv~~-~D~e---eLa~aI~~LL~d~~~r~~m-----~- 675 (781)
+|+.|.. |.||++++||||||+||||++.||. +.+..+.+|+.. .+.+ .+++++.++..|++.+.+| +
T Consensus 369 v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~r 447 (495)
T KOG0853|consen 369 VLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKR 447 (495)
T ss_pred EEecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7788887 9999999999999999999999987 445567777544 3555 5999999999999998888 3
Q ss_pred HHHcCCHHHHHHHHHHHhhhcccc
Q 003992 676 QRYNLSWEAATQRFIEYSELNRIL 699 (781)
Q Consensus 676 ~~~~fSWe~iaerll~~Ye~~~vl 699 (781)
..+.|||....+++.+... +.+
T Consensus 448 V~e~fs~~~~~~ri~~~~~--~~~ 469 (495)
T KOG0853|consen 448 VKEMFSWQHYSERIASVLG--KYL 469 (495)
T ss_pred HHHHHhHHHHHHHHHHHhH--hcC
Confidence 3456999999999988877 544
No 87
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.60 E-value=1.8e-15 Score=142.68 Aligned_cols=130 Identities=25% Similarity=0.318 Sum_probs=94.1
Q ss_pred cEEEEEeeccCccCHHHHHH-HHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEc
Q 003992 533 KGAYFLGKMVWAKGYRELID-LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 611 (781)
Q Consensus 533 ~~ILfVGRL~~~KGid~LLe-A~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlP 611 (781)
..++++|++.+.|+++.+++ ++.++.++.|+++|+|+|.+++ ++++. . ..+|.|+|++++..++|+.||++++|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~--~~~v~~~g~~~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-R--RPNVRFHGFVEELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-H--HCTEEEE-S-HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-c--CCCEEEcCCHHHHHHHHHhCCEEEEE
Confidence 56789999999999999999 9999999999999999999887 24444 2 22499999995444999999999999
Q ss_pred cC-CCCChHHHHHHHHhCCcEEEeCCCCcceeec-CCccccCCCHHHHHHHHHHHHhC
Q 003992 612 SI-SDVLCTATAEALAMGKFVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 612 S~-~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
+. .++++++++|||++|+|||+++.+..+++.. +.+++..+|+++|+++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 95 6789999999999999999999854455432 33334479999999999999976
No 88
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.58 E-value=3.1e-14 Score=156.08 Aligned_cols=219 Identities=15% Similarity=0.085 Sum_probs=140.5
Q ss_pred HHhhcccCCC-cEEEECCCchhHH-H-HHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCE
Q 003992 412 TSQFIPSKDA-DIAILEEPEHLNW-Y-HHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 487 (781)
Q Consensus 412 L~k~I~~~kP-DVIhl~~P~~l~~-~-~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~ 487 (781)
+...+...++ |+||++.|..++. + .......++.+ |++.++|+.++.... .. ..+ ...++++.+ .||.
T Consensus 55 ~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~--~~----~~~-~~~~~~~~~-~aD~ 126 (333)
T PRK09814 55 LDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFD--SN----YYL-MKEEIDMLN-LADV 126 (333)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcc--cc----chh-hHHHHHHHH-hCCE
Confidence 3445666778 9999999977652 1 21223344446 999999997654221 11 111 233455555 6999
Q ss_pred EEEcChhhhhcC-------CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhcc
Q 003992 488 VLRLSAATQDLP-------KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND 560 (781)
Q Consensus 488 VI~vS~~~k~l~-------~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~ 560 (781)
||++|+.+++.. .+++++.+..++..... +. .....+.++|+|++....++ . ..
T Consensus 127 iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~------~~---~~~~~~~i~yaG~l~k~~~l----~------~~ 187 (333)
T PRK09814 127 LIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIEL------VK---TPSFQKKINFAGNLEKSPFL----K------NW 187 (333)
T ss_pred EEECCHHHHHHHHHcCCCcCceEecccccccccccc------cc---cccCCceEEEecChhhchHH----H------hc
Confidence 999999887742 12333333222211111 00 11235689999999944321 1 12
Q ss_pred CCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEcc-C----------CCCChHHHHHHHHh
Q 003992 561 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPS-I----------SDVLCTATAEALAM 627 (781)
Q Consensus 561 ~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS-~----------~EgfGlviLEAMA~ 627 (781)
.++++|+|+|+|+... ...-+|.|+|+++..+ .+|+. |+.+.+. . .-++|..+.|+|||
T Consensus 188 ~~~~~l~i~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~ 259 (333)
T PRK09814 188 SQGIKLTVFGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAA 259 (333)
T ss_pred CCCCeEEEECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHC
Confidence 3679999999998754 1222499999999887 66777 5444332 1 13578899999999
Q ss_pred CCcEEEeCCCCcceee-cCCccccCCCHHHHHHHHHHHH
Q 003992 628 GKFVICADHPSNEFFR-SFPNCLTYKTSEDFVARVKEAL 665 (781)
Q Consensus 628 G~PVVaSd~gg~g~L~-~~~ngv~~~D~eeLa~aI~~LL 665 (781)
|+|||+++.++...++ .+.+|+..++.++++++|..+.
T Consensus 260 G~PVI~~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~ 298 (333)
T PRK09814 260 GLPVIVWSKAAIADFIVENGLGFVVDSLEELPEIIDNIT 298 (333)
T ss_pred CCCEEECCCccHHHHHHhCCceEEeCCHHHHHHHHHhcC
Confidence 9999999998876544 4677787788999999999853
No 89
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.58 E-value=9.5e-14 Score=158.87 Aligned_cols=190 Identities=11% Similarity=-0.002 Sum_probs=142.5
Q ss_pred cEEeeCCCCCCCCCCCc--------chhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC----cEEEEE
Q 003992 502 VICNVHGVNPKFLQIGE--------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVF 569 (781)
Q Consensus 502 ivvi~nGVD~~~f~p~~--------~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~----i~LvIV 569 (781)
+.++|.|||++.|.... ....+++++ ++++|++|+|++..||+...++|++++.+++|+ ++|+++
T Consensus 250 v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi 326 (487)
T TIGR02398 250 LGAHPVGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTA 326 (487)
T ss_pred EEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEE
Confidence 35678899987763321 122345555 678999999999999999999999999888886 699999
Q ss_pred eCCC-----C----HHHHHHHHHhc-------CCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCC
Q 003992 570 GNGE-----D----AYEVQSAAKRL-------DLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 629 (781)
Q Consensus 570 G~Gp-----~----~~~L~~~a~~l-------gL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~ 629 (781)
|.+. . ..++++++.+. +.. +.|.+.++..+ .+|+.|||++.+|..||++++..|+|||+.
T Consensus 327 ~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~ 406 (487)
T TIGR02398 327 CVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG 406 (487)
T ss_pred eCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhc
Confidence 8753 2 24455555442 222 66778888777 999999999999999999999999999999
Q ss_pred ----cEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCCCCC--Ch----HHHHcCCHHHHHHHHHHHhh
Q 003992 630 ----FVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPL--TP----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 630 ----PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~--~m----~~~~~fSWe~iaerll~~Ye 694 (781)
|+|.|..+|......+.--+.+.|+++++++|.++|+.+..-+ ++ +....++-..-++.+++...
T Consensus 407 ~~~GvLILSefaGaa~~l~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 407 LLDGVLVLSEFAGAAVELKGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVS 481 (487)
T ss_pred CCCCCEEEeccccchhhcCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 9999998877432223223666999999999999999875422 22 44556666666777776554
No 90
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.51 E-value=1.9e-13 Score=153.05 Aligned_cols=236 Identities=10% Similarity=0.040 Sum_probs=153.8
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+.+++++||+|+..+...+++.. ...++..+ |++..+......+. .+ .++.+.+ +||.|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~~--a~aa~~~gip~v~~i~P~~waw~---~~----------~~r~l~~-~~d~v 142 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLTK--ELKKKDPGIKIIYYISPQVWAWR---KW----------RAKKIEK-ATDFL 142 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHHH--HHHHhhCCCCEEEEeCCcHhhcC---cc----------hHHHHHH-HHhHh
Confidence 357788999999999998854444332 34556666 77643321111111 11 1445555 79999
Q ss_pred EEcChhhhhcC-C---CcEEeeCCCCCCCCCC-CcchhhHhhhCcCCCCcEEEEEe--eccC-ccCHHHHHHHHHHhhcc
Q 003992 489 LRLSAATQDLP-K---SVICNVHGVNPKFLQI-GEKVATDREQGQQAFSKGAYFLG--KMVW-AKGYRELIDLLAKHKND 560 (781)
Q Consensus 489 I~vS~~~k~l~-~---kivvi~nGVD~~~f~p-~~~~~~r~~~Gi~~~~~~ILfVG--RL~~-~KGid~LLeA~~~L~~~ 560 (781)
++.++..+++. + +..++.|++....... ..+...++.++++++.++++++| |..+ .|++..+++++..+.+.
T Consensus 143 ~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~ 222 (385)
T TIGR00215 143 LAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ 222 (385)
T ss_pred hccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 99999776532 2 3445556663222211 23344566788877778777653 6666 79999999999999888
Q ss_pred CCCcEEEEE-eCCCCHHHHHHHHHhcCCc--EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 561 LDGFKLDVF-GNGEDAYEVQSAAKRLDLN--LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 561 ~p~i~LvIV-G~Gp~~~~L~~~a~~lgL~--V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
.|+++++++ +++...+.+++..+.++.. |.+++. +...+|+.||++|.+| |.+++|||+||+|+|.+.--
T Consensus 223 ~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 223 EPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRM 295 (385)
T ss_pred CCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcC
Confidence 889988665 4555666677766665433 666543 4457999999999999 88888999999999988321
Q ss_pred C-c-----------cee-----ecCCcc----ccC-CCHHHHHHHHHHHHhCC
Q 003992 638 S-N-----------EFF-----RSFPNC----LTY-KTSEDFVARVKEALAND 668 (781)
Q Consensus 638 g-~-----------g~L-----~~~~ng----v~~-~D~eeLa~aI~~LL~d~ 668 (781)
+ . .++ ..+... +.. -+++.+++.+.++++|+
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 1 0 111 111111 111 56889999999999888
No 91
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.45 E-value=7.1e-13 Score=160.59 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=133.4
Q ss_pred EeeCCCCCCCCCCCc--------chhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcE--EEEE----
Q 003992 504 CNVHGVNPKFLQIGE--------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFK--LDVF---- 569 (781)
Q Consensus 504 vi~nGVD~~~f~p~~--------~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~--LvIV---- 569 (781)
+.+-|||+..|.... ....+.+++ ++++|+.|+|++..||+...+.||.++.+++|+++ ++++
T Consensus 330 ~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~ 406 (934)
T PLN03064 330 AFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAV 406 (934)
T ss_pred EEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcC
Confidence 456799987764321 112344444 57899999999999999999999999888888864 6666
Q ss_pred ---eCCCCHHHHHHHHHh--------cCC----cEEEcC-CCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCC--
Q 003992 570 ---GNGEDAYEVQSAAKR--------LDL----NLNFQK-GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK-- 629 (781)
Q Consensus 570 ---G~Gp~~~~L~~~a~~--------lgL----~V~FlG-~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~-- 629 (781)
|++++.++++..+.+ .|- .|.|+. .++..+ ++|+.||||++||..|||+++..|||||+.
T Consensus 407 psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~ 486 (934)
T PLN03064 407 PTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSK 486 (934)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCC
Confidence 666666555444432 111 155443 355555 999999999999999999999999999944
Q ss_pred --cEEEeCCCCcceeec-CCccccCCCHHHHHHHHHHHHh-CCCCCCCh-----HHHHcCCHHHHHHHHHHHhh
Q 003992 630 --FVICADHPSNEFFRS-FPNCLTYKTSEDFVARVKEALA-NDPQPLTP-----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 630 --PVVaSd~gg~g~L~~-~~ngv~~~D~eeLa~aI~~LL~-d~~~r~~m-----~~~~~fSWe~iaerll~~Ye 694 (781)
++|.|...|.....+ +.-.+.+.|+++++++|.++|+ +++++..+ +....++|..-++.|++...
T Consensus 487 ~GvLILSEfaGaa~~L~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 487 KGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELN 560 (934)
T ss_pred CCCeEEeCCCchHHHhCCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 444477766532221 1222566999999999999998 44444433 45678899999999887665
No 92
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.44 E-value=1.3e-11 Score=131.72 Aligned_cols=268 Identities=12% Similarity=0.073 Sum_probs=173.8
Q ss_pred hhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcH--HHHHHhhc---chhHHHHHHHHHHHHHHh----
Q 003992 414 QFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL--EYIKREKN---GALQAFFVKHINNWVTRA---- 483 (781)
Q Consensus 414 k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~--~y~~~~~~---~~~~~~l~k~l~r~l~r~---- 483 (781)
+.+-++.|||.+=.-.+.+.+.. .....+ |+++.+|-... +..+.... ..+..+..-..++++...
T Consensus 144 Eai~r~~Pdi~IDtMGY~fs~p~----~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 144 EAIIRFPPDIFIDTMGYPFSYPI----FRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHHhCCchheEecCCCcchhHH----HHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 44556899998866555544322 222334 99999984321 12221111 112222211223332222
Q ss_pred --cCCEEEEcChhhhhcC------CCcEEeeCCCCCCCCCCCcchhhHhhhCc-CCCCcEEEEEeeccCccCHHHHHHHH
Q 003992 484 --YCDKVLRLSAATQDLP------KSVICNVHGVNPKFLQIGEKVATDREQGQ-QAFSKGAYFLGKMVWAKGYRELIDLL 554 (781)
Q Consensus 484 --~aD~VI~vS~~~k~l~------~kivvi~nGVD~~~f~p~~~~~~r~~~Gi-~~~~~~ILfVGRL~~~KGid~LLeA~ 554 (781)
.+|.+++.|..+++-. ....++++..+.+.+. ...+. ....+.++++|.+.|+|++. +++.+
T Consensus 220 G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e~lk--------s~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~ 290 (465)
T KOG1387|consen 220 GSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTEDLK--------SKFGTEGERENQLLSLAQFRPEKNHK-ILQLF 290 (465)
T ss_pred cccceEEEecchhhHHHHHHHhhccceeEEcCCCCHHHHH--------HHhcccCCcceEEEEEeecCcccccH-HHHHH
Confidence 3899999999887622 1234455555543221 11111 22457889999999999999 55544
Q ss_pred HHhhcc------CCCcEEEEEeCCCCH------HHHHHHHHhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCCh
Q 003992 555 AKHKND------LDGFKLDVFGNGEDA------YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLC 618 (781)
Q Consensus 555 ~~L~~~------~p~i~LvIVG~Gp~~------~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfG 618 (781)
+....+ .++++|+++|+.... ..|+..++++.++ |.|.-.++..+ .+|..|.+-|+.-..|-||
T Consensus 291 Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFG 370 (465)
T KOG1387|consen 291 ALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFG 370 (465)
T ss_pred HHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcc
Confidence 433222 256999999985433 5567778888887 99988888776 8999999999999999999
Q ss_pred HHHHHHHHhCCcEEEeCCCCc--ceee---cCCccccCCCHHHHHHHHHHHHhCCCC-CCCh-----HHHHcCCHHHHHH
Q 003992 619 TATAEALAMGKFVICADHPSN--EFFR---SFPNCLTYKTSEDFVARVKEALANDPQ-PLTP-----EQRYNLSWEAATQ 687 (781)
Q Consensus 619 lviLEAMA~G~PVVaSd~gg~--g~L~---~~~ngv~~~D~eeLa~aI~~LL~d~~~-r~~m-----~~~~~fSWe~iae 687 (781)
+.++|+||+|+-.|+.+.||- ..+. +..+|+...+.++.++++.+++..... |..| ....+|+=....+
T Consensus 371 IsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~k 450 (465)
T KOG1387|consen 371 ISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDK 450 (465)
T ss_pred hhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988875 3332 346778889999999999999875544 4444 2345666666666
Q ss_pred HHHHHhh
Q 003992 688 RFIEYSE 694 (781)
Q Consensus 688 rll~~Ye 694 (781)
.+...++
T Consensus 451 d~~~~i~ 457 (465)
T KOG1387|consen 451 DWENPIC 457 (465)
T ss_pred hHhHHHH
Confidence 6665555
No 93
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.30 E-value=2.8e-10 Score=133.85 Aligned_cols=166 Identities=11% Similarity=0.010 Sum_probs=119.2
Q ss_pred CCCCcEEEEEeeccCccCHHHHHHHHHHhhc--cC--CCcEEEEEeCCCC--------HHHHHHHHHh--cCCcEEEc-C
Q 003992 529 QAFSKGAYFLGKMVWAKGYRELIDLLAKHKN--DL--DGFKLDVFGNGED--------AYEVQSAAKR--LDLNLNFQ-K 593 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~--~~--p~i~LvIVG~Gp~--------~~~L~~~a~~--lgL~V~Fl-G 593 (781)
.++.+.+++++|+..+||.++++.++.++.+ .. .++++++.|.|.. ...+..++++ ..-+|.|+ +
T Consensus 386 dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~ 465 (601)
T TIGR02094 386 DPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLEN 465 (601)
T ss_pred CCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 4567789999999999999999999988864 21 3599999999873 3455555655 22246665 4
Q ss_pred CCCCH-HHHHhcccEEEE-ccC-CCCChHHHHHHHHhCCcEEEeCCCCcceeecCCcccc--------------CCCHHH
Q 003992 594 GRDHA-DDSLHGYKVFIN-PSI-SDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLT--------------YKTSED 656 (781)
Q Consensus 594 ~v~~~-e~ly~~ADVfVl-PS~-~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~--------------~~D~ee 656 (781)
+.... ..++++||++++ ||+ +|..|++-+=||.-|.+.+++--|.+.+...+.||+. ..|.++
T Consensus 466 Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~~~nGf~f~~~~~~~~~~~~d~~da~~ 545 (601)
T TIGR02094 466 YDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYDGDNGWAIGDGEEYDDEEEQDRLDAEA 545 (601)
T ss_pred CCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCCCCcEEEECCCccccccccccCCCHHH
Confidence 43333 389999999999 999 9999999999999999999996543322112233322 267888
Q ss_pred HHHHHHHHH-----hCCCC-----CCCh---HHHH---cCCHHHHHHHHHHHhh
Q 003992 657 FVARVKEAL-----ANDPQ-----PLTP---EQRY---NLSWEAATQRFIEYSE 694 (781)
Q Consensus 657 La~aI~~LL-----~d~~~-----r~~m---~~~~---~fSWe~iaerll~~Ye 694 (781)
|.++|.+.+ +++.. ..+| .... .|||++++++|.+.|-
T Consensus 546 l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 546 LYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 999997755 23222 2333 2333 6999999999999885
No 94
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.26 E-value=3.2e-11 Score=139.88 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=131.8
Q ss_pred CcEEEEEe--eccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH---HHHHHHHHhc--C------------------
Q 003992 532 SKGAYFLG--KMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRL--D------------------ 586 (781)
Q Consensus 532 ~~~ILfVG--RL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~---~~L~~~a~~l--g------------------ 586 (781)
...+++++ |+ ++|.++.+|+++.++..+.|+++|.+.|.|.+. ..+++.++++ .
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 34678888 99 999999999999999999999999999988643 4554443333 1
Q ss_pred -----------CcEEEcCCCC--CHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecCCccccCCC
Q 003992 587 -----------LNLNFQKGRD--HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKT 653 (781)
Q Consensus 587 -----------L~V~FlG~v~--~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~~~D 653 (781)
..|.|.|..+ +....|..+.++|.+|..|+|+ +.+||++.|+|+| +.|...++.++.||...+|
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d 474 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDD 474 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCC
Confidence 2389999988 5559999999999999999999 9999999999999 7777888888999988899
Q ss_pred HHHHHHHHHHHHhCCCCCCCh-----HHHHcCCHHHHHHHHHHH
Q 003992 654 SEDFVARVKEALANDPQPLTP-----EQRYNLSWEAATQRFIEY 692 (781)
Q Consensus 654 ~eeLa~aI~~LL~d~~~r~~m-----~~~~~fSWe~iaerll~~ 692 (781)
..+|+++|..+|.++....++ +.+.+||-+.+.+++-+.
T Consensus 475 ~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 475 ISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 999999999999998776666 456778888777766543
No 95
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.1e-09 Score=113.10 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=163.6
Q ss_pred hcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHH--HHhhcch--hHHHHHHHHHHHHHHhcCCEEE
Q 003992 415 FIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYI--KREKNGA--LQAFFVKHINNWVTRAYCDKVL 489 (781)
Q Consensus 415 ~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~--~~~~~~~--~~~~l~k~l~r~l~r~~aD~VI 489 (781)
++-...+|+|.+++|..+..+.....+....+ +.+...|.. .|. .....+. ..-.+.+.+++++.+ .+|.-+
T Consensus 98 L~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy--~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk-~a~~nL 174 (444)
T KOG2941|consen 98 LFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNY--GYSLQLKLKLGFQHPLVRLVRWLEKYFGK-LADYNL 174 (444)
T ss_pred HHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhh--HHHHHHHhhcCCCCchHHHHHHHHHHhhc-ccccch
Confidence 34467899999999987766552222323334 677777743 232 1222221 122346777888777 799999
Q ss_pred EcChhhhh-cCC-----CcEEeeC-----CCCCC----CCC-------------CCcch----hhHhhh--C----cCCC
Q 003992 490 RLSAATQD-LPK-----SVICNVH-----GVNPK----FLQ-------------IGEKV----ATDREQ--G----QQAF 531 (781)
Q Consensus 490 ~vS~~~k~-l~~-----kivvi~n-----GVD~~----~f~-------------p~~~~----~~r~~~--G----i~~~ 531 (781)
|++.++++ +.. +..+.|. +.+.+ .|. +.++. ....+. | .+..
T Consensus 175 cVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~ 254 (444)
T KOG2941|consen 175 CVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPER 254 (444)
T ss_pred hhHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCC
Confidence 99999985 222 1223321 11100 010 00000 000111 1 0111
Q ss_pred CcEEEEEeeccCccCHHHHHHHHHHhhc-------cCCCcEEEEEeCCCCHHHHHHHHHhcCCc-EEEc-CCCC--CHHH
Q 003992 532 SKGAYFLGKMVWAKGYRELIDLLAKHKN-------DLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQ-KGRD--HADD 600 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGid~LLeA~~~L~~-------~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~-V~Fl-G~v~--~~e~ 600 (781)
..+++..-...+..++..|++|+....+ ..|++-++|-|.||.++...+.+++++++ |.+. .+.+ +...
T Consensus 255 pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ 334 (444)
T KOG2941|consen 255 PALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPK 334 (444)
T ss_pred CeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchh
Confidence 2233455556788999999999974321 24889999999999999999999999888 6553 3444 3348
Q ss_pred HHhcccE--EEEccCC-CCChHHHHHHHHhCCcEEEeCCCCcceee-cCCccccCCCHHHHHHHHHHHHhCCC
Q 003992 601 SLHGYKV--FINPSIS-DVLCTATAEALAMGKFVICADHPSNEFFR-SFPNCLTYKTSEDFVARVKEALANDP 669 (781)
Q Consensus 601 ly~~ADV--fVlPS~~-EgfGlviLEAMA~G~PVVaSd~gg~g~L~-~~~ngv~~~D~eeLa~aI~~LL~d~~ 669 (781)
+++.||+ .+++|.+ =-.||.++...-||+||+|-+.....+++ +++||+.++|.+++++++..++++=+
T Consensus 335 ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp 407 (444)
T KOG2941|consen 335 LLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNFP 407 (444)
T ss_pred HhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCC
Confidence 9999994 4555544 24799999999999999999999886655 58999999999999999999998533
No 96
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.05 E-value=2.2e-09 Score=123.52 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec------CCcccc-----CCCHHHHHHHHHHHHh--
Q 003992 600 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS------FPNCLT-----YKTSEDFVARVKEALA-- 666 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~------~~ngv~-----~~D~eeLa~aI~~LL~-- 666 (781)
+++..||+.|+||.||.||.+-+|+.|+|+|.|+||..|-|..+. ...|+. ..+.++.+++|.+.|.
T Consensus 465 dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f 544 (633)
T PF05693_consen 465 DFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKF 544 (633)
T ss_dssp HHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHH
T ss_pred HHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999987652221 112221 1556666666555542
Q ss_pred --CCC-CCCCh-----HHHHcCCHHHHHHHHHHHhhhcccc
Q 003992 667 --NDP-QPLTP-----EQRYNLSWEAATQRFIEYSELNRIL 699 (781)
Q Consensus 667 --d~~-~r~~m-----~~~~~fSWe~iaerll~~Ye~~~vl 699 (781)
-.. ++..+ ..+..++|+....-|.++|+ .++
T Consensus 545 ~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~--~AL 583 (633)
T PF05693_consen 545 CQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYD--LAL 583 (633)
T ss_dssp HT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHH--HHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHH
Confidence 211 11111 34568999999999999998 444
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.97 E-value=8.2e-08 Score=106.74 Aligned_cols=253 Identities=18% Similarity=0.130 Sum_probs=157.9
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
.+..+.+++++||+|+...++... |+...+...+ |++.+..+.... ..+++..+ +++.|
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~---P~~~Aa~~~~iPv~ihEqn~~~G----------------~ank~~~~-~a~~V 140 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSG---PVGIAAKLLGIPVIIHEQNAVPG----------------LANKILSK-FAKKV 140 (357)
T ss_pred HHHHHHHHHcCCCEEEecCCcccc---HHHHHHHhCCCCEEEEecCCCcc----------------hhHHHhHH-hhcee
Confidence 457788999999999987765432 2234455556 776554432221 23455555 67766
Q ss_pred EEcChhhhhcCC--CcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHH-HHhhccCCCcE
Q 003992 489 LRLSAATQDLPK--SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLL-AKHKNDLDGFK 565 (781)
Q Consensus 489 I~vS~~~k~l~~--kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~-~~L~~~~p~i~ 565 (781)
.+.-........ +..+.-|.|.+++.. ......+ ..+.. ++++|+.+|.=...+.+..++... ..+.+ +++
T Consensus 141 ~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~-~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~ 214 (357)
T COG0707 141 ASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEVR-KDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQ 214 (357)
T ss_pred eeccccccccCCCCceEEecCcccHHhhc-cchhhhh-hhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeE
Confidence 654443333332 355666777777765 2222222 12211 577888777644444444444333 33332 455
Q ss_pred EEEE-eCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc-----
Q 003992 566 LDVF-GNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----- 639 (781)
Q Consensus 566 LvIV-G~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----- 639 (781)
++.. |.+. .++++....+++. +...++.++..++|+.||++| +=.-++++.|..|+|+|+|--..+..
T Consensus 215 v~~~~G~~~-~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q 288 (357)
T COG0707 215 VIHQTGKND-LEELKSAYNELGV-VRVLPFIDDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQ 288 (357)
T ss_pred EEEEcCcch-HHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchH
Confidence 5544 4333 5777777777777 899999999999999999999 44568999999999999998765421
Q ss_pred ----ceeecCCccccC----CCHHHHHHHHHHHHhCCCCCCCh-HHHHcCCHHHHHHHHHHHhh
Q 003992 640 ----EFFRSFPNCLTY----KTSEDFVARVKEALANDPQPLTP-EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 640 ----g~L~~~~ngv~~----~D~eeLa~aI~~LL~d~~~r~~m-~~~~~fSWe~iaerll~~Ye 694 (781)
-++.....+... -+++.+.+.|.+++.+++....| +.+..+.-...++++.+...
T Consensus 289 ~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~ 352 (357)
T COG0707 289 EYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLL 352 (357)
T ss_pred HHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 122222222222 24789999999999998777777 55556656666666666655
No 98
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.97 E-value=1.2e-09 Score=105.64 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=87.8
Q ss_pred EEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccceee
Q 003992 314 IVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADFKIS 393 (781)
Q Consensus 314 I~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~~i~ 393 (781)
+++..+.|..||++...+..+.+|+++|+ +|+++++........... .... ..
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G~-~v~v~~~~~~~~~~~~~~--~~~~------------------------~~ 54 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRGH-EVTVVSPGVKDPIEEELV--KIFV------------------------KI 54 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SSTEE--EE---------------------------T
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCCC-EEEEEEcCCCccchhhcc--ceee------------------------ee
Confidence 56788888999999888899999999996 999998764321111000 0000 00
Q ss_pred ccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcCCEEEEEECCcHHHHHHhhcchhHHHHH
Q 003992 394 FYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFV 473 (781)
Q Consensus 394 ~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~pvV~ivHt~y~~y~~~~~~~~~~~~l~ 473 (781)
.++.. ............+.+.+++.+|||||++.+....+.. .... ..|++.++|+.+...............+.
T Consensus 55 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~---~~~~-~~~~v~~~H~~~~~~~~~~~~~~~~~~~~ 129 (177)
T PF13439_consen 55 PYPIR-KRFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIAL---LACR-KVPIVYTIHGPYFERRFLKSKLSPYSYLN 129 (177)
T ss_dssp T-SST-SS--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHH---HHHH-CSCEEEEE-HHH--HHTTTTSCCCHHHHH
T ss_pred ecccc-cccchhHHHHHHHHHHHHHcCCCeEEecccchhHHHH---Hhcc-CCCEEEEeCCCcccccccccccchhhhhh
Confidence 00000 0011112223457788888899999999865443322 1122 23999999986632100001111112222
Q ss_pred HHHHHHHHHhcCCEEEEcChhhhhc-------CCCcEEeeCCCCCCCC
Q 003992 474 KHINNWVTRAYCDKVLRLSAATQDL-------PKSVICNVHGVNPKFL 514 (781)
Q Consensus 474 k~l~r~l~r~~aD~VI~vS~~~k~l-------~~kivvi~nGVD~~~f 514 (781)
..+.+.+.+ .+|.+|++|+.+++. +.++.+|+||||.+.|
T Consensus 130 ~~~~~~~~~-~~~~ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 130 FRIERKLYK-KADRIIAVSESTKDELIKFGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HCTTHHHHC-CSSEEEESSHHHHHHHHHHT--SS-EEE----B-CCCH
T ss_pred hhhhhhHHh-cCCEEEEECHHHHHHHHHhCCcccCCEEEECCccHHHc
Confidence 222333333 699999999988761 2468999999998876
No 99
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.90 E-value=4.7e-07 Score=100.61 Aligned_cols=249 Identities=15% Similarity=0.052 Sum_probs=142.1
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
.+..+++++++||+||....+... +....++..+ |++ +|+.-. .. ...++.+.+ +++.|
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~---p~~~aa~~~~~p~~--i~e~n~-~~-------------g~~nr~~~~-~a~~v 140 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSV---PVVIGGWLNRVPVL--LHESDM-TP-------------GLANKIALR-FASKI 140 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhH---HHHHHHHHcCCCEE--EECCCC-Cc-------------cHHHHHHHH-hhCEE
Confidence 346678899999999987643321 1234455555 664 443311 10 122444455 68887
Q ss_pred EEcChhhhh-cC-CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHH-HHHHHhhccCCCcE
Q 003992 489 LRLSAATQD-LP-KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELI-DLLAKHKNDLDGFK 565 (781)
Q Consensus 489 I~vS~~~k~-l~-~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LL-eA~~~L~~~~p~i~ 565 (781)
++--+...+ ++ .++++.-+.|...+... .+...++.+++.++.++++.+|.=...+.+..++ +++..+.. +++
T Consensus 141 ~~~f~~~~~~~~~~k~~~tG~Pvr~~~~~~-~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~---~~~ 216 (352)
T PRK12446 141 FVTFEEAAKHLPKEKVIYTGSPVREEVLKG-NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL---KYQ 216 (352)
T ss_pred EEEccchhhhCCCCCeEEECCcCCcccccc-cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc---CcE
Confidence 664443333 34 34555555666666433 2333445677777788888777655556664433 34444432 355
Q ss_pred EEE-EeCCCCHHHHHHHHHhcCCcEEEcCCC-CCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC-----C
Q 003992 566 LDV-FGNGEDAYEVQSAAKRLDLNLNFQKGR-DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP-----S 638 (781)
Q Consensus 566 LvI-VG~Gp~~~~L~~~a~~lgL~V~FlG~v-~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g-----g 638 (781)
+++ +|... .+..... .. .+..+++. ++..++|+.||++|. -+-++++.|++++|+|.|....+ +
T Consensus 217 vv~~~G~~~-~~~~~~~---~~-~~~~~~f~~~~m~~~~~~adlvIs----r~G~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 217 IVHLCGKGN-LDDSLQN---KE-GYRQFEYVHGELPDILAITDFVIS----RAGSNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred EEEEeCCch-HHHHHhh---cC-CcEEecchhhhHHHHHHhCCEEEE----CCChhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 554 44332 2222211 11 23445777 567799999999994 44589999999999999988543 1
Q ss_pred c-----ceeecCCccccC----CCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHh
Q 003992 639 N-----EFFRSFPNCLTY----KTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYS 693 (781)
Q Consensus 639 ~-----g~L~~~~ngv~~----~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Y 693 (781)
. .++.....+... -+++.+.++|..+++|++.+. +....+.....++++.+..
T Consensus 288 ~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~--~~~~~~~~~~aa~~i~~~i 349 (352)
T PRK12446 288 DQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK--TALKKYNGKEAIQTIIDHI 349 (352)
T ss_pred hHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH--HHHHHcCCCCHHHHHHHHH
Confidence 1 112111111111 367899999999998765432 3344455556666665554
No 100
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.89 E-value=8.7e-09 Score=117.33 Aligned_cols=130 Identities=12% Similarity=0.207 Sum_probs=106.2
Q ss_pred cEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC-HHHHHHHHHhcCCcEEEcCCCC-CHHHHHhcccEEEE
Q 003992 533 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFIN 610 (781)
Q Consensus 533 ~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~-~~~L~~~a~~lgL~V~FlG~v~-~~e~ly~~ADVfVl 610 (781)
.-+++++. +.+|++++.|.++.|+++|.| |.|.+ ...|.++ .++.--+.|.|..+ +.+++|..||+++.
T Consensus 283 ~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLd 353 (438)
T TIGR02919 283 KQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLD 353 (438)
T ss_pred ccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEE
Confidence 45677772 999999999999999999999 88777 6788887 55632388888777 67799999999999
Q ss_pred ccCCCCChHHHHHHHHhCCcEEEeCCCCc-ceeecCCccccCCCHHHHHHHHHHHHhCCCCC
Q 003992 611 PSISDVLCTATAEALAMGKFVICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQP 671 (781)
Q Consensus 611 PS~~EgfGlviLEAMA~G~PVVaSd~gg~-g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r 671 (781)
.|..|++++++.||+..|+|||+.+.... ..++..+..+..+++++|+++|.++|.++...
T Consensus 354 in~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g~l~~~~~~~~m~~~i~~lL~d~~~~ 415 (438)
T TIGR02919 354 INHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEVDQLISKLKDLLNDPNQF 415 (438)
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecccCCcccccCCceecCCCHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999987622 22223333366799999999999999998643
No 101
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.88 E-value=1.5e-09 Score=96.58 Aligned_cols=85 Identities=26% Similarity=0.367 Sum_probs=73.3
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcc-eeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHc
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICADHPSNE-FFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP------EQRYN 679 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g-~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~ 679 (781)
++++|+..+++++.++|+||||+|||+.+.++.. ++..+..++.+.|++++.++|.++++|++.++++ ....+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999887664 4445567788889999999999999999998888 34568
Q ss_pred CCHHHHHHHHHH
Q 003992 680 LSWEAATQRFIE 691 (781)
Q Consensus 680 fSWe~iaerll~ 691 (781)
|+|+..++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999999874
No 102
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.85 E-value=1.2e-07 Score=114.18 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=113.9
Q ss_pred CCCCcEEEEEeeccCccCHHHHHHHHHHhhccC----CCcEEEEEeCCCCH--------HHHHHHHHhcCC--cEEEcCC
Q 003992 529 QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDL----DGFKLDVFGNGEDA--------YEVQSAAKRLDL--NLNFQKG 594 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~----p~i~LvIVG~Gp~~--------~~L~~~a~~lgL--~V~FlG~ 594 (781)
.++..+++|+.|+...|+.++++..+.++.+-. ..+++++.|.+... ..+.+++++... +|.|+-.
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~ 554 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLED 554 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcC
Confidence 345568899999999999999999988775411 35999999987632 234444442222 3777654
Q ss_pred CCCH--HHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCC--------CcceeecCCccc------cCCCHHH
Q 003992 595 RDHA--DDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHP--------SNEFFRSFPNCL------TYKTSED 656 (781)
Q Consensus 595 v~~~--e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~g--------g~g~L~~~~ngv------~~~D~ee 656 (781)
-+.. ..++++|||+++||+ +|..|++-+=||.-|.+-+++--| .|||..+..... ...|.++
T Consensus 555 Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~g~nGwaig~~~~~~~~~~~d~~da~~ 634 (778)
T cd04299 555 YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYDGENGWAIGDGDEYEDDEYQDAEEAEA 634 (778)
T ss_pred CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccCCCCceEeCCCccccChhhcchhhHHH
Confidence 4432 389999999999999 999999999999999999999664 445543321110 1145666
Q ss_pred HHHHHHHHHh----C------CCCCCCh---HHH---HcCCHHHHHHHHHHHhh
Q 003992 657 FVARVKEALA----N------DPQPLTP---EQR---YNLSWEAATQRFIEYSE 694 (781)
Q Consensus 657 La~aI~~LL~----d------~~~r~~m---~~~---~~fSWe~iaerll~~Ye 694 (781)
|.+.|++.+. + +....+| ... ..|||.+++++|++-|-
T Consensus 635 Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 635 LYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 7777755332 3 2223333 223 38999999999987665
No 103
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.82 E-value=5.3e-07 Score=97.08 Aligned_cols=255 Identities=15% Similarity=0.136 Sum_probs=148.1
Q ss_pred EEEEEeCccCCCcC-cccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCccc
Q 003992 311 NVAIVTTASLPWMT-GTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKAD 389 (781)
Q Consensus 311 rIaI~TtaflP~~~-G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~ 389 (781)
||+|.+++. |.+| |-...-+-.|..|.+.|+ +|++++.... . .+.+.+ +..|++
T Consensus 1 ~i~ir~Da~-~~iG~GHv~Rcl~LA~~l~~~g~-~v~f~~~~~~----------------~----~~~~~i-~~~g~~-- 55 (279)
T TIGR03590 1 KILFRADAS-SEIGLGHVMRCLTLARALHAQGA-EVAFACKPLP----------------G----DLIDLL-LSAGFP-- 55 (279)
T ss_pred CEEEEecCC-ccccccHHHHHHHHHHHHHHCCC-EEEEEeCCCC----------------H----HHHHHH-HHcCCe--
Confidence 689999988 4454 444334445777766775 9998864210 0 011122 122332
Q ss_pred ceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcCCEEEEEECCcHHHHHHhhcchhH
Q 003992 390 FKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQ 469 (781)
Q Consensus 390 ~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~pvV~ivHt~y~~y~~~~~~~~~~ 469 (781)
+..++.... ..-....+.+.+++.+||+|++.++.....+. ...+...+.+..+. ++...
T Consensus 56 --v~~~~~~~~----~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~---~~~k~~~~~l~~iD-D~~~~---------- 115 (279)
T TIGR03590 56 --VYELPDESS----RYDDALELINLLEEEKFDILIVDHYGLDADWE---KLIKEFGRKILVID-DLADR---------- 115 (279)
T ss_pred --EEEecCCCc----hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHH---HHHHHhCCeEEEEe-cCCCC----------
Confidence 222222110 00012346788888899999998864433332 12223344444443 32111
Q ss_pred HHHHHHHHHHHHHhcCCEEEEcChhhhh--cC---CCcEEeeCCCC-----CCCCCCCcchhhHhhhCcCCCCcEEEEEe
Q 003992 470 AFFVKHINNWVTRAYCDKVLRLSAATQD--LP---KSVICNVHGVN-----PKFLQIGEKVATDREQGQQAFSKGAYFLG 539 (781)
Q Consensus 470 ~~l~k~l~r~l~r~~aD~VI~vS~~~k~--l~---~kivvi~nGVD-----~~~f~p~~~~~~r~~~Gi~~~~~~ILfVG 539 (781)
..+||.+|-.+..... +. ........|++ ++|....... ..+ .+.+.+++++|
T Consensus 116 ------------~~~~D~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~-~~~----~~~~~iLi~~G 178 (279)
T TIGR03590 116 ------------PHDCDLLLDQNLGADASDYQGLVPANCRLLLGPSYALLREEFYQLATAN-KRR----KPLRRVLVSFG 178 (279)
T ss_pred ------------CcCCCEEEeCCCCcCHhHhcccCcCCCeEEecchHHhhhHHHHHhhHhh-hcc----cccCeEEEEeC
Confidence 1258988877664322 11 11223344664 2332211111 000 11245778999
Q ss_pred eccCccCHHHHHHHHHHhhccCCCcEE-EEEeCC-CCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCC
Q 003992 540 KMVWAKGYRELIDLLAKHKNDLDGFKL-DVFGNG-EDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVL 617 (781)
Q Consensus 540 RL~~~KGid~LLeA~~~L~~~~p~i~L-vIVG~G-p~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~Egf 617 (781)
.....+....+++++.++. +++++ +|+|.+ +..+++++.++... ++.+++++++..++|+.||++|.+ .
T Consensus 179 G~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is~-----~ 249 (279)
T TIGR03590 179 GADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIGA-----A 249 (279)
T ss_pred CcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEEC-----C
Confidence 8888776778888887653 23333 467765 55678888776543 588999999988999999999985 4
Q ss_pred hHHHHHHHHhCCcEEEeCC
Q 003992 618 CTATAEALAMGKFVICADH 636 (781)
Q Consensus 618 GlviLEAMA~G~PVVaSd~ 636 (781)
|.++.|++++|+|+|+...
T Consensus 250 G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 250 GSTSWERCCLGLPSLAICL 268 (279)
T ss_pred chHHHHHHHcCCCEEEEEe
Confidence 7999999999999998644
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=8.6e-07 Score=98.68 Aligned_cols=248 Identities=16% Similarity=0.091 Sum_probs=156.8
Q ss_pred hHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEEC-CcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 411 DTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHT-NYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 411 ~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt-~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
.+.++++..+||++++.+.+..... +.-+++.+ |.+.+--- .--+|.. | .++......++. ..|.|
T Consensus 114 ~v~rFl~~~~P~l~Ii~EtElWPnl---i~e~~~~~~p~~LvNaRLS~rS~~~-y------~k~~~~~~~~~~--~i~li 181 (419)
T COG1519 114 AVRRFLRKWRPKLLIIMETELWPNL---INELKRRGIPLVLVNARLSDRSFAR-Y------AKLKFLARLLFK--NIDLI 181 (419)
T ss_pred HHHHHHHhcCCCEEEEEeccccHHH---HHHHHHcCCCEEEEeeeechhhhHH-H------HHHHHHHHHHHH--hccee
Confidence 4678889999999988776543222 23445556 66544321 1111111 1 111222223332 48999
Q ss_pred EEcChhhhh-cC----CCcEEeeC---CCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhcc
Q 003992 489 LRLSAATQD-LP----KSVICNVH---GVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKND 560 (781)
Q Consensus 489 I~vS~~~k~-l~----~kivvi~n---GVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~ 560 (781)
++.|+..++ +. +++.+.-| .+.+...........+.+++.+ ++++++.+. +..--+.+++++..++++
T Consensus 182 ~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 182 LAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKKQ 257 (419)
T ss_pred eecCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHhh
Confidence 999996654 21 12121112 1111111111222344555522 677777776 445555699999999999
Q ss_pred CCCcEEEEEeCCCCH-HHHHHHHHhcCCcEE-EcCC----CC------C----HHHHHhcccE-EEEccCCCCChHHHHH
Q 003992 561 LDGFKLDVFGNGEDA-YEVQSAAKRLDLNLN-FQKG----RD------H----ADDSLHGYKV-FINPSISDVLCTATAE 623 (781)
Q Consensus 561 ~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~V~-FlG~----v~------~----~e~ly~~ADV-fVlPS~~EgfGlviLE 623 (781)
+||..+++|=.-|++ +.+++++++.|+.+. +-.. .+ | .-.+|..+|+ ||=-|..+-.|..++|
T Consensus 258 ~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LE 337 (419)
T COG1519 258 FPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLE 337 (419)
T ss_pred CCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhh
Confidence 999999999988887 889999999998843 3221 11 1 1178999994 5666777778999999
Q ss_pred HHHhCCcEEEeCCCCc-----ceeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh
Q 003992 624 ALAMGKFVICADHPSN-----EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 624 AMA~G~PVVaSd~gg~-----g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
+.++|+|||.-.+-.| ..+...+.++..+|.+.+++++..+++|++.+.+|
T Consensus 338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~~~r~~~ 393 (419)
T COG1519 338 PAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADEDKREAY 393 (419)
T ss_pred HHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999766544 22334455677788888888888888888777776
No 105
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.62 E-value=1.9e-06 Score=96.35 Aligned_cols=121 Identities=17% Similarity=0.048 Sum_probs=77.6
Q ss_pred CcEEEEEeeccC---ccCHHHHHHHHHHhhccCCCcE-EEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccE
Q 003992 532 SKGAYFLGKMVW---AKGYRELIDLLAKHKNDLDGFK-LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKV 607 (781)
Q Consensus 532 ~~~ILfVGRL~~---~KGid~LLeA~~~L~~~~p~i~-LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADV 607 (781)
..+++..|.+.. .+-+..+++++..+ +.+ ++.+|.++... ....-+|.+.++++.. .+|..||+
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~~~------~~~~~~v~~~~~~p~~-~ll~~~d~ 307 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGLGA------EDLPDNVRVVDFVPHD-WLLPRCAA 307 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCccccc------cCCCCceEEeCCCCHH-HHhhhhhe
Confidence 345567777643 34455566666543 334 44556544322 1222338999998755 59999999
Q ss_pred EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eeecCCcccc--C--CCHHHHHHHHHHHHhCC
Q 003992 608 FINPSISDVLCTATAEALAMGKFVICADHPSN----E-FFRSFPNCLT--Y--KTSEDFVARVKEALAND 668 (781)
Q Consensus 608 fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~~~ngv~--~--~D~eeLa~aI~~LL~d~ 668 (781)
|| +-|...++.||+++|+|+|.....+. . .+...+.|+. . -+++++.++|.++++++
T Consensus 308 ~I----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~ 373 (401)
T cd03784 308 VV----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP 373 (401)
T ss_pred ee----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH
Confidence 99 44556899999999999999976643 1 1111122222 2 27899999999999854
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.52 E-value=1.7e-06 Score=97.69 Aligned_cols=183 Identities=18% Similarity=0.063 Sum_probs=116.3
Q ss_pred HHHHHhcCCEEEEcChhhhhcC-C---CcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEE-eec--cCccCHHHH
Q 003992 478 NWVTRAYCDKVLRLSAATQDLP-K---SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFL-GKM--VWAKGYREL 550 (781)
Q Consensus 478 r~l~r~~aD~VI~vS~~~k~l~-~---kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfV-GRL--~~~KGid~L 550 (781)
+++.+ .|+.|++..+.+.+.. + ++.++-|.+-...... .+. ++.++.+.++.+ |.- ...+++..+
T Consensus 155 ~l~~~-~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~-~~~------~l~~~~~~lllLpGSR~ae~~~~lp~~ 226 (396)
T TIGR03492 155 LMRSR-RCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPP-ERK------PLLTGRFRIALLPGSRPPEAYRNLKLL 226 (396)
T ss_pred Hhhch-hhCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCccc-ccc------ccCCCCCEEEEECCCCHHHHHccHHHH
Confidence 33434 7999998888665532 2 3333334432222111 110 333444555444 433 234678899
Q ss_pred HHHHHHhhccCCCcEEEEEe-CCCCHHHHHHHHHhcCCc----------------EEEcCCCCCHHHHHhcccEEEEccC
Q 003992 551 IDLLAKHKNDLDGFKLDVFG-NGEDAYEVQSAAKRLDLN----------------LNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 551 LeA~~~L~~~~p~i~LvIVG-~Gp~~~~L~~~a~~lgL~----------------V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
++++..+.++ +++.+++.- ++.+.+.+++...+.+.. +.+..+.++..++|+.||++|..|
T Consensus 227 l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS- 304 (396)
T TIGR03492 227 LRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA- 304 (396)
T ss_pred HHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-
Confidence 9999999766 777776654 455667777766654542 455566666668999999999887
Q ss_pred CCCChHHHHHHHHhCCcEEEeCCCCc----ceee------cCCccccCCCHHHHHHHHHHHHhCCCCCCCh
Q 003992 614 SDVLCTATAEALAMGKFVICADHPSN----EFFR------SFPNCLTYKTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 614 ~EgfGlviLEAMA~G~PVVaSd~gg~----g~L~------~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
|.+..|++++|+|+|....++. .++. +....+...+++.+++++.++++|++.+.+|
T Consensus 305 ----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~ 371 (396)
T TIGR03492 305 ----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERC 371 (396)
T ss_pred ----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 6777999999999999874433 1111 1111133477899999999999988766555
No 107
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.50 E-value=6.8e-07 Score=84.77 Aligned_cols=149 Identities=16% Similarity=0.122 Sum_probs=74.1
Q ss_pred CcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccceeeccCCccc-cc
Q 003992 324 TGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADFKISFYPGKFS-KE 402 (781)
Q Consensus 324 ~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~~i~~yP~~~~-~~ 402 (781)
||++......+..|++.|+ +|++++|.-......... .++ .+...|.... ..
T Consensus 1 GG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~----------------------~~~----~~~~~~~~~~~~~ 53 (160)
T PF13579_consen 1 GGIERYVRELARALAARGH-EVTVVTPQPDPEDDEEEE----------------------DGV----RVHRLPLPRRPWP 53 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT--EEEEEEE---GGG-SEEE----------------------TTE----EEEEE--S-SSSG
T ss_pred CCHHHHHHHHHHHHHHCCC-EEEEEecCCCCccccccc----------------------CCc----eEEeccCCccchh
Confidence 5777777788999999996 999998743221110000 000 1111110000 01
Q ss_pred ccccCchHhHHhhc--ccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHH
Q 003992 403 RRSIIPAGDTSQFI--PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNW 479 (781)
Q Consensus 403 ~~sil~v~~L~k~I--~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~ 479 (781)
.........+.+++ .+.+||+||++.+. .+++. ....+..+ |+|.++|+...... ......+++.++++
T Consensus 54 ~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~~~--~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~~~~~~~~ 125 (160)
T PF13579_consen 54 LRLLRFLRRLRRLLAARRERPDVVHAHSPT-AGLVA--ALARRRRGIPLVVTVHGTLFRRG-----SRWKRRLYRWLERR 125 (160)
T ss_dssp GGHCCHHHHHHHHCHHCT---SEEEEEHHH-HHHHH--HHHHHHHT--EEEE-SS-T-----------HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhccCCeEEEecccc-hhHHH--HHHHHccCCcEEEEECCCchhhc-----cchhhHHHHHHHHH
Confidence 11112234577777 88999999999843 33333 22332556 99999997542211 12334445566666
Q ss_pred HHHhcCCEEEEcChhhhhc-------CCCcEEeeCC
Q 003992 480 VTRAYCDKVLRLSAATQDL-------PKSVICNVHG 508 (781)
Q Consensus 480 l~r~~aD~VI~vS~~~k~l-------~~kivvi~nG 508 (781)
+.+ .||.|+++|+.+++. +.++.+++||
T Consensus 126 ~~~-~ad~vi~~S~~~~~~l~~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 126 LLR-RADRVIVVSEAMRRYLRRYGVPPDRIHVIPNG 160 (160)
T ss_dssp HHH-H-SEEEESSHHHHHHHHHH---GGGEEE----
T ss_pred HHh-cCCEEEECCHHHHHHHHHhCCCCCcEEEeCcC
Confidence 666 699999999987662 2367888887
No 108
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.45 E-value=3.2e-06 Score=97.44 Aligned_cols=261 Identities=11% Similarity=0.037 Sum_probs=130.1
Q ss_pred CCcEEEECCCchhHHHHHHHHHHhhcC--CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhh-h
Q 003992 420 DADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT-Q 496 (781)
Q Consensus 420 kPDVIhl~~P~~l~~~~~g~~~akk~~--pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~-k 496 (781)
.-|+|.+|+...+ ..+ ..+.++.. ++....|+.++..-..... +....+ + +-+. .||.|=.-+..- +
T Consensus 141 ~~D~VWVhDYhL~-llP--~~LR~~~~~~~IgfFlHiPFPs~e~fr~l-P~r~ei---L-~glL--~aDlIgFqt~~~~~ 210 (474)
T PF00982_consen 141 PGDLVWVHDYHLM-LLP--QMLRERGPDARIGFFLHIPFPSSEIFRCL-PWREEI---L-RGLL--GADLIGFQTFEYAR 210 (474)
T ss_dssp TT-EEEEESGGGT-THH--HHHHHTT--SEEEEEE-S----HHHHTTS-TTHHHH---H-HHHT--TSSEEEESSHHHHH
T ss_pred CCCEEEEeCCcHH-HHH--HHHHhhcCCceEeeEEecCCCCHHHHhhC-CcHHHH---H-HHhh--cCCEEEEecHHHHH
Confidence 6789999986543 332 22333333 6666778888654322111 111111 1 1111 367766666522 2
Q ss_pred h-------cC------C--------C---cEEeeCCCCCCCCCCC--------cchhhHhhhCcCCC-CcEEEEEeeccC
Q 003992 497 D-------LP------K--------S---VICNVHGVNPKFLQIG--------EKVATDREQGQQAF-SKGAYFLGKMVW 543 (781)
Q Consensus 497 ~-------l~------~--------k---ivvi~nGVD~~~f~p~--------~~~~~r~~~Gi~~~-~~~ILfVGRL~~ 543 (781)
+ +. . + +.+.+-|||++.+... .....+..++ + .++|+-|.|++.
T Consensus 211 nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~---~~~~ii~gvDrld~ 287 (474)
T PF00982_consen 211 NFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK---GKRKIIVGVDRLDY 287 (474)
T ss_dssp HHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT---T-SEEEEEE--B-G
T ss_pred HHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC---CCcEEEEEeccchh
Confidence 2 11 1 1 1233458887665321 1122334443 4 488999999999
Q ss_pred ccCHHHHHHHHHHhhccCCC----cEEEEEeC-----CCC----HHHHHHHHHh----cCC-c---EEEcC-CCCCHH--
Q 003992 544 AKGYRELIDLLAKHKNDLDG----FKLDVFGN-----GED----AYEVQSAAKR----LDL-N---LNFQK-GRDHAD-- 599 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~----i~LvIVG~-----Gp~----~~~L~~~a~~----lgL-~---V~FlG-~v~~~e-- 599 (781)
.||+..=+.|+.++.+++|+ +.|+-++. .+. ..++.+++.+ .|- . |.|+. .++..+
T Consensus 288 ~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~ 367 (474)
T PF00982_consen 288 TKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELL 367 (474)
T ss_dssp GG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHH
T ss_pred hcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHH
Confidence 99999999999999888765 66665653 111 1334444332 221 1 55554 455555
Q ss_pred HHHhcccEEEEccCCCCChHHHHHHHHhCCc----EEEeCCCCc-ceeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh
Q 003992 600 DSLHGYKVFINPSISDVLCTATAEALAMGKF----VICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfGlviLEAMA~G~P----VVaSd~gg~-g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
++|+.||+++.+|..+|+-++..|+.||... +|.|...|. ..+..+.-.+.+.|.+++|++|.++|+-+...++.
T Consensus 368 aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~al~VNP~d~~~~A~ai~~AL~M~~~Er~~ 447 (474)
T PF00982_consen 368 ALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEAALLVNPWDIEEVADAIHEALTMPPEERKE 447 (474)
T ss_dssp HHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS-EEE-TT-HHHHHHHHHHHHT--HHHHHH
T ss_pred HHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCccEEECCCChHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999876 666655544 33321223366699999999999999865432211
Q ss_pred ------HHHHcCCHHHHHHHHHHHh
Q 003992 675 ------EQRYNLSWEAATQRFIEYS 693 (781)
Q Consensus 675 ------~~~~~fSWe~iaerll~~Y 693 (781)
+....++-..=++.+++..
T Consensus 448 r~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 448 RHARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhHhCCHHHHHHHHHHHh
Confidence 3445555555556665543
No 109
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.40 E-value=7.2e-06 Score=94.00 Aligned_cols=189 Identities=10% Similarity=0.046 Sum_probs=128.2
Q ss_pred EEeeCCCCCCCCCCCc-------chhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC----cEEEEEeC
Q 003992 503 ICNVHGVNPKFLQIGE-------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGN 571 (781)
Q Consensus 503 vvi~nGVD~~~f~p~~-------~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~----i~LvIVG~ 571 (781)
.+.|-|||++.|.... ....+..++ ++++|+-|.|++.-||+..=++|++++.+.+|+ +.|+-+..
T Consensus 222 ~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~ 298 (474)
T PRK10117 222 EVYPIGIEPDEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAP 298 (474)
T ss_pred EEEECeEcHHHHHHHhhchHHHHHHHHHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcC
Confidence 3455699976653211 111233333 577899999999999999999999999888875 56665542
Q ss_pred C-----CCH----HHHHHHHHh----cCC-c---EEEc-CCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCC--
Q 003992 572 G-----EDA----YEVQSAAKR----LDL-N---LNFQ-KGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK-- 629 (781)
Q Consensus 572 G-----p~~----~~L~~~a~~----lgL-~---V~Fl-G~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~-- 629 (781)
- +.. .++++++.+ .|- . |.|+ ..++..+ ++|+.|||++.+|..+|+-++.-|+.||-.
T Consensus 299 psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~ 378 (474)
T PRK10117 299 TSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA 378 (474)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCC
Confidence 1 111 333333333 121 1 6654 3455555 899999999999999999999999999976
Q ss_pred ---cEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCCCCC--Ch----HHHHcCCHHHHHHHHHHHhh
Q 003992 630 ---FVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPL--TP----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 630 ---PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~--~m----~~~~~fSWe~iaerll~~Ye 694 (781)
.+|.|...|......+.-.+.+.|.++++++|.++|+-+..-+ ++ +....++-..-++.+++...
T Consensus 379 ~~GvLILSefAGaA~~L~~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 379 NPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLK 452 (474)
T ss_pred CCccEEEecccchHHHhCCCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Confidence 3677766555322233333666999999999999998764322 22 44566677777778887766
No 110
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.30 E-value=1.1e-05 Score=90.29 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=143.7
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-C--EEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-H--VVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 486 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-p--vV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD 486 (781)
..+.+.+...+||++++-+...+++-. .+.+++.+ + ++..+-...+.|- .. .+ +.+.+ ++|
T Consensus 72 ~~~~~~~~~~~pd~vIlID~pgFNlrl--ak~lk~~~~~~~viyYI~PqvWAWr---------~~---R~-~~i~~-~~D 135 (373)
T PF02684_consen 72 RKLVERIKEEKPDVVILIDYPGFNLRL--AKKLKKRGIPIKVIYYISPQVWAWR---------PG---RA-KKIKK-YVD 135 (373)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccHHH--HHHHHHhCCCceEEEEECCceeeeC---------cc---HH-HHHHH-HHh
Confidence 357778889999999988876666544 44555555 4 5444432222221 11 11 11223 689
Q ss_pred EEEEcChhhhhcCCC----cEEeeCCC-CCCCCCCCcchhhHhhhCcCCCCcEE-EEEee-cc-CccCHHHHHHHHHHhh
Q 003992 487 KVLRLSAATQDLPKS----VICNVHGV-NPKFLQIGEKVATDREQGQQAFSKGA-YFLGK-MV-WAKGYRELIDLLAKHK 558 (781)
Q Consensus 487 ~VI~vS~~~k~l~~k----ivvi~nGV-D~~~f~p~~~~~~r~~~Gi~~~~~~I-LfVGR-L~-~~KGid~LLeA~~~L~ 558 (781)
.++|+=++-.++.++ ...+-|.+ |.-.... .....++.+ ++++.++| +.-|. -. -.+.+..+++++.++.
T Consensus 136 ~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~-~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~ 213 (373)
T PF02684_consen 136 HLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEP-DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLK 213 (373)
T ss_pred heeECCcccHHHHhccCCCeEEECCcchhhhccCC-CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998877665432 22232322 2111111 122333444 56666655 56663 22 2466688899999999
Q ss_pred ccCCCcEEEEEeCCCCHHH-HHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 559 NDLDGFKLDVFGNGEDAYE-VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 559 ~~~p~i~LvIVG~Gp~~~~-L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+++|++++++......... +++.....+..+...-...+..+.|+.||+.+..| |++++|++.+|+|.|..-..
T Consensus 214 ~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 214 KQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKV 288 (373)
T ss_pred HhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcC
Confidence 9999999998875544444 55555554444222222334557999999999998 99999999999999877443
Q ss_pred Cc------------cee-----ecCCcc----ccC-CCHHHHHHHHHHHHhCCCC
Q 003992 638 SN------------EFF-----RSFPNC----LTY-KTSEDFVARVKEALANDPQ 670 (781)
Q Consensus 638 g~------------g~L-----~~~~ng----v~~-~D~eeLa~aI~~LL~d~~~ 670 (781)
+. .++ ..+... +.. -+++.+++++..++.|++.
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~ 343 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEK 343 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHH
Confidence 11 110 001111 222 6899999999999998765
No 111
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.26 E-value=2.3e-05 Score=87.58 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=136.9
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++.+++||+|+++.-...... +...+...+ |++ .+|..-..+. .. .-.++.+....+|..
T Consensus 83 ~~~~~~~~~~~Pd~vlv~GD~~~~la--~alaA~~~~IPv~-HveaG~rs~~------~~-----eE~~r~~i~~la~l~ 148 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVLGDRFEMLA--AAIAAALLNIPIA-HIHGGEVTEG------AI-----DESIRHAITKLSHLH 148 (365)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHhCCcEE-EEECCccCCC------Cc-----hHHHHHHHHHHHhhc
Confidence 46888899999999999863322221 245566666 665 3443211110 00 011222222246777
Q ss_pred EEcChhhhh-c------CCCcEEeeC-CCCCCC-CCCCcchhhHhhhCcCCCCcEE-EEEee-----ccCccCHHHHHHH
Q 003992 489 LRLSAATQD-L------PKSVICNVH-GVNPKF-LQIGEKVATDREQGQQAFSKGA-YFLGK-----MVWAKGYRELIDL 553 (781)
Q Consensus 489 I~vS~~~k~-l------~~kivvi~n-GVD~~~-f~p~~~~~~r~~~Gi~~~~~~I-LfVGR-----L~~~KGid~LLeA 553 (781)
++.++..++ + +.+++++-| ++|.-. ..........+++|++.+.+++ +.+-+ ....+.+..++++
T Consensus 149 f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~ 228 (365)
T TIGR03568 149 FVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKA 228 (365)
T ss_pred cCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHH
Confidence 777875544 3 234444433 555211 1111223445567765443443 33333 2223445566666
Q ss_pred HHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcC--Cc-EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhC
Q 003992 554 LAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLD--LN-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMG 628 (781)
Q Consensus 554 ~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lg--L~-V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G 628 (781)
+..+ ..++.++.-..++....+.+.+.++. .. |.+++..+..+ .+++.|+++|--|. | .+.||.++|
T Consensus 229 L~~~---~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----g-gi~EA~~lg 300 (365)
T TIGR03568 229 LDEL---NKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSS----S-GIIEAPSFG 300 (365)
T ss_pred HHHh---ccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcCh----h-HHHhhhhcC
Confidence 6554 22343322223343333333333221 23 99999988877 89999999995552 2 238999999
Q ss_pred CcEEEeCCCCccee-ecCCccc-cCCCHHHHHHHHHHHHhCCCCCCChHH-HHcCCHHHHHHHHHHH
Q 003992 629 KFVICADHPSNEFF-RSFPNCL-TYKTSEDFVARVKEALANDPQPLTPEQ-RYNLSWEAATQRFIEY 692 (781)
Q Consensus 629 ~PVVaSd~gg~g~L-~~~~ngv-~~~D~eeLa~aI~~LL~d~~~r~~m~~-~~~fSWe~iaerll~~ 692 (781)
+|||+-. ..... ..+.|.+ ...|++++.+++.+++ ++..+..+.. ...|-...+++|.+++
T Consensus 301 ~Pvv~l~--~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~-~~~~~~~~~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 301 VPTINIG--TRQKGRLRADSVIDVDPDKEEIVKAIEKLL-DPAFKKSLKNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred CCEEeec--CCchhhhhcCeEEEeCCCHHHHHHHHHHHh-ChHHHHHHhhCCCCCCCChHHHHHHHh
Confidence 9999653 22221 2244444 3368999999999954 4332222322 2346556666766553
No 112
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.20 E-value=2.5e-05 Score=95.88 Aligned_cols=190 Identities=12% Similarity=-0.031 Sum_probs=121.9
Q ss_pred EeeCCCCCCCCCCC----c----chhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCc----EEEEEeC
Q 003992 504 CNVHGVNPKFLQIG----E----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGF----KLDVFGN 571 (781)
Q Consensus 504 vi~nGVD~~~f~p~----~----~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i----~LvIVG~ 571 (781)
+.+-|||+..+... . ....+.+++ ..++++|+-|.|++.-||+..=+.|++++.+++|++ .|+-+..
T Consensus 304 ~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~ 382 (854)
T PLN02205 304 ILPVGIHMGQLQSVLSLPETEAKVKELIKQFC-DQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIAN 382 (854)
T ss_pred EEeCeEcHHHHHHHhcChhHHHHHHHHHHHhc-cCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 34568887655221 1 111233332 124688999999999999999999999999888864 5555542
Q ss_pred -----CCCHHHH----HHHHHh----cCC----cEEEc-CCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCc-
Q 003992 572 -----GEDAYEV----QSAAKR----LDL----NLNFQ-KGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKF- 630 (781)
Q Consensus 572 -----Gp~~~~L----~~~a~~----lgL----~V~Fl-G~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~P- 630 (781)
+++..++ .+.+.+ .|- .|.|+ ..++..+ ++|+.|||++.++..+|+-++..|+.||...
T Consensus 383 psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~ 462 (854)
T PLN02205 383 PARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGN 462 (854)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCc
Confidence 3333333 333332 221 16665 4456555 8999999999999999999999999998652
Q ss_pred ------------------EEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCCCCCC--Ch----HHHHcCCHHHHH
Q 003992 631 ------------------VICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQPL--TP----EQRYNLSWEAAT 686 (781)
Q Consensus 631 ------------------VVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~--~m----~~~~~fSWe~ia 686 (781)
+|.|...|+.....+.-.+.+.|.++++++|.++|+.+..-+ ++ .....++-..-+
T Consensus 463 ~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~ 542 (854)
T PLN02205 463 EKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWA 542 (854)
T ss_pred cccccccccccccCCCCceEeeeccchhHHhCcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 444444333211122222566999999999999998764322 22 334455555556
Q ss_pred HHHHHHhh
Q 003992 687 QRFIEYSE 694 (781)
Q Consensus 687 erll~~Ye 694 (781)
+.+++..+
T Consensus 543 ~~fl~~l~ 550 (854)
T PLN02205 543 RSFLQDLE 550 (854)
T ss_pred HHHHHHHH
Confidence 66665544
No 113
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.16 E-value=0.0012 Score=73.90 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=76.8
Q ss_pred EEEEEeeccCccC--HHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEc
Q 003992 534 GAYFLGKMVWAKG--YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 611 (781)
Q Consensus 534 ~ILfVGRL~~~KG--id~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlP 611 (781)
+++..|.+...+. +..+++++. +.+...++.+|.+.....+.. ..-+|.+.+++++. ++|..||++|..
T Consensus 228 v~vs~Gs~~~~~~~~~~~~~~al~----~~~~~~i~~~g~~~~~~~~~~----~~~~v~~~~~~p~~-~ll~~~~~~I~h 298 (392)
T TIGR01426 228 VLISLGTVFNNQPSFYRTCVEAFR----DLDWHVVLSVGRGVDPADLGE----LPPNVEVRQWVPQL-EILKKADAFITH 298 (392)
T ss_pred EEEecCccCCCCHHHHHHHHHHHh----cCCCeEEEEECCCCChhHhcc----CCCCeEEeCCCCHH-HHHhhCCEEEEC
Confidence 4456777643322 223334433 223233445676655443322 22348888998875 699999999965
Q ss_pred cCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eeecCCcc--ccC--CCHHHHHHHHHHHHhCCCCCCCh
Q 003992 612 SISDVLCTATAEALAMGKFVICADHPSN----E-FFRSFPNC--LTY--KTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 612 S~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~~~ng--v~~--~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
+ -..+++|||++|+|+|+....+. . .+...+.+ +.. -++++++++|.++++|+..+.++
T Consensus 299 g----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~ 366 (392)
T TIGR01426 299 G----GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERL 366 (392)
T ss_pred C----CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 4 23579999999999999765432 1 11111112 221 36789999999999987644433
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.15 E-value=1.4e-05 Score=91.28 Aligned_cols=171 Identities=12% Similarity=0.001 Sum_probs=110.5
Q ss_pred hhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCC-HHHHHHHHHhcCCc---EEEcCCCC
Q 003992 521 ATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLN---LNFQKGRD 596 (781)
Q Consensus 521 ~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~-~~~L~~~a~~lgL~---V~FlG~v~ 596 (781)
..|..+|++++..++... -...|=-...+++|.++.+..|+.+|++...+.. .+.+++.+++.|+. |.|.+..+
T Consensus 274 ~~R~~~gLp~d~vvF~~f--n~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~ 351 (468)
T PF13844_consen 274 TTRAQYGLPEDAVVFGSF--NNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAP 351 (468)
T ss_dssp EETGGGT--SSSEEEEE---S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---
T ss_pred cCHHHcCCCCCceEEEec--CccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCC
Confidence 347789998775433333 3457888899999999999999999988765443 37788888889987 99998777
Q ss_pred CHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc------ceeec-CCccccCCCHHHHHHHHHHHHhC
Q 003992 597 HAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------EFFRS-FPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 597 ~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~------g~L~~-~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
..+ ..|+.+||++=+-.+ +-+++.+||+.||+|||+-..... +++.. +-.-+...|.+++.+.-.++.+|
T Consensus 352 ~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 352 REEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATD 430 (468)
T ss_dssp HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCC
Confidence 655 678889999977433 447999999999999999754321 22211 21225568899999999999999
Q ss_pred CCCCCCh-----H---HHHcCCHHHHHHHHHHHhh
Q 003992 668 DPQPLTP-----E---QRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 668 ~~~r~~m-----~---~~~~fSWe~iaerll~~Ye 694 (781)
++.+..+ + ...-|+-...++.+.++|+
T Consensus 431 ~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 431 PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 8876655 1 1234788888999999987
No 115
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.14 E-value=0.00024 Score=78.60 Aligned_cols=218 Identities=13% Similarity=0.025 Sum_probs=124.5
Q ss_pred hHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCE
Q 003992 409 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDK 487 (781)
Q Consensus 409 v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~ 487 (781)
...+.+++++++|||++....... .+.+..++ |.|....+...... ++.... .||.
T Consensus 72 ~~~l~~~~~~~~pDv~is~~s~~a------~~va~~lgiP~I~f~D~e~a~~~----------------~~Lt~P-la~~ 128 (335)
T PF04007_consen 72 QYKLLKLIKKFKPDVAISFGSPEA------ARVAFGLGIPSIVFNDTEHAIAQ----------------NRLTLP-LADV 128 (335)
T ss_pred HHHHHHHHHhhCCCEEEecCcHHH------HHHHHHhCCCeEEEecCchhhcc----------------ceeehh-cCCe
Confidence 446888899999999997653322 23455566 88888776432211 112122 6899
Q ss_pred EEEcChhh----hhcCCC-cEEeeCCCCC----CCCCCCcchhhHhhhCcCCCCcEEEEEeeccCc-----cC-HHHHHH
Q 003992 488 VLRLSAAT----QDLPKS-VICNVHGVNP----KFLQIGEKVATDREQGQQAFSKGAYFLGKMVWA-----KG-YRELID 552 (781)
Q Consensus 488 VI~vS~~~----k~l~~k-ivvi~nGVD~----~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~-----KG-id~LLe 552 (781)
|+++.-.- +++-.+ .+.-++|++. .-|.|. ....+++|+.+++.+++ |.... +| -..+-+
T Consensus 129 i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd--~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~~i~~~ 203 (335)
T PF04007_consen 129 IITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPD--PEVLKELGLDDEPYIVV---RPEAWKASYDNGKKSILPE 203 (335)
T ss_pred eECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCC--hhHHHHcCCCCCCEEEE---EeccccCeeecCccchHHH
Confidence 99887633 333333 2334889863 224443 34566788665433332 22211 11 122445
Q ss_pred HHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEE
Q 003992 553 LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI 632 (781)
Q Consensus 553 A~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVV 632 (781)
++..+.+.. +. ++++-..++..++ .++.+ +.+....-+.-+++..||++|-- .|+...||...|+|.|
T Consensus 204 ii~~L~~~~-~~-vV~ipr~~~~~~~---~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig~-----ggTMa~EAA~LGtPaI 271 (335)
T PF04007_consen 204 IIEELEKYG-RN-VVIIPRYEDQREL---FEKYG--VIIPPEPVDGLDLLYYADLVIGG-----GGTMAREAALLGTPAI 271 (335)
T ss_pred HHHHHHhhC-ce-EEEecCCcchhhH---HhccC--ccccCCCCCHHHHHHhcCEEEeC-----CcHHHHHHHHhCCCEE
Confidence 555655542 33 5666544443332 33333 45544433444799999999943 3688999999999999
Q ss_pred EeCCCCc----ceeecCCccccCCCHHHHHHHHHHHHh
Q 003992 633 CADHPSN----EFFRSFPNCLTYKTSEDFVARVKEALA 666 (781)
Q Consensus 633 aSd~gg~----g~L~~~~ngv~~~D~eeLa~aI~~LL~ 666 (781)
.+..|.. .++...+-.+-..|++++.+.+.+.+.
T Consensus 272 s~~~g~~~~vd~~L~~~Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 272 SCFPGKLLAVDKYLIEKGLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred EecCCcchhHHHHHHHCCCeEecCCHHHHHHHHHHhhh
Confidence 9855432 122221111344899999987766554
No 116
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.08 E-value=6.7e-05 Score=81.17 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=104.8
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHh---cC
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA---YC 485 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~---~a 485 (781)
..+.+.+++++||+|++...... ...++..+ |++.+.|......... ...........+.++.... .+
T Consensus 84 ~~~~~~l~~~~pDlVIsD~~~~~------~~aa~~~giP~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T PF13528_consen 84 RREIRWLREFRPDLVISDFYPLA------ALAARRAGIPVIVISNQYWFLHPNF--WLPWDQDFGRLIERYIDRYHFPPA 155 (318)
T ss_pred HHHHHHHHhcCCCEEEEcChHHH------HHHHHhcCCCEEEEEehHHcccccC--CcchhhhHHHHHHHhhhhccCCcc
Confidence 34677888999999999854332 23456667 9988877543211000 0011111222233333221 24
Q ss_pred CEEEEcChhhhhcCC-CcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCc
Q 003992 486 DKVLRLSAATQDLPK-SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGF 564 (781)
Q Consensus 486 D~VI~vS~~~k~l~~-kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i 564 (781)
+..+..+-....... +...+...+....... . ..+.+.+++++|..... .++++++.+ ++.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------~-~~~~~~iLv~~gg~~~~----~~~~~l~~~----~~~ 217 (318)
T PF13528_consen 156 DRRLALSFYPPLPPFFRVPFVGPIIRPEIREL---------P-PEDEPKILVYFGGGGPG----DLIEALKAL----PDY 217 (318)
T ss_pred cceecCCccccccccccccccCchhccccccc---------C-CCCCCEEEEEeCCCcHH----HHHHHHHhC----CCC
Confidence 444444433110000 1111111111111100 0 01235577899987766 666666653 678
Q ss_pred EEEEEeCCCCHHHHHHHHHhcCCcEEEcCCC-CCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC
Q 003992 565 KLDVFGNGEDAYEVQSAAKRLDLNLNFQKGR-DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 638 (781)
Q Consensus 565 ~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v-~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg 638 (781)
.++++|.+... ...-+|.+.++. ++..++|..||++|.-+ .-.++.||+++|+|+|+-...+
T Consensus 218 ~~~v~g~~~~~--------~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~----G~~t~~Ea~~~g~P~l~ip~~~ 280 (318)
T PF13528_consen 218 QFIVFGPNAAD--------PRPGNIHVRPFSTPDFAELMAAADLVISKG----GYTTISEALALGKPALVIPRPG 280 (318)
T ss_pred eEEEEcCCccc--------ccCCCEEEeecChHHHHHHHHhCCEEEECC----CHHHHHHHHHcCCCEEEEeCCC
Confidence 89999765211 112338888876 66668999999999554 3355999999999999987753
No 117
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=2.6e-05 Score=86.33 Aligned_cols=242 Identities=16% Similarity=0.132 Sum_probs=144.6
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcCCEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVL 489 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI 489 (781)
+++.+.+...+||++++-+...++.-. ....++.+|.+-++|-.-++-+ .|--+.. ..+.+ ++|.++
T Consensus 75 ~~~~~~i~~~kpD~~i~IDsPdFnl~v--ak~lrk~~p~i~iihYV~PsVW---------AWr~~Ra-~~i~~-~~D~lL 141 (381)
T COG0763 75 RELVRYILANKPDVLILIDSPDFNLRV--AKKLRKAGPKIKIIHYVSPSVW---------AWRPKRA-VKIAK-YVDHLL 141 (381)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCchHH--HHHHHHhCCCCCeEEEECccee---------eechhhH-HHHHH-HhhHee
Confidence 456777778999999887654444332 3344444444444442211111 1110111 11233 799999
Q ss_pred EcChhhhhcCCC----cEEeeCCC-CCCCCCCCcchhhHhhhCcCCCCcEE-EEEeec-c-CccCHHHHHHHHHHhhccC
Q 003992 490 RLSAATQDLPKS----VICNVHGV-NPKFLQIGEKVATDREQGQQAFSKGA-YFLGKM-V-WAKGYRELIDLLAKHKNDL 561 (781)
Q Consensus 490 ~vS~~~k~l~~k----ivvi~nGV-D~~~f~p~~~~~~r~~~Gi~~~~~~I-LfVGRL-~-~~KGid~LLeA~~~L~~~~ 561 (781)
++=+.-.++.++ .+.+-|.. |.-.+.+ ++...++++|++.+.+++ +..|.= + -.+....+++++.+++.++
T Consensus 142 ailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~-~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~ 220 (381)
T COG0763 142 AILPFEPAFYDKFGLPCTYVGHPLADEIPLLP-DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY 220 (381)
T ss_pred eecCCCHHHHHhcCCCeEEeCChhhhhccccc-cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC
Confidence 998866664332 23333433 3222222 344578889888776665 566642 2 2466778899999999899
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcC---CcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeC-CC
Q 003992 562 DGFKLDVFGNGEDAYEVQSAAKRLD---LNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD-HP 637 (781)
Q Consensus 562 p~i~LvIVG~Gp~~~~L~~~a~~lg---L~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd-~g 637 (781)
|+.++++--..+..+.++....+.. +++.+.+. ...+.|..||+.+..| |++++|+|.+|+|.|.+- ..
T Consensus 221 ~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~ 293 (381)
T COG0763 221 PDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG--EKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVK 293 (381)
T ss_pred CCceEEEecCcHHHHHHHHHHhhccccCceEEecCc--hHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEecc
Confidence 9999998876665444444433222 22343332 2336899999999888 999999999999999873 32
Q ss_pred Cc-----------ce-----eecCCccc-----cCCCHHHHHHHHHHHHhCCCCCC
Q 003992 638 SN-----------EF-----FRSFPNCL-----TYKTSEDFVARVKEALANDPQPL 672 (781)
Q Consensus 638 g~-----------g~-----L~~~~ngv-----~~~D~eeLa~aI~~LL~d~~~r~ 672 (781)
.. .+ +..+...+ ..-.++.+++++..++.|...+.
T Consensus 294 ~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 294 PITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 10 11 00000001 11468999999999999984433
No 118
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.0005 Score=79.01 Aligned_cols=188 Identities=11% Similarity=0.117 Sum_probs=123.9
Q ss_pred EeeCCCCCCCCCCCc--------chhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCC----cEEEEEeC
Q 003992 504 CNVHGVNPKFLQIGE--------KVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGN 571 (781)
Q Consensus 504 vi~nGVD~~~f~p~~--------~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~----i~LvIVG~ 571 (781)
..|-|||+..|.... ....++.++ .+.++|+.+.|++.-||+..=+.|+.++..++|. +.++-++.
T Consensus 248 a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~ 325 (486)
T COG0380 248 AFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAP 325 (486)
T ss_pred EEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecC
Confidence 345699976653221 111223333 2378889999999999999999999999988775 56666664
Q ss_pred CCCH---------HHHHHHHHh----cC---Cc-EEEcCC-CCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCC--
Q 003992 572 GEDA---------YEVQSAAKR----LD---LN-LNFQKG-RDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK-- 629 (781)
Q Consensus 572 Gp~~---------~~L~~~a~~----lg---L~-V~FlG~-v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~-- 629 (781)
.... ..++..+.+ .| .. |.|+-. .+..+ ++|..||+++.+|..||+.++..|+.||--
T Consensus 326 pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~ 405 (486)
T COG0380 326 PSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDK 405 (486)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCC
Confidence 3211 222233322 12 11 555543 45444 899999999999999999999999999844
Q ss_pred --cEEEeCCCCc-ceeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 630 --FVICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 630 --PVVaSd~gg~-g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
+.|-|.-.|. ..+ .+.-.+.+.|.++++++|.++|+-+.+.++. .....++-..-+..|++...
T Consensus 406 ~G~LiLSeFaGaa~~L-~~AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la 478 (486)
T COG0380 406 PGVLILSEFAGAASEL-RDALIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLA 478 (486)
T ss_pred CCcEEEeccccchhhh-ccCEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666665544 232 2222256699999999999999865443322 44556666666777766655
No 119
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.97 E-value=0.00072 Score=78.99 Aligned_cols=126 Identities=14% Similarity=0.042 Sum_probs=78.7
Q ss_pred cEEEEEeeccC-----ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHH--hcc
Q 003992 533 KGAYFLGKMVW-----AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSL--HGY 605 (781)
Q Consensus 533 ~~ILfVGRL~~-----~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly--~~A 605 (781)
.+.+..|.+.. .+-+..+++|++++ + .++++..+++... ....-+|.+.++.+..+ ++ ..+
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~~~------~~~p~Nv~i~~w~Pq~~-lL~hp~v 365 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEVEA------INLPANVLTQKWFPQRA-VLKHKNV 365 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCcCc------ccCCCceEEecCCCHHH-HhcCCCC
Confidence 44456677643 23345666666654 3 4666655443221 11223488899988765 77 458
Q ss_pred cEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----ce-eecCCcc--ccC--CCHHHHHHHHHHHHhCCCCCCCh
Q 003992 606 KVFINPSISDVLCTATAEALAMGKFVICADHPSN----EF-FRSFPNC--LTY--KTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 606 DVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g~-L~~~~ng--v~~--~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
++|| +-|...++.||+.+|+|+|+....+. .. +...+.| +.. -+.+++.++|.++++|+..+++.
T Consensus 366 ~~fI----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a 439 (507)
T PHA03392 366 KAFV----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNL 439 (507)
T ss_pred CEEE----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHH
Confidence 9999 55667899999999999999866532 10 0011111 222 36789999999999987655444
No 120
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00015 Score=83.38 Aligned_cols=175 Identities=14% Similarity=0.053 Sum_probs=125.3
Q ss_pred hhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH---HHHHHHHHhcCCc---EEEcC
Q 003992 520 VATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA---YEVQSAAKRLDLN---LNFQK 593 (781)
Q Consensus 520 ~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~---~~L~~~a~~lgL~---V~FlG 593 (781)
...|...|++++. ++|.+--...|-...+++.+-++.+.-|+-.|++.|.|++. +.++.++++.|+. ++|++
T Consensus 418 ~~sR~~lglp~~a--vVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p 495 (620)
T COG3914 418 PPSRAQLGLPEDA--VVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLP 495 (620)
T ss_pred CcchhhcCCCCCe--EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecC
Confidence 3457788988764 44444446678888899999888888999999999998775 7889999999988 99999
Q ss_pred CCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC----cc--eeec-CCccccCCCHHHHHHHHHHH
Q 003992 594 GRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE--FFRS-FPNCLTYKTSEDFVARVKEA 664 (781)
Q Consensus 594 ~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg----~g--~L~~-~~ngv~~~D~eeLa~aI~~L 664 (781)
..++++ +.|.-||+|+=+--| +-.++.+||+-||+|||+--... +| ++.. +-.-....+.++.++.-..+
T Consensus 496 ~~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~ 574 (620)
T COG3914 496 PAPNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAF 574 (620)
T ss_pred CCCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHh
Confidence 999987 889999999865544 33688999999999999752210 11 1111 11113346666666666666
Q ss_pred HhCCCCCCCh--------HHHHcCCHHHHHHHHHHHhhhcccc
Q 003992 665 LANDPQPLTP--------EQRYNLSWEAATQRFIEYSELNRIL 699 (781)
Q Consensus 665 L~d~~~r~~m--------~~~~~fSWe~iaerll~~Ye~~~vl 699 (781)
-+|...+++. ....-|+-+..++++..+|. ++.
T Consensus 575 g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~--~M~ 615 (620)
T COG3914 575 GSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYW--GMW 615 (620)
T ss_pred cccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHH--HHH
Confidence 6666555444 11124788999999999998 554
No 121
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.0024 Score=71.09 Aligned_cols=265 Identities=14% Similarity=0.070 Sum_probs=150.7
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+++.+.+||+|.+|.--.-... +..++...+ |+. .+-.-...+..+ +-.-+++.+...-+|.-
T Consensus 82 ~~~~~vl~~~kPD~VlVhGDT~t~lA--~alaa~~~~IpV~-HvEAGlRt~~~~---------~PEE~NR~l~~~~S~~h 149 (383)
T COG0381 82 EGLSKVLEEEKPDLVLVHGDTNTTLA--GALAAFYLKIPVG-HVEAGLRTGDLY---------FPEEINRRLTSHLSDLH 149 (383)
T ss_pred HHHHHHHHhhCCCEEEEeCCcchHHH--HHHHHHHhCCceE-EEecccccCCCC---------CcHHHHHHHHHHhhhhh
Confidence 35788889999999999864433332 244555555 553 322111001000 00122333333357888
Q ss_pred EEcChhhhh-c-----CC-CcEEeeCCC-CC-CCC--CCCcchhhHhh-hCcCCCCcEEE-EEeecc-CccCHHHHHHHH
Q 003992 489 LRLSAATQD-L-----PK-SVICNVHGV-NP-KFL--QIGEKVATDRE-QGQQAFSKGAY-FLGKMV-WAKGYRELIDLL 554 (781)
Q Consensus 489 I~vS~~~k~-l-----~~-kivvi~nGV-D~-~~f--~p~~~~~~r~~-~Gi~~~~~~IL-fVGRL~-~~KGid~LLeA~ 554 (781)
++++...++ + +. ++.++-|-+ |- ... ........... ++. .++++++ ..=|-. ..+++..+++++
T Consensus 150 fapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~~~~~~i~~al 228 (383)
T COG0381 150 FAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVGEPLEEICEAL 228 (383)
T ss_pred cCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhcccccHHHHHHHH
Confidence 999986554 2 22 355554533 31 111 01111111111 222 2233443 433433 238999999999
Q ss_pred HHhhccCCCcEEEEEeCCCCHHHHHHHH-HhcCCc--EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCC
Q 003992 555 AKHKNDLDGFKLDVFGNGEDAYEVQSAA-KRLDLN--LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGK 629 (781)
Q Consensus 555 ~~L~~~~p~i~LvIVG~Gp~~~~L~~~a-~~lgL~--V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~ 629 (781)
.++.++++++.++.--. +. ..+++.. ..++-. |.++.+.+..+ .++..|-+.+-=| |...=||-..|+
T Consensus 229 ~~i~~~~~~~~viyp~H-~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~ 301 (383)
T COG0381 229 REIAEEYPDVIVIYPVH-PR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGK 301 (383)
T ss_pred HHHHHhCCCceEEEeCC-CC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCC
Confidence 99999887876655432 22 4444444 334433 88888888777 6777776666444 556789999999
Q ss_pred cEEEeCCCCc-cee-ecCCccccCCCHHHHHHHHHHHHhCCCCCCChH-HHHcCCHHHHHHHHHHHhh
Q 003992 630 FVICADHPSN-EFF-RSFPNCLTYKTSEDFVARVKEALANDPQPLTPE-QRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 630 PVVaSd~gg~-g~L-~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~-~~~~fSWe~iaerll~~Ye 694 (781)
||++-+...- ++. ..+.+-+.-.+.+.+.+++..++++++..++|. ....|.=..+.+|++++..
T Consensus 302 Pvl~lR~~TERPE~v~agt~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~ 369 (383)
T COG0381 302 PVLVLRDTTERPEGVEAGTNILVGTDEENILDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILL 369 (383)
T ss_pred cEEeeccCCCCccceecCceEEeCccHHHHHHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHHH
Confidence 9999866422 222 223333444788999999999999998888883 3344544445555555443
No 122
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.83 E-value=0.00021 Score=83.91 Aligned_cols=199 Identities=11% Similarity=0.036 Sum_probs=119.2
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC---CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN---HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 486 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~---pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD 486 (781)
.++.+.+.+.+||++++-+...+++-. .+.+++.+ |++..+-.....|- . ..+ +.+.+ ++|
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrL--AK~lkk~Gi~ipviyYVsPqVWAWR---------~---~Ri-kki~k-~vD 363 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLL--IKKLRKRGYKGKIVHYVCPSIWAWR---------P---KRK-TILEK-YLD 363 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHH--HHHHHhcCCCCCEEEEECccceeeC---------c---chH-HHHHH-Hhh
Confidence 356778888999999997766666644 44555555 66544433322221 0 111 12233 689
Q ss_pred EEEEcChhhhhcCCC----cEEeeCCC-CCCCCCCCcchhhHhhhCcCCCCcEE-EEEee-cc-CccCHHHHHHHHH--H
Q 003992 487 KVLRLSAATQDLPKS----VICNVHGV-NPKFLQIGEKVATDREQGQQAFSKGA-YFLGK-MV-WAKGYRELIDLLA--K 556 (781)
Q Consensus 487 ~VI~vS~~~k~l~~k----ivvi~nGV-D~~~f~p~~~~~~r~~~Gi~~~~~~I-LfVGR-L~-~~KGid~LLeA~~--~ 556 (781)
.++|+=+.-.++.++ .+.+-|.. |.-.. ...+...++++|++++.+++ +.-|. -. -.+.+..+++++. .
T Consensus 364 ~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 364 LLLLILPFEQNLFKDSPLRTVYLGHPLVETISS-FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred hheecCccCHHHHHhcCCCeEEECCcHHhhccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998877664432 22233332 32111 11233456778886665555 56663 22 2466677888887 4
Q ss_pred hhccCCCcEEEEEeCCCC-HHHHHHHHHhcC-CcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 557 HKNDLDGFKLDVFGNGED-AYEVQSAAKRLD-LNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 557 L~~~~p~i~LvIVG~Gp~-~~~L~~~a~~lg-L~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
+.+ +.++++...-+. .+.+++..+..+ +.+.+.... +..++|++||+.+..| |++.+|++.+|+|.|..
T Consensus 443 l~~---~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 443 LAS---THQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCALAKC-----GTIVLETALNQTPTIVT 513 (608)
T ss_pred hcc---CeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEE
Confidence 433 577766543222 356666665444 244444221 2347999999999999 99999999999999886
No 123
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.77 E-value=0.0003 Score=66.57 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=77.4
Q ss_pred EEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCcccc
Q 003992 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (781)
Q Consensus 311 rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~~~~ 390 (781)
||++++..+-+ ..+..+.+|.+.|+ +|+++++.-.. .. ++ ...++
T Consensus 1 KIl~i~~~~~~-------~~~~~~~~L~~~g~-~V~ii~~~~~~-~~---~~-------------------~~~~i---- 45 (139)
T PF13477_consen 1 KILLIGNTPST-------FIYNLAKELKKRGY-DVHIITPRNDY-EK---YE-------------------IIEGI---- 45 (139)
T ss_pred CEEEEecCcHH-------HHHHHHHHHHHCCC-EEEEEEcCCCc-hh---hh-------------------HhCCe----
Confidence 68899887622 24566889999986 99999873111 00 00 00011
Q ss_pred eeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC--CEEEEEECCcHHHHHHhhcchh
Q 003992 391 KISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGAL 468 (781)
Q Consensus 391 ~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~--pvV~ivHt~y~~y~~~~~~~~~ 468 (781)
.+...+........ .+.+..+.+++++.+|||||++.+...+.++ ..+++..+ |++.+.|.... +. .. .
T Consensus 46 ~~~~~~~~~k~~~~-~~~~~~l~k~ik~~~~DvIh~h~~~~~~~~~--~l~~~~~~~~~~i~~~hg~~~-~~---~~--~ 116 (139)
T PF13477_consen 46 KVIRLPSPRKSPLN-YIKYFRLRKIIKKEKPDVIHCHTPSPYGLFA--MLAKKLLKNKKVIYTVHGSDF-YN---SS--K 116 (139)
T ss_pred EEEEecCCCCccHH-HHHHHHHHHHhccCCCCEEEEecCChHHHHH--HHHHHHcCCCCEEEEecCCee-ec---CC--c
Confidence 11111100000111 1123468899999999999999987654444 33444444 89999985321 11 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEcC
Q 003992 469 QAFFVKHINNWVTRAYCDKVLRLS 492 (781)
Q Consensus 469 ~~~l~k~l~r~l~r~~aD~VI~vS 492 (781)
...+.+.+.+++.+ .+|.|++.|
T Consensus 117 ~~~~~~~~~~~~~k-~~~~ii~~~ 139 (139)
T PF13477_consen 117 KKKLKKFIIKFAFK-RADKIIVQS 139 (139)
T ss_pred hHHHHHHHHHHHHH-hCCEEEEcC
Confidence 12245556666666 799999876
No 124
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.67 E-value=6.9e-05 Score=83.34 Aligned_cols=265 Identities=12% Similarity=0.089 Sum_probs=131.7
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
..+.+.+.+.+||+|+++.--.-. ++ +...+...+ | |+.+|.-.-.+-... +.... .++.+....+|..
T Consensus 57 ~~~~~~~~~~~Pd~Vlv~GD~~~~-la-~alaA~~~~ip-v~HieaGlRs~d~~~--g~~de-----~~R~~i~~la~lh 126 (346)
T PF02350_consen 57 IELADVLEREKPDAVLVLGDRNEA-LA-AALAAFYLNIP-VAHIEAGLRSGDRTE--GMPDE-----INRHAIDKLAHLH 126 (346)
T ss_dssp HHHHHHHHHHT-SEEEEETTSHHH-HH-HHHHHHHTT-E-EEEES-----S-TTS--STTHH-----HHHHHHHHH-SEE
T ss_pred HHHHHHHHhcCCCEEEEEcCCchH-HH-HHHHHHHhCCC-EEEecCCCCccccCC--CCchh-----hhhhhhhhhhhhh
Confidence 357788889999999987643322 22 244555666 6 445543211111110 11111 1222222268999
Q ss_pred EEcChhhhh-c------CCCcEEeeC-CCCCCCCCC-Ccchhh-HhhhCcCCCCcEEEEEe-ecc--C-ccCHHHHHHHH
Q 003992 489 LRLSAATQD-L------PKSVICNVH-GVNPKFLQI-GEKVAT-DREQGQQAFSKGAYFLG-KMV--W-AKGYRELIDLL 554 (781)
Q Consensus 489 I~vS~~~k~-l------~~kivvi~n-GVD~~~f~p-~~~~~~-r~~~Gi~~~~~~ILfVG-RL~--~-~KGid~LLeA~ 554 (781)
++.++..++ + +.++.++-| ++|.-.... ...... .........++.+++.. +.. . ......+.+++
T Consensus 127 f~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l 206 (346)
T PF02350_consen 127 FAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEAL 206 (346)
T ss_dssp EESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHH
Confidence 999995544 2 223444433 444211100 000000 01110012345554333 222 2 34567888888
Q ss_pred HHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHH-HHHHhCC
Q 003992 555 AKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATA-EALAMGK 629 (781)
Q Consensus 555 ~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviL-EAMA~G~ 629 (781)
..+.+. +++.+++.....+ ...+.+..+++. ++.+.......+ .+++.|+++|--| | .+. ||..+|+
T Consensus 207 ~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~ 278 (346)
T PF02350_consen 207 KALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGK 278 (346)
T ss_dssp HHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT-
T ss_pred HHHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCC
Confidence 888776 7888888775323 355555555552 588888887766 8999999999766 5 566 9999999
Q ss_pred cEEEeCCCCc-ce-eecCCccccCCCHHHHHHHHHHHHhCCCCCCChH-HHHcCCHHHHHHHHHHH
Q 003992 630 FVICADHPSN-EF-FRSFPNCLTYKTSEDFVARVKEALANDPQPLTPE-QRYNLSWEAATQRFIEY 692 (781)
Q Consensus 630 PVVaSd~gg~-g~-L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~-~~~~fSWe~iaerll~~ 692 (781)
|||.-+..+. .. ...+.+.+...|++++.++|.+++.+.....++. ....|-=..++++..++
T Consensus 279 P~v~iR~~geRqe~r~~~~nvlv~~~~~~I~~ai~~~l~~~~~~~~~~~~~npYgdG~as~rI~~~ 344 (346)
T PF02350_consen 279 PVVNIRDSGERQEGRERGSNVLVGTDPEAIIQAIEKALSDKDFYRKLKNRPNPYGDGNASERIVEI 344 (346)
T ss_dssp -EEECSSS-S-HHHHHTTSEEEETSSHHHHHHHHHHHHH-HHHHHHHHCS--TT-SS-HHHHHHHH
T ss_pred eEEEecCCCCCHHHHhhcceEEeCCCHHHHHHHHHHHHhChHHHHhhccCCCCCCCCcHHHHHHHh
Confidence 9999854433 11 1223344544899999999999998732222221 12234434555555544
No 125
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.61 E-value=0.003 Score=69.15 Aligned_cols=190 Identities=12% Similarity=0.093 Sum_probs=95.6
Q ss_pred HhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHh--cCC
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA--YCD 486 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~--~aD 486 (781)
....+++++++||+|+....... ...++..+ |++.+.|.++..|. . .. ........+++..+ .++
T Consensus 83 ~~~~~~l~~~~pDlVi~d~~~~~------~~aA~~~~iP~i~i~~q~~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~ 150 (321)
T TIGR00661 83 RREINIIREYNPDLIISDFEYST------VVAAKLLKIPVICISNQNYTRYP----L-KT-DLIVYPTMAALRIFNERCE 150 (321)
T ss_pred HHHHHHHHhcCCCEEEECCchHH------HHHHHhcCCCEEEEecchhhcCC----c-cc-chhHHHHHHHHHHhccccc
Confidence 34567888999999999854433 23456677 99888775543221 1 11 11111112222221 145
Q ss_pred EEEEcChhhhhcCCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCc-EEEEEeeccCccCHHHHHHHHHHhhccCCCcE
Q 003992 487 KVLRLSAATQDLPKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSK-GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFK 565 (781)
Q Consensus 487 ~VI~vS~~~k~l~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~-~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~ 565 (781)
.++..+..... ...+.-+. ..-.+..+.... ... +...+ +++|.|. -+...+++++.++ +++.
T Consensus 151 ~~~~~~~~~~~-----~~~p~~~~-~~~~~~~~~~~~-~~~-~~~~~~iLv~~g~----~~~~~l~~~l~~~----~~~~ 214 (321)
T TIGR00661 151 RFIVPDYPFPY-----TICPKIIK-NMEGPLIRYDVD-DVD-NYGEDYILVYIGF----EYRYKILELLGKI----ANVK 214 (321)
T ss_pred eEeeecCCCCC-----CCCccccc-cCCCcccchhhh-ccc-cCCCCcEEEECCc----CCHHHHHHHHHhC----CCeE
Confidence 54433321110 00010000 000010000000 011 11223 4445433 3456677776554 4555
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCcEEEcCCCC-CHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC
Q 003992 566 LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS 638 (781)
Q Consensus 566 LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~-~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg 638 (781)
+++ |+ ++.. . ..+.-++.+.++.+ +..++|..||++|.-+ -..++.||+++|+|+|....++
T Consensus 215 ~i~-~~-~~~~--~---~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~----G~~t~~Ea~~~g~P~l~ip~~~ 277 (321)
T TIGR00661 215 FVC-YS-YEVA--K---NSYNENVEIRRITTDNFKELIKNAELVITHG----GFSLISEALSLGKPLIVIPDLG 277 (321)
T ss_pred EEE-eC-CCCC--c---cccCCCEEEEECChHHHHHHHHhCCEEEECC----ChHHHHHHHHcCCCEEEEcCCC
Confidence 443 43 2211 0 11222478888875 5558999999999765 2357999999999999987764
No 126
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=97.54 E-value=0.0026 Score=64.79 Aligned_cols=171 Identities=19% Similarity=0.140 Sum_probs=93.4
Q ss_pred CCEEEEEeCc-cCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccccccccccCCchhhHHHHHHHHHhhCCc
Q 003992 309 KRNVAIVTTA-SLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFK 387 (781)
Q Consensus 309 ~~rIaI~Tta-flP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~p~i~f~~p~~qe~yir~~l~~rig~~ 387 (781)
++||+|+-|- .|..-+|.++..-..+.+|.+.|+ +|+|.+..-....+...|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~-~v~Vyc~~~~~~~~~~~y-------------------------- 53 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGI-DVTVYCRSDYYPYKEFEY-------------------------- 53 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCc-eEEEEEccCCCCCCCccc--------------------------
Confidence 4799999986 555566766655667888988885 999886421110111111
Q ss_pred ccceeeccCCcccccccccCc-hHhHHhhc---c--cCCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHH
Q 003992 388 ADFKISFYPGKFSKERRSIIP-AGDTSQFI---P--SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYI 460 (781)
Q Consensus 388 ~~~~i~~yP~~~~~~~~sil~-v~~L~k~I---~--~~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~ 460 (781)
.+.++...|........++.. +..+...+ + +.+.||+++.....-+++.+-.+..++.+ +++..+|. .+|.
T Consensus 54 ~gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DG--lEWk 131 (185)
T PF09314_consen 54 NGVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDG--LEWK 131 (185)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCc--chhh
Confidence 112222223221111222211 11223333 2 24688999876542122221122223333 55555443 4564
Q ss_pred HHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhhhhc-----C-CCcEEeeCCCC
Q 003992 461 KREKNGALQAFFVKHINNWVTRAYCDKVLRLSAATQDL-----P-KSVICNVHGVN 510 (781)
Q Consensus 461 ~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~l-----~-~kivvi~nGVD 510 (781)
+ .+.+.....+++.-++++.+ ++|.+|+.|..++++ . .+.+.|++|.|
T Consensus 132 R-~KW~~~~k~~lk~~E~~avk-~ad~lIaDs~~I~~y~~~~y~~~~s~~IaYGad 185 (185)
T PF09314_consen 132 R-AKWGRPAKKYLKFSEKLAVK-YADRLIADSKGIQDYIKERYGRKKSTFIAYGAD 185 (185)
T ss_pred h-hhcCHHHHHHHHHHHHHHHH-hCCEEEEcCHHHHHHHHHHcCCCCcEEecCCCC
Confidence 4 34444556667777888888 999999999988873 3 45677888865
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.014 Score=64.87 Aligned_cols=261 Identities=12% Similarity=0.105 Sum_probs=143.0
Q ss_pred HHhhcccCCCcEEEECCCc--hhHH-HHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHH---hc
Q 003992 412 TSQFIPSKDADIAILEEPE--HLNW-YHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTR---AY 484 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P~--~l~~-~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r---~~ 484 (781)
....++.++||+|+..... +-.+ ...-..|+++.+ |+++.+-.. +-..... .......+.+ ..
T Consensus 69 ~~~~i~~fk~d~iv~~~~~~~~~~~~~~~~~a~l~~~~l~~~~w~te~-p~~~~~~---------~~~~~~~~~~~~l~~ 138 (373)
T COG4641 69 SLLYIREFKPDIIVNMSGDDQPDEESTIDLWAWLKRKCLPVIVWYTED-PYDTDIF---------SQVAEEQLARRPLFI 138 (373)
T ss_pred HHHHHHhcCCcEEEEecccccccceehHHHHHHhhcCCcceEEEEecc-chhhhhh---------hhhhHHHhhccccch
Confidence 4567889999999875432 0001 111134666666 744443222 1111111 0111111111 01
Q ss_pred CCEEEEcChhh-hh-c-----CCCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHh
Q 003992 485 CDKVLRLSAAT-QD-L-----PKSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKH 557 (781)
Q Consensus 485 aD~VI~vS~~~-k~-l-----~~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L 557 (781)
.|.|++.++.. .+ + .......+.++|...+.+...... ..-.+.++|.-.+. -++.+-+.+..-
T Consensus 139 fd~v~~~g~~l~~~~yyq~~~~~~~~~~~~a~d~~~~~~i~~da~--------~~~dL~~ign~~pD-r~e~~ke~~~~p 209 (373)
T COG4641 139 FDNVLSFGGGLVANKYYQEGGARNCYYLPWAVDDSLFHPIPPDAS--------YDVDLNLIGNPYPD-RVEEIKEFFVEP 209 (373)
T ss_pred hhhhhhccchHHHHHHHHhhcccceeccCccCCchhcccCCcccc--------ceeeeEEecCCCcc-HHHHHHHHhhcc
Confidence 34456656544 22 1 223355667888777665432111 12246788876554 122222222211
Q ss_pred hccC-CCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCC---HHHHHhcccEEEEccCC---CC---ChHHHHHHHHh
Q 003992 558 KNDL-DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDH---ADDSLHGYKVFINPSIS---DV---LCTATAEALAM 627 (781)
Q Consensus 558 ~~~~-p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~---~e~ly~~ADVfVlPS~~---Eg---fGlviLEAMA~ 627 (781)
..+. .+-++.+.|..-.. .+....-.. ++.+.|+... ....++..|++++-++. ++ +.+-+.|+|+|
T Consensus 210 s~kl~v~rr~~~~g~~y~~-~~~~~~~~~--~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc 286 (373)
T COG4641 210 SFKLMVDRRFYVLGPRYPD-DIWGRTWEP--NVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGC 286 (373)
T ss_pred chhhhccceeeecCCccch-hhhcccccc--hhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhc
Confidence 1111 12345555644111 111111111 1555565554 22677888888876653 33 37889999999
Q ss_pred CCcEEEeCCCCc-ceeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh------HHHHcCCHHHHHHHHHHHhh
Q 003992 628 GKFVICADHPSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP------EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 628 G~PVVaSd~gg~-g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m------~~~~~fSWe~iaerll~~Ye 694 (781)
|.|.|+....+. +++..+..-+.+.|.+++.+++++++..++.|+++ +....++.+.-+..+++...
T Consensus 287 ~~~liT~~~~~~e~~f~pgk~~iv~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~ 360 (373)
T COG4641 287 GGFLITDYWKDLEKFFKPGKDIIVYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIA 360 (373)
T ss_pred CCccccccHHHHHHhcCCchheEEecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence 999998877655 45555666677899999999999999999998888 34456888888877777666
No 128
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.87 E-value=0.17 Score=55.07 Aligned_cols=222 Identities=16% Similarity=0.045 Sum_probs=127.2
Q ss_pred hHhHHhhcccCCCcEEEE-CCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 003992 409 AGDTSQFIPSKDADIAIL-EEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCD 486 (781)
Q Consensus 409 v~~L~k~I~~~kPDVIhl-~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD 486 (781)
...+.+++.+++|||.+- ++|+. .+.+..++ |.+....+.... ..++.+.. .|+
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~l-------~rvafgLg~psIi~~D~ehA~----------------~qnkl~~P-la~ 128 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPEL-------PRVAFGLGIPSIIFVDNEHAE----------------AQNKLTLP-LAD 128 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcch-------hhHHhhcCCceEEecCChhHH----------------HHhhcchh-hhh
Confidence 456899999999999986 33332 33444555 776665442211 11333433 689
Q ss_pred EEEEcChhhhh----cCC--CcEEeeCCCC----CCCCCCCcchhhHhhhCcCCCCcEEE------EEeeccCccCHHHH
Q 003992 487 KVLRLSAATQD----LPK--SVICNVHGVN----PKFLQIGEKVATDREQGQQAFSKGAY------FLGKMVWAKGYREL 550 (781)
Q Consensus 487 ~VI~vS~~~k~----l~~--kivvi~nGVD----~~~f~p~~~~~~r~~~Gi~~~~~~IL------fVGRL~~~KGid~L 550 (781)
.|++++..... .-. .-.+-+||+- ...|.|. ....+++|+..+.+.|+ -..-....++.+.+
T Consensus 129 ~ii~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~f~pd--~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~ 206 (346)
T COG1817 129 VIITPEAIDEEELLDFGADPNKISGYNGIAELANVYGFVPD--PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVL 206 (346)
T ss_pred heecccccchHHHHHhCCCccceecccceeEEeecccCCCC--HHHHHHcCCCCCCceEEEeeccccceeeccccchhhH
Confidence 88888774432 211 1244567763 2224442 34566788877545443 12223467777778
Q ss_pred HHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCc
Q 003992 551 IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKF 630 (781)
Q Consensus 551 LeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~P 630 (781)
.++++.+.+. + .+++- -..+.++..+.... +...-...|.-+++--|++++-. -|+-.-||...|+|
T Consensus 207 ~~li~~l~k~-g---iV~ip---r~~~~~eife~~~n-~i~pk~~vD~l~Llyya~lvig~-----ggTMarEaAlLGtp 273 (346)
T COG1817 207 PDLIKELKKY-G---IVLIP---REKEQAEIFEGYRN-IIIPKKAVDTLSLLYYATLVIGA-----GGTMAREAALLGTP 273 (346)
T ss_pred HHHHHHHHhC-c---EEEec---CchhHHHHHhhhcc-ccCCcccccHHHHHhhhheeecC-----CchHHHHHHHhCCc
Confidence 8888887654 2 44443 22333344443321 11111122222577788888843 37788999999999
Q ss_pred EEEeCCCCcceeec--CCccccC--CCHHHHHHHHHHHHhCCC
Q 003992 631 VICADHPSNEFFRS--FPNCLTY--KTSEDFVARVKEALANDP 669 (781)
Q Consensus 631 VVaSd~gg~g~L~~--~~ngv~~--~D~eeLa~aI~~LL~d~~ 669 (781)
.|.+.-|..+.+.. -..|+.+ .|+.+..+...+++.++.
T Consensus 274 aIs~~pGkll~vdk~lie~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 274 AISCYPGKLLAVDKYLIEKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred eEEecCCccccccHHHHhcCceeecCCHHHHHHHHHHHhhchh
Confidence 99998553322211 1333333 788888888888887764
No 129
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.12 Score=55.50 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=78.9
Q ss_pred CcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCC-CCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEE
Q 003992 532 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNG-EDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFIN 610 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~G-p~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVl 610 (781)
+.+++..|.-+ .||+ .++.++.+.+..-++++ ++|.+ |....+++.+++.. ++.++-..++...+|..||+.|.
T Consensus 159 r~ilI~lGGsD-pk~l--t~kvl~~L~~~~~nl~i-V~gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI~ 233 (318)
T COG3980 159 RDILITLGGSD-PKNL--TLKVLAELEQKNVNLHI-VVGSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAIS 233 (318)
T ss_pred heEEEEccCCC-hhhh--HHHHHHHhhccCeeEEE-EecCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchhee
Confidence 34566777544 4554 45556666554324443 45544 44577777776543 37777677777789999999986
Q ss_pred ccCCCCChHHHHHHHHhCCcEEEeCCCCc-----------ceeecCCccccCCCHHHHHHHHHHHHhCCCCCCCh
Q 003992 611 PSISDVLCTATAEALAMGKFVICADHPSN-----------EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 611 PS~~EgfGlviLEAMA~G~PVVaSd~gg~-----------g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
.. |.++.||...|+|.++--.-.| |....- ++. -........+.++.+|...+..+
T Consensus 234 Aa-----GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l--~~~-l~~~~~~~~~~~i~~d~~~rk~l 300 (318)
T COG3980 234 AA-----GSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQL--GYH-LKDLAKDYEILQIQKDYARRKNL 300 (318)
T ss_pred cc-----chHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhc--cCC-CchHHHHHHHHHhhhCHHHhhhh
Confidence 54 8999999999999444322222 222110 011 34455666677777776655443
No 130
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.59 E-value=0.015 Score=64.94 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=101.1
Q ss_pred CCCcEEEECCCchhHHHHHHHHHHhhc--C-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEEEcChhh
Q 003992 419 KDADIAILEEPEHLNWYHHGKRWTDKF--N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVLRLSAAT 495 (781)
Q Consensus 419 ~kPDVIhl~~P~~l~~~~~g~~~akk~--~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI~vS~~~ 495 (781)
.+||++++-+...+++-. .+.+++. + |++..+-...+.|- . . .+. .+.+ ++|.++++=++-
T Consensus 75 ~~pd~~i~iD~p~Fnl~l--ak~~k~~~~~i~viyyi~PqvWAWr----~-----~---R~~-~i~k-~~d~vl~ifPFE 138 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPL--AKKIKKAYPKKEIIYYILPQVWAWK----K-----G---RAK-ILEK-YCDFLASILPFE 138 (347)
T ss_pred cCCCEEEEeCCCCCCHHH--HHHHHhcCCCCCEEEEECccceeeC----c-----c---hHH-HHHH-HHhhhhccCCCC
Confidence 689999987766666644 3455555 4 66655543332221 1 0 111 1223 577777765533
Q ss_pred hhcC-CCcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEE-EEEeecc--CccCHHHHHHHHHHhhccCCCcEEEEEeC
Q 003992 496 QDLP-KSVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGA-YFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGN 571 (781)
Q Consensus 496 k~l~-~kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~I-LfVGRL~--~~KGid~LLeA~~~L~~~~p~i~LvIVG~ 571 (781)
.++. .+...+-|.+-.. +... ... +.+. +.| ++-|.-. -.+.+..+++++.++.++. ..+++.|.
T Consensus 139 ~~~yg~~~~~VGhPl~d~-~~~~-----~~~--~~~~-~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a 207 (347)
T PRK14089 139 VQFYQSKATYVGHPLLDE-IKEF-----KKD--LDKE-GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSF 207 (347)
T ss_pred HHHhCCCCEEECCcHHHh-hhhh-----hhh--cCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCC
Confidence 3222 1223333332111 1100 011 1222 444 4555332 1355667778998888753 67777775
Q ss_pred CCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeC
Q 003992 572 GEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICAD 635 (781)
Q Consensus 572 Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd 635 (781)
.. .+.+++...+.. .+.+.+ +..++|+.||+.+..| |++++|++.+|+|.|..-
T Consensus 208 ~~-~~~i~~~~~~~~-~~~~~~---~~~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 208 FK-GKDLKEIYGDIS-EFEISY---DTHKALLEAEFAFICS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred Cc-HHHHHHHHhcCC-CcEEec---cHHHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEEE
Confidence 43 355666554322 355553 4457999999999888 899999999999999853
No 131
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=96.58 E-value=0.0035 Score=66.44 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=31.2
Q ss_pred EEEEEeCccCC--CcCcccccHHHHHHHHHHcCCCEEEEEeccCC
Q 003992 311 NVAIVTTASLP--WMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLC 353 (781)
Q Consensus 311 rIaI~TtaflP--~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~ 353 (781)
||++||..+.| .+||-+......++.|++.|+ +|++++|.+.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~-~V~Vi~P~y~ 44 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGH-DVRVIMPKYG 44 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT--EEEEEEE-TH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCC-eEEEEEccch
Confidence 79999999999 445566666678899999995 9999999764
No 132
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.46 E-value=0.00011 Score=72.41 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=62.9
Q ss_pred EEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC----c---
Q 003992 567 DVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----N--- 639 (781)
Q Consensus 567 vIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg----~--- 639 (781)
+++|..... .........+.+|.++++.++..++|+.||+.|. -+.+.++.|++++|+|.|.-..+. .
T Consensus 36 v~~G~~~~~-~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~ 110 (167)
T PF04101_consen 36 VQTGKNNYE-ELKIKVENFNPNVKVFGFVDNMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPGAADNHQEE 110 (167)
T ss_dssp CCCTTCECH-HHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TTT-T-CHHH
T ss_pred EEECCCcHH-HHHHHHhccCCcEEEEechhhHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCCcchHHHHH
Confidence 445555333 3322234344459999999999999999999993 345689999999999998875554 2
Q ss_pred --ceeecCCcc--ccC--CCHHHHHHHHHHHHhCCCCCCCh
Q 003992 640 --EFFRSFPNC--LTY--KTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 640 --g~L~~~~ng--v~~--~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
..+.....+ +.. .+++.|.++|..++.++.....|
T Consensus 111 na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~ 151 (167)
T PF04101_consen 111 NAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEM 151 (167)
T ss_dssp HHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHH
T ss_pred HHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHH
Confidence 111121111 222 34677999999999887665444
No 133
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.85 E-value=0.36 Score=53.20 Aligned_cols=149 Identities=18% Similarity=0.094 Sum_probs=87.6
Q ss_pred cCCEEEEcChhhh-hcCCCcEE---eeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCH-----HHHHHHH
Q 003992 484 YCDKVLRLSAATQ-DLPKSVIC---NVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGY-----RELIDLL 554 (781)
Q Consensus 484 ~aD~VI~vS~~~k-~l~~kivv---i~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGi-----d~LLeA~ 554 (781)
..|.||++.+.-- .-+ +++. .+|.|+++.+... ......+++..+.+.+.+.||.-+..-.+ ..|++.+
T Consensus 97 ~FDlvi~p~HD~~~~~~-Nvl~t~ga~~~i~~~~l~~a-~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l 174 (311)
T PF06258_consen 97 PFDLVIVPEHDRLPRGP-NVLPTLGAPNRITPERLAEA-AAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQL 174 (311)
T ss_pred ccCEEEECcccCcCCCC-ceEecccCCCcCCHHHHHHH-HHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHH
Confidence 4799999888632 122 2211 2355554433221 11122334433445667899974433222 2566777
Q ss_pred HHhhccCCCcEEEEEeCCCCHHHHHHHHHhcC--Cc-E-EEcCCCCCHH-HHHhcccEEEEccCCCCChHHHHHHHHhCC
Q 003992 555 AKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLD--LN-L-NFQKGRDHAD-DSLHGYKVFINPSISDVLCTATAEALAMGK 629 (781)
Q Consensus 555 ~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lg--L~-V-~FlG~v~~~e-~ly~~ADVfVlPS~~EgfGlviLEAMA~G~ 629 (781)
..+.+..+ ..+.|..+-.-..++++..++.- .. + .|-+.-++.. .+|+.||.++.+..+-. -+.||++.|+
T Consensus 175 ~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvS---MvsEA~~tG~ 250 (311)
T PF06258_consen 175 AALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVS---MVSEAAATGK 250 (311)
T ss_pred HHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHH---HHHHHHHcCC
Confidence 77766654 78899887655555544444322 22 5 4433333433 89999999998865433 3899999999
Q ss_pred cEEEeCCCC
Q 003992 630 FVICADHPS 638 (781)
Q Consensus 630 PVVaSd~gg 638 (781)
||.....++
T Consensus 251 pV~v~~l~~ 259 (311)
T PF06258_consen 251 PVYVLPLPG 259 (311)
T ss_pred CEEEecCCC
Confidence 999987764
No 134
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=1.3 Score=47.37 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCEEEEcChhhhhc-C--CCcEEeeCCC----CCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCH--H---HHHH
Q 003992 485 CDKVLRLSAATQDL-P--KSVICNVHGV----NPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGY--R---ELID 552 (781)
Q Consensus 485 aD~VI~vS~~~k~l-~--~kivvi~nGV----D~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGi--d---~LLe 552 (781)
.|.||++-+.-.+. . ...+.-.||. ...+... .. +..+.++..+...+.++||.-.+.-.+ + .++.
T Consensus 110 fDlvivp~HD~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa-~~-e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~ 187 (329)
T COG3660 110 FDLVIVPYHDWREELSDQGPNILPINGSPHNVTSQRLAA-LR-EAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFAS 187 (329)
T ss_pred ceEEeccchhhhhhhhccCCceeeccCCCCcccHHHhhh-hH-HHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHH
Confidence 57777766643321 1 1223333554 3333322 11 223344433445677999977655444 2 2333
Q ss_pred HHHHhhccCCCcEEEEEeCCCCHHHHHHHHHh-cCCc--EEEcCC--CCCHH-HHHhcccEEEEccCCCCChHHHHHHHH
Q 003992 553 LLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKR-LDLN--LNFQKG--RDHAD-DSLHGYKVFINPSISDVLCTATAEALA 626 (781)
Q Consensus 553 A~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~-lgL~--V~FlG~--v~~~e-~ly~~ADVfVlPS~~EgfGlviLEAMA 626 (781)
++.+..++ ....+++--+-...+.++...+. ++-. +.+-+. -.+.. ++++.||.+|.+..+=.+ ..||.+
T Consensus 188 ~l~k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM---~sEAas 263 (329)
T COG3660 188 LLVKILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINM---CSEAAS 263 (329)
T ss_pred HHHHHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhh---hHHHhc
Confidence 33333322 35677777666666778777765 2222 444332 12333 799999999987654433 579999
Q ss_pred hCCcEEEeCCC
Q 003992 627 MGKFVICADHP 637 (781)
Q Consensus 627 ~G~PVVaSd~g 637 (781)
.|+||-+...+
T Consensus 264 TgkPv~~~~~~ 274 (329)
T COG3660 264 TGKPVFILEPP 274 (329)
T ss_pred cCCCeEEEecC
Confidence 99999886443
No 135
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=95.19 E-value=0.13 Score=58.74 Aligned_cols=131 Identities=21% Similarity=0.140 Sum_probs=81.2
Q ss_pred CCCcEEE-EEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEE
Q 003992 530 AFSKGAY-FLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVF 608 (781)
Q Consensus 530 ~~~~~IL-fVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVf 608 (781)
.++++++ ..|..... ..+++.+....... +.++++...+ .+..+ .....++...++++..+ ++..||+|
T Consensus 235 ~d~~~vyvslGt~~~~---~~l~~~~~~a~~~l-~~~vi~~~~~-~~~~~----~~~p~n~~v~~~~p~~~-~l~~ad~v 304 (406)
T COG1819 235 ADRPIVYVSLGTVGNA---VELLAIVLEALADL-DVRVIVSLGG-ARDTL----VNVPDNVIVADYVPQLE-LLPRADAV 304 (406)
T ss_pred CCCCeEEEEcCCcccH---HHHHHHHHHHHhcC-CcEEEEeccc-ccccc----ccCCCceEEecCCCHHH-HhhhcCEE
Confidence 3444443 44544433 55555544444443 5666666644 22111 12333478888888886 99999999
Q ss_pred EEccCCCCChHHHHHHHHhCCcEEEeCCCCcce-----eecCCcc--cc--CCCHHHHHHHHHHHHhCCCCCCCh
Q 003992 609 INPSISDVLCTATAEALAMGKFVICADHPSNEF-----FRSFPNC--LT--YKTSEDFVARVKEALANDPQPLTP 674 (781)
Q Consensus 609 VlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~-----L~~~~ng--v~--~~D~eeLa~aI~~LL~d~~~r~~m 674 (781)
|.. |--.++.||+.+|+|+|.-..+...+ +..-..| +. .-+++.++++|.++|+|+..++..
T Consensus 305 I~h----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~ 375 (406)
T COG1819 305 IHH----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAA 375 (406)
T ss_pred Eec----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 955 34578999999999999986653211 0001111 33 378999999999999988665543
No 136
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.049 Score=61.32 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred HHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeec----CC--cc--c-------cCCCHHHHHHHHH
Q 003992 598 ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRS----FP--NC--L-------TYKTSEDFVARVK 662 (781)
Q Consensus 598 ~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~----~~--ng--v-------~~~D~eeLa~aI~ 662 (781)
-+++.+.|.+-|+||.+|.||.+..|.--||+|-|+|+..|.|-+.. .+ -| + +.++.+++++-+.
T Consensus 494 YeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~ 573 (692)
T KOG3742|consen 494 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMY 573 (692)
T ss_pred HHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHH
Confidence 34789999999999999999999999999999999999987643221 11 11 1 1144455555555
Q ss_pred HHHhCCCCCCCh-------HHHHcCCHHHHHHHHHHH
Q 003992 663 EALANDPQPLTP-------EQRYNLSWEAATQRFIEY 692 (781)
Q Consensus 663 ~LL~d~~~r~~m-------~~~~~fSWe~iaerll~~ 692 (781)
...... .|++. ....-.+|..+..-|.++
T Consensus 574 ~F~~qs-RRQRIiqRNrtErLSdLLDWk~lG~~Y~~a 609 (692)
T KOG3742|consen 574 EFCKQS-RRQRIIQRNRTERLSDLLDWKYLGRYYRKA 609 (692)
T ss_pred HHHHHH-HHHHHHHhcchhhHHHHHhHHHHhHHHHHH
Confidence 544322 22222 223457888776665544
No 137
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=93.56 E-value=5.8 Score=44.38 Aligned_cols=234 Identities=16% Similarity=0.114 Sum_probs=118.0
Q ss_pred HHhhcccCCCcEEEECC-CchhHH-HHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEE
Q 003992 412 TSQFIPSKDADIAILEE-PEHLNW-YHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKV 488 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~-P~~l~~-~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~V 488 (781)
|...+..++|||+++.. |+.+-. +.+.+.+.+... +.+.... +..+..... .+.|-..-....+.+ |.|.|
T Consensus 98 il~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr-~i~D~p~~~----~~~w~~~~~~~~I~r-~yD~V 171 (400)
T COG4671 98 ILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLR-SIRDIPQEL----EADWRRAETVRLINR-FYDLV 171 (400)
T ss_pred HHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehH-hhhhchhhh----ccchhhhHHHHHHHH-hheEE
Confidence 66777889999999874 332211 112233344333 3322222 221111110 112222333444555 67888
Q ss_pred EEcCh-hhhhcCC------Cc--EEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhc
Q 003992 489 LRLSA-ATQDLPK------SV--ICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN 559 (781)
Q Consensus 489 I~vS~-~~k~l~~------ki--vvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~ 559 (781)
++..+ ...+... .+ .+.+.|.=..-....+... ... ++...+++.+|. ..-|.+++..+++.. .
T Consensus 172 ~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~---~~~-pE~~~Ilvs~GG--G~dG~eLi~~~l~A~-~ 244 (400)
T COG4671 172 LVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPP---HEA-PEGFDILVSVGG--GADGAELIETALAAA-Q 244 (400)
T ss_pred EEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCC---cCC-CccceEEEecCC--ChhhHHHHHHHHHHh-h
Confidence 88776 4444221 11 2233333100000000000 000 223456667774 345555544444322 2
Q ss_pred cCCCcE---EEEEeCCCCH--HHHHHHHHhcC--CcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEE
Q 003992 560 DLDGFK---LDVFGNGEDA--YEVQSAAKRLD--LNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI 632 (781)
Q Consensus 560 ~~p~i~---LvIVG~Gp~~--~~L~~~a~~lg--L~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVV 632 (781)
..+++. ++|.| |.. ...+++..... -+|....+.++...+++.|+..|.-+ -=+++.|-+.+|||.+
T Consensus 245 ~l~~l~~~~~ivtG--P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~----GYNTvCeILs~~k~aL 318 (400)
T COG4671 245 LLAGLNHKWLIVTG--PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMG----GYNTVCEILSFGKPAL 318 (400)
T ss_pred hCCCCCcceEEEeC--CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeecc----cchhhhHHHhCCCceE
Confidence 223333 44555 543 33333333322 23888888889889999999999444 2378899999999998
Q ss_pred EeCCC--Cc------------ceeecCCccccC--CCHHHHHHHHHHHHhCC
Q 003992 633 CADHP--SN------------EFFRSFPNCLTY--KTSEDFVARVKEALAND 668 (781)
Q Consensus 633 aSd~g--g~------------g~L~~~~ngv~~--~D~eeLa~aI~~LL~d~ 668 (781)
.-... +. |.+ ..+.+ -+++.|+++|..+++.|
T Consensus 319 ivPr~~p~eEQliRA~Rl~~LGL~----dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 319 IVPRAAPREEQLIRAQRLEELGLV----DVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred EeccCCCcHHHHHHHHHHHhcCcc----eeeCcccCChHHHHHHHHhcccCC
Confidence 86443 21 221 11222 34788899988888754
No 138
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.07 E-value=1 Score=48.07 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=61.2
Q ss_pred CcEEEEEeeccCc-------cCHHHHHHHHHHhhccCCCcEEEEEeCC-----CCHHHHHHHHHhcCCcEEEcCCCCCHH
Q 003992 532 SKGAYFLGKMVWA-------KGYRELIDLLAKHKNDLDGFKLDVFGNG-----EDAYEVQSAAKRLDLNLNFQKGRDHAD 599 (781)
Q Consensus 532 ~~~ILfVGRL~~~-------KGid~LLeA~~~L~~~~p~i~LvIVG~G-----p~~~~L~~~a~~lgL~V~FlG~v~~~e 599 (781)
++.+++....... .+...+++.+..+.+..|+.+++|-=.- .....+.+... ...+.+....-+..
T Consensus 117 ~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 194 (269)
T PF05159_consen 117 KKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN--LPNVVIIDDDVNLY 194 (269)
T ss_pred CCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc--CCCeEEECCCCCHH
Confidence 4455555555433 2556677777777777788888765431 11122222211 12255555445666
Q ss_pred HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCC
Q 003992 600 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~ 636 (781)
+++..||.++.-+ +.+-+|||.+|+|||+.-.
T Consensus 195 ~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 195 ELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred HHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecC
Confidence 7999999777655 5789999999999999643
No 139
>PLN03004 UDP-glycosyltransferase
Probab=92.73 E-value=0.41 Score=55.42 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=73.9
Q ss_pred EEEEEeecc--CccCHHHHHHHHHHhhccCCCcEEEEEeCCC--------CH-----HHHHHHHHhcCCcEEEcCCCCCH
Q 003992 534 GAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGE--------DA-----YEVQSAAKRLDLNLNFQKGRDHA 598 (781)
Q Consensus 534 ~ILfVGRL~--~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp--------~~-----~~L~~~a~~lgL~V~FlG~v~~~ 598 (781)
+.+..|.+. ..+.+.+|..++.... . .++.+=..+ .. +.+++..+. -.+...++.+..
T Consensus 273 vyvsfGS~~~~~~~q~~ela~gL~~s~----~-~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~--~g~~v~~W~PQ~ 345 (451)
T PLN03004 273 VFLCFGSLGLFSKEQVIEIAVGLEKSG----Q-RFLWVVRNPPELEKTELDLKSLLPEGFLSRTED--KGMVVKSWAPQV 345 (451)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHCC----C-CEEEEEcCCccccccccchhhhCChHHHHhccC--CcEEEEeeCCHH
Confidence 335667663 4556667777776542 2 233332221 00 122233322 237888888888
Q ss_pred HHHHhcccE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCC----cc-eeec-CCcc--cc-----CCCHHHHHHHHHH
Q 003992 599 DDSLHGYKV--FINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNC--LT-----YKTSEDFVARVKE 663 (781)
Q Consensus 599 e~ly~~ADV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg----~g-~L~~-~~ng--v~-----~~D~eeLa~aI~~ 663 (781)
+ +++.+++ || +-+--++++||+++|+|+|+....+ |. .++. .+.| +. .-+.++++++|++
T Consensus 346 ~-iL~H~~v~~Fv----TH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 346 P-VLNHKAVGGFV----THCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred H-HhCCCccceEe----ccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHH
Confidence 6 9999998 66 3445579999999999999986542 21 1111 1112 11 2378999999999
Q ss_pred HHhCC
Q 003992 664 ALAND 668 (781)
Q Consensus 664 LL~d~ 668 (781)
+++++
T Consensus 421 vm~~~ 425 (451)
T PLN03004 421 IIGEC 425 (451)
T ss_pred HhcCH
Confidence 99764
No 140
>PLN02448 UDP-glycosyltransferase family protein
Probab=92.09 E-value=1.3 Score=51.37 Aligned_cols=121 Identities=16% Similarity=0.045 Sum_probs=73.2
Q ss_pred EEEEEeeccC--ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccE--EE
Q 003992 534 GAYFLGKMVW--AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKV--FI 609 (781)
Q Consensus 534 ~ILfVGRL~~--~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADV--fV 609 (781)
+.+..|.+.. .+-+..++++++.. +..++++..++ ...+.+... -++.+.++.+..+ ++...++ ||
T Consensus 277 vyvsfGs~~~~~~~~~~~~~~~l~~~-----~~~~lw~~~~~-~~~~~~~~~---~~~~v~~w~pQ~~-iL~h~~v~~fv 346 (459)
T PLN02448 277 LYVSLGSFLSVSSAQMDEIAAGLRDS-----GVRFLWVARGE-ASRLKEICG---DMGLVVPWCDQLK-VLCHSSVGGFW 346 (459)
T ss_pred EEEeecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCc-hhhHhHhcc---CCEEEeccCCHHH-HhccCccceEE
Confidence 4456676532 23355666666653 45666665443 222333222 1356678887775 8888776 66
Q ss_pred EccCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eeecC-Ccc--cc-------CCCHHHHHHHHHHHHhCC
Q 003992 610 NPSISDVLCTATAEALAMGKFVICADHPSN----E-FFRSF-PNC--LT-------YKTSEDFVARVKEALAND 668 (781)
Q Consensus 610 lPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~~-~ng--v~-------~~D~eeLa~aI~~LL~d~ 668 (781)
+-+--.+++||+++|+|+|+-...+. . .+... +.| +. .-+.+++.++++++|.++
T Consensus 347 ----tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 347 ----THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred ----ecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 34556799999999999999866532 1 11110 111 11 247899999999999875
No 141
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=91.75 E-value=25 Score=38.99 Aligned_cols=259 Identities=13% Similarity=0.046 Sum_probs=134.5
Q ss_pred HHhhcccCCCcEEEECCCchhHHHHHHHHHHhhcC--CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEE
Q 003992 412 TSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVL 489 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~~--pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI 489 (781)
+....+..+.+=+++|.-+....+. ..+..+.. .+.+++..-- -| +....++..++..+.+.+.+ ....|+
T Consensus 31 vi~~a~~~r~~rff~HGqFn~~lwl--all~g~~~~~q~yWhiWGaD-LY---e~~~~lk~rlfy~lRR~aq~-rvg~v~ 103 (322)
T PRK02797 31 VIAKAKANRAQRFFLHGQFNPTLWL--ALLSGKIKPKQFYWHIWGAD-LY---EESKGLKFRLFYPLRRLAQK-RVGHVF 103 (322)
T ss_pred HHHHHhhCccceEEEecCCCHHHHH--HHHhCCcCccceEEEEEChh-hh---hcccchhHHHHHHHHHHHHh-hcCeEE
Confidence 3344444667777777654332222 22333333 4444444311 12 12234555566677777666 566777
Q ss_pred EcChhh----hhcCC---CcEEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeec-cCccCHHHHHHHHHHhhccC
Q 003992 490 RLSAAT----QDLPK---SVICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKM-VWAKGYRELIDLLAKHKNDL 561 (781)
Q Consensus 490 ~vS~~~----k~l~~---kivvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL-~~~KGid~LLeA~~~L~~~~ 561 (781)
++-... ++.++ +....|.-.++......+ . ..+..+..+.+|+= ++..++.++++++.+...
T Consensus 104 atrGD~~~~a~~~~~v~~~llyfpt~m~~~l~~~~~-~-------~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~-- 173 (322)
T PRK02797 104 ATRGDLSYFAQRHPKVPGSLLYFPTRMDPSLNTMAN-D-------RQRAGKMTILVGNSGDRSNRHIEALRALHQQFG-- 173 (322)
T ss_pred EecchHHHHHHhcCCCCccEEecCCcchhhhccccc-c-------ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhC--
Confidence 743322 22222 221112222222111100 0 01123566778874 577888888888877644
Q ss_pred CCcEEEEE-eC--CCC--HHHHHHHHHhcCC-c-E-EEcCCCCCHH--HHHhcccEEEEcc-CCCCChHHHHHHHHhCCc
Q 003992 562 DGFKLDVF-GN--GED--AYEVQSAAKRLDL-N-L-NFQKGRDHAD--DSLHGYKVFINPS-ISDVLCTATAEALAMGKF 630 (781)
Q Consensus 562 p~i~LvIV-G~--Gp~--~~~L~~~a~~lgL-~-V-~FlG~v~~~e--~ly~~ADVfVlPS-~~EgfGlviLEAMA~G~P 630 (781)
.++++++. |- |.. .+++++.++++-- + + ......+-.+ ++++.||+.++.- +.+|+|+.+ =.+.+|+|
T Consensus 174 ~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~-lLi~~G~~ 252 (322)
T PRK02797 174 DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLC-LLIQLGKP 252 (322)
T ss_pred CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHH-HHHHCCCc
Confidence 46777664 33 332 2566666666533 2 3 3345566555 8999999888775 678888654 47899999
Q ss_pred EEEeCC-CCcceeecCCccc-cC---CCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHhh
Q 003992 631 VICADH-PSNEFFRSFPNCL-TY---KTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 631 VVaSd~-gg~g~L~~~~ngv-~~---~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Ye 694 (781)
|+.+.. +....+....--+ .. -|...+.++=+++........ .|+-+..++.+.++++
T Consensus 253 v~l~r~n~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk~~I------~Ff~pn~~~~W~~~l~ 315 (322)
T PRK02797 253 VVLSRDNPFWQDLTEQGLPVLFTGDDLDEDIVREAQRQLASVDKNII------AFFSPNYLQGWRNALA 315 (322)
T ss_pred EEEecCCchHHHHHhCCCeEEecCCcccHHHHHHHHHHHHhhCccee------eecCHhHHHHHHHHHH
Confidence 999844 4222221110001 11 233444444333333221111 1888888888888876
No 142
>PLN02670 transferase, transferring glycosyl groups
Probab=91.59 E-value=2.3 Score=49.62 Aligned_cols=148 Identities=14% Similarity=0.006 Sum_probs=84.1
Q ss_pred EEEEeecc--CccCHHHHHHHHHHhhccCCCcEEEEEeCCC----------CHHHHHHHHHhcCCcEEEcCCCCCHHHHH
Q 003992 535 AYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGE----------DAYEVQSAAKRLDLNLNFQKGRDHADDSL 602 (781)
Q Consensus 535 ILfVGRL~--~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp----------~~~~L~~~a~~lgL~V~FlG~v~~~e~ly 602 (781)
.+..|.+. ....+.+|..++..... .++++=..+ ..+.+.+..+..| +.+.++.+..+ ++
T Consensus 282 yvsfGS~~~l~~~q~~ela~gl~~s~~-----~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG--~vv~~W~PQ~~-IL 353 (472)
T PLN02670 282 YVALGTEASLRREEVTELALGLEKSET-----PFFWVLRNEPGTTQNALEMLPDGFEERVKGRG--MIHVGWVPQVK-IL 353 (472)
T ss_pred EEEecccccCCHHHHHHHHHHHHHCCC-----CEEEEEcCCcccccchhhcCChHHHHhccCCC--eEEeCcCCHHH-Hh
Confidence 34667653 34556667777665522 233332211 0122333333333 77789988776 88
Q ss_pred hcccE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCC-------------cceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 603 HGYKV--FINPSISDVLCTATAEALAMGKFVICADHPS-------------NEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 603 ~~ADV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg-------------~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
+...+ || +-+.-++++||+++|+|+|+-...+ .|..+...+.-..-+.+++.++|++++.+
T Consensus 354 ~H~~v~~Fv----tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~ 429 (472)
T PLN02670 354 SHESVGGFL----THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVD 429 (472)
T ss_pred cCcccceee----ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcC
Confidence 77776 66 3355589999999999999986642 23221110000013689999999999987
Q ss_pred CC---CCCCh-----HHHHcCCHHHHHHHHHHHhh
Q 003992 668 DP---QPLTP-----EQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 668 ~~---~r~~m-----~~~~~fSWe~iaerll~~Ye 694 (781)
++ .+.+. ..+.+=+-+.+++.+++...
T Consensus 430 ~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 430 DAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLR 464 (472)
T ss_pred cchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 52 22222 12233455566666665554
No 143
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=90.90 E-value=16 Score=40.93 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=69.8
Q ss_pred CcEEEEEeec-cCccCHHHHHHHHHHhhccCCCcEEEE-EeCCC----CHHHHHHHHHhc-CCc-EEE-cCCCCCHH--H
Q 003992 532 SKGAYFLGKM-VWAKGYRELIDLLAKHKNDLDGFKLDV-FGNGE----DAYEVQSAAKRL-DLN-LNF-QKGRDHAD--D 600 (781)
Q Consensus 532 ~~~ILfVGRL-~~~KGid~LLeA~~~L~~~~p~i~LvI-VG~Gp----~~~~L~~~a~~l-gL~-V~F-lG~v~~~e--~ 600 (781)
.+.-+.||+= ++..++.++++++.+... .++++++ .|.|. +.+++++.++++ +-+ +.. ..+.+-.+ +
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~~--~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQFG--DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhcC--CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 3556677864 567888888887776432 4677766 34443 235566666654 322 544 45666666 8
Q ss_pred HHhcccEEEEcc-CCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 601 SLHGYKVFINPS-ISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 601 ly~~ADVfVlPS-~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+++.||+.++.. +..|+|+. +=.+.+|+||+.+...
T Consensus 262 lL~~cDl~if~~~RQQgiGnI-~lLl~~G~~v~L~~~n 298 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNI-CLLLQLGKKVFLSRDN 298 (360)
T ss_pred HHHhCCEEEEeechhhhHhHH-HHHHHcCCeEEEecCC
Confidence 999999999997 56788764 4579999999998654
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.80 E-value=1.2 Score=47.70 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhc-CCc-EEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHH
Q 003992 547 YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRL-DLN-LNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATA 622 (781)
Q Consensus 547 id~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~l-gL~-V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviL 622 (781)
.+...+++..+.++ +++++++|+.++.+..++..+.. +.. +.+.|..+-.+ .+++.||++|-+.. |..-+
T Consensus 139 ~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds----g~~Hl 212 (279)
T cd03789 139 AERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS----GPMHL 212 (279)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC----HHHHH
Confidence 34566666666554 78899999776666666665544 223 55667654444 89999999997742 44444
Q ss_pred HHHHhCCcEEEeCCCC
Q 003992 623 EALAMGKFVICADHPS 638 (781)
Q Consensus 623 EAMA~G~PVVaSd~gg 638 (781)
. .|+|+|+|+--.+.
T Consensus 213 A-~a~~~p~i~l~g~~ 227 (279)
T cd03789 213 A-AALGTPTVALFGPT 227 (279)
T ss_pred H-HHcCCCEEEEECCC
Confidence 3 69999999875443
No 145
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=90.51 E-value=1.2 Score=51.57 Aligned_cols=122 Identities=21% Similarity=0.117 Sum_probs=65.7
Q ss_pred EEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcc--cEEEEccC
Q 003992 536 YFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSI 613 (781)
Q Consensus 536 LfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~A--DVfVlPS~ 613 (781)
+..|.+.. .-.+..++++.+..++.|. ++++.-++.....+ .-++....+.+..+ +++.. ++||
T Consensus 281 vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-------~~n~~~~~W~PQ~~-lL~hp~v~~fi---- 346 (500)
T PF00201_consen 281 VSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-------PKNVLIVKWLPQND-LLAHPRVKLFI---- 346 (500)
T ss_dssp EE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-------HTTEEEESS--HHH-HHTSTTEEEEE----
T ss_pred EecCcccc-hhHHHHHHHHHHHHhhCCC-cccccccccccccc-------cceEEEeccccchh-hhhcccceeee----
Confidence 45566642 2333434444444444455 67776655322222 12378888888665 88755 4566
Q ss_pred CCCChHHHHHHHHhCCcEEEeCCCCc----c-eeecCCcc--ccC--CCHHHHHHHHHHHHhCCCCC
Q 003992 614 SDVLCTATAEALAMGKFVICADHPSN----E-FFRSFPNC--LTY--KTSEDFVARVKEALANDPQP 671 (781)
Q Consensus 614 ~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~~~ng--v~~--~D~eeLa~aI~~LL~d~~~r 671 (781)
+-|.-.++.||+.+|+|+|+-..-+. . .+...+.| +.. -+.+++.++|.++++|+..+
T Consensus 347 tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~ 413 (500)
T PF00201_consen 347 THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYK 413 (500)
T ss_dssp ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHH
T ss_pred eccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHH
Confidence 44667899999999999999866432 0 00111111 221 36789999999999987433
No 146
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.15 E-value=6 Score=43.03 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=74.3
Q ss_pred CcEEEEEeeccCccCH--HHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCcEEEcCCCCCHH--HHHhccc
Q 003992 532 SKGAYFLGKMVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYK 606 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGi--d~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~AD 606 (781)
+.++++.|.-.+.|.+ +...+.+..+.++ +.+++++|+|+.+ +..++..+..+ +..+.|..+-.+ ++++.||
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCC
Confidence 4455677754566665 4566666666543 5788888666654 34444444322 245667666555 8999999
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcce---------eecCCccccCCCHHHHHHHHHHHH
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICADHPSNEF---------FRSFPNCLTYKTSEDFVARVKEAL 665 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~---------L~~~~ngv~~~D~eeLa~aI~~LL 665 (781)
+||-+- +.++=+ |-|+|+|+|+--.+.... ..-...|+..=++++..+++.++|
T Consensus 257 l~I~~D---Sgp~Hl--Aaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 AVVGVD---TGLTHL--AAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EEEeCC---ChHHHH--HHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 999654 334333 568899999874433211 000122344456777777776653
No 147
>PLN02562 UDP-glycosyltransferase
Probab=88.32 E-value=2.1 Score=49.51 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=73.3
Q ss_pred cEEEEEeecc---CccCHHHHHHHHHHhhccCCCcEEEE-EeCC---CCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcc
Q 003992 533 KGAYFLGKMV---WAKGYRELIDLLAKHKNDLDGFKLDV-FGNG---EDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGY 605 (781)
Q Consensus 533 ~~ILfVGRL~---~~KGid~LLeA~~~L~~~~p~i~LvI-VG~G---p~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~A 605 (781)
.+.+..|.+. ..+-+..++.++..... .+++ +..+ ...+.+.+.... ++.+.++.+..+ ++...
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~g~-----~fiW~~~~~~~~~l~~~~~~~~~~---~~~v~~w~PQ~~-iL~h~ 345 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEASGR-----PFIWVLNPVWREGLPPGYVERVSK---QGKVVSWAPQLE-VLKHQ 345 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHCCC-----CEEEEEcCCchhhCCHHHHHHhcc---CEEEEecCCHHH-HhCCC
Confidence 3445777753 44556667777766522 3333 3321 111222222221 256678887776 88886
Q ss_pred cE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----cee-ec-CCccccC--CCHHHHHHHHHHHHhCCC
Q 003992 606 KV--FINPSISDVLCTATAEALAMGKFVICADHPSN----EFF-RS-FPNCLTY--KTSEDFVARVKEALANDP 669 (781)
Q Consensus 606 DV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g~L-~~-~~ngv~~--~D~eeLa~aI~~LL~d~~ 669 (781)
++ || +-+.-.+++||+++|+|+|+...-+. ... .. ...++.. -+.++++++|++++.++.
T Consensus 346 ~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~ 415 (448)
T PLN02562 346 AVGCYL----THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSG 415 (448)
T ss_pred ccceEE----ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHH
Confidence 64 55 33445789999999999999865432 211 11 1222222 478899999999998753
No 148
>PLN03007 UDP-glucosyltransferase family protein
Probab=87.58 E-value=5.6 Score=46.50 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=52.0
Q ss_pred EEEcCCCCCHHHHHhcccE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----ce-ee---cCCccc---------
Q 003992 589 LNFQKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVICADHPSN----EF-FR---SFPNCL--------- 649 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g~-L~---~~~ngv--------- 649 (781)
+...++.+..+ ++..+++ || +-+--++++||+++|+|+|+-...+. .. +. ..+-++
T Consensus 347 ~~v~~w~PQ~~-iL~h~~v~~fv----tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~ 421 (482)
T PLN03007 347 LIIRGWAPQVL-ILDHQATGGFV----THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVK 421 (482)
T ss_pred EEEecCCCHHH-HhccCccceee----ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccc
Confidence 88889988876 8888876 66 33445799999999999999865422 11 10 000001
Q ss_pred -cCCCHHHHHHHHHHHHhCC
Q 003992 650 -TYKTSEDFVARVKEALAND 668 (781)
Q Consensus 650 -~~~D~eeLa~aI~~LL~d~ 668 (781)
..-+.+++.++|++++.++
T Consensus 422 ~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 422 GDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cCcccHHHHHHHHHHHhcCc
Confidence 1247889999999999875
No 149
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=87.27 E-value=3.4 Score=43.05 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=57.8
Q ss_pred CCcEEEEEeeccCccCHHH--HHHHHHHhhccCCCcEEEEEeCCCC-HHH-HHHHHHhcCC-cEEEcCCCCCHH--HHHh
Q 003992 531 FSKGAYFLGKMVWAKGYRE--LIDLLAKHKNDLDGFKLDVFGNGED-AYE-VQSAAKRLDL-NLNFQKGRDHAD--DSLH 603 (781)
Q Consensus 531 ~~~~ILfVGRL~~~KGid~--LLeA~~~L~~~~p~i~LvIVG~Gp~-~~~-L~~~a~~lgL-~V~FlG~v~~~e--~ly~ 603 (781)
...++++.|.-.+.|.+.. ..+.+..+.+.+ ..++++|+..+ ..+ .+...+...- .+.+.|..+-.+ .+++
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 3456677777777777654 777777776653 78888887766 233 3333333222 278888776555 8999
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEeCC
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~ 636 (781)
.||++|-+-. -.+==|.|+|+|+|+-=.
T Consensus 183 ~a~~~I~~Dt-----g~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 183 RADLVIGNDT-----GPMHLAAALGTPTVALFG 210 (247)
T ss_dssp TSSEEEEESS-----HHHHHHHHTT--EEEEES
T ss_pred cCCEEEecCC-----hHHHHHHHHhCCEEEEec
Confidence 9999997642 234447889999999743
No 150
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=87.20 E-value=1.1 Score=49.94 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred cCCEEEEcChhhhhcCC------CcEEeeCCCC-CCC-CCCC--cchhhHhhhCcCCCCcEEEEEeeccCccC------H
Q 003992 484 YCDKVLRLSAATQDLPK------SVICNVHGVN-PKF-LQIG--EKVATDREQGQQAFSKGAYFLGKMVWAKG------Y 547 (781)
Q Consensus 484 ~aD~VI~vS~~~k~l~~------kivvi~nGVD-~~~-f~p~--~~~~~r~~~Gi~~~~~~ILfVGRL~~~KG------i 547 (781)
.+|.+++.|+..++... ...++..|.. .+. +... ......+.+++..++++|+|+=....... .
T Consensus 134 ~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~ 213 (369)
T PF04464_consen 134 NYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFF 213 (369)
T ss_dssp T-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS--
T ss_pred CCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeecccccccccccccc
Confidence 58999999997766221 2234556763 111 1111 12344566788788889998854322211 1
Q ss_pred HHHH--HHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHH
Q 003992 548 RELI--DLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEAL 625 (781)
Q Consensus 548 d~LL--eA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAM 625 (781)
...+ +.+..+ ..+++.+++-..--........ ....-.|.+.....+..+++..||++|. + ++-++.|++
T Consensus 214 ~~~~~~~~l~~~--~~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLIT----D-ySSi~fD~~ 285 (369)
T PF04464_consen 214 FSDLDFEKLNFL--LKNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILIT----D-YSSIIFDFL 285 (369)
T ss_dssp --TT-HHHHHHH--HTTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEE----S-S-THHHHHG
T ss_pred ccccCHHHHHHH--hCCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEE----e-chhHHHHHH
Confidence 2222 222212 2357777776531111111111 1122238887776677789999999993 2 355899999
Q ss_pred HhCCcEEEe--CCC----CcceeecC---CccccCCCHHHHHHHHHHHHhCCCC
Q 003992 626 AMGKFVICA--DHP----SNEFFRSF---PNCLTYKTSEDFVARVKEALANDPQ 670 (781)
Q Consensus 626 A~G~PVVaS--d~g----g~g~L~~~---~ngv~~~D~eeLa~aI~~LL~d~~~ 670 (781)
.+++|||.. |.. .-|+.... .-|....+.++|.++|..+++++..
T Consensus 286 ~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~~~ 339 (369)
T PF04464_consen 286 LLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIENPDE 339 (369)
T ss_dssp GGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHHHHH
T ss_pred HhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhhCCHH
Confidence 999999965 332 12333221 1223348999999999998876543
No 151
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=87.17 E-value=4 Score=44.82 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=65.8
Q ss_pred hhhCcCCCCc-EEEEEee-ccCccCHH--HHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc-EEEcCCCCCH
Q 003992 524 REQGQQAFSK-GAYFLGK-MVWAKGYR--ELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRDHA 598 (781)
Q Consensus 524 ~~~Gi~~~~~-~ILfVGR-L~~~KGid--~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~-V~FlG~v~~~ 598 (781)
..+++...++ +++..|. ..+.|.+. ...+.+..+.+. +.++++.|+..+.+..++.....+-. +.+.|..+-.
T Consensus 166 ~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~ 243 (334)
T TIGR02195 166 AKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLD 243 (334)
T ss_pred HHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHH
Confidence 3445443334 4456655 23555544 555555555443 57889999776666555555444333 4467766655
Q ss_pred H--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 599 D--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 599 e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+ .+++.||+||-.- +.+ +==|.|+|+|+|+--.+
T Consensus 244 el~ali~~a~l~I~~D---SGp--~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 244 EAVDLIALAKAVVTND---SGL--MHVAAALNRPLVALYGS 279 (334)
T ss_pred HHHHHHHhCCEEEeeC---CHH--HHHHHHcCCCEEEEECC
Confidence 5 8999999999654 333 33467999999987444
No 152
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=85.17 E-value=39 Score=36.47 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEeC--CCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHH
Q 003992 546 GYRELIDLLAKHKNDLDGFKLDVFGN--GEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTAT 621 (781)
Q Consensus 546 Gid~LLeA~~~L~~~~p~i~LvIVG~--Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlvi 621 (781)
.++.+.+++..+.++. +.+++++.. ..+....+.......-....+...+..+ .+++.||++|-... -.+
T Consensus 189 ~~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-----H~~ 262 (298)
T TIGR03609 189 RLLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-----HAL 262 (298)
T ss_pred HHHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-----HHH
Confidence 3556777777776552 455555543 2344444444444332211222222223 78999998886654 467
Q ss_pred HHHHHhCCcEEEeC
Q 003992 622 AEALAMGKFVICAD 635 (781)
Q Consensus 622 LEAMA~G~PVVaSd 635 (781)
+=|+.+|+|+|+-.
T Consensus 263 I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 263 ILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHcCCCEEEee
Confidence 88999999999863
No 153
>PLN02764 glycosyltransferase family protein
Probab=84.91 E-value=9.4 Score=44.40 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=52.0
Q ss_pred EEEcCCCCCHHHHHhccc--EEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc-----ceeec-CCcccc-------CCC
Q 003992 589 LNFQKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRS-FPNCLT-------YKT 653 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~AD--VfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~-----g~L~~-~~ngv~-------~~D 653 (781)
+...++.+..+ +++... +|| +-+--++++||+++|+|+|+-...+. ..+.. -+.++. .-+
T Consensus 319 ~v~~~W~PQ~~-vL~h~~v~~Fv----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQPL-ILSHPSVGCFV----SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCHHH-HhcCcccCeEE----ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 67778888887 887754 477 34556899999999999999866532 11111 111111 137
Q ss_pred HHHHHHHHHHHHhCC
Q 003992 654 SEDFVARVKEALAND 668 (781)
Q Consensus 654 ~eeLa~aI~~LL~d~ 668 (781)
.+++.++++++++++
T Consensus 394 ~e~i~~av~~vm~~~ 408 (453)
T PLN02764 394 KESLRDAINSVMKRD 408 (453)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999875
No 154
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=84.03 E-value=10 Score=44.54 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=52.4
Q ss_pred EEEcCCCCCHHHHHhcccE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eee-cCCcccc------CCCH
Q 003992 589 LNFQKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVICADHPSN----E-FFR-SFPNCLT------YKTS 654 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~-~~~ngv~------~~D~ 654 (781)
+.+.++.+..+ ++....+ || +-+--++++||+.+|+|+|+-...+. . .+. ..+.|+. .-+.
T Consensus 340 ~vv~~W~PQ~~-iL~h~~vg~Fi----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~ 414 (481)
T PLN02992 340 FVVPSWAPQAE-ILAHQAVGGFL----THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISR 414 (481)
T ss_pred EEEeecCCHHH-HhCCcccCeeE----ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccH
Confidence 78889988776 8888776 65 34556799999999999999866432 1 111 1111111 1378
Q ss_pred HHHHHHHHHHHhCC
Q 003992 655 EDFVARVKEALAND 668 (781)
Q Consensus 655 eeLa~aI~~LL~d~ 668 (781)
+++.++|.+++.++
T Consensus 415 ~~l~~av~~vm~~~ 428 (481)
T PLN02992 415 SKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHhcCC
Confidence 89999999999875
No 155
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.74 E-value=4.9 Score=44.55 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=67.3
Q ss_pred CcEEEEEe-eccCccCHH--HHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhccc
Q 003992 532 SKGAYFLG-KMVWAKGYR--ELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYK 606 (781)
Q Consensus 532 ~~~ILfVG-RL~~~KGid--~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~AD 606 (781)
+.+++..| .-...|++. ...+.+..+.++. .+++++|+..+.+..++..+..+..+.+.|..+-.+ .+++.||
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~ 253 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGAD 253 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCC
Confidence 34556667 444566554 5666666666654 889999988666666666665553344788877766 8889999
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeCC
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd~ 636 (781)
++|-+.. -.+==|.|.|+|+|+--.
T Consensus 254 l~I~~DS-----g~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 254 LVIGNDS-----GPMHLAAALGTPTIALYG 278 (334)
T ss_pred EEEccCC-----hHHHHHHHcCCCEEEEEC
Confidence 9997653 233447899999998743
No 156
>PLN02208 glycosyltransferase family protein
Probab=83.06 E-value=15 Score=42.54 Aligned_cols=78 Identities=10% Similarity=-0.000 Sum_probs=52.2
Q ss_pred EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----ce-eec-CCccccC-------CCHH
Q 003992 589 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----EF-FRS-FPNCLTY-------KTSE 655 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g~-L~~-~~ngv~~-------~D~e 655 (781)
+...++.+..+ +++...+-+|-+ -+--++++||+++|+|+|+-..-+. .. ++. .+-|+.. -+.+
T Consensus 313 ~~v~~W~PQ~~-iL~H~~v~~Fvt--HcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~ 389 (442)
T PLN02208 313 VVWGGWVQQPL-ILDHPSIGCFVN--HCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKE 389 (442)
T ss_pred cEeeccCCHHH-HhcCCccCeEEc--cCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHH
Confidence 67778888876 888877533333 3445899999999999999866422 11 111 1111111 3778
Q ss_pred HHHHHHHHHHhCCC
Q 003992 656 DFVARVKEALANDP 669 (781)
Q Consensus 656 eLa~aI~~LL~d~~ 669 (781)
++.++|+++++++.
T Consensus 390 ~l~~ai~~~m~~~~ 403 (442)
T PLN02208 390 SLSNAIKSVMDKDS 403 (442)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999998763
No 157
>PLN00414 glycosyltransferase family protein
Probab=83.04 E-value=11 Score=43.83 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCcEEEcCCCCCHHHHHhcc--cEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc-----ceeec-CCc
Q 003992 576 YEVQSAAKRLDLNLNFQKGRDHADDSLHGY--KVFINPSISDVLCTATAEALAMGKFVICADHPSN-----EFFRS-FPN 647 (781)
Q Consensus 576 ~~L~~~a~~lgL~V~FlG~v~~~e~ly~~A--DVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~-----g~L~~-~~n 647 (781)
+.+++..+..| +.+.|+++..+ ++... ++|| +-+--++++||+++|+|+|+-...+. ..++. .+.
T Consensus 303 ~~f~~r~~~~g--~vv~~w~PQ~~-vL~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~ 375 (446)
T PLN00414 303 EGFEERVKGRG--IVWEGWVEQPL-ILSHPSVGCFV----NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEV 375 (446)
T ss_pred hhHHHHhcCCC--eEEeccCCHHH-HhcCCccceEE----ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCe
Confidence 34555554444 66778888886 88777 5577 44556899999999999999866422 11111 111
Q ss_pred ccc-------CCCHHHHHHHHHHHHhCC
Q 003992 648 CLT-------YKTSEDFVARVKEALAND 668 (781)
Q Consensus 648 gv~-------~~D~eeLa~aI~~LL~d~ 668 (781)
|+. .-+.+++.+++++++.++
T Consensus 376 g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 376 SVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred EEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 111 147899999999999865
No 158
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=82.87 E-value=99 Score=35.79 Aligned_cols=241 Identities=14% Similarity=0.178 Sum_probs=118.0
Q ss_pred hHHhhcccCCCcEEEECCCchhH------HHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 003992 411 DTSQFIPSKDADIAILEEPEHLN------WYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRA 483 (781)
Q Consensus 411 ~L~k~I~~~kPDVIhl~~P~~l~------~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~ 483 (781)
.+.+.+++ .|+++......+. .+.. ...++..+ |++..-++. |++.....+.+-+++.+
T Consensus 110 ~~~~~l~~--aDlvI~gGG~lfqD~y~~~~~~y-~l~A~l~gkpv~l~gqsi----------GPf~~~~~r~l~r~vl~- 175 (426)
T PRK10017 110 DFVRLLSG--YDAIIQVGGSFFVDLYGVPQFEH-ALCAFMAKKPLYMIGHSV----------GPFQDEQFNQLANYVFG- 175 (426)
T ss_pred HHHHHHHh--CCEEEECCCCccccCcccHHHHH-HHHHHHcCCCEEEECCcC----------CCcCCHHHHHHHHHHHh-
Confidence 34455554 8998875433221 1111 22445555 766555543 22223333444555544
Q ss_pred cCCEEEEcChhhhhcCCCcE----EeeCCCCCCCCCCCcchh------hHhhhCcCCCCcEEE-EEeeccC-cc------
Q 003992 484 YCDKVLRLSAATQDLPKSVI----CNVHGVNPKFLQIGEKVA------TDREQGQQAFSKGAY-FLGKMVW-AK------ 545 (781)
Q Consensus 484 ~aD~VI~vS~~~k~l~~kiv----vi~nGVD~~~f~p~~~~~------~r~~~Gi~~~~~~IL-fVGRL~~-~K------ 545 (781)
.||.|.+=-...+++.++.. -+.-+.|+.|.-+..... .....+.....+.|. .+..+.+ .|
T Consensus 176 ~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDpAF~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~ 255 (426)
T PRK10017 176 HCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQ 255 (426)
T ss_pred cCCEEEEccHHHHHHHHHhCCCccceEEecChhhhCCccccccccchhhhhhhcccccCCEEEEEecccccccccccccH
Confidence 68987766554444333211 112244665542211100 011112222344443 3333321 11
Q ss_pred -CH-HHHHHHHHHhhccCCCcEEEEEeC-------CCCHHH-HHHHHHhcCCc--EE-EcCCCCCHH--HHHhcccEEEE
Q 003992 546 -GY-RELIDLLAKHKNDLDGFKLDVFGN-------GEDAYE-VQSAAKRLDLN--LN-FQKGRDHAD--DSLHGYKVFIN 610 (781)
Q Consensus 546 -Gi-d~LLeA~~~L~~~~p~i~LvIVG~-------Gp~~~~-L~~~a~~lgL~--V~-FlG~v~~~e--~ly~~ADVfVl 610 (781)
.+ ..+.+++..+.++ +.+++++-. +++... .++......-. ++ .....+..+ .+++.||++|-
T Consensus 256 ~~Y~~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig 333 (426)
T PRK10017 256 QAYEKAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVG 333 (426)
T ss_pred HHHHHHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEE
Confidence 12 3455666666554 444544442 233222 23343433221 22 233333444 88999999985
Q ss_pred ccCCCCChHHHHHHHHhCCcEEEeCCC--Ccceeec--CC-ccccC--CCHHHHHHHHHHHHhCCCCCC
Q 003992 611 PSISDVLCTATAEALAMGKFVICADHP--SNEFFRS--FP-NCLTY--KTSEDFVARVKEALANDPQPL 672 (781)
Q Consensus 611 PS~~EgfGlviLEAMA~G~PVVaSd~g--g~g~L~~--~~-ngv~~--~D~eeLa~aI~~LL~d~~~r~ 672 (781)
.-. -.++=|+++|+|+|+-... ..+++.. .+ .++.. -+.+++.+.+.+++++.+..+
T Consensus 334 ~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~ 397 (426)
T PRK10017 334 TRL-----HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALN 397 (426)
T ss_pred ecc-----hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHH
Confidence 543 4678899999999997553 1133211 11 11222 467789999999998865533
No 159
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=82.45 E-value=19 Score=39.42 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=56.6
Q ss_pred EEEeeccCccCHH--HHHHHHHHhhccCCCcEEEEEeCCCC-HHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEE
Q 003992 536 YFLGKMVWAKGYR--ELIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFIN 610 (781)
Q Consensus 536 LfVGRL~~~KGid--~LLeA~~~L~~~~p~i~LvIVG~Gp~-~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVl 610 (781)
+..|.-...|.+. ...+.+..+.++ +.++++.|+++. .+..++..+ ..-.+.+.|..+-.+ .+++.||+||-
T Consensus 183 ~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~-~~~~~~l~g~~sL~elaali~~a~l~I~ 259 (322)
T PRK10964 183 FLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAE-GFPYVEVLPKLSLEQVARVLAGAKAVVS 259 (322)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHc-cCCcceecCCCCHHHHHHHHHhCCEEEe
Confidence 3444433344433 455555555443 567777644543 344444433 221266777766555 89999999996
Q ss_pred ccCCCCChHHHHHHHHhCCcEEEeCCCCc
Q 003992 611 PSISDVLCTATAEALAMGKFVICADHPSN 639 (781)
Q Consensus 611 PS~~EgfGlviLEAMA~G~PVVaSd~gg~ 639 (781)
.-. - ++==|-|+|+|+|+-=.+.+
T Consensus 260 nDS---G--p~HlA~A~g~p~valfGpt~ 283 (322)
T PRK10964 260 VDT---G--LSHLTAALDRPNITLYGPTD 283 (322)
T ss_pred cCC---c--HHHHHHHhCCCEEEEECCCC
Confidence 642 2 33447889999998754443
No 160
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=82.05 E-value=16 Score=42.75 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=49.4
Q ss_pred EEEcCCCCCHHHHHhc--ccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC----cce-eec-CCccc-------cCCC
Q 003992 589 LNFQKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVICADHPS----NEF-FRS-FPNCL-------TYKT 653 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~--ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg----~g~-L~~-~~ngv-------~~~D 653 (781)
+...++.+..+ ++.. .++|| +-+.-++++||+++|+|+|+-...+ |.. ++. -+.|+ ..-+
T Consensus 345 ~~v~~w~PQ~~-vL~h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~ 419 (477)
T PLN02863 345 LVIRGWAPQVA-ILSHRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPD 419 (477)
T ss_pred EEecCCCCHHH-HhcCCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcC
Confidence 77889998766 7776 56777 4455579999999999999976542 211 111 01111 1236
Q ss_pred HHHHHHHHHHHHh
Q 003992 654 SEDFVARVKEALA 666 (781)
Q Consensus 654 ~eeLa~aI~~LL~ 666 (781)
.+++.+++.+++.
T Consensus 420 ~~~v~~~v~~~m~ 432 (477)
T PLN02863 420 SDELARVFMESVS 432 (477)
T ss_pred HHHHHHHHHHHhh
Confidence 7899999999884
No 161
>PLN00164 glucosyltransferase; Provisional
Probab=82.04 E-value=19 Score=42.13 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=51.6
Q ss_pred EEEcCCCCCHHHHHhccc--EEEEccCCCCChHHHHHHHHhCCcEEEeCCC----Ccce-eec-CCcccc---------C
Q 003992 589 LNFQKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVICADHP----SNEF-FRS-FPNCLT---------Y 651 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~AD--VfVlPS~~EgfGlviLEAMA~G~PVVaSd~g----g~g~-L~~-~~ngv~---------~ 651 (781)
+.+.++.+..+ ++...+ +|| +-+--++++||+++|+|+|+-..- -|.. ++. -+.|+. .
T Consensus 341 ~~v~~w~PQ~~-iL~h~~vg~fv----tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWAPQKE-ILAHAAVGGFV----THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecCCHHH-HhcCcccCeEE----eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 67778888876 888877 465 334457899999999999997553 2221 111 111211 1
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 003992 652 KTSEDFVARVKEALANDP 669 (781)
Q Consensus 652 ~D~eeLa~aI~~LL~d~~ 669 (781)
-+.++++++|.+++.++.
T Consensus 416 ~~~e~l~~av~~vm~~~~ 433 (480)
T PLN00164 416 VEAAELERAVRSLMGGGE 433 (480)
T ss_pred CcHHHHHHHHHHHhcCCc
Confidence 267899999999998764
No 162
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.65 E-value=5.5 Score=36.06 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=51.8
Q ss_pred EEEEeC-CCCHHHHHHHHHhcCCcEEEc---C-CCCCH---HHHHhcccEEEEccCC---CCChHHHHHHHHhCCcEEEe
Q 003992 566 LDVFGN-GEDAYEVQSAAKRLDLNLNFQ---K-GRDHA---DDSLHGYKVFINPSIS---DVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 566 LvIVG~-Gp~~~~L~~~a~~lgL~V~Fl---G-~v~~~---e~ly~~ADVfVlPS~~---EgfGlviLEAMA~G~PVVaS 634 (781)
++|+|+ ......+++.+++.|..+.++ + ..... +..+..+|+.|++..+ ...-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567775 356688999999999985555 2 22232 3677888988888654 33445667788899999998
Q ss_pred CCCC
Q 003992 635 DHPS 638 (781)
Q Consensus 635 d~gg 638 (781)
+..+
T Consensus 82 ~~~~ 85 (97)
T PF10087_consen 82 RSRG 85 (97)
T ss_pred CCCC
Confidence 7554
No 163
>PLN02167 UDP-glycosyltransferase family protein
Probab=80.49 E-value=19 Score=42.05 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=68.7
Q ss_pred EEEEEeecc--CccCHHHHHHHHHHhhccCCCcEEEE-EeCCCC---------HHHHHHHHHhcCCcEEEcCCCCCHHHH
Q 003992 534 GAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDV-FGNGED---------AYEVQSAAKRLDLNLNFQKGRDHADDS 601 (781)
Q Consensus 534 ~ILfVGRL~--~~KGid~LLeA~~~L~~~~p~i~LvI-VG~Gp~---------~~~L~~~a~~lgL~V~FlG~v~~~e~l 601 (781)
+.+..|.+. ..+.+.+++.++.... ..+++ ++.... .+.+.+.++.. ..+.++.+..+ +
T Consensus 283 vyvsfGS~~~~~~~~~~ela~~l~~~~-----~~flw~~~~~~~~~~~~~~~lp~~~~er~~~r---g~v~~w~PQ~~-i 353 (475)
T PLN02167 283 VFLCFGSLGSLPAPQIKEIAQALELVG-----CRFLWSIRTNPAEYASPYEPLPEGFMDRVMGR---GLVCGWAPQVE-I 353 (475)
T ss_pred EEEeecccccCCHHHHHHHHHHHHhCC-----CcEEEEEecCcccccchhhhCChHHHHHhccC---eeeeccCCHHH-H
Confidence 334667653 3455677777766542 23443 332111 12222223222 34568887765 8
Q ss_pred Hhcc--cEEEEccCCCCChHHHHHHHHhCCcEEEeCCC----Ccce-eec-CCcccc-----------CCCHHHHHHHHH
Q 003992 602 LHGY--KVFINPSISDVLCTATAEALAMGKFVICADHP----SNEF-FRS-FPNCLT-----------YKTSEDFVARVK 662 (781)
Q Consensus 602 y~~A--DVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g----g~g~-L~~-~~ngv~-----------~~D~eeLa~aI~ 662 (781)
++.. ++|| +=+.-++++||+++|+|+|+-... -|.. ++. -+.|+. .-+.++++++|.
T Consensus 354 L~h~~vg~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~ 429 (475)
T PLN02167 354 LAHKAIGGFV----SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVR 429 (475)
T ss_pred hcCcccCeEE----eeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHH
Confidence 8774 4677 233346899999999999997553 2221 111 111111 136889999999
Q ss_pred HHHhCC
Q 003992 663 EALAND 668 (781)
Q Consensus 663 ~LL~d~ 668 (781)
+++.++
T Consensus 430 ~~m~~~ 435 (475)
T PLN02167 430 SLMDGE 435 (475)
T ss_pred HHhcCC
Confidence 999764
No 164
>PLN02554 UDP-glycosyltransferase family protein
Probab=80.34 E-value=4.5 Score=47.25 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=47.4
Q ss_pred EEEcCCCCCHHHHH--hcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC----cc-eeec-CCcccc----------
Q 003992 589 LNFQKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVICADHPS----NE-FFRS-FPNCLT---------- 650 (781)
Q Consensus 589 V~FlG~v~~~e~ly--~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg----~g-~L~~-~~ngv~---------- 650 (781)
+.+.++.+..+ ++ ..+.+|| +-+--++++||+.+|+|+|+-...+ |. .++. -+.|+.
T Consensus 344 g~v~~W~PQ~~-iL~H~~v~~Fv----tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~ 418 (481)
T PLN02554 344 GKVIGWAPQVA-VLAKPAIGGFV----THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLL 418 (481)
T ss_pred ceEEeeCCHHH-HhCCcccCccc----ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccccccc
Confidence 45568888665 88 4455577 3444579999999999999986542 22 1111 011110
Q ss_pred -----CCCHHHHHHHHHHHHh
Q 003992 651 -----YKTSEDFVARVKEALA 666 (781)
Q Consensus 651 -----~~D~eeLa~aI~~LL~ 666 (781)
.-+.+++.++|++++.
T Consensus 419 ~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 419 AGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccCeEcHHHHHHHHHHHhc
Confidence 1368899999999996
No 165
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=80.08 E-value=13 Score=43.20 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred EEEcCCCCCHHHHHhcccE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----ce-eecC-Ccccc---CCCHHHH
Q 003992 589 LNFQKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVICADHPSN----EF-FRSF-PNCLT---YKTSEDF 657 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g~-L~~~-~ngv~---~~D~eeL 657 (781)
....++.+..+ ++...++ || +-+.-++++||+++|+|+|+-...+. .. +... ..|+. .-+.+++
T Consensus 326 g~v~~w~PQ~~-iL~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v 400 (451)
T PLN02410 326 GYIVKWAPQKE-VLSHPAVGGFW----SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAV 400 (451)
T ss_pred eEEEccCCHHH-HhCCCccCeee----ecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHH
Confidence 45558888776 8877555 77 33445799999999999999866432 11 1110 12211 2478899
Q ss_pred HHHHHHHHhCCC
Q 003992 658 VARVKEALANDP 669 (781)
Q Consensus 658 a~aI~~LL~d~~ 669 (781)
+++|++++.+++
T Consensus 401 ~~av~~lm~~~~ 412 (451)
T PLN02410 401 ERAVKRLMVEEE 412 (451)
T ss_pred HHHHHHHHcCCc
Confidence 999999998764
No 166
>PLN02173 UDP-glucosyl transferase family protein
Probab=80.05 E-value=12 Score=43.44 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=51.8
Q ss_pred EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eeecC-Ccccc--------CCCH
Q 003992 589 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----E-FFRSF-PNCLT--------YKTS 654 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~~-~ngv~--------~~D~ 654 (781)
+.+.++.+..+ +++...+-.+- +-+-.++++||+++|+|+|+-..-+. . .++.. ..|+. .-+.
T Consensus 319 ~~i~~W~PQ~~-iL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~ 395 (449)
T PLN02173 319 SLVLKWSPQLQ-VLSNKAIGCFM--THCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKR 395 (449)
T ss_pred eEEeCCCCHHH-HhCCCccceEE--ecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccH
Confidence 67779988665 88887733333 33556899999999999999865422 1 11110 11111 1268
Q ss_pred HHHHHHHHHHHhCCC
Q 003992 655 EDFVARVKEALANDP 669 (781)
Q Consensus 655 eeLa~aI~~LL~d~~ 669 (781)
+++.+++++++.+++
T Consensus 396 e~v~~av~~vm~~~~ 410 (449)
T PLN02173 396 EEIEFSIKEVMEGEK 410 (449)
T ss_pred HHHHHHHHHHhcCCh
Confidence 999999999998753
No 167
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=76.98 E-value=4.3 Score=40.32 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=44.8
Q ss_pred HhHHhhcccCCCcEEEECCCchhHH-HHHHHHHHhhc-CCEEEEEECCcHH-HHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 003992 410 GDTSQFIPSKDADIAILEEPEHLNW-YHHGKRWTDKF-NHVVGVVHTNYLE-YIKREKNGALQAFFVKHINNWVTRAYCD 486 (781)
Q Consensus 410 ~~L~k~I~~~kPDVIhl~~P~~l~~-~~~g~~~akk~-~pvV~ivHt~y~~-y~~~~~~~~~~~~l~k~l~r~l~r~~aD 486 (781)
..+.++|++++||+|++..|..... +. .++..... ++.+.++.|+|.. +. .|+.. .+|
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~-~lk~~~~~~~~p~~tvvTD~~~~H~-----------------~W~~~-~~D 139 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLS-RLKRRGRLPNIPVVTVVTDFDTVHP-----------------FWIHP-GVD 139 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHH-HHHHhhcccCCcEEEEEcCCCCCCc-----------------CeecC-CCC
Confidence 4688999999999999999875544 32 12223334 3444567777621 21 12223 699
Q ss_pred EEEEcChhhhh
Q 003992 487 KVLRLSAATQD 497 (781)
Q Consensus 487 ~VI~vS~~~k~ 497 (781)
..++.|+.+++
T Consensus 140 ~y~Vase~~~~ 150 (169)
T PF06925_consen 140 RYFVASEEVKE 150 (169)
T ss_pred EEEECCHHHHH
Confidence 99999998876
No 168
>PLN02210 UDP-glucosyl transferase
Probab=75.96 E-value=25 Score=40.93 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=49.1
Q ss_pred EcCCCCCHHHHHhccc--EEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eeec-CCcccc--------CCCH
Q 003992 591 FQKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVICADHPSN----E-FFRS-FPNCLT--------YKTS 654 (781)
Q Consensus 591 FlG~v~~~e~ly~~AD--VfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~-~~ngv~--------~~D~ 654 (781)
..++.+..+ +++.+. +|| +-+--++++||+++|+|+|+-...+. . .+.. .+.|+. .-+.
T Consensus 328 v~~w~PQ~~-iL~h~~vg~Fi----tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~ 402 (456)
T PLN02210 328 VLEWSPQEK-ILSHMAISCFV----THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKV 402 (456)
T ss_pred EEecCCHHH-HhcCcCcCeEE----eeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCH
Confidence 458888776 888887 666 22334689999999999999866432 1 1111 111111 1377
Q ss_pred HHHHHHHHHHHhCCC
Q 003992 655 EDFVARVKEALANDP 669 (781)
Q Consensus 655 eeLa~aI~~LL~d~~ 669 (781)
++++++|++++.++.
T Consensus 403 ~~l~~av~~~m~~~~ 417 (456)
T PLN02210 403 EEVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHHHHhcCch
Confidence 899999999997653
No 169
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=75.91 E-value=89 Score=34.27 Aligned_cols=234 Identities=19% Similarity=0.222 Sum_probs=103.8
Q ss_pred HHhhcccCCCcEEEECCC-------chhHHHHHHHHHHhhcC---CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHH
Q 003992 412 TSQFIPSKDADIAILEEP-------EHLNWYHHGKRWTDKFN---HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVT 481 (781)
Q Consensus 412 L~k~I~~~kPDVIhl~~P-------~~l~~~~~g~~~akk~~---pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~ 481 (781)
+.+.+. ++||+++.+. ...+.|. +..++.. .+|+..|.+---.+. ++. .++..+.
T Consensus 55 ~v~~vN--~yDI~m~nSvPa~~vqE~~iNnY~---kii~~Ik~~ik~V~~~Hdh~~lsI~--rn~--------~le~~m~ 119 (355)
T PF11440_consen 55 TVKKVN--DYDIVMFNSVPATKVQEAIINNYE---KIIKKIKPSIKVVGFMHDHNKLSID--RNP--------YLEGTMN 119 (355)
T ss_dssp HHHHHT--SSSEEEEEE--BTTS-HHHHHHHH---HHHHCS-TTSEEEEEE---SHHHHT--TBS--------SHHHHHH
T ss_pred HHHHhh--ccCEEEEecccCchHHHHHHHHHH---HHHHhccccceeEEEeeccceeecc--ccc--------cHHHHHH
Confidence 334444 6898887652 2344443 3344444 457788875322221 121 1233343
Q ss_pred HhcCCEEEEcChhh---h----h-cCCCcEEeeCCCC--CCC--CCC-CcchhhHhhhCcCCCCcEE---EEEeeccCcc
Q 003992 482 RAYCDKVLRLSAAT---Q----D-LPKSVICNVHGVN--PKF--LQI-GEKVATDREQGQQAFSKGA---YFLGKMVWAK 545 (781)
Q Consensus 482 r~~aD~VI~vS~~~---k----~-l~~kivvi~nGVD--~~~--f~p-~~~~~~r~~~Gi~~~~~~I---LfVGRL~~~K 545 (781)
+ ||.|++-|... + + +|.+. .+.+-+. |.. |++ .+....+..+......+.. +|+||..-.|
T Consensus 120 ~--~DvIfshs~~g~f~kv~m~~l~Ps~~-~l~~~i~~~p~v~nfqpp~~i~~~Rstywkd~se~nmnv~~yigR~Tt~k 196 (355)
T PF11440_consen 120 E--MDVIFSHSDNGWFSKVLMKELLPSKV-SLFDRIKKFPMVFNFQPPMDINKYRSTYWKDVSEKNMNVNRYIGRQTTWK 196 (355)
T ss_dssp H---SEEEES-TTSHHHHTHHHHHS-SS---SSS-------EEE----B-HHHHHHHH---GGGSEEEEEEEE--SSGGG
T ss_pred h--hcEEEeccccchHHHHHHHhhccccC-chhhhhhhcceeeecCCcccHHHHHHHHhhhhHhhhcccceeeeeeeeec
Confidence 3 99999988732 2 2 23221 0111110 000 122 1222334444433223333 7999999999
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCc-------------------EEEcCCCCCHH--HHHhc
Q 003992 546 GYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLN-------------------LNFQKGRDHAD--DSLHG 604 (781)
Q Consensus 546 Gid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~-------------------V~FlG~v~~~e--~ly~~ 604 (781)
|+..+++.-+++.+. ++++-++-|=-..-+.+ -+.+.++. +..+|.--..+ +.|+.
T Consensus 197 G~~~mfD~h~~~lK~-~~~~t~~~GierS~A~~--~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Mak 273 (355)
T PF11440_consen 197 GPRRMFDLHEKILKP-AGFKTIMEGIERSPAKI--SIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAK 273 (355)
T ss_dssp -HHHHHHHHHHTTTT-TT-EEEEE---SSTHHH--HHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHT
T ss_pred CcHHHhhhHHHhcCC-cchhHHhhhhhcCCcee--eeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhh
Confidence 999999999887665 78888888832221111 12223322 44555433344 44555
Q ss_pred ccEEEEccC------CCCChHHHHHHHHhCC-cEEEeCCCCc--------ceeecCCccccC---CCHHHHHHHHHHHHh
Q 003992 605 YKVFINPSI------SDVLCTATAEALAMGK-FVICADHPSN--------EFFRSFPNCLTY---KTSEDFVARVKEALA 666 (781)
Q Consensus 605 ADVfVlPS~------~EgfGlviLEAMA~G~-PVVaSd~gg~--------g~L~~~~ngv~~---~D~eeLa~aI~~LL~ 666 (781)
+-..+.-+. .+.+-.+-+|..|||. ||.-...|.+ .+ ...+.+..+ +|.++-.+.|.++.+
T Consensus 274 s~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~-~~~~~~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 274 SLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRY-IDHPYSAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp EEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBG-GSS--S-EEE-TTSHHHHHHHHHHHHT
T ss_pred ccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCcee-eccCcceeEeccchHHHHHHHHHHHhc
Confidence 443333331 3457788999999998 6665555533 22 223333333 666666666666654
Q ss_pred C
Q 003992 667 N 667 (781)
Q Consensus 667 d 667 (781)
+
T Consensus 353 ~ 353 (355)
T PF11440_consen 353 N 353 (355)
T ss_dssp -
T ss_pred c
Confidence 4
No 170
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=75.80 E-value=14 Score=40.97 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=60.3
Q ss_pred CcEEEEEeeccCccCHH--HHHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCC-c-EEEcCCCCCHH--HHHh
Q 003992 532 SKGAYFLGKMVWAKGYR--ELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDL-N-LNFQKGRDHAD--DSLH 603 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGid--~LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL-~-V~FlG~v~~~e--~ly~ 603 (781)
..+++..|.-.+.|.+. ...+.+..+.+. +.+++++|+..+ .+..++.++.... . +.+.|..+-.+ ++++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 44556777655566543 555555665433 578888875322 2223444432221 2 55677766555 8999
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICADHPS 638 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg 638 (781)
.||+||-.- +.++=+ |.|+|+|+|+-=.+.
T Consensus 262 ~a~l~v~nD---SGp~Hl--AaA~g~P~v~lfGpt 291 (352)
T PRK10422 262 HAQLFIGVD---SAPAHI--AAAVNTPLICLFGAT 291 (352)
T ss_pred hCCEEEecC---CHHHHH--HHHcCCCEEEEECCC
Confidence 999999654 333333 568899999874443
No 171
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=75.53 E-value=35 Score=37.77 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=59.6
Q ss_pred cEEEEEeec-cCccCH--HHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCC----c-EEEcCCCCCHH--HHH
Q 003992 533 KGAYFLGKM-VWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDL----N-LNFQKGRDHAD--DSL 602 (781)
Q Consensus 533 ~~ILfVGRL-~~~KGi--d~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL----~-V~FlG~v~~~e--~ly 602 (781)
.+++..|.- .+.|.+ +...+.+..+.+ .++++++.|+..+++..++.....+. . +.+.|..+-.+ +++
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 344566653 345544 344555555543 36788999876666555555443321 1 45567665444 899
Q ss_pred hcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 603 HGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 603 ~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+.||+||-.- +-++ ==|.|.|+|+|+--.+
T Consensus 260 ~~a~l~I~nD---TGp~--HlAaA~g~P~valfGp 289 (348)
T PRK10916 260 AACKAIVTND---SGLM--HVAAALNRPLVALYGP 289 (348)
T ss_pred HhCCEEEecC---ChHH--HHHHHhCCCEEEEECC
Confidence 9999999654 3333 3468899999986443
No 172
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=72.49 E-value=23 Score=42.05 Aligned_cols=147 Identities=24% Similarity=0.258 Sum_probs=94.0
Q ss_pred CcEEEEEeeccC-ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEE
Q 003992 532 SKGAYFLGKMVW-AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVF 608 (781)
Q Consensus 532 ~~~ILfVGRL~~-~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVf 608 (781)
++..+..|+-.. .||-+..++++.+. -+++-.|.+.-.....+-.. |.=+|..+..+ .+++.+.||
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~~----~eih~tV~~~~~~~~~~P~~-------V~NHG~l~~~ef~~lL~~akvf 345 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHKY----MEIHGTVYDEPQRPPNVPSF-------VKNHGILSGDEFQQLLRKAKVF 345 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHhh----cEEEEEeccCCCCCcccchh-------hhhcCcCCHHHHHHHHHhhhEe
Confidence 345566676543 56778888887654 24555554432211122222 55577777666 899999999
Q ss_pred EEcc-CCCCChHHHHHHHHhCCcEEEeCCC-----Cc-----------------ce---eecCCcc--ccCCCHHHHHHH
Q 003992 609 INPS-ISDVLCTATAEALAMGKFVICADHP-----SN-----------------EF---FRSFPNC--LTYKTSEDFVAR 660 (781)
Q Consensus 609 VlPS-~~EgfGlviLEAMA~G~PVVaSd~g-----g~-----------------g~---L~~~~ng--v~~~D~eeLa~a 660 (781)
|=-. -+| |=+-+||+|+|+|.|-.... .+ .+ +.+.+.. |..+|.+++.+|
T Consensus 346 iGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~A 423 (559)
T PF15024_consen 346 IGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAA 423 (559)
T ss_pred eecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHH
Confidence 9332 233 34689999999999977431 00 11 1122222 444999999999
Q ss_pred HHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHhh
Q 003992 661 VKEALANDPQPLTPEQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 661 I~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Ye 694 (781)
|+++|+++.. ......||-+.+.+|+-.+.+
T Consensus 424 vk~il~~~v~---Py~P~efT~egmLeRv~~~ie 454 (559)
T PF15024_consen 424 VKAILATPVE---PYLPYEFTCEGMLERVNALIE 454 (559)
T ss_pred HHHHHhcCCC---CcCCcccCHHHHHHHHHHHHH
Confidence 9999998743 234567999999999977766
No 173
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=72.15 E-value=7.1 Score=39.47 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=50.5
Q ss_pred cCCCcEEEECCCchhHHHHHHHHHHhhcC--CEEEEEECCcHH------HHHHhhcchhHHHH---HHHHHHHHHHhcCC
Q 003992 418 SKDADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLE------YIKREKNGALQAFF---VKHINNWVTRAYCD 486 (781)
Q Consensus 418 ~~kPDVIhl~~P~~l~~~~~g~~~akk~~--pvV~ivHt~y~~------y~~~~~~~~~~~~l---~k~l~r~l~r~~aD 486 (781)
-+.||||+.|..+.-+. .+...+. |+++.+--.|.. +-..+ ........ .+.+..++.-..||
T Consensus 64 Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~-p~~~~~~~~~r~rN~~~l~~l~~~D 137 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGYFEFYYRASGADVGFDPEF-PPSLDDRARLRMRNAHNLLALEQAD 137 (171)
T ss_pred CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEEEEEEecCCCCcCCCCCCC-CCCHHHHHHHHHHhHHHHHHHHhCC
Confidence 47899999997554433 3345553 666554321110 00000 01111122 22222333333599
Q ss_pred EEEEcChhhhh-cC----CCcEEeeCCCCCCCC
Q 003992 487 KVLRLSAATQD-LP----KSVICNVHGVNPKFL 514 (781)
Q Consensus 487 ~VI~vS~~~k~-l~----~kivvi~nGVD~~~f 514 (781)
..|++|...++ +| .++.|+..|||++.+
T Consensus 138 ~~isPT~wQ~~~fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 138 AGISPTRWQRSQFPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred cCcCCCHHHHHhCCHHHHcCcEEeecccchhhc
Confidence 99999997766 33 588999999998765
No 174
>PLN02207 UDP-glycosyltransferase
Probab=70.89 E-value=28 Score=40.75 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=67.6
Q ss_pred EEEEeecc--CccCHHHHHHHHHHhhccCCCcEEEEEeCCCC--H----HHHHHHHHhcCCcEEEcCCCCCHHHHHhccc
Q 003992 535 AYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNGED--A----YEVQSAAKRLDLNLNFQKGRDHADDSLHGYK 606 (781)
Q Consensus 535 ILfVGRL~--~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~--~----~~L~~~a~~lgL~V~FlG~v~~~e~ly~~AD 606 (781)
.+..|.+. ..+.+..++.++..... .+ +..+.+... . +.+++..+. ++...++.+..+ +++...
T Consensus 279 yvSfGS~~~~~~~q~~ela~~l~~~~~---~f-lW~~r~~~~~~~~~lp~~f~er~~~---~g~i~~W~PQ~~-IL~H~~ 350 (468)
T PLN02207 279 FLCFGSMGRLRGPLVKEIAHGLELCQY---RF-LWSLRTEEVTNDDLLPEGFLDRVSG---RGMICGWSPQVE-ILAHKA 350 (468)
T ss_pred EEEeccCcCCCHHHHHHHHHHHHHCCC---cE-EEEEeCCCccccccCCHHHHhhcCC---CeEEEEeCCHHH-Hhcccc
Confidence 34666553 34456677777766522 22 223332111 1 223222222 244558888776 777766
Q ss_pred E--EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----ce-eec-CCccc-----------cCCCHHHHHHHHHHHHh
Q 003992 607 V--FINPSISDVLCTATAEALAMGKFVICADHPSN----EF-FRS-FPNCL-----------TYKTSEDFVARVKEALA 666 (781)
Q Consensus 607 V--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g~-L~~-~~ngv-----------~~~D~eeLa~aI~~LL~ 666 (781)
+ || +-+.-++++||+.+|+|+|+-...+. .. ++. .+.|+ ..-+.+++.++|++++.
T Consensus 351 vg~Fv----TH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 351 VGGFV----SHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cceee----ecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 5 66 33444689999999999999866432 11 111 11111 12377899999999996
No 175
>PLN02534 UDP-glycosyltransferase
Probab=70.32 E-value=69 Score=37.76 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=50.8
Q ss_pred EEEcCCCCCHHHHHhcccE--EEEccCCCCChHHHHHHHHhCCcEEEeCCCCc--------------ceeec-C------
Q 003992 589 LNFQKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVICADHPSN--------------EFFRS-F------ 645 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADV--fVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~--------------g~L~~-~------ 645 (781)
+.+.|+.+..+ ++...++ || +-+-.++++||+++|+|+|+-...+. |.-.+ .
T Consensus 346 ~~v~~w~pq~~-iL~h~~v~~fv----tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~ 420 (491)
T PLN02534 346 LLIKGWAPQVL-ILSHPAIGGFL----THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWG 420 (491)
T ss_pred eeccCCCCHHH-HhcCCccceEE----ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccccc
Confidence 77789988865 8888887 66 44566899999999999999866422 21111 0
Q ss_pred -Cccc-cCCCHHHHHHHHHHHHh
Q 003992 646 -PNCL-TYKTSEDFVARVKEALA 666 (781)
Q Consensus 646 -~ngv-~~~D~eeLa~aI~~LL~ 666 (781)
.+.. ..-+.++++++|++++.
T Consensus 421 ~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 421 DEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccCccCHHHHHHHHHHHhc
Confidence 0000 02368899999999996
No 176
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=69.19 E-value=24 Score=38.85 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=58.8
Q ss_pred cEEEEEeeccCccCH--HHHHHHHHHhhccCCCcEEEEEeCCCC-H-HHHHHHHHhcCCc--EEEcCCCCCHH--HHHhc
Q 003992 533 KGAYFLGKMVWAKGY--RELIDLLAKHKNDLDGFKLDVFGNGED-A-YEVQSAAKRLDLN--LNFQKGRDHAD--DSLHG 604 (781)
Q Consensus 533 ~~ILfVGRL~~~KGi--d~LLeA~~~L~~~~p~i~LvIVG~Gp~-~-~~L~~~a~~lgL~--V~FlG~v~~~e--~ly~~ 604 (781)
.+++..|.-.+.|.+ +...+.+..+.+. +..++++|+..+ . +..++.....+.. +.+.|..+-.+ ++++.
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 445666654455544 3455555555443 578889985432 2 2334443333322 55677766555 89999
Q ss_pred ccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 605 YKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 605 ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
||+||-.- +.+ +==|.|+|+|+|+--.+
T Consensus 261 a~l~Vs~D---SGp--~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 261 ARLFIGVD---SVP--MHMAAALGTPLVALFGP 288 (344)
T ss_pred CCEEEecC---CHH--HHHHHHcCCCEEEEECC
Confidence 99999663 333 34478899999987443
No 177
>PRK14986 glycogen phosphorylase; Provisional
Probab=68.42 E-value=12 Score=46.36 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=87.2
Q ss_pred CCCCcEEEEEeeccCccCHHH-HHHH---HHHhhccC----CCcEEEEEeCCC---CH-HHHHH----HHH------hc-
Q 003992 529 QAFSKGAYFLGKMVWAKGYRE-LIDL---LAKHKNDL----DGFKLDVFGNGE---DA-YEVQS----AAK------RL- 585 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~-LLeA---~~~L~~~~----p~i~LvIVG~Gp---~~-~~L~~----~a~------~l- 585 (781)
.++...++++=|+...|...+ ++.. +.++++.- ...++++.|.-. .. ..+.+ .++ ..
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 455556678889999999988 5555 44454331 237788888532 21 22222 222 11
Q ss_pred -CCcEEEcCCCC--CHHHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCCCcceee---cCCccccC-CCHHH
Q 003992 586 -DLNLNFQKGRD--HADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTY-KTSED 656 (781)
Q Consensus 586 -gL~V~FlG~v~--~~e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~gg~g~L~---~~~ngv~~-~D~ee 656 (781)
.+.|.|+..-+ .++.++.++||....|+ .|.-|+.-+=||.-|.+-++|--|.+-++. ++.|++.+ .+.++
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~e 699 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEE 699 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHH
Confidence 12488877544 34489999999999987 699999999999999999999888774433 36788777 44444
Q ss_pred HHH
Q 003992 657 FVA 659 (781)
Q Consensus 657 La~ 659 (781)
+.+
T Consensus 700 v~~ 702 (815)
T PRK14986 700 VEA 702 (815)
T ss_pred HHH
Confidence 433
No 178
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=66.73 E-value=61 Score=37.84 Aligned_cols=128 Identities=15% Similarity=0.069 Sum_probs=71.2
Q ss_pred EEEEEeecc--CccCHHHHHHHHHHhhccCCCcEEEEEeCC---------CCHHH---HHHHHHhcCCcEEEcCCCCCHH
Q 003992 534 GAYFLGKMV--WAKGYRELIDLLAKHKNDLDGFKLDVFGNG---------EDAYE---VQSAAKRLDLNLNFQKGRDHAD 599 (781)
Q Consensus 534 ~ILfVGRL~--~~KGid~LLeA~~~L~~~~p~i~LvIVG~G---------p~~~~---L~~~a~~lgL~V~FlG~v~~~e 599 (781)
+.+..|.+. ..+.+.++..++..... .+-.+ +.+. ..... .+...++..-+..+.++.+..+
T Consensus 264 vyvsfGS~~~l~~~q~~ela~gL~~s~~---~flWv-~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~ 339 (455)
T PLN02152 264 IYVSFGTMVELSKKQIEELARALIEGKR---PFLWV-ITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIE 339 (455)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHcCC---CeEEE-EecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHH
Confidence 334667653 45667777777776532 23222 3321 11001 1122222222245568887665
Q ss_pred HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc----c-eeec---CCcccc-----CCCHHHHHHHHHHHHh
Q 003992 600 DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN----E-FFRS---FPNCLT-----YKTSEDFVARVKEALA 666 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~----g-~L~~---~~ngv~-----~~D~eeLa~aI~~LL~ 666 (781)
+++...+-++-+ -+-.++++||+.+|+|+|+-...+. . .+.. .+-++. .-+.++++++|.++++
T Consensus 340 -iL~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~ 416 (455)
T PLN02152 340 -VLRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVME 416 (455)
T ss_pred -HhCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHh
Confidence 888888533333 3455789999999999999865422 1 1111 001111 2368999999999997
Q ss_pred CC
Q 003992 667 ND 668 (781)
Q Consensus 667 d~ 668 (781)
++
T Consensus 417 ~~ 418 (455)
T PLN02152 417 EK 418 (455)
T ss_pred hh
Confidence 54
No 179
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=65.38 E-value=19 Score=44.24 Aligned_cols=123 Identities=13% Similarity=-0.009 Sum_probs=82.4
Q ss_pred CCCcEEEEEeeccCccCHHHHHHHH----HHhh-ccCCCcEEEEEeCCCCH----HHHH----HHHHhc--CCcEEEcCC
Q 003992 530 AFSKGAYFLGKMVWAKGYRELIDLL----AKHK-NDLDGFKLDVFGNGEDA----YEVQ----SAAKRL--DLNLNFQKG 594 (781)
Q Consensus 530 ~~~~~ILfVGRL~~~KGid~LLeA~----~~L~-~~~p~i~LvIVG~Gp~~----~~L~----~~a~~l--gL~V~FlG~ 594 (781)
++...++++=|+...|...+.+.-. ..++ +..|.+.+++.|.-... ..+. ..++.- .+.|.|+..
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 4556678888999999887655443 3344 23355777777753221 2222 223322 244888875
Q ss_pred CC--CHHHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCCCcceee---cCCccccCC
Q 003992 595 RD--HADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFFR---SFPNCLTYK 652 (781)
Q Consensus 595 v~--~~e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~gg~g~L~---~~~ngv~~~ 652 (781)
-+ -.+.++.+|||-.+.|+ .|.-|+.-+=||.-|.+-|+|--|.+-+.. ++.|++.++
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG 629 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFG 629 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeC
Confidence 44 33488999999999886 599999999999999999999887663333 566666663
No 180
>PLN03015 UDP-glucosyl transferase
Probab=63.50 E-value=1.2e+02 Score=35.70 Aligned_cols=75 Identities=13% Similarity=-0.012 Sum_probs=48.4
Q ss_pred EEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc--------------ceeecCCccccCCCH
Q 003992 589 LNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN--------------EFFRSFPNCLTYKTS 654 (781)
Q Consensus 589 V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~--------------g~L~~~~ngv~~~D~ 654 (781)
+.+.++.+..+ ++....+-.+- +-+--++++||+++|+|+|+-..-+. |.-....+.-..-+.
T Consensus 337 l~v~~W~PQ~~-vL~h~~vg~fv--tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~ 413 (470)
T PLN03015 337 LVVTQWAPQVE-ILSHRSIGGFL--SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGR 413 (470)
T ss_pred eEEEecCCHHH-HhccCccCeEE--ecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCH
Confidence 66778888776 77766553322 33445789999999999999866421 221110000012467
Q ss_pred HHHHHHHHHHHh
Q 003992 655 EDFVARVKEALA 666 (781)
Q Consensus 655 eeLa~aI~~LL~ 666 (781)
+++.++|++++.
T Consensus 414 e~i~~~v~~lm~ 425 (470)
T PLN03015 414 EEVASLVRKIVA 425 (470)
T ss_pred HHHHHHHHHHHc
Confidence 899999999996
No 181
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=63.39 E-value=42 Score=41.16 Aligned_cols=129 Identities=17% Similarity=0.116 Sum_probs=75.2
Q ss_pred CCCCcEEEEEeeccCccCHHHH----HHHHHHhhcc----CCCcEEEEEeCCCC-H---HHHHHHHHh----------cC
Q 003992 529 QAFSKGAYFLGKMVWAKGYREL----IDLLAKHKND----LDGFKLDVFGNGED-A---YEVQSAAKR----------LD 586 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~L----LeA~~~L~~~----~p~i~LvIVG~Gp~-~---~~L~~~a~~----------lg 586 (781)
.++...++++-|+...|...+. +..+.++++. ...+++++.|.-.. . .++.+++.. .+
T Consensus 441 dp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 441 DPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp -TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTC
T ss_pred CcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhc
Confidence 4555667899999999998883 3445555543 12377888885322 1 223332211 11
Q ss_pred --CcEEEcCCCCC--HHHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCCCccee---ecCCccccC-CCHHH
Q 003992 587 --LNLNFQKGRDH--ADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFF---RSFPNCLTY-KTSED 656 (781)
Q Consensus 587 --L~V~FlG~v~~--~e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~gg~g~L---~~~~ngv~~-~D~ee 656 (781)
+.|.|+..-+- ++.++.++||..+.|+ .|.-|+.-+=||.-|.+-+++-.|.+-++ ++..|.+.+ .+.++
T Consensus 521 ~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~e 600 (713)
T PF00343_consen 521 DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEE 600 (713)
T ss_dssp CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHH
T ss_pred cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHH
Confidence 24888876443 3488999999999986 69999999999999999999988876433 234555555 44444
Q ss_pred H
Q 003992 657 F 657 (781)
Q Consensus 657 L 657 (781)
+
T Consensus 601 v 601 (713)
T PF00343_consen 601 V 601 (713)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>PLN02555 limonoid glucosyltransferase
Probab=62.99 E-value=50 Score=38.79 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=49.3
Q ss_pred EEEcCCCCCHHHHH--hcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCC--------------cceeecC-CccccC
Q 003992 589 LNFQKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVICADHPS--------------NEFFRSF-PNCLTY 651 (781)
Q Consensus 589 V~FlG~v~~~e~ly--~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg--------------~g~L~~~-~ngv~~ 651 (781)
+.+.++.+..+ ++ .++.+|| +-+--++++||+++|+|+|+-..-+ .|.-... ......
T Consensus 339 g~v~~W~PQ~~-iL~H~~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~ 413 (480)
T PLN02555 339 GKIVQWCPQEK-VLAHPSVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKL 413 (480)
T ss_pred eEEEecCCHHH-HhCCCccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCc
Confidence 56668887765 77 4466777 4455679999999999999986642 1222110 000001
Q ss_pred CCHHHHHHHHHHHHhCC
Q 003992 652 KTSEDFVARVKEALAND 668 (781)
Q Consensus 652 ~D~eeLa~aI~~LL~d~ 668 (781)
-+.+++.++|++++.++
T Consensus 414 v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 414 ITREEVAECLLEATVGE 430 (480)
T ss_pred CcHHHHHHHHHHHhcCc
Confidence 26789999999999764
No 183
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=61.36 E-value=28 Score=43.15 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=86.4
Q ss_pred CCCCcEEEEEeeccCccCHHH-HHHH---HHHhhccCC-----CcEEEEEeCCCC---H-HHHHH----HHHh------c
Q 003992 529 QAFSKGAYFLGKMVWAKGYRE-LIDL---LAKHKNDLD-----GFKLDVFGNGED---A-YEVQS----AAKR------L 585 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~-LLeA---~~~L~~~~p-----~i~LvIVG~Gp~---~-~~L~~----~a~~------l 585 (781)
.++...++++=|+...|...+ ++.. +.++++. | ...+++.|.-.. . ..+.+ .++. .
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 605 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKEN-PNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDV 605 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhC-CCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhc
Confidence 455667788999999999988 5554 5555543 3 267777775322 1 22222 2221 1
Q ss_pred --CCcEEEcCCCC--CHHHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCCCccee---ecCCccccC-CCHH
Q 003992 586 --DLNLNFQKGRD--HADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFF---RSFPNCLTY-KTSE 655 (781)
Q Consensus 586 --gL~V~FlG~v~--~~e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~gg~g~L---~~~~ngv~~-~D~e 655 (781)
.+.|.|+..-+ .++.++.+|||....|+ .|.-|+.-+=+|.-|.+.++|--|.+-++ ++..|++.+ .+.+
T Consensus 606 ~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ 685 (797)
T cd04300 606 GDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAE 685 (797)
T ss_pred CCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHH
Confidence 12488877544 34589999999999987 69999999999999999999988877332 346677777 4444
Q ss_pred HHH
Q 003992 656 DFV 658 (781)
Q Consensus 656 eLa 658 (781)
+..
T Consensus 686 ev~ 688 (797)
T cd04300 686 EVE 688 (797)
T ss_pred HHH
Confidence 433
No 184
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.22 E-value=28 Score=41.77 Aligned_cols=170 Identities=10% Similarity=0.014 Sum_probs=101.3
Q ss_pred hHhhhCcCCCCcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeC-CCCHHHHHHHHHhcCCc---EEEcCCCCC
Q 003992 522 TDREQGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGN-GEDAYEVQSAAKRLDLN---LNFQKGRDH 597 (781)
Q Consensus 522 ~r~~~Gi~~~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~-Gp~~~~L~~~a~~lgL~---V~FlG~v~~ 597 (781)
.+..++++++..+...+-.+ .|=-...++.|.++.+.-|+-.|.+.-- --....+++.+.+.|++ |.|..-...
T Consensus 749 ~r~~y~Lp~d~vvf~~FNqL--yKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 749 TRSQYGLPEDAVVFCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCCCCCCCCCeEEEeechhh--hcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccch
Confidence 56678887764433333332 3333467888888888889877766532 11126788889999998 888876555
Q ss_pred HH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc------ceeec-CCccccCCCHHHHHHHHHHHHhCC
Q 003992 598 AD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------EFFRS-FPNCLTYKTSEDFVARVKEALAND 668 (781)
Q Consensus 598 ~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~------g~L~~-~~ngv~~~D~eeLa~aI~~LL~d~ 668 (781)
.+ .-++-+||.+-+-..-|- ++-+|.+.+|+|+|+-..... ..+.. +-.-+...+.++..+.-.+|-.|.
T Consensus 827 ~eHvrr~~LaDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~ 905 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDK 905 (966)
T ss_pred HHHHHhhhhhhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCH
Confidence 44 567778988865554442 456899999999998643211 01100 101134467777777666666665
Q ss_pred CCCCCh--H------HHHcCCHHHHHHHHHHHhh
Q 003992 669 PQPLTP--E------QRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 669 ~~r~~m--~------~~~~fSWe~iaerll~~Ye 694 (781)
+...++ + ..--|+-...+..+.+.|.
T Consensus 906 ~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~ 939 (966)
T KOG4626|consen 906 EYLKKLRAKLRKARASSPLFDTKQYAKGLERLYL 939 (966)
T ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHH
Confidence 543333 1 1123555555555555554
No 185
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=59.54 E-value=21 Score=37.01 Aligned_cols=120 Identities=14% Similarity=-0.017 Sum_probs=64.9
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCc---EEEcCC-CCCHH-HHHhcccEEEEccCCCCC
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKG-RDHAD-DSLHGYKVFINPSISDVL 617 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~---V~FlG~-v~~~e-~ly~~ADVfVlPS~~Egf 617 (781)
.|=+..|..|+.-+..-. .-++++||.-+.. ..+++.++..|-. -+|+|+ ..+.. .-+..=|++++....+ =
T Consensus 43 ~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~-~ 120 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA-D 120 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc-c
Confidence 344455555554443332 4578899977654 4455666655544 356654 22322 3345556666544322 2
Q ss_pred hHHHHHHHHhCCcEEEe-CCCCcceeecCCccccC-CCHHHHHHHHHHHHhC
Q 003992 618 CTATAEALAMGKFVICA-DHPSNEFFRSFPNCLTY-KTSEDFVARVKEALAN 667 (781)
Q Consensus 618 GlviLEAMA~G~PVVaS-d~gg~g~L~~~~ngv~~-~D~eeLa~aI~~LL~d 667 (781)
..++.||..+|+|||+- |...+.-+++.+ ++. +|.-.-..-+..++.+
T Consensus 121 ~~Av~EA~~l~IP~Iai~DTn~dp~~vdyp--IP~Ndds~~Si~li~~lla~ 170 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCDTDNPLRYVDLV--IPTNNKGRHSLALIYWLLAR 170 (196)
T ss_pred cHHHHHHHHcCCCEEEEeeCCCCCccCCEE--ECCCCchHHHHHHHHHHHHH
Confidence 57899999999999997 444433322211 444 3333444444444443
No 186
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=57.91 E-value=88 Score=34.47 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=35.5
Q ss_pred CCCCEEEEE-eCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcccc
Q 003992 307 DKKRNVAIV-TTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVY 361 (781)
Q Consensus 307 ~~~~rIaI~-TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~ 361 (781)
-++..|.|+ .+.+.|- +-.-...++.+..|-+.|..+|++|+|+++.+.|.+.+
T Consensus 45 v~g~~v~iv~~s~~~~~-~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~ 99 (308)
T TIGR01251 45 VRGKDVFIIQQSTSAPV-NDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKF 99 (308)
T ss_pred CCCCeEEEEeCCCCCCc-cHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhcccc
Confidence 346789898 6665542 22222223345566667877999999999988877654
No 187
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=56.35 E-value=20 Score=33.96 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc
Q 003992 596 DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN 639 (781)
Q Consensus 596 ~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~ 639 (781)
++.++++..+||.|--|..+..--.+-.|+.+|+|+|....|-.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 45567888899999888777766667788899999998766643
No 188
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=56.07 E-value=1e+02 Score=31.14 Aligned_cols=103 Identities=19% Similarity=0.111 Sum_probs=54.4
Q ss_pred cceeeccCCcccccccccCchHhHHhhcccCCCcEEEECCCchhHHHHHHHHHHhhc-C-CEEEEEECCcHHHHHHhhcc
Q 003992 389 DFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF-N-HVVGVVHTNYLEYIKREKNG 466 (781)
Q Consensus 389 ~~~i~~yP~~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~l~~~~~g~~~akk~-~-pvV~ivHt~y~~y~~~~~~~ 466 (781)
+..+.-.|+++.+..-.--++.-..+......+|+|++++--.+.-+. | +.... + |.+..+|.|-..|.......
T Consensus 28 ~~~lltLP~r~w~WRmRg~AL~~a~~~~~~~~~dll~aTsmldLa~l~-g--L~p~l~~~p~ilYFHENQl~YP~~~~~~ 104 (168)
T PF12038_consen 28 EWTLLTLPARKWHWRMRGAALYFAQQIPLSHSYDLLFATSMLDLATLR-G--LRPDLANVPKILYFHENQLAYPVSPGQE 104 (168)
T ss_pred CEEEEEcCCCccccccCCCHHHHhhccccccCCCEEEeeccccHHHHH-h--hccCCCCCCEEEEEecCcccCCCCCCcc
Confidence 344444566543322111122212344456678999998765554433 1 22233 3 99999999866554332111
Q ss_pred hhHHHHHHHHHHHHHHhcCCEEEEcChhhhh
Q 003992 467 ALQAFFVKHINNWVTRAYCDKVLRLSAATQD 497 (781)
Q Consensus 467 ~~~~~l~k~l~r~l~r~~aD~VI~vS~~~k~ 497 (781)
.-+...+.++..-.-||.|+..|..-++
T Consensus 105 ---rd~~~~~~ni~saLaAD~v~FNS~~nr~ 132 (168)
T PF12038_consen 105 ---RDFQYGMNNIYSALAADRVVFNSAFNRD 132 (168)
T ss_pred ---ccccHHHHHHHHHHhceeeeecchhhHH
Confidence 1122223333333358999999995544
No 189
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=55.82 E-value=55 Score=40.42 Aligned_cols=144 Identities=11% Similarity=0.052 Sum_probs=94.2
Q ss_pred CCcEEEEEeeccCccCHHHHHHHHHHhhccCCC----cEEEEEeC-----CCCHHHHHHHH----Hh----cC----CcE
Q 003992 531 FSKGAYFLGKMVWAKGYRELIDLLAKHKNDLDG----FKLDVFGN-----GEDAYEVQSAA----KR----LD----LNL 589 (781)
Q Consensus 531 ~~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~----i~LvIVG~-----Gp~~~~L~~~a----~~----lg----L~V 589 (781)
++++++-+-+++.-||+..=+.++.++..++|. +.++.+.. |..-++++..+ ++ .+ ..|
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV 354 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPV 354 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceE
Confidence 577888999999999999888889888887765 44444443 22112233222 11 11 113
Q ss_pred -EEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhC----CcEEEeCCCCcceee-cCCccccCCCHHHHHHHH
Q 003992 590 -NFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMG----KFVICADHPSNEFFR-SFPNCLTYKTSEDFVARV 661 (781)
Q Consensus 590 -~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G----~PVVaSd~gg~g~L~-~~~ngv~~~D~eeLa~aI 661 (781)
.++...+..+ +++..+|+++..|.-+|..++.+|+.+|. .+.|.+..-|..... .+.-.+.+-|.++++.+|
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~aivvnpw~~~~~~~~i 434 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDAAIVVNPWDGDEFAILI 434 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccccCEEECCcchHHHHHHH
Confidence 3344555455 88999999999999999999999999985 345555433332211 122224447789999999
Q ss_pred HHHHhCCCCCCCh
Q 003992 662 KEALANDPQPLTP 674 (781)
Q Consensus 662 ~~LL~d~~~r~~m 674 (781)
..+++..+...++
T Consensus 435 ~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 435 SKALTMSDEEREL 447 (732)
T ss_pred HHHhhcCHHHHhh
Confidence 9999876654444
No 190
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=53.85 E-value=47 Score=33.15 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=59.9
Q ss_pred EEEEEeeccCccCHHHHHHHH------HHhhccCCCcEEEE-EeCCC-CH-HHHHHHHHhcCCcEEEcCCCCCHHHHHhc
Q 003992 534 GAYFLGKMVWAKGYRELIDLL------AKHKNDLDGFKLDV-FGNGE-DA-YEVQSAAKRLDLNLNFQKGRDHADDSLHG 604 (781)
Q Consensus 534 ~ILfVGRL~~~KGid~LLeA~------~~L~~~~p~i~LvI-VG~Gp-~~-~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ 604 (781)
+++.||.-. ++.||.++ ..|.+. .=.+|+| +|.|. .- +......+..++.|....+.+...++++.
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~-G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKR-GFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHc-CccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 455666543 77777655 233332 2245544 67762 11 22222335567778888888888889999
Q ss_pred ccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 605 YKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 605 ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
||+.| .-+..-+++|-+..|+|.|.-
T Consensus 81 AdlVI----sHAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 81 ADLVI----SHAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred ccEEE----ecCCcchHHHHHHcCCCEEEE
Confidence 99999 334456899999999998874
No 191
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=53.68 E-value=31 Score=35.90 Aligned_cols=144 Identities=15% Similarity=0.041 Sum_probs=74.5
Q ss_pred CccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCc-E--EEcCC-CCCHH-HHHhcccEEEEccCCCC
Q 003992 543 WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN-L--NFQKG-RDHAD-DSLHGYKVFINPSISDV 616 (781)
Q Consensus 543 ~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~-V--~FlG~-v~~~e-~ly~~ADVfVlPS~~Eg 616 (781)
-.|=+..|..|+.-+... .+-++++||.-+.. ..+++.+...|.. | +|+|+ ..+.. ..+..=|+.|+....+.
T Consensus 48 L~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~ 126 (204)
T PRK04020 48 VRKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGD 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCccc
Confidence 345555566665554443 34578888877655 4556666666654 2 45654 23332 23334455554443222
Q ss_pred ChHHHHHHHHhCCcEEEe-CCCCcceeecCCccccC-CCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHH
Q 003992 617 LCTATAEALAMGKFVICA-DHPSNEFFRSFPNCLTY-KTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFI 690 (781)
Q Consensus 617 fGlviLEAMA~G~PVVaS-d~gg~g~L~~~~ngv~~-~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll 690 (781)
..++.||.-+|+|||+- |...+.-+++.+ ++. +|.-.-...+..++.+.-.+.+......-.|+-..+.|+
T Consensus 127 -~~AI~EA~kl~IP~IaivDTn~dp~~Vdyp--IP~Ndds~~SI~li~~ll~~aIl~~kg~~~~~~~~~v~~~~f~ 199 (204)
T PRK04020 127 -AQAVKEAIEVGIPVVALCDTDNLTSNVDLV--IPTNNKGRKALALVYWLLAREILRERGEIKPDEDLPVPVEDFE 199 (204)
T ss_pred -HHHHHHHHHhCCCEEEEEeCCCCcccCcee--ECCCCchHHHHHHHHHHHHHHHHHhhCccCCCCCCCcCHHHHh
Confidence 68899999999999997 444333222211 444 333333444444444332222222233445555555543
No 192
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=52.95 E-value=50 Score=33.17 Aligned_cols=67 Identities=10% Similarity=-0.081 Sum_probs=48.1
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCC-CHHHHHhcccEEEEc
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFINP 611 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~-~~e~ly~~ADVfVlP 611 (781)
.=.+...|+||..+....-+.-+++-|+|+ ...|...+++.|..|.-.|... -.+++.++||-|+.-
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~D-F~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDAD-FLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIIL 155 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHh-HHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeC
Confidence 345788999999885544566666667664 4556666777899888888544 444899999988854
No 193
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=52.09 E-value=2.1e+02 Score=29.03 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHH-----HhcCCcEEEcCCCCCHH---HHHhcccEEEEccCCC
Q 003992 544 AKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAA-----KRLDLNLNFQKGRDHAD---DSLHGYKVFINPSISD 615 (781)
Q Consensus 544 ~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a-----~~lgL~V~FlG~v~~~e---~ly~~ADVfVlPS~~E 615 (781)
..-.+.+.+.+..+.+....+.++.....+......... ......+.......+.+ .+++.||++|-...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl-- 266 (286)
T PF04230_consen 189 EEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRL-- 266 (286)
T ss_pred hhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCC--
Confidence 344555666666666643444444444333222111111 11122244444333333 89999999997776
Q ss_pred CChHHHHHHHHhCCcEEEeCC
Q 003992 616 VLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 616 gfGlviLEAMA~G~PVVaSd~ 636 (781)
-..+=|+++|+|+|+-+.
T Consensus 267 ---H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 267 ---HGAILALSLGVPVIAISY 284 (286)
T ss_pred ---HHHHHHHHcCCCEEEEec
Confidence 467889999999998654
No 194
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=52.02 E-value=56 Score=31.75 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCcEEEcCCCCCHH--------------------------------HHHhcccEEEEc--cCCCCC--h
Q 003992 575 AYEVQSAAKRLDLNLNFQKGRDHAD--------------------------------DSLHGYKVFINP--SISDVL--C 618 (781)
Q Consensus 575 ~~~L~~~a~~lgL~V~FlG~v~~~e--------------------------------~ly~~ADVfVlP--S~~Egf--G 618 (781)
++++++.++..+|.|.|.|++.+-+ .++..||+.|.- -.|--| .
T Consensus 11 Re~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQWNaA 90 (141)
T PF11071_consen 11 REEIKEGAKAAGLPVEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQWNAA 90 (141)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHHHHHH
Confidence 4667777777777777776654211 467778977643 122222 1
Q ss_pred HHHHHHHHhCCcEEEeCCCCcc-eee--cCCccccCCCHHHHHHHHHHHHh
Q 003992 619 TATAEALAMGKFVICADHPSNE-FFR--SFPNCLTYKTSEDFVARVKEALA 666 (781)
Q Consensus 619 lviLEAMA~G~PVVaSd~gg~g-~L~--~~~ngv~~~D~eeLa~aI~~LL~ 666 (781)
+-.--|.|+|+|.|.-.-+..- -+. +........++++..+.|.++++
T Consensus 91 fDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~e 141 (141)
T PF11071_consen 91 FDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVLE 141 (141)
T ss_pred hhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHhC
Confidence 2234568999999998655431 111 11222455889998888887763
No 195
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=51.99 E-value=1.2e+02 Score=33.61 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=49.4
Q ss_pred CCccccccccccc-----ccccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEE
Q 003992 273 INDELDLRIASVL-----QSTGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTL 347 (781)
Q Consensus 273 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~Vtl 347 (781)
.+++|+-+||.-| ..+=.+|++|-. .-+++-+-++..|.|+.+...|- +-.-...+..+-.+-+.+..+||+
T Consensus 12 s~~~La~~ia~~l~~~l~~~~~~rF~DGE~--~V~i~EsVrg~dVfI~qs~~~pv-nd~lmELLi~idA~k~asA~~It~ 88 (314)
T COG0462 12 SNPELAEKIAKRLGIPLGKVEVKRFPDGEI--YVRIEESVRGKDVFIIQSTSPPV-NDNLMELLIMIDALKRASAKRITA 88 (314)
T ss_pred CCHHHHHHHHHHhCCCcccceeEEcCCCcE--EEEecccccCCeEEEEeCCCCCc-CHHHHHHHHHHHHHHhcCCceEEE
Confidence 3445555555422 223335665543 12334456678999998888653 111112233444566667789999
Q ss_pred EeccCCCCCCccc
Q 003992 348 LVPWLCKSDQELV 360 (781)
Q Consensus 348 VvP~l~~~dq~~v 360 (781)
|+|++....|...
T Consensus 89 ViPY~gYARQDk~ 101 (314)
T COG0462 89 VIPYFGYARQDKA 101 (314)
T ss_pred EeecchhhccCcc
Confidence 9999988777644
No 196
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=51.31 E-value=18 Score=44.68 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=84.9
Q ss_pred CCCCcEEEEEeeccCccCHHH-HHHHH---HHhhccCCC-----cEEEEEeCCC---CH-HHHHHH----HHhc------
Q 003992 529 QAFSKGAYFLGKMVWAKGYRE-LIDLL---AKHKNDLDG-----FKLDVFGNGE---DA-YEVQSA----AKRL------ 585 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~-LLeA~---~~L~~~~p~-----i~LvIVG~Gp---~~-~~L~~~----a~~l------ 585 (781)
.++...++++=|+...|...+ ++..+ .++++. |+ ..+++.|.-. .. ..+.++ ++..
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIREN-PQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhh
Confidence 344455567789999999888 65554 444433 32 6788888532 21 222222 2111
Q ss_pred --CCcEEEcCCCC--CHHHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCCCccee---ecCCccccC-CCHH
Q 003992 586 --DLNLNFQKGRD--HADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFF---RSFPNCLTY-KTSE 655 (781)
Q Consensus 586 --gL~V~FlG~v~--~~e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~gg~g~L---~~~~ngv~~-~D~e 655 (781)
.+.|.|+..-+ .++.++.+|||....|+ .|.-|+.-+=+|.-|.+.++|--|.+-++ +++.|++.+ .+.+
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ 684 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVE 684 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHH
Confidence 13488887544 34589999999999987 69999999999999999999988876333 236777777 4444
Q ss_pred HHH
Q 003992 656 DFV 658 (781)
Q Consensus 656 eLa 658 (781)
++.
T Consensus 685 ev~ 687 (798)
T PRK14985 685 QVK 687 (798)
T ss_pred HHH
Confidence 433
No 197
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=48.19 E-value=2.3e+02 Score=31.21 Aligned_cols=125 Identities=12% Similarity=0.146 Sum_probs=75.2
Q ss_pred HHHHhcCCEEEEcCh---hhhhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhhCcCCCCcEEEEEeeccCccCHHHH
Q 003992 479 WVTRAYCDKVLRLSA---ATQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYREL 550 (781)
Q Consensus 479 ~l~r~~aD~VI~vS~---~~k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~L 550 (781)
.+.+ |+|.|++=.. ...++.+ ..+.++|+-+-...+|.. -...++.+|. -....|.|+|-+.+..=..-+
T Consensus 91 vls~-y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g~~va~vGD~~~~~v~~Sl 168 (301)
T TIGR00670 91 TLSG-YSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGR-LDGLKIALVGDLKYGRTVHSL 168 (301)
T ss_pred HHHH-hCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCCEEEEEccCCCCcHHHHH
Confidence 3455 6898877554 2233332 224567877654445532 2233455563 234678899966545546667
Q ss_pred HHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccC
Q 003992 551 IDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 551 LeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
+.++..+ ++++.+++.-.. .+++.+.+++.|..|.+ .++.++.+..|||+...+.
T Consensus 169 ~~~~a~~-----g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 169 AEALTRF-----GVEVYLISPEELRMPKEILEELKAKGIKVRE---TESLEEVIDEADVLYVTRI 225 (301)
T ss_pred HHHHHHc-----CCEEEEECCccccCCHHHHHHHHHcCCEEEE---ECCHHHHhCCCCEEEECCc
Confidence 7777664 578888884322 24555566656655554 3566789999999888765
No 198
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.64 E-value=26 Score=39.16 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=58.5
Q ss_pred hhcccCCCcccccccCCcccccccccccccc-----cccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHH
Q 003992 258 RSIAGGECSVLENDNINDELDLRIASVLQST-----GHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLF 332 (781)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~ 332 (781)
..+|....-.+-..+.+.+|.=+||..|.-. =.+|+||-..= +..-+-++..|.|+-+.+.|- +-.-...++
T Consensus 14 ~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v--~i~~~vrg~~V~ivqs~~~p~-nd~l~eLll 90 (330)
T PRK02812 14 PLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYV--QIQESIRGCDVYLIQPTCAPV-NDHLMELLI 90 (330)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEE--EeCCCCCCCEEEEECCCCCCc-cHHHHHHHH
Confidence 4455533334444555667777777766422 23566664421 222333567899998866552 221122233
Q ss_pred HHHHHHHcCCCEEEEEeccCCCCCCccc
Q 003992 333 RAAYLAKTEQQNVTLLVPWLCKSDQELV 360 (781)
Q Consensus 333 rA~~Lak~G~~~VtlVvP~l~~~dq~~v 360 (781)
.+..+.+.|..+|++|+|+++.+.|.+.
T Consensus 91 ~~~alr~~ga~ri~~ViPYl~YaRQDr~ 118 (330)
T PRK02812 91 MVDACRRASARQITAVIPYYGYARADRK 118 (330)
T ss_pred HHHHHHHhCCceEEEEEecccccccccc
Confidence 4556666777799999999988777654
No 199
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=47.57 E-value=23 Score=33.44 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc
Q 003992 304 DLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV 360 (781)
Q Consensus 304 ~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v 360 (781)
+.+-++..|.|+.+.+.|- +..-...+..+..+-+.|..+|++|+|+++.+.|.+.
T Consensus 42 ~~~v~g~dv~iiqs~~~~~-nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~ 97 (116)
T PF13793_consen 42 PESVRGKDVFIIQSTSPPV-NDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRR 97 (116)
T ss_dssp SS--TTSEEEEE---SSSH-HHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSS
T ss_pred cccccCCceEEEEecCCch-hHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccC
Confidence 3345578999998887542 2222222333444555666799999999988777654
No 200
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=47.36 E-value=85 Score=28.56 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHh--cccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 561 LDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 561 ~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~--~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
.++++++-+ -.+..+..+..+++.++. . .++.++++. ..|+.+..+....-.-.+.+++..|++|++-
T Consensus 23 ~~~~~v~~v-~d~~~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 23 SPDFEVVAV-CDPDPERAEAFAEKYGIP-V----YTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp TTTEEEEEE-ECSSHHHHHHHHHHTTSE-E----ESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCcEEEEE-EeCCHHHHHHHHHHhccc-c----hhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEE
Confidence 356666533 235666677777878865 2 234556777 6898888888877788899999999999985
No 201
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=46.24 E-value=51 Score=40.97 Aligned_cols=130 Identities=13% Similarity=0.038 Sum_probs=85.9
Q ss_pred CCCCcEEEEEeeccCccCHHH-HHHHH---HHhhccCC-----CcEEEEEeCCC---CH-HHHHHHHHhc----------
Q 003992 529 QAFSKGAYFLGKMVWAKGYRE-LIDLL---AKHKNDLD-----GFKLDVFGNGE---DA-YEVQSAAKRL---------- 585 (781)
Q Consensus 529 ~~~~~~ILfVGRL~~~KGid~-LLeA~---~~L~~~~p-----~i~LvIVG~Gp---~~-~~L~~~a~~l---------- 585 (781)
.++...++++=|+...|...+ ++..+ .++++. | ...+++.|.-. .. ..+.+++...
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKED-PPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhC-CCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 345555678889999999888 55554 445433 3 35777777532 21 2222222111
Q ss_pred --CCcEEEcCCCC--CHHHHHhcccEEEEccC--CCCChHHHHHHHHhCCcEEEeCCCCccee---ecCCccccC-CCHH
Q 003992 586 --DLNLNFQKGRD--HADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVICADHPSNEFF---RSFPNCLTY-KTSE 655 (781)
Q Consensus 586 --gL~V~FlG~v~--~~e~ly~~ADVfVlPS~--~EgfGlviLEAMA~G~PVVaSd~gg~g~L---~~~~ngv~~-~D~e 655 (781)
.+.|.|+..-+ .++.++.+|||....|+ .|.-|+.-+=+|.-|.+.++|--|.+-++ ++..|++.+ .+.+
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ 682 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVE 682 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHH
Confidence 12488877544 34589999999999987 69999999999999999999988876332 346677777 4444
Q ss_pred HHHH
Q 003992 656 DFVA 659 (781)
Q Consensus 656 eLa~ 659 (781)
+..+
T Consensus 683 ev~~ 686 (794)
T TIGR02093 683 EVEA 686 (794)
T ss_pred HHHH
Confidence 4443
No 202
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=44.23 E-value=88 Score=30.47 Aligned_cols=92 Identities=17% Similarity=0.092 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhcCCcEEEcCCCCCHH--------------------------------HHHhcccEEEEc--cCCCCC--
Q 003992 574 DAYEVQSAAKRLDLNLNFQKGRDHAD--------------------------------DSLHGYKVFINP--SISDVL-- 617 (781)
Q Consensus 574 ~~~~L~~~a~~lgL~V~FlG~v~~~e--------------------------------~ly~~ADVfVlP--S~~Egf-- 617 (781)
-++++.+-++..+|.|.|.+++.+-+ .++..||+.|.- -.|.-+
T Consensus 13 WRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYKQWNa 92 (144)
T TIGR03646 13 WREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYKQWNA 92 (144)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHHHHHH
Confidence 35777777887788888877664211 456778877743 122222
Q ss_pred hHHHHHHHHhCCcEEEeCCCCcc-eee--cCCccccCCCHHHHHHHHHHHH
Q 003992 618 CTATAEALAMGKFVICADHPSNE-FFR--SFPNCLTYKTSEDFVARVKEAL 665 (781)
Q Consensus 618 GlviLEAMA~G~PVVaSd~gg~g-~L~--~~~ngv~~~D~eeLa~aI~~LL 665 (781)
.+-.--|.|+|+|.|.-.-+..- -+. +........++++..+.|.+++
T Consensus 93 AfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 93 AFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 12234568999999997555431 111 1111244488888888887765
No 203
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=43.59 E-value=76 Score=34.32 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=44.9
Q ss_pred CCCcEEEECCCchhHHHHHHHHHHhhcC-CEEEEEECCcHHHHH--Hhh------cchhHHHHHHH---HHHHHHHhcCC
Q 003992 419 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIK--REK------NGALQAFFVKH---INNWVTRAYCD 486 (781)
Q Consensus 419 ~kPDVIhl~~P~~l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~--~~~------~~~~~~~l~k~---l~r~l~r~~aD 486 (781)
-+.||+|+.+....+.++ ...+.+.+ |.+.+-|..|..--. ... ...++....++ +-+..+. +||
T Consensus 171 P~advyHsvstGyAgl~g--~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~-~Ad 247 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLG--ALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYR-AAD 247 (268)
T ss_pred CCCCEEecCCccHHHHHH--HHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH-hhC
Confidence 367999998876666555 55566667 999999988742111 001 11222222222 2222333 699
Q ss_pred EEEEcChhhhh
Q 003992 487 KVLRLSAATQD 497 (781)
Q Consensus 487 ~VI~vS~~~k~ 497 (781)
.|+++++..+.
T Consensus 248 ~I~~l~~~n~~ 258 (268)
T PF11997_consen 248 RITPLYEYNRE 258 (268)
T ss_pred eecccchhhHH
Confidence 99999986554
No 204
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=43.37 E-value=2.1e+02 Score=31.57 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcccc
Q 003992 307 DKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVY 361 (781)
Q Consensus 307 ~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~ 361 (781)
-++..|.|+.+.+.|- +-.-...++.+..|-+.|..+|++|+|+++.+.|.+.+
T Consensus 45 v~g~~V~ii~s~~~~~-nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~ 98 (309)
T PRK01259 45 VRGKDVFIIQSTCAPT-NDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKA 98 (309)
T ss_pred CCCCEEEEECCCCCCC-cHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhh
Confidence 3567899998866552 22112223345566667777999999999988887654
No 205
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=42.99 E-value=82 Score=31.67 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=44.1
Q ss_pred HHHHHHHhhccCCCcEEEEEeCCCC-HHHHHHHHHhcCCcEEEcCCCC-CHHHHHhcccEEEEccCCC
Q 003992 550 LIDLLAKHKNDLDGFKLDVFGNGED-AYEVQSAAKRLDLNLNFQKGRD-HADDSLHGYKVFINPSISD 615 (781)
Q Consensus 550 LLeA~~~L~~~~p~i~LvIVG~Gp~-~~~L~~~a~~lgL~V~FlG~v~-~~e~ly~~ADVfVlPS~~E 615 (781)
.+++++++.....+-+++|+|.|.. ...+.+...+.|..|....... +..+.+..||++|...-..
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCC
Confidence 4445555544456789999999975 4435555656666665555443 3447899999999887653
No 206
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=41.97 E-value=3e+02 Score=29.43 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=28.8
Q ss_pred cEEEEccCCCCChHHHHHHHHhCCcEEEe-CCCCcceeec
Q 003992 606 KVFINPSISDVLCTATAEALAMGKFVICA-DHPSNEFFRS 644 (781)
Q Consensus 606 DVfVlPS~~EgfGlviLEAMA~G~PVVaS-d~gg~g~L~~ 644 (781)
|++|.-...|.. .+++||.-+++|+|+- |...+..++.
T Consensus 175 D~vvvln~~e~~-sAilEA~K~~IPTIgIVDtN~~P~liT 213 (251)
T KOG0832|consen 175 DLVVVLNPEENH-SAILEAAKMAIPTIGIVDTNCNPELIT 213 (251)
T ss_pred ceeEecCccccc-HHHHHHHHhCCCeEEEecCCCCcccee
Confidence 888877777765 6899999999999987 4445555533
No 207
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=41.80 E-value=6e+02 Score=29.23 Aligned_cols=232 Identities=17% Similarity=0.141 Sum_probs=109.2
Q ss_pred CCcEEEECCCchh--------HHHHHH-HHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHHHHHHHHHHHhcCCEEE
Q 003992 420 DADIAILEEPEHL--------NWYHHG-KRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCDKVL 489 (781)
Q Consensus 420 kPDVIhl~~P~~l--------~~~~~g-~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~k~l~r~l~r~~aD~VI 489 (781)
+.|++++.....+ .|+.-+ ..+++..+ |++..-|+.- +.++...+.+-+.+.+ .|..++
T Consensus 89 ~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svG----------P~~~~~s~~~~~~~~~-~~s~i~ 157 (385)
T COG2327 89 KADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVG----------PLKHPLSRQLLNYVLG-GCSAIS 157 (385)
T ss_pred hCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCC----------CccCHHHHHHHHHHhc-CCcEEE
Confidence 5788776543222 222212 33444455 7776666432 2223333333333333 466666
Q ss_pred EcChhhhhcCCC--c-EEeeCCCCCCCCCCCcchhhHhhhCcCCCCcEEEEEeeccCc--------cCHHHHHHHHHHhh
Q 003992 490 RLSAATQDLPKS--V-ICNVHGVNPKFLQIGEKVATDREQGQQAFSKGAYFLGKMVWA--------KGYRELIDLLAKHK 558 (781)
Q Consensus 490 ~vS~~~k~l~~k--i-vvi~nGVD~~~f~p~~~~~~r~~~Gi~~~~~~ILfVGRL~~~--------KGid~LLeA~~~L~ 558 (781)
+=-+.-.++.+. + ..+.. |+.|.-+..........+..+.+.+.+.+-.+.+. |.+..+++-+....
T Consensus 158 vRD~~S~~llk~~gi~a~l~~--D~Af~L~~~~~~~~~~~~~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~~~~~~ 235 (385)
T COG2327 158 VRDPVSYELLKQLGINARLVT--DPAFLLPASSQNATASDVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDLVERQV 235 (385)
T ss_pred EecHHhHHHHHHcCCCeEeec--CcceecccccccccccccccccceEEEEecccCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 554444443331 1 11222 77665321111111111222233444444444432 22334444443333
Q ss_pred ccCCCcEEEEEeCCCCHHHHHHHHHhcC--CcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 559 NDLDGFKLDVFGNGEDAYEVQSAAKRLD--LNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 559 ~~~p~i~LvIVG~Gp~~~~L~~~a~~lg--L~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
...-.+.++-.+.-.+..-.+..+.... -++.+........ ..++++|++|-.-. -+++=||+.|+|+|+-
T Consensus 236 ~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-----HsaI~al~~g~p~i~i 310 (385)
T COG2327 236 KALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-----HSAIMALAFGVPAIAI 310 (385)
T ss_pred hcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-----HHHHHHHhcCCCeEEE
Confidence 3222344444454444555555555433 1255543322222 57899999984433 4678899999999998
Q ss_pred CCCC--cceee--cCCcc---ccCCCHHHHHHHHHHHHhCCC
Q 003992 635 DHPS--NEFFR--SFPNC---LTYKTSEDFVARVKEALANDP 669 (781)
Q Consensus 635 d~gg--~g~L~--~~~ng---v~~~D~eeLa~aI~~LL~d~~ 669 (781)
.... .++.. +-+.+ ....|.+.+.....+.+.+-+
T Consensus 311 ~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 311 AYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred eecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 6641 11110 00111 334677778877777665543
No 208
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=40.75 E-value=37 Score=36.44 Aligned_cols=97 Identities=16% Similarity=0.012 Sum_probs=53.8
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCc---EEEcCCC-CCHH-HHHhcccEEEEccCCC
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLN---LNFQKGR-DHAD-DSLHGYKVFINPSISD 615 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~---V~FlG~v-~~~e-~ly~~ADVfVlPS~~E 615 (781)
+-.|=+..|..|+.-+..--..-.+++||.-+.. ..+++.+...|-. =+|+|+. .+.. ..+..=|++|+..- -
T Consensus 50 dL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp-~ 128 (249)
T PTZ00254 50 NLAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDP-R 128 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCC-C
Confidence 3345455555555444322123456778876654 4455566655544 2455542 2222 33445565555442 2
Q ss_pred CChHHHHHHHHhCCcEEEe-CCCCc
Q 003992 616 VLCTATAEALAMGKFVICA-DHPSN 639 (781)
Q Consensus 616 gfGlviLEAMA~G~PVVaS-d~gg~ 639 (781)
.=-.++.||..+|+|||+- |..+.
T Consensus 129 ~d~qAI~EA~~lnIPvIal~DTds~ 153 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCDTDSP 153 (249)
T ss_pred cchHHHHHHHHhCCCEEEEecCCCC
Confidence 2247899999999999997 44443
No 209
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=39.62 E-value=1.1e+02 Score=35.14 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=56.7
Q ss_pred ccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHh--cccEEEEccCCCCCh
Q 003992 541 MVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLH--GYKVFINPSISDVLC 618 (781)
Q Consensus 541 L~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~--~ADVfVlPS~~EgfG 618 (781)
+.-.++++.+.+...++. .+.+++++.....++++.....+ +.++...+...++.. .+|++|....-..--
T Consensus 33 Laa~~n~~~l~~q~~~f~-----p~~v~i~~~~~~~~l~~~l~~~~--~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl 105 (385)
T PRK05447 33 LSAGKNVELLAEQAREFR-----PKYVVVADEEAAKELKEALAAAG--IEVLAGEEGLCELAALPEADVVVAAIVGAAGL 105 (385)
T ss_pred EEcCCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhccCC--ceEEEChhHHHHHhcCCCCCEEEEeCcCcccH
Confidence 344678888888777653 35677776555555655443212 323333344445555 468888877644333
Q ss_pred HHHHHHHHhCCcEEEeCCC
Q 003992 619 TATAEALAMGKFVICADHP 637 (781)
Q Consensus 619 lviLEAMA~G~PVVaSd~g 637 (781)
-.+++|+.+|++|++++-.
T Consensus 106 ~ptl~Ai~aGK~VaLANKE 124 (385)
T PRK05447 106 LPTLAAIRAGKRIALANKE 124 (385)
T ss_pred HHHHHHHHCCCcEEEeCHH
Confidence 6799999999999998765
No 210
>PLN02527 aspartate carbamoyltransferase
Probab=38.86 E-value=3.7e+02 Score=29.68 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=74.0
Q ss_pred HHHHHhcCCEEEEcCh---hhhhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhhCcCCCCcEEEEEeeccCccCHHH
Q 003992 478 NWVTRAYCDKVLRLSA---ATQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRE 549 (781)
Q Consensus 478 r~l~r~~aD~VI~vS~---~~k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~ 549 (781)
+.+.+ |+|.|+.=.. ...++.+ ..+.++|+-+-...+|.. -...++.+|- -....|.|+|-+...+=..-
T Consensus 91 ~vls~-y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g~kva~vGD~~~~rv~~S 168 (306)
T PLN02527 91 RTVEG-YSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGR-LDGIKVGLVGDLANGRTVRS 168 (306)
T ss_pred HHHHH-hCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCC-cCCCEEEEECCCCCChhHHH
Confidence 33455 6898877654 2233332 224566876643444532 2233445552 23467889996643344566
Q ss_pred HHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccC
Q 003992 550 LIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 550 LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
++.++..+ .++.+.+++.-.. ..++.+.+++.|..+.+ .++.++.+..|||+.....
T Consensus 169 l~~~~~~~----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 169 LAYLLAKY----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEE---SSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred HHHHHHhc----CCCEEEEECCCccCCCHHHHHHHHHcCCEEEE---EcCHHHHhCCCCEEEECCc
Confidence 67666543 4678888884222 24555666665655543 3566689999999888654
No 211
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=38.86 E-value=3e+02 Score=32.00 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=74.0
Q ss_pred HHHHhcCCEEEEcCh---hhhhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhhCc---CCCCcEEEEEeeccCccCH
Q 003992 479 WVTRAYCDKVLRLSA---ATQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQ---QAFSKGAYFLGKMVWAKGY 547 (781)
Q Consensus 479 ~l~r~~aD~VI~vS~---~~k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~Gi---~~~~~~ILfVGRL~~~KGi 547 (781)
.+.+ |+|.|++=+. .+.++.+ ..+.++|+-|....+|.. -....+.+|. .-....|.|||-+...+=.
T Consensus 178 vLs~-y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~ 256 (429)
T PRK11891 178 VMSG-YVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTV 256 (429)
T ss_pred HHHH-hCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHH
Confidence 3445 6898877654 2333333 235567888755555542 2233445531 1234678899976434445
Q ss_pred HHHHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccC
Q 003992 548 RELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 548 d~LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
.-++.++.. +.++++++++.-.. .+++.+.+++.|..|.+ .++.++.+..|||+...+.
T Consensus 257 ~Sl~~~la~----~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 257 HSLVKLLAL----YRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ---TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred HHHHHHHHH----hcCCEEEEECCCccccCHHHHHHHHhcCCeEEE---EcCHHHHhCCCCEEEEcCc
Confidence 556665543 24678889884322 24555555555655554 3566689999999888664
No 212
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.46 E-value=52 Score=36.27 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=42.1
Q ss_pred ccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc
Q 003992 290 HHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV 360 (781)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v 360 (781)
.+|+||-.. -...-+-++..|.|+.+...|- +-.-...++.+..+-+.|..+|++|+|+++.+.|.+.
T Consensus 19 ~~F~DGE~~--vri~~~v~g~~v~ii~s~~~p~-nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~ 86 (304)
T PRK03092 19 YDFANGEIY--VRFEESVRGCDAFVLQSHTAPI-NKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKK 86 (304)
T ss_pred EECCCCCEE--EEECCCCCCCEEEEEeCCCCCC-cHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccc
Confidence 366666432 1222234578899998876652 2222223344556666777799999999987777654
No 213
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=38.42 E-value=30 Score=38.06 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=41.8
Q ss_pred cccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCcccc
Q 003992 291 HYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVY 361 (781)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v~ 361 (781)
+|+||-..= +..-+-++..|.|+.+.+.| +-.-...++.+..|-+.|..+|++|+|+++.+.|.+.+
T Consensus 33 ~F~dGE~~v--~i~~~v~g~~V~ivqs~~~~--n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~ 99 (301)
T PRK07199 33 RFPDGESYV--RLDSPVAGRTVVLVCSLDRP--DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAF 99 (301)
T ss_pred ECCCCCEEE--EECCCCCCCEEEEECCCCCC--cHHHHHHHHHHHHHHHcCCCeEEEEeeccccccccccc
Confidence 566665521 12223456789999887766 33222333345566667777999999999877776543
No 214
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=38.34 E-value=2.8e+02 Score=31.87 Aligned_cols=127 Identities=18% Similarity=0.130 Sum_probs=67.0
Q ss_pred EEEEeecc-----CccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCC-cEEEcCCCCCHHHHHhc--cc
Q 003992 535 AYFLGKMV-----WAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDL-NLNFQKGRDHADDSLHG--YK 606 (781)
Q Consensus 535 ILfVGRL~-----~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL-~V~FlG~v~~~e~ly~~--AD 606 (781)
.+..|.+. +.+-...++.++.++ +++.++..=.++....+.+...+.+- +|.+.++.+..+-++.. ..
T Consensus 281 yvSfGS~~~~~~lp~~~~~~l~~~l~~~----~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~ 356 (496)
T KOG1192|consen 281 YISFGSMVNSADLPEEQKKELAKALESL----QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVG 356 (496)
T ss_pred EEECCcccccccCCHHHHHHHHHHHHhC----CCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCc
Confidence 34556654 456666777777765 35555554443332221111111111 28888999988733222 34
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeCCC----Ccceeec--CCcccc----CCCHHHHHHHHHHHHhCCCC
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICADHP----SNEFFRS--FPNCLT----YKTSEDFVARVKEALANDPQ 670 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd~g----g~g~L~~--~~ngv~----~~D~eeLa~aI~~LL~d~~~ 670 (781)
+|| + +=|+ .+++||+.+|+|+|+...= -|..... +..++. ..+.+ +.+++..+++++..
T Consensus 357 ~Fv--T-HgG~-nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~-~~~~~~~il~~~~y 425 (496)
T KOG1192|consen 357 GFV--T-HGGW-NSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE-LLEAIKEILENEEY 425 (496)
T ss_pred EEE--E-CCcc-cHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH-HHHHHHHHHcChHH
Confidence 555 2 3344 3559999999999975432 2221111 111111 13344 78888888877643
No 215
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=38.05 E-value=55 Score=36.09 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=41.8
Q ss_pred cccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc
Q 003992 291 HYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV 360 (781)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v 360 (781)
+|+||-..= +..-.-++..|.|+.+.+.|- +-.-...++.+..+-+.|..+|++|+|+++.+.|.+.
T Consensus 22 ~FpdGE~~v--~i~~~v~g~~V~iv~s~~~p~-nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~ 88 (302)
T PLN02369 22 RFADGEIYV--QLQESVRGCDVFLVQPTCPPA-NENLMELLIMIDACRRASAKRITAVIPYFGYARADRK 88 (302)
T ss_pred ECCCCCEEE--EECCCCCCCeEEEEecCCCCc-chHHHHHHHHHHHHHHcCCCeEEEEeecccccccccc
Confidence 556665422 122233567899999987662 2222223334556666777799999999988777654
No 216
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=37.25 E-value=29 Score=37.05 Aligned_cols=37 Identities=30% Similarity=0.256 Sum_probs=31.3
Q ss_pred HHHhcccEEEEccCCCCChHHHHHHHHhCC-cEEEeCC
Q 003992 600 DSLHGYKVFINPSISDVLCTATAEALAMGK-FVICADH 636 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfGlviLEAMA~G~-PVVaSd~ 636 (781)
+.|+.+...+.|.-...+..-+.|||++|+ |||.+|.
T Consensus 232 ~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~ 269 (302)
T PF03016_consen 232 ELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDD 269 (302)
T ss_pred HhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCc
Confidence 688899988888766668889999999998 8888764
No 217
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=37.07 E-value=3.1e+02 Score=28.30 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=55.6
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHH--HhcCCc-EEEcCC----------------CCCHHHHH
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAA--KRLDLN-LNFQKG----------------RDHADDSL 602 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a--~~lgL~-V~FlG~----------------v~~~e~ly 602 (781)
.....+..|++-+..+.......++.|+|.|..-..+.... ...+.. +-|... .++..+++
T Consensus 63 ~~gy~v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li 142 (213)
T PRK05472 63 GVGYNVEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVV 142 (213)
T ss_pred CCCeeHHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHH
Confidence 33467888999888887666678999999998766554432 233444 333211 11122555
Q ss_pred hc--ccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 603 HG--YKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 603 ~~--ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
+. .|+++++.......-..-.++.+|+..|..
T Consensus 143 ~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~ 176 (213)
T PRK05472 143 KENDIEIGILTVPAEAAQEVADRLVEAGIKGILN 176 (213)
T ss_pred HHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence 44 777766655444444455677799655554
No 218
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.39 E-value=5.5e+02 Score=27.72 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=69.4
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeC-----------CCCH---HHHHHHHHhcCCcEEEcCC-CCCHHHHHhccc
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGN-----------GEDA---YEVQSAAKRLDLNLNFQKG-RDHADDSLHGYK 606 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~-----------Gp~~---~~L~~~a~~lgL~V~FlG~-v~~~e~ly~~AD 606 (781)
..-..-+.+++.+..+++. ++.++.-|. |+.. ..|.+..++.|+.+.-.-+ ..+.+.+...+|
T Consensus 23 C~vEs~e~~~~~a~~~~~~--g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vd 100 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKL--GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLD 100 (250)
T ss_pred CccCCHHHHHHHHHHHHHc--CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCC
Confidence 3344566677777776554 466666663 2222 5666677778876322222 223334556799
Q ss_pred EEEEccCCCCChHHHHHHH-HhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 607 VFINPSISDVLCTATAEAL-AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAM-A~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
++=.||. +..-..+++++ ..|+||+.++ |.. .+++++..+++++.+.
T Consensus 101 ilqIgs~-~~~n~~LL~~va~tgkPVilk~----G~~---------~t~~e~~~A~e~i~~~ 148 (250)
T PRK13397 101 VIQVGAR-NMQNFEFLKTLSHIDKPILFKR----GLM---------ATIEEYLGALSYLQDT 148 (250)
T ss_pred EEEECcc-cccCHHHHHHHHccCCeEEEeC----CCC---------CCHHHHHHHHHHHHHc
Confidence 9999995 44457778777 4699999873 322 3678888888888753
No 219
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.88 E-value=6e+02 Score=27.54 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=70.4
Q ss_pred EEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEe-----------CCCCH---HHHHHHHHhcCCcEEEcCC-CCCH
Q 003992 534 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFG-----------NGEDA---YEVQSAAKRLDLNLNFQKG-RDHA 598 (781)
Q Consensus 534 ~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG-----------~Gp~~---~~L~~~a~~lgL~V~FlG~-v~~~ 598 (781)
.++.+| ..--...+.+++.++++++. +++++..| .|... ..+++..++.|+.+.-.-+ ..+.
T Consensus 28 ~~~iaG-PCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~ 104 (266)
T PRK13398 28 KIIIAG-PCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDV 104 (266)
T ss_pred EEEEEe-CCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhH
Confidence 344444 44455788889999888875 45677777 22222 5666777788877322222 2233
Q ss_pred HHHHhcccEEEEccCCCCChHHHHHHH-HhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHh
Q 003992 599 DDSLHGYKVFINPSISDVLCTATAEAL-AMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 666 (781)
Q Consensus 599 e~ly~~ADVfVlPS~~EgfGlviLEAM-A~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~ 666 (781)
+.+...+|++-.+|.. ..-..+++++ ..|+||+.++.-. .+.+++..++..+.+
T Consensus 105 ~~l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G~~-------------~s~~e~~~A~e~i~~ 159 (266)
T PRK13398 105 EEVADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRGMS-------------ATLEEWLYAAEYIMS 159 (266)
T ss_pred HHHHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHh
Confidence 3333458999999963 3335455554 5799999874322 245677777777764
No 220
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.14 E-value=53 Score=36.55 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=50.6
Q ss_pred cCCcccccccccccc-----cccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEE
Q 003992 272 NINDELDLRIASVLQ-----STGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVT 346 (781)
Q Consensus 272 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~Vt 346 (781)
+...+|.=+||..|. .+=.+|+||-+.-.-. -+-++..|.|+-+.+.|- +..-...++.+..|-+.|..+|+
T Consensus 16 ~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~--~~v~g~dV~ii~s~~~~~-nd~l~eLll~~~alr~~~a~~i~ 92 (323)
T PRK02458 16 NSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIE--ESVRGDDIYIIQSTSFPV-NDHLWELLIMIDACKRASANTVN 92 (323)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEec--CCcCCCeEEEEecCCCCC-chHHHHHHHHHHHHHHcCCceEE
Confidence 334556666665543 2234667776532222 233567888888776552 22222233345566667777999
Q ss_pred EEeccCCCCCCccc
Q 003992 347 LLVPWLCKSDQELV 360 (781)
Q Consensus 347 lVvP~l~~~dq~~v 360 (781)
+|+||++...|.+.
T Consensus 93 lViPYl~YaRQDr~ 106 (323)
T PRK02458 93 VVLPYFGYARQDRI 106 (323)
T ss_pred EEEeccccchhhcc
Confidence 99999987777654
No 221
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=34.44 E-value=1.2e+02 Score=33.80 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhccCCCcEE--EEEeCCCCH-----HHHHHHHHhcCCcEEEcC--CCCCHH----HHHhcccEEEEccC
Q 003992 547 YRELIDLLAKHKNDLDGFKL--DVFGNGEDA-----YEVQSAAKRLDLNLNFQK--GRDHAD----DSLHGYKVFINPSI 613 (781)
Q Consensus 547 id~LLeA~~~L~~~~p~i~L--vIVG~Gp~~-----~~L~~~a~~lgL~V~FlG--~v~~~e----~ly~~ADVfVlPS~ 613 (781)
++.-+++++.+ .||++= +++..|+.. ++++..++..|++|.=.+ ...+.+ .+....|++..|..
T Consensus 145 v~q~i~lik~~---~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~d 221 (322)
T COG2984 145 VAQQIELIKAL---LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTD 221 (322)
T ss_pred HHHHHHHHHHh---CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecc
Confidence 33334444443 466543 567777632 788888999999943322 334443 44467898888864
Q ss_pred C---CCChHHHHHHHHhCCcEEEeCCCCc--ceeecCCccccCCC-HHHHHHHHHHHHh
Q 003992 614 S---DVLCTATAEALAMGKFVICADHPSN--EFFRSFPNCLTYKT-SEDFVARVKEALA 666 (781)
Q Consensus 614 ~---EgfGlviLEAMA~G~PVVaSd~gg~--g~L~~~~ngv~~~D-~eeLa~aI~~LL~ 666 (781)
. -++...+.+|...++||+++|.+.- |-+.. -++.+.+ -.+.++-+.++|.
T Consensus 222 n~i~s~~~~l~~~a~~~kiPli~sd~~~V~~Ga~aA--~gvdy~~~G~qtg~~v~~ILk 278 (322)
T COG2984 222 NLIVSAIESLLQVANKAKIPLIASDTSSVKEGALAA--LGVDYKDLGKQTGEMVVKILK 278 (322)
T ss_pred hHHHHHHHHHHHHHHHhCCCeecCCHHHHhcCccee--eccCHHHHHHHHHHHHHHHHc
Confidence 2 3455678999999999999987632 22111 1133322 3345555677776
No 222
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=32.29 E-value=1.4e+02 Score=31.98 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 596 DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 596 ~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
++.++++..+|+.+-.|..+...-.+..|+..|+|||+...|
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 445566778999997777777767788999999999987544
No 223
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=31.26 E-value=8.4e+02 Score=27.83 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=155.9
Q ss_pred CCCcCcccccHHHHHHHHHHcCC-CEEEEEeccCCCCCCcccccc-ccccCCchhhHHHHHHHHHhhCCcccceeeccCC
Q 003992 320 LPWMTGTAVNPLFRAAYLAKTEQ-QNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVGFKADFKISFYPG 397 (781)
Q Consensus 320 lP~~~G~av~~l~rA~~Lak~G~-~~VtlVvP~l~~~dq~~v~p~-i~f~~p~~qe~yir~~l~~rig~~~~~~i~~yP~ 397 (781)
-.|-+|.-.|.++.+.-|.+... ++|++|.- +++... |. ..+. ..+
T Consensus 14 siW~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~----g~~~~~-~~~~~~~---------------~~~------------ 61 (364)
T PF10933_consen 14 SIWENGINQNCIFLAMLLQQSPRVESVVLVNG----GDGNPI-PAALMLD---------------LLD------------ 61 (364)
T ss_pred chhhhchhhHHHHHHHHHhhCCCcceEEEEEC----CCCCcC-Ccccccc---------------cCC------------
Confidence 45889998888888888887763 58888742 222111 11 0000 001
Q ss_pred cccccccccCchHhHHhhcccCCCcEEEECCCch-hHHHHHHHHHHhhcC-CEEEEEECCcHHHHHHhhcchhHHHHH-H
Q 003992 398 KFSKERRSIIPAGDTSQFIPSKDADIAILEEPEH-LNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKREKNGALQAFFV-K 474 (781)
Q Consensus 398 ~~~~~~~sil~v~~L~k~I~~~kPDVIhl~~P~~-l~~~~~g~~~akk~~-pvV~ivHt~y~~y~~~~~~~~~~~~l~-k 474 (781)
+++..+...+. +.||++=-+... ..|. ...+..+ ++|+....+ +|...-. ..++ +
T Consensus 62 ---------~~~~~~~~~~~--~lDVlIEmg~ql~~~~~----~~~~~~G~KvV~y~~Gn--dYv~~~E-----~~lF~k 119 (364)
T PF10933_consen 62 ---------VPLVDFDDAID--ELDVLIEMGAQLDPEWL----DYMRARGGKVVSYRCGN--DYVMDIE-----SMLFNK 119 (364)
T ss_pred ---------CceecHHHhcc--cCCEEEEccCccCHHHH----HHHHHcCCeEEEEeCCc--hHHHHhh-----HHhcCC
Confidence 11222334433 689988433221 1222 2344555 777776654 2321100 0110 0
Q ss_pred HHHHHHHHhcCCEEEEcChhhhh---c-----CCCcEEeeCCCCCCCCCCCcchh--hHhhhCcCC---CCcEEEEEeec
Q 003992 475 HINNWVTRAYCDKVLRLSAATQD---L-----PKSVICNVHGVNPKFLQIGEKVA--TDREQGQQA---FSKGAYFLGKM 541 (781)
Q Consensus 475 ~l~r~l~r~~aD~VI~vS~~~k~---l-----~~kivvi~nGVD~~~f~p~~~~~--~r~~~Gi~~---~~~~ILfVGRL 541 (781)
.....+....+|.|.++-+..+. + ...+.++|+--+|.|++...... ...++|-.+ ...+-+|=-++
T Consensus 120 ~~~~~f~~~~yD~VW~lPq~~~~~~~yl~~l~r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi 199 (364)
T PF10933_consen 120 PSGHLFNGAPYDEVWTLPQFENTCAPYLETLHRCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNI 199 (364)
T ss_pred CCCccCCCCCCceeEeccchhhhchHHHHHHhcCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCc
Confidence 00111222248999988775443 1 12456666655777764321110 011222222 12233444455
Q ss_pred cCccCHHHHHHHHHHhhccCCC-cEEEEEeCCC---CHHHHHHHHHhcCCc----EEEcCCCCCHHHHHhcccEEEEccC
Q 003992 542 VWAKGYRELIDLLAKHKNDLDG-FKLDVFGNGE---DAYEVQSAAKRLDLN----LNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~-i~LvIVG~Gp---~~~~L~~~a~~lgL~----V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
.--|+--.=+-+.++.-+..|+ ++.+.|-+-. +..++...+..+.+- ..|.|..+-..-+-+..|++|.--.
T Consensus 200 ~vvK~~~~PmLi~E~aYR~~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~~~p~fla~~tD~VvSHqW 279 (364)
T PF10933_consen 200 SVVKTCFIPMLICEEAYRADPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRFDFPDFLAQHTDAVVSHQW 279 (364)
T ss_pred eEEeecCccHHHHHHHHHhChhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeecChHHHHHhCCCEEEeccc
Confidence 5556544333334444444455 4445554332 225566666655542 8888988777744455788886655
Q ss_pred CCCChHHHHHHHHhCCcEEEeC--CCCcceeecCCccccCCCHHHHHHHHHHHHhCCCC
Q 003992 614 SDVLCTATAEALAMGKFVICAD--HPSNEFFRSFPNCLTYKTSEDFVARVKEALANDPQ 670 (781)
Q Consensus 614 ~EgfGlviLEAMA~G~PVVaSd--~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~ 670 (781)
.-+.-..-.|||.-|=|.|-.. .+.+|+. .+..|..+=+++|.+++...+.
T Consensus 280 eN~lNYlY~daLyggYPLVHNS~~l~d~GYY------Y~~fD~~~G~r~L~~A~~~HD~ 332 (364)
T PF10933_consen 280 ENPLNYLYYDALYGGYPLVHNSPLLKDVGYY------YPDFDAFEGARQLLRAIREHDA 332 (364)
T ss_pred cchhhHHHHHHHhcCCCcccCcchhcccCcC------CCCccHHHHHHHHHHHHHHccc
Confidence 5567778999999999999753 2455665 5558888889999998876654
No 224
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=30.99 E-value=2.6e+02 Score=21.81 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=41.1
Q ss_pred cEEEEEeC--CCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 564 FKLDVFGN--GEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 564 i~LvIVG~--Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
..+.+.|. +..+..+++++...|-.+.- ..+ ..++.+|.++....- ....|...|+|||..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~--~~~------~~~thvI~~~~~~~~--~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTS--SVS------KKTTHVIVGSDAGPK--KLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEec--ccc------CCceEEEECCCCCch--HHHHHHHcCCeEecH
Confidence 46778886 57889999999988855322 111 456666766543222 278889999999875
No 225
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=30.02 E-value=93 Score=34.79 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCccccccccccc------ccccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHH-HHHHHHHcCCCEE
Q 003992 273 INDELDLRIASVL------QSTGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLF-RAAYLAKTEQQNV 345 (781)
Q Consensus 273 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~-rA~~Lak~G~~~V 345 (781)
.+..|.-+||.-+ +.+=.+++||.-.-.-+.+-+-++..|.|+.+...| .....++ .+..|-+.|..+|
T Consensus 24 ~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p----d~lmELLl~~dAlr~~ga~~i 99 (326)
T PLN02297 24 ETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP----AVIFEQLSVIYALPKLFVASF 99 (326)
T ss_pred CCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC----hHHHHHHHHHHHHHHcCCCEE
Confidence 3355666666643 223357788821000111123457889999887766 2233333 3556667777899
Q ss_pred EEEeccCCCCCCccc
Q 003992 346 TLLVPWLCKSDQELV 360 (781)
Q Consensus 346 tlVvP~l~~~dq~~v 360 (781)
++|+|++....|.+.
T Consensus 100 ~~ViPY~~YaRQDr~ 114 (326)
T PLN02297 100 TLVLPFFPTGTSERV 114 (326)
T ss_pred EEEeeCChhhcCCCC
Confidence 999999987776654
No 226
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=29.34 E-value=35 Score=34.16 Aligned_cols=85 Identities=22% Similarity=0.455 Sum_probs=51.4
Q ss_pred ccchhhhhhhhHHhhcchhhhHHHHHHhhhhhhhhhhhhhHHHHHHhhccCC-CCCchhhhHHHhhcchhhhhhhccCch
Q 003992 11 SKAFSFISRSWREVRDSADADIQLMKNRANSFKNLATSFDRELENFLNSANR-SSAPAEIDFVKKLQPKISEFRRVYSAP 89 (781)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (781)
++=++|.|.+||- +++-+..+..+|.-++.++. |+ +|+-+|-..|.. ++-..+-.+-.+|++-+..++..|..=
T Consensus 22 s~L~~fvs~~WR~-~~~le~~i~~Ir~a~~~v~~---sl-~~fl~FArga~~NA~~~~D~~L~~kL~~qLq~l~ds~qiL 96 (159)
T PF08824_consen 22 SNLMSFVSSNWRS-PESLERHINEIRAAVDRVRA---SL-REFLDFARGALANASNLSDRNLQAKLRRQLQPLEDSYQIL 96 (159)
T ss_dssp HHHHHHHCSSTT--CCCHHTTCCHHHHHHHHHHH---HH-HHHHHHHHHHHCCHTTTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCC-hHHHhhhHHHHHHHHHHHHH---HH-HHHHHHHhHHHHHHccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3457899999998 78888888888887765543 33 555555433333 234456666667777666666666544
Q ss_pred hhhHHHhh--hcC
Q 003992 90 EISKRVLE--KWG 100 (781)
Q Consensus 90 ~~~~~~~~--~~~ 100 (781)
-=.+..|| +|.
T Consensus 97 ~~~~q~Ld~~~Ws 109 (159)
T PF08824_consen 97 LQTSQALDSCNWS 109 (159)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCC
Confidence 33334444 553
No 227
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.25 E-value=81 Score=36.65 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=51.6
Q ss_pred cCCcccccccccccc-----cccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEE
Q 003992 272 NINDELDLRIASVLQ-----STGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVT 346 (781)
Q Consensus 272 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~Vt 346 (781)
+.+.+|.-+||..|. .+=.+|+||-..=. +.-+-++..|.|+.+.+.|- +-.-...++.+..+-+.|..+|+
T Consensus 126 s~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~Vr--i~e~VrG~dV~IVqS~~~pv-Nd~LmELLllidAlr~agAkrIt 202 (439)
T PTZ00145 126 SSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQ--FLESIRGKDVYIIQPTCPPV-NENLIELLLMISTCRRASAKKIT 202 (439)
T ss_pred CCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEE--ECCCcCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHhccCeEE
Confidence 334556666666553 22246677665222 22234567899998877662 22222223345566667778999
Q ss_pred EEeccCCCCCCccc
Q 003992 347 LLVPWLCKSDQELV 360 (781)
Q Consensus 347 lVvP~l~~~dq~~v 360 (781)
+|+|++..+.|.+.
T Consensus 203 lViPYl~YaRQDR~ 216 (439)
T PTZ00145 203 AVIPYYGYARQDRK 216 (439)
T ss_pred EEeecccchheecc
Confidence 99999988777654
No 228
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=29.03 E-value=1.5e+02 Score=30.27 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCC-----------CChHHHHHHHHhCCcEEEe
Q 003992 566 LDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISD-----------VLCTATAEALAMGKFVICA 634 (781)
Q Consensus 566 LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~E-----------gfGlviLEAMA~G~PVVaS 634 (781)
++.+|+......++..++..+.++.+.....+ ...+|.+++|.-.. ++--.+.++...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 45556555557777777777777666665544 45678888886431 2233477778889999886
No 229
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=29.02 E-value=7e+02 Score=28.52 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=78.8
Q ss_pred hhCcCCCCcEEEEEeeccCcc---C---HHHHHHHHHHhhccC-CCcEEEEEeCCCCH-HHHHHHHHhcCCcEEEcCCCC
Q 003992 525 EQGQQAFSKGAYFLGKMVWAK---G---YRELIDLLAKHKNDL-DGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRD 596 (781)
Q Consensus 525 ~~Gi~~~~~~ILfVGRL~~~K---G---id~LLeA~~~L~~~~-p~i~LvIVG~Gp~~-~~L~~~a~~lgL~V~FlG~v~ 596 (781)
.+.++.++++|+|.-...... | ....++..+...... .++.+++-= -|.. +.+....+ ..-.+.....-.
T Consensus 201 ~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~k~-Hp~is~~~~~~~~-~~~~~~~vs~~~ 278 (388)
T COG1887 201 ALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIVKP-HPLISDKIDKRYA-LDDFVLDVSDNA 278 (388)
T ss_pred hcCCcccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEEec-Chhhhhhhhhhhh-ccceeEecccch
Confidence 445566788998887766554 2 333343333332233 345444432 2222 22221111 111233333333
Q ss_pred CHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc------ceeec---CCccccCCCHHHHHHHHHHHHhC
Q 003992 597 HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN------EFFRS---FPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 597 ~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~------g~L~~---~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
+..++|..+|++|. -+.-++.|+|..-+|||-.-.... |++.+ ..-|-...+.+++.++|...+.+
T Consensus 279 di~dll~~sDiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~ 353 (388)
T COG1887 279 DINDLLLVSDILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDED 353 (388)
T ss_pred hHHHHHhhhCEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhcc
Confidence 44589999999993 357789999999999998733221 33322 11122337888999999998876
Q ss_pred CCCC
Q 003992 668 DPQP 671 (781)
Q Consensus 668 ~~~r 671 (781)
.+..
T Consensus 354 ~~~~ 357 (388)
T COG1887 354 GNYD 357 (388)
T ss_pred cchh
Confidence 5543
No 230
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=28.79 E-value=4.9e+02 Score=28.04 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=67.4
Q ss_pred EEeeccCccCHHHHHHHHHHhhccCCCcEE-----------EEEeCCCC-HHHHHHHHHhcCCcEEEcCC-CCCHHHHHh
Q 003992 537 FLGKMVWAKGYRELIDLLAKHKNDLDGFKL-----------DVFGNGED-AYEVQSAAKRLDLNLNFQKG-RDHADDSLH 603 (781)
Q Consensus 537 fVGRL~~~KGid~LLeA~~~L~~~~p~i~L-----------vIVG~Gp~-~~~L~~~a~~lgL~V~FlG~-v~~~e~ly~ 603 (781)
+++...--...+.+++.++++++....+.. -.-|-|.. ...|++..++.|+.+.-..+ ..+.+.+..
T Consensus 28 ~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~ 107 (260)
T TIGR01361 28 VIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAE 107 (260)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHh
Confidence 344455555677778877777643221111 11222222 25677777888876332222 223334445
Q ss_pred cccEEEEccCCCCChHHHHHHHH-hCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHh
Q 003992 604 GYKVFINPSISDVLCTATAEALA-MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 666 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA-~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~ 666 (781)
.+|++-.||. +..-..+++++| .|+||+.++.-. .+.+++..++..+.+
T Consensus 108 ~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~ 157 (260)
T TIGR01361 108 YADILQIGAR-NMQNFELLKEVGKQGKPVLLKRGMG-------------NTIEEWLYAAEYILS 157 (260)
T ss_pred hCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHH
Confidence 6899999995 455566776665 699999874322 246777777777765
No 231
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.76 E-value=65 Score=36.06 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=50.9
Q ss_pred cCCccccccccccccc-----ccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEE
Q 003992 272 NINDELDLRIASVLQS-----TGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVT 346 (781)
Q Consensus 272 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~Vt 346 (781)
+.+.+|.-+||..|.- +=.+|+||-..= +..-+-++..|.|+-+...|- +-.-...++.+..|.+.|..+|+
T Consensus 16 ~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v--~i~~~vrg~dV~ivqs~~~p~-nd~l~eLll~~~alr~~~a~~i~ 92 (332)
T PRK00553 16 SKAKKLVDSICRKLSMKPGEIVIQKFADGETYI--RFDESVRNKDVVIFQSTCSPV-NDSLMELLIAIDALKRGSAKSIT 92 (332)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCEEE--EECCCCCCCEEEEEcCCCCCC-chHHHHHHHHHHHHHHcCCCeEE
Confidence 4446677777766642 224566664421 222233567899998866552 22112223345566667777999
Q ss_pred EEeccCCCCCCccc
Q 003992 347 LLVPWLCKSDQELV 360 (781)
Q Consensus 347 lVvP~l~~~dq~~v 360 (781)
+|+|+++.+.|.+.
T Consensus 93 ~ViPYl~YaRQDr~ 106 (332)
T PRK00553 93 AILPYYGYARQDRK 106 (332)
T ss_pred EEeeccccchhhcc
Confidence 99999887666543
No 232
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.67 E-value=2.9e+02 Score=28.31 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=27.9
Q ss_pred hccc-EEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 603 HGYK-VFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 603 ~~AD-VfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+.+| +++.|...+...-.+-++...|+|||..+.+
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 3467 5556677777788888999999999998877
No 233
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.48 E-value=73 Score=35.44 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCccccccccccccc-----ccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHH-HHHHHHHcCCCEEE
Q 003992 273 INDELDLRIASVLQS-----TGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLF-RAAYLAKTEQQNVT 346 (781)
Q Consensus 273 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~-rA~~Lak~G~~~Vt 346 (781)
.+.+|.=+||..|.- +=.+|+||-.. -+..-+-++..|.|+-+.+.|- +- ....++ .+..|-+.|..+|+
T Consensus 14 ~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~--v~i~~~v~g~~V~iiqs~~~p~-nd-~lmeLl~~~~alr~~~a~~i~ 89 (319)
T PRK04923 14 ANKPLAQSICKELGVRMGKALVTRFSDGEVQ--VEIEESVRRQEVFVIQPTCAPS-AE-NLMELLVLIDALKRASAASVT 89 (319)
T ss_pred CCHHHHHHHHHHhCCceeeeEEEECCCCCEE--EEECCCcCCCeEEEEecCCCCC-ch-HHHHHHHHHHHHHHcCCcEEE
Confidence 335555566655532 12356666542 1222234568899998776652 22 222333 34456666777999
Q ss_pred EEeccCCCCCCccc
Q 003992 347 LLVPWLCKSDQELV 360 (781)
Q Consensus 347 lVvP~l~~~dq~~v 360 (781)
+|+||++.+.|.+.
T Consensus 90 ~ViPYl~YaRQDr~ 103 (319)
T PRK04923 90 AVIPYFGYSRQDRR 103 (319)
T ss_pred EEeecccccccccc
Confidence 99999987777654
No 234
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.42 E-value=93 Score=31.42 Aligned_cols=84 Identities=21% Similarity=0.416 Sum_probs=61.7
Q ss_pred cCCcchhHHHHHH----HHHHHHHhhcchhhhHhcCCCchhHHHHHHhhhhhhccCCCCCCCCCCCChHHHHHHHH----
Q 003992 152 EVGEWEPIRTLKM----RLREFERKRELSVEEIFGGFKSSDFVEKVKSSWKAICKEPEESKDVPPLDPTELLAHLV---- 223 (781)
Q Consensus 152 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 223 (781)
..+||..+|.-+. ++.++-+ . + -++|+..++..|..++ +..++||-+=.++|+.|-
T Consensus 46 ~GDDWDk~RaA~~laggg~e~v~~---~----~-----l~~f~~Q~~~tmeel~----~~~~~~~~~k~~~LasLaDsf~ 109 (165)
T PF08822_consen 46 KGDDWDKARAAHTLAGGGIEDVAR---Q----M-----LEDFVVQYQATMEELK----ENEDMPPQEKVELLASLADSFS 109 (165)
T ss_pred cCCcHHHHHHHHHhccCcHHHHHH---H----H-----HHHHHHHHHHHHHHHh----cccCCCHHHHHHHHHHHHHHHH
Confidence 4899999997654 2333222 1 1 1568888888888877 667899999999998773
Q ss_pred ------hhhcccccccccchhhhHHHHHHHhhhh
Q 003992 224 ------RQSGPFLDHLGVKRDLCDKIVESLCSKR 251 (781)
Q Consensus 224 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (781)
|+--|=.+.|+|-.++.+.+.+-+..+.
T Consensus 110 K~vaaskr~lPets~LavA~~vl~~l~~fv~e~~ 143 (165)
T PF08822_consen 110 KMVAASKRVLPETSELAVAMEVLELLAAFVQERY 143 (165)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667888999998888888777666544
No 235
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=27.50 E-value=7.8 Score=33.93 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=31.1
Q ss_pred cccccCCcccccccccccccccccccCCccccCCCCCCCCCCCEEEEEeC
Q 003992 268 LENDNINDELDLRIASVLQSTGHHYEGGFWTDFGKDDLSDKKRNVAIVTT 317 (781)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIaI~Tt 317 (781)
+.+.+..+|+.| .+.|-..|++|.-+.-.=|..-++.-++.+||||.+
T Consensus 16 ir~k~TkpE~~l--r~~L~~~G~RyR~~~~~lpG~PDiv~~~~k~aIFVd 63 (75)
T PF03852_consen 16 IRSKDTKPELAL--RRALHALGLRYRLNRKDLPGKPDIVFPKYKIAIFVD 63 (75)
T ss_dssp --SSS-HHHHHH--HHHHHHTT--EEES-TTSTT--SEEEGGGTEEEEEE
T ss_pred ccCCCChHHHHH--HHHHHhcCCEEEEccCcCCCCCCEEECCCCEEEEEe
Confidence 445566677665 578999999998887666677777778899999975
No 236
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=27.22 E-value=2.6e+02 Score=31.18 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=55.7
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCC--------------CCCHHHHHhcccEEE--EccCCCCChHHHHHHHH
Q 003992 563 GFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG--------------RDHADDSLHGYKVFI--NPSISDVLCTATAEALA 626 (781)
Q Consensus 563 ~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~--------------v~~~e~ly~~ADVfV--lPS~~EgfGlviLEAMA 626 (781)
+-.+-|+|-|.--..+.+.++..|.+|..... .+..+++++.||+++ .|...|+.|+.=.|.++
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 34566677666666666666666666444332 123458999999765 56777887776555544
Q ss_pred hC-CcEEEeCCCCcceeecCCccccCCCHHHHHHHHHH
Q 003992 627 MG-KFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKE 663 (781)
Q Consensus 627 ~G-~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~ 663 (781)
.= ..+|--|++-.+.+ |.++|.++|..
T Consensus 222 ~MK~gailIN~aRG~vV----------de~aL~~AL~~ 249 (324)
T COG0111 222 KMKPGAILINAARGGVV----------DEDALLAALDS 249 (324)
T ss_pred hCCCCeEEEECCCccee----------cHHHHHHHHHc
Confidence 33 23455555554454 56777777765
No 237
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=27.18 E-value=2.5e+02 Score=31.33 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHHHHhcccEEE--EccCCCCChHH---HHHHHHhCCcEEEeCCC
Q 003992 598 ADDSLHGYKVFI--NPSISDVLCTA---TAEALAMGKFVICADHP 637 (781)
Q Consensus 598 ~e~ly~~ADVfV--lPS~~EgfGlv---iLEAMA~G~PVVaSd~g 637 (781)
.++++..||+++ +|...|+..+. .++.|--|.-+|-+.-|
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG 238 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG 238 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence 567999999765 56666776654 56666555555554333
No 238
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.57 E-value=4.3e+02 Score=25.80 Aligned_cols=71 Identities=21% Similarity=0.141 Sum_probs=48.6
Q ss_pred cCCCcEEEEEeCCCCH-HHHHHHHHhcCCcEEEcC-CCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEE
Q 003992 560 DLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQK-GRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVI 632 (781)
Q Consensus 560 ~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~V~FlG-~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVV 632 (781)
...+-+++|+|.+... ..+..+..+.|..|.... ...+.++..+.||+++...-.- ++.--|-+.-|.-||
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vi 97 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEE
Confidence 3456789999987765 566666666777755544 3345667899999999776544 334566667776666
No 239
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=25.61 E-value=4e+02 Score=30.42 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=52.5
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCC----------CCCHHHHHhcccEEE--EccCCC----CC---hHHHH
Q 003992 562 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG----------RDHADDSLHGYKVFI--NPSISD----VL---CTATA 622 (781)
Q Consensus 562 p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~----------v~~~e~ly~~ADVfV--lPS~~E----gf---GlviL 622 (781)
.+-++-|+|-|.--..+.+.++.+|.+|..... ....+++++.||+++ .|...+ +. +-..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 456888899888878888888888887544321 112348899999888 565443 44 44678
Q ss_pred HHHHhCCcEEEeCCC
Q 003992 623 EALAMGKFVICADHP 637 (781)
Q Consensus 623 EAMA~G~PVVaSd~g 637 (781)
.+|.-|.-+|-+--|
T Consensus 195 ~~mk~gailIN~aRG 209 (378)
T PRK15438 195 RSLKPGAILINACRG 209 (378)
T ss_pred hcCCCCcEEEECCCc
Confidence 888888777776555
No 240
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=25.44 E-value=6.6e+02 Score=28.04 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=68.7
Q ss_pred CccCHHHHHHHHHHhhcc------CCCcEEEEEeCCC----CHHHHHHHHHhcCCcEEEc-CC-CCCHH-HHHhcccEEE
Q 003992 543 WAKGYRELIDLLAKHKND------LDGFKLDVFGNGE----DAYEVQSAAKRLDLNLNFQ-KG-RDHAD-DSLHGYKVFI 609 (781)
Q Consensus 543 ~~KGid~LLeA~~~L~~~------~p~i~LvIVG~Gp----~~~~L~~~a~~lgL~V~Fl-G~-v~~~e-~ly~~ADVfV 609 (781)
...|++..++++.+.... ...-.+.|+|.-+ +..+++++.++.|++|..+ .. .+-.+ .-+..|.+-+
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 456788877777644321 1234577888644 5589999999999994333 22 33333 4556677666
Q ss_pred EccCCCCChHHHHHHHH--hCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHh
Q 003992 610 NPSISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALA 666 (781)
Q Consensus 610 lPS~~EgfGlviLEAMA--~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~ 666 (781)
..+.. +|..+.|.|. +|+|.+... + .|. ...+.+.+.|.+++.
T Consensus 206 v~~~~--~g~~~a~~l~~~~g~p~~~~~-p-~G~----------~~t~~~l~~i~~~~g 250 (399)
T cd00316 206 VLCRE--SGLYLARYLEEKYGIPYILIN-P-IGL----------EATDAFLRKLAELFG 250 (399)
T ss_pred EecHh--HHHHHHHHHHHHhCCCeEEeC-C-cCH----------HHHHHHHHHHHHHhC
Confidence 65542 4677777774 899999875 2 221 335566666666665
No 241
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=25.23 E-value=7.4e+02 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.055 Sum_probs=22.5
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
.-|++|+....+. ..++.||..+|+|+|+-
T Consensus 127 ~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 127 LPDLVIVLDPRKE-HQAIREASKLGIPVIAI 156 (193)
T ss_pred CCCEEEEeCCccc-hHHHHHHHHcCCCEEEE
Confidence 4566665554333 78899999999999997
No 242
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=25.19 E-value=2e+02 Score=27.91 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=53.8
Q ss_pred cCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHH--hcccEEEEccCCCCCh-
Q 003992 542 VWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSL--HGYKVFINPSISDVLC- 618 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly--~~ADVfVlPS~~EgfG- 618 (781)
.-.+|++.|.+...+++ | +.+++.+....+.+++.....+..+.++...+...++. ..+|+.++...- .-|
T Consensus 31 sa~~n~~~L~~q~~~f~---p--~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~vv~Ai~G-~aGL 104 (129)
T PF02670_consen 31 SAGSNIEKLAEQAREFK---P--KYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDIVVNAIVG-FAGL 104 (129)
T ss_dssp EESSTHHHHHHHHHHHT------SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SEEEE--SS-GGGH
T ss_pred EcCCCHHHHHHHHHHhC---C--CEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCEEEEeCcc-cchH
Confidence 34889999999988874 2 45777655555667766654455555554444433344 468888877542 223
Q ss_pred HHHHHHHHhCCcEEEeC
Q 003992 619 TATAEALAMGKFVICAD 635 (781)
Q Consensus 619 lviLEAMA~G~PVVaSd 635 (781)
.++++|+-.|+-|...|
T Consensus 105 ~pt~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 105 KPTLAAIKAGKDIALAN 121 (129)
T ss_dssp HHHHHHHHTTSEEEE--
T ss_pred HHHHHHHHCCCeEEEec
Confidence 36899999999877654
No 243
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=25.16 E-value=47 Score=32.33 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=35.5
Q ss_pred cccCCcccccccccccccccccccCCccccCCCCCCCCCCCEEEEEeC
Q 003992 270 NDNINDELDLRIASVLQSTGHHYEGGFWTDFGKDDLSDKKRNVAIVTT 317 (781)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIaI~Tt 317 (781)
+....|| +|.++.|.-+|.+|.-+.=+=|.+-++--++.+++||+-
T Consensus 19 s~dTkpE--~~lr~~L~~~G~rfR~~~~~lpGkPDiVl~~y~~viFvH 64 (150)
T COG3727 19 SRDTKPE--KRLRSLLTGQGLRFRVQDKDLPGKPDIVLPKYRCVIFVH 64 (150)
T ss_pred ccCccHH--HHHHHHHhhcceEEEecCCCCCCCCCEeecCceEEEEEe
Confidence 3344454 566688999999998877777777777888999999984
No 244
>PRK00124 hypothetical protein; Validated
Probab=24.88 E-value=1.2e+02 Score=30.15 Aligned_cols=72 Identities=13% Similarity=-0.013 Sum_probs=50.6
Q ss_pred EEEEeC-CCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 566 LDVFGN-GEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 566 LvIVG~-Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
+.|=|+ .|-.+++.+.+++.++.|.|.-..++.- ..-......+.++-.+.-=..++|...-|=-||+.|+|
T Consensus 3 I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di~ 77 (151)
T PRK00124 3 IYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQDYG 77 (151)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeCCHH
Confidence 445454 5677888899999999977765444332 11112345677777777788899999999989998887
No 245
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.85 E-value=2.1e+02 Score=27.24 Aligned_cols=67 Identities=16% Similarity=0.017 Sum_probs=44.9
Q ss_pred cCccCHHH--HHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCH-HHHHhcccEEE
Q 003992 542 VWAKGYRE--LIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHA-DDSLHGYKVFI 609 (781)
Q Consensus 542 ~~~KGid~--LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~-e~ly~~ADVfV 609 (781)
..+|+.|. .++++..+.....+.-+++-|+++....+ +.+++.|..|...|+.... .++...||=|+
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i-~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f~ 147 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLV-ERLRELGKRVIVVGFEAKTSRELRKAADRFI 147 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHH-HHHHHcCCEEEEEccCccChHHHHHhCCccc
Confidence 45677665 45777777665567777777877555544 4555678888888887443 37888888443
No 246
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.81 E-value=93 Score=33.90 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=46.6
Q ss_pred cccccccccccc-----cccccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEe
Q 003992 275 DELDLRIASVLQ-----STGHHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLV 349 (781)
Q Consensus 275 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVv 349 (781)
..|.-|||.-|. .+=++|+||-+.=. .+-+-++..|.|+.+..+| +-.-...++.+..|-+.|..+|++|+
T Consensus 9 ~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~--i~~~v~g~~v~i~~~~~~~--~d~l~ell~~~~alr~~ga~~i~~v~ 84 (285)
T PRK00934 9 QLLASEVARLLNTELALVETKRFPDGELYVR--ILGEIDGEDVVIISTTYPQ--DENLVELLLLIDALRDEGAKSITLVI 84 (285)
T ss_pred HHHHHHHHHHHCCceEeeEEEECCCCCEEEE--ECCCcCCCEEEEEeCCCCC--cHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 345555555443 22246666664222 2223346788888775432 22112223345566677878999999
Q ss_pred ccCCCCCCccc
Q 003992 350 PWLCKSDQELV 360 (781)
Q Consensus 350 P~l~~~dq~~v 360 (781)
|+++...|.+.
T Consensus 85 PY~~YaRqDr~ 95 (285)
T PRK00934 85 PYLGYARQDKR 95 (285)
T ss_pred cCCcccccccc
Confidence 99987766654
No 247
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=24.79 E-value=9.9e+02 Score=26.85 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=71.6
Q ss_pred HHHHhcCCEEEEcChhh---hhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhh---CcCCCCcEEEEEeeccCccCH
Q 003992 479 WVTRAYCDKVLRLSAAT---QDLPK-SVICNVHGVNPKFLQIGE----KVATDREQ---GQQAFSKGAYFLGKMVWAKGY 547 (781)
Q Consensus 479 ~l~r~~aD~VI~vS~~~---k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~---Gi~~~~~~ILfVGRL~~~KGi 547 (781)
.+.+ |+|.|+.=.... .++.+ ..+.++|+-+-...+|.. -....+.+ |-.-....|.|+|-+...+=.
T Consensus 96 vls~-y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~ 174 (338)
T PRK08192 96 VLST-YSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTV 174 (338)
T ss_pred HHHH-cCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchH
Confidence 3455 699888765522 33332 224567877643444532 12233333 211234688999976444445
Q ss_pred HHHHHHHHHhhccCCCcEEEEEeCCCC--HHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccC
Q 003992 548 RELIDLLAKHKNDLDGFKLDVFGNGED--AYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 548 d~LLeA~~~L~~~~p~i~LvIVG~Gp~--~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
.-++.++... .++.+.+++.-.. .+.+.+.++..|..+.. .++.++.+..|||+...+.
T Consensus 175 ~Sl~~~l~~~----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 175 HSLSRLLCMY----KNVSFTLVSPKELAMPDYVISDIENAGHKITI---TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred HHHHHHHHHh----cCCEEEEECCccccCCHHHHHHHHHcCCeEEE---EcCHHHHHccCCEEEEcCc
Confidence 6666655432 3678888884221 24544555555544443 3566678999999988754
No 248
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.71 E-value=2.5e+02 Score=29.77 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=61.6
Q ss_pred cEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEc
Q 003992 533 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINP 611 (781)
Q Consensus 533 ~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlP 611 (781)
.+|+|+|.-..+--- .|++..+++++..-.+.++.+|.-... +.+.+.+...+-. | ..+.++..|
T Consensus 109 riVvFvGSpi~e~ek-eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~----~---------~gshlv~Vp 174 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEK-ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK----G---------DGSHLVSVP 174 (259)
T ss_pred EEEEEecCcchhhHH-HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC----C---------CCceEEEeC
Confidence 467899975432211 778888888877556666777754443 4444444432210 1 123444444
Q ss_pred cCCCCChHHHHHHHHhCCcEEEeCCCCcceeec-----CCccccCCCHHHHHHHHHHHHhC
Q 003992 612 SISDVLCTATAEALAMGKFVICADHPSNEFFRS-----FPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 612 S~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~-----~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
.- .+++-.-.-.||+.-+.|+.+.=.+ +.-|+.+++.-+||.+|+--++.
T Consensus 175 pg------~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 175 PG------PLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred CC------ccHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 32 1344444567888776544322110 12245555555688888765543
No 249
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=24.70 E-value=1.7e+02 Score=26.39 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=44.7
Q ss_pred EEEEeCCCCH----HHHHHHHHhcCCcE--EEcCCCCCHHHHHhcccEEEEccCCCCChHHHHH--HHHhCCcEEEeCCC
Q 003992 566 LDVFGNGEDA----YEVQSAAKRLDLNL--NFQKGRDHADDSLHGYKVFINPSISDVLCTATAE--ALAMGKFVICADHP 637 (781)
Q Consensus 566 LvIVG~Gp~~----~~L~~~a~~lgL~V--~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLE--AMA~G~PVVaSd~g 637 (781)
|+++|.|-.. +.+++.+++.|+++ ...+. ...+..+..+|+++.....- +=..-++ +.-.++||..-+..
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcChH
Confidence 6778887654 66777788888873 33332 23335678899777664321 2233333 34578999987654
Q ss_pred Ccce
Q 003992 638 SNEF 641 (781)
Q Consensus 638 g~g~ 641 (781)
.-|.
T Consensus 81 ~Y~~ 84 (96)
T cd05564 81 DYGM 84 (96)
T ss_pred hccc
Confidence 4443
No 250
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=24.31 E-value=2.8e+02 Score=30.31 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCC-HH-HHHhcccEEEEcc
Q 003992 547 YRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDH-AD-DSLHGYKVFINPS 612 (781)
Q Consensus 547 id~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~-~e-~ly~~ADVfVlPS 612 (781)
.+...+|+..+.++.++.+++|+++ +.+.+++......-.+.+.+..+. .+ .+|+.||.+|.+.
T Consensus 190 ~~Yy~~Ai~~i~~~~~~~~f~ifSD--D~~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iisn 255 (298)
T PF01531_consen 190 KDYYKKAIEYIREKVKNPKFFIFSD--DIEWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISN 255 (298)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEECC
Confidence 5567788888888888999999995 445555555433333666665332 33 7899999888874
No 251
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=24.14 E-value=2.8e+02 Score=28.58 Aligned_cols=72 Identities=7% Similarity=0.047 Sum_probs=44.6
Q ss_pred cEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc
Q 003992 564 FKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICADHPSN 639 (781)
Q Consensus 564 i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~ 639 (781)
.+++++.. ...+++.+++.... +.+.... ..+..+..+|+++..+-.+..-..+.+....|++|-+.|.+..
T Consensus 34 a~V~VIs~-~~~~~l~~l~~~~~--i~~~~~~-~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~ 105 (202)
T PRK06718 34 AHIVVISP-ELTENLVKLVEEGK--IRWKQKE-FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAES 105 (202)
T ss_pred CeEEEEcC-CCCHHHHHHHhCCC--EEEEecC-CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCcc
Confidence 56666653 22355666665422 4443322 2234678899888877666666666666678999988887643
No 252
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=24.08 E-value=2.9e+02 Score=28.10 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=46.4
Q ss_pred cEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHH-HHHHHHhcCCcEEEcCCCCCHH---HHHhcc--c
Q 003992 533 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYE-VQSAAKRLDLNLNFQKGRDHAD---DSLHGY--K 606 (781)
Q Consensus 533 ~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~-L~~~a~~lgL~V~FlG~v~~~e---~ly~~A--D 606 (781)
.+.++...+.. +..+...+..+.+++|+.++++-...+...+ .++.... ...+.|+. .|... .++..- |
T Consensus 23 ~iWiHa~SvGE---~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~~~~~P-~D~~~~~~rfl~~~~P~ 97 (186)
T PF04413_consen 23 LIWIHAASVGE---VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVDVQYLP-LDFPWAVRRFLDHWRPD 97 (186)
T ss_dssp -EEEE-SSHHH---HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-SEEE----SSHHHHHHHHHHH--S
T ss_pred cEEEEECCHHH---HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeEEEEeC-ccCHHHHHHHHHHhCCC
Confidence 34456555554 4445555566677889999999887655533 3333222 33466654 44433 455543 6
Q ss_pred EEEEccCCCCChHHHHHHHHhCCcEEEeCC
Q 003992 607 VFINPSISDVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 607 VfVlPS~~EgfGlviLEAMA~G~PVVaSd~ 636 (781)
++|+- .+|-+|+-+.+|-..|+|++.-|.
T Consensus 98 ~~i~~-EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 98 LLIWV-ETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEEEE-S----HHHHHH-----S-EEEEEE
T ss_pred EEEEE-ccccCHHHHHHHhhcCCCEEEEee
Confidence 66654 479999999999999999998754
No 253
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.65 E-value=1e+02 Score=34.19 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=41.0
Q ss_pred ccccCCccccCCCCCCCCCCCEEEEEeCccCCCcCcccccHHHHHHHHHHcCCCEEEEEeccCCCCCCccc
Q 003992 290 HHYEGGFWTDFGKDDLSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV 360 (781)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~rIaI~TtaflP~~~G~av~~l~rA~~Lak~G~~~VtlVvP~l~~~dq~~v 360 (781)
.+|+||-..= +..-+-++..|.|+-+...| ++-.-...++.+..|-+.|..+|++|+||++.+.|.+.
T Consensus 35 ~~FpdGE~~v--~i~~~vrg~dV~iv~s~~~~-~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~ 102 (320)
T PRK02269 35 RQFSDGEIQV--NIEESIRGHHVFILQSTSSP-VNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRK 102 (320)
T ss_pred EECCCCCEEE--EECCCCCCCEEEEEecCCCC-ccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcc
Confidence 3566664321 12223356789999876655 22222223344556666777799999999887666543
No 254
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.35 E-value=5.1e+02 Score=26.38 Aligned_cols=59 Identities=14% Similarity=-0.079 Sum_probs=31.9
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
..|.++..+.. .+..+.+++..|+|||..+....+. ....+..++.+....+...++..
T Consensus 55 ~vdgiii~~~~--~~~~~~~~~~~~ipvv~~~~~~~~~---~~~~v~~d~~~~g~~~~~~l~~~ 113 (267)
T cd06284 55 QADGIILLDGS--LPPTALTALAKLPPIVQACEYIPGL---AVPSVSIDNVAAARLAVDHLISL 113 (267)
T ss_pred CCCEEEEecCC--CCHHHHHHHhcCCCEEEEecccCCC---CcceEEecccHHHHHHHHHHHHc
Confidence 46755553322 1223567777899999875432111 00113345666666666666654
No 255
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=23.35 E-value=8.2e+02 Score=28.04 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=67.5
Q ss_pred CccCHHHHHHHHHH-hhcc---CCCcEEEEEeCCC----CHHHHHHHHHhcCCcEEEc--------------------CC
Q 003992 543 WAKGYRELIDLLAK-HKND---LDGFKLDVFGNGE----DAYEVQSAAKRLDLNLNFQ--------------------KG 594 (781)
Q Consensus 543 ~~KGid~LLeA~~~-L~~~---~p~i~LvIVG~Gp----~~~~L~~~a~~lgL~V~Fl--------------------G~ 594 (781)
...|++..++++-+ +... ..+-.+.|+|..+ +..+++++.++.|+++..+ |.
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg 210 (428)
T cd01965 131 HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG 210 (428)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC
Confidence 35788888777753 3221 1234567776543 4689999999999994332 22
Q ss_pred CCCHH-HHHhcccEEEEccCCCCChHHHHHHHH--hCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhCC
Q 003992 595 RDHAD-DSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAND 668 (781)
Q Consensus 595 v~~~e-~ly~~ADVfVlPS~~EgfGlviLEAMA--~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d~ 668 (781)
..-.+ .-+..|.+-+.-+. -++..+.|+|. +|+|-+....+ .| ....+++.++|.+++..+
T Consensus 211 ~~~e~i~~~~~A~lniv~~~--~~~~~~a~~L~e~~GiP~~~~~~p-~G----------~~~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 211 TTLEEIRDAGNAKATIALGE--YSGRKAAKALEEKFGVPYILFPTP-IG----------LKATDEFLRALSKLSGKP 274 (428)
T ss_pred CcHHHHHHhccCcEEEEECh--hhhHHHHHHHHHHHCCCeeecCCC-cC----------hHHHHHHHHHHHHHHCCC
Confidence 22233 34555665554443 34667777775 89999986532 11 134566777777766543
No 256
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.28 E-value=4.5e+02 Score=30.53 Aligned_cols=98 Identities=7% Similarity=-0.088 Sum_probs=60.7
Q ss_pred EEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-HHHHHHHHhcCCcEEEcCCCCCHH--HHH--hcccEE
Q 003992 534 GAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-YEVQSAAKRLDLNLNFQKGRDHAD--DSL--HGYKVF 608 (781)
Q Consensus 534 ~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-~~L~~~a~~lgL~V~FlG~v~~~e--~ly--~~ADVf 608 (781)
+.+....+..-.-..-|+ +++++.+|++.+++.-.-+-. +..++..... ..+.|++...... ..+ -.-|+.
T Consensus 52 vWiHaaSVGEv~a~~pLv---~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~-v~h~YlP~D~~~~v~rFl~~~~P~l~ 127 (419)
T COG1519 52 VWIHAASVGEVLAALPLV---RALRERFPDLRILVTTMTPTGAERAAALFGDS-VIHQYLPLDLPIAVRRFLRKWRPKLL 127 (419)
T ss_pred EEEEecchhHHHHHHHHH---HHHHHhCCCCCEEEEecCccHHHHHHHHcCCC-eEEEecCcCchHHHHHHHHhcCCCEE
Confidence 345555555544444444 455667899988887644444 3333333221 3366666533222 343 345666
Q ss_pred EEccCCCCChHHHHHHHHhCCcEEEeCC
Q 003992 609 INPSISDVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 609 VlPS~~EgfGlviLEAMA~G~PVVaSd~ 636 (781)
|+. .+|-||+.+.|+-+.|+|+|..|.
T Consensus 128 Ii~-EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 128 IIM-ETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred EEE-eccccHHHHHHHHHcCCCEEEEee
Confidence 654 579999999999999999998866
No 257
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.23 E-value=1.5e+02 Score=27.84 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=34.8
Q ss_pred cCccCHHHH--HHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCC-CCCHHHHHhcccEEE
Q 003992 542 VWAKGYREL--IDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKG-RDHADDSLHGYKVFI 609 (781)
Q Consensus 542 ~~~KGid~L--LeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~-v~~~e~ly~~ADVfV 609 (781)
..+|+.+.. ++++..+.+..++.-+++.|+++....++. +++.|..|...|. .....++...||=|+
T Consensus 74 ~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~-l~~~g~~V~v~~~~~~~s~~L~~~ad~f~ 143 (146)
T PF01936_consen 74 GGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRK-LRERGKRVIVVGAEDSASEALRSAADEFI 143 (146)
T ss_dssp --S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHH-HHHH--EEEEEE-GGGS-HHHHHHSSEEE
T ss_pred cccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHH-HHHcCCEEEEEEeCCCCCHHHHHhcCEEE
Confidence 345666654 467766654445777788888766555554 4567888777774 223347889999776
No 258
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=23.16 E-value=4.6e+02 Score=29.58 Aligned_cols=129 Identities=19% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCc-EEEcCCCC------CH--H--HHHhcccEEEEcc--CCCCChHHHHHHHHhC
Q 003992 562 DGFKLDVFGNGEDAYEVQSAAKRLDLN-LNFQKGRD------HA--D--DSLHGYKVFINPS--ISDVLCTATAEALAMG 628 (781)
Q Consensus 562 p~i~LvIVG~Gp~~~~L~~~a~~lgL~-V~FlG~v~------~~--e--~ly~~ADVfVlPS--~~EgfGlviLEAMA~G 628 (781)
.+-+++|+|.|......-+...+.|.. |.+..... +. + .+...+||++..| ..-..|+...|.+.--
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~ 252 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI 252 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc
Confidence 456778888887765555555556654 54433321 11 1 4567899999863 3344566666655432
Q ss_pred CcEEEeCC--CCc-ceeecCCccccCCCHHHHHHHHHHHHhCCCCCCChHHHHcCCHHHHHHHHHHHhh
Q 003992 629 KFVICADH--PSN-EFFRSFPNCLTYKTSEDFVARVKEALANDPQPLTPEQRYNLSWEAATQRFIEYSE 694 (781)
Q Consensus 629 ~PVVaSd~--gg~-g~L~~~~ngv~~~D~eeLa~aI~~LL~d~~~r~~m~~~~~fSWe~iaerll~~Ye 694 (781)
.+-+.-|. |-+ +.+ ....++...|.++|.+.+.+-+.. |.+.......--+..+.++.+.|+
T Consensus 253 ~~r~~iDLAvPRdId~v-~~~~~v~Ly~iDdL~~i~~~n~~~---R~~~~~~ae~iI~~~~~~~~~~~~ 317 (338)
T PRK00676 253 PDRIVFDFNVPRTFPWS-ETPFPHRYLDMDFISEWVQKHLQC---RKEVNNKHKLSLREAAYKQWESYE 317 (338)
T ss_pred cCcEEEEecCCCCCccc-cccCCcEEEEhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233333 322 221 111223346777777766664432 222222233445667778888888
No 259
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=23.01 E-value=7.2e+02 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=33.4
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
.+|.+|+......-.. +-++...|+|||+.+...... .-..+..++.+....+...+.+.
T Consensus 55 ~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~~---~~~~v~~d~~~~g~~~~~~l~~~ 114 (264)
T cd06267 55 RVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDGL---GVDSVGIDNRAGAYLAVEHLIEL 114 (264)
T ss_pred CcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccCC---CCCEEeeccHHHHHHHHHHHHHC
Confidence 5676666554433222 778889999999987653221 11113335555555555555543
No 260
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=22.91 E-value=1.4e+02 Score=31.92 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=51.5
Q ss_pred cEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEE-cCCCCCHHHHHhc--ccEEE
Q 003992 533 KGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNF-QKGRDHADDSLHG--YKVFI 609 (781)
Q Consensus 533 ~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~F-lG~v~~~e~ly~~--ADVfV 609 (781)
+.+.| ||...-|=-..+++.++++++..+.+++-+ +.|+ .++..++. |-. .|... .++.. +|+++
T Consensus 144 ~~~G~-gr~~e~~~~~~~~~~l~~ik~~l~~v~val-~~g~---~~~~~i~~----V~vcAgsg~---svlk~~~adly~ 211 (272)
T KOG4131|consen 144 ETIGY-GREEETKINLNVVEILKRIKRGLSSVRVAL-AVGH---TLESQIKK----VAVCAGSGS---SVLKGVDADLYI 211 (272)
T ss_pred ccccc-cceeeccCcccHHHHHHHHHhcCCeEEEee-ccCC---ccccceeE----EEEeeccCc---ceeccccccEEE
Confidence 44555 887765544448888888776656565543 2333 12222221 111 11111 12333 55555
Q ss_pred EccCCCCChHHHHHHHHhCCcEEEeCCCCc--cee
Q 003992 610 NPSISDVLCTATAEALAMGKFVICADHPSN--EFF 642 (781)
Q Consensus 610 lPS~~EgfGlviLEAMA~G~PVVaSd~gg~--g~L 642 (781)
.- |.-=--+++|++.|+-||..++... ||+
T Consensus 212 TG---EmSHH~vL~~~~~g~sVilc~HSNtERgfL 243 (272)
T KOG4131|consen 212 TG---EMSHHDVLDAAANGISVILCEHSNTERGFL 243 (272)
T ss_pred ec---cccHHHHHHHHHcCCeEEEecCCCccchhH
Confidence 21 2222348999999999999988754 554
No 261
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.91 E-value=9.2e+02 Score=28.72 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=66.3
Q ss_pred EEeeccCccCHHHHHHHHHHhh-c-------cCCCcEEEEEeCC----CCHHHHHHHHHhcCCcEEEc------------
Q 003992 537 FLGKMVWAKGYRELIDLLAKHK-N-------DLDGFKLDVFGNG----EDAYEVQSAAKRLDLNLNFQ------------ 592 (781)
Q Consensus 537 fVGRL~~~KGid~LLeA~~~L~-~-------~~p~i~LvIVG~G----p~~~~L~~~a~~lgL~V~Fl------------ 592 (781)
|+| ....|++..++++-+.. . ..++-++-|+|+- .+..+++.+.+..|+++..+
T Consensus 188 F~G--s~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~ 265 (515)
T TIGR01286 188 FVG--SHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPAD 265 (515)
T ss_pred Ccc--cHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEEccCccccccCCCC
Confidence 556 55678888887775332 1 1234456677622 23488999999999995543
Q ss_pred -------CCCCCHH-HHHhcccEEEEccCCCCChHHHHHHHH--hCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHH
Q 003992 593 -------KGRDHAD-DSLHGYKVFINPSISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVK 662 (781)
Q Consensus 593 -------G~v~~~e-~ly~~ADVfVlPS~~EgfGlviLEAMA--~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~ 662 (781)
|...-.+ .-...|.+-|.-+. -.+..+.|.|. +|.|.+....+ .| ....++|..+|.
T Consensus 266 g~~~~~~ggttleei~~a~~A~~~ivl~~--~~~~~~a~~l~~~~g~p~~~~~~P-iG----------i~~Td~fL~~la 332 (515)
T TIGR01286 266 GEFRMYAGGTTLEEMKDAPNAEATVLLQP--YTLRKTKEYIEKTWKQETPKLNIP-LG----------VKGTDEFLMKVS 332 (515)
T ss_pred CCccccCCCCCHHHHHHhhhCcEEEEEch--hhhHHHHHHHHHHhCCCcccCCCC-cc----------HHHHHHHHHHHH
Confidence 2233233 33444444333222 22456677766 89998776544 11 134566777777
Q ss_pred HHHhC
Q 003992 663 EALAN 667 (781)
Q Consensus 663 ~LL~d 667 (781)
+++..
T Consensus 333 ~~~g~ 337 (515)
T TIGR01286 333 EISGQ 337 (515)
T ss_pred HHHCC
Confidence 76654
No 262
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=22.62 E-value=1.1e+02 Score=30.76 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=26.2
Q ss_pred HhcccEEEEccC----CCCCh--HHHHHHHHhCCcEEEeCCC
Q 003992 602 LHGYKVFINPSI----SDVLC--TATAEALAMGKFVICADHP 637 (781)
Q Consensus 602 y~~ADVfVlPS~----~EgfG--lviLEAMA~G~PVVaSd~g 637 (781)
-..+|++|+.-. .||-| -.+.+|++.|+||+++=..
T Consensus 91 ~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 91 AEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred hcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 344788888753 34444 4699999999999998443
No 263
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.48 E-value=5.2e+02 Score=29.21 Aligned_cols=112 Identities=12% Similarity=0.194 Sum_probs=66.2
Q ss_pred cCccCHHHHHHHHHHhhcc------CCCcEEEEEeCC---CCHHHHHHHHHhcCCc--EEEcCCCCCHH-HHHhcccEEE
Q 003992 542 VWAKGYRELIDLLAKHKND------LDGFKLDVFGNG---EDAYEVQSAAKRLDLN--LNFQKGRDHAD-DSLHGYKVFI 609 (781)
Q Consensus 542 ~~~KGid~LLeA~~~L~~~------~p~i~LvIVG~G---p~~~~L~~~a~~lgL~--V~FlG~v~~~e-~ly~~ADVfV 609 (781)
....|++..++++.+.... .++-.+-|+|.- .+..+++.+.++.|++ ..|.|..+-.+ .-+..|.+-|
T Consensus 133 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~ni 212 (406)
T cd01967 133 SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNL 212 (406)
T ss_pred cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEE
Confidence 3456788777776543221 123457777762 2458899999999999 33444444444 3455566555
Q ss_pred EccCCCCChHHHHHHHH--hCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 610 NPSISDVLCTATAEALA--MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 610 lPS~~EgfGlviLEAMA--~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
..+.. ++..+.+.|. +|+|.+... . +-..+.+++.+.|.+++..
T Consensus 213 v~~~~--~~~~~a~~L~~r~GiP~~~~~------p------~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 213 VHCSR--SMNYLAREMEERYGIPYMEVN------F------YGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred EEChH--HHHHHHHHHHHhhCCCEEEec------C------CcHHHHHHHHHHHHHHhCC
Confidence 54432 3555555553 899998631 1 1224566777777777654
No 264
>PLN02928 oxidoreductase family protein
Probab=22.30 E-value=2.5e+02 Score=31.48 Aligned_cols=40 Identities=3% Similarity=0.016 Sum_probs=24.0
Q ss_pred CCCHHHHHhcccEEEEc--cCCCCC---hHHHHHHHHhCCcEEEe
Q 003992 595 RDHADDSLHGYKVFINP--SISDVL---CTATAEALAMGKFVICA 634 (781)
Q Consensus 595 v~~~e~ly~~ADVfVlP--S~~Egf---GlviLEAMA~G~PVVaS 634 (781)
....+++++.||++++. ...|+- +-..+..|--|.-+|-+
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEEC
Confidence 34556899999977754 344443 44566666555544443
No 265
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=22.17 E-value=1.1e+02 Score=27.77 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHhcccEEEEccCCCCCh-HHHHHHHHhCCcEEEeCCCCcc
Q 003992 600 DSLHGYKVFINPSISDVLC-TATAEALAMGKFVICADHPSNE 640 (781)
Q Consensus 600 ~ly~~ADVfVlPS~~EgfG-lviLEAMA~G~PVVaSd~gg~g 640 (781)
..+..+++++...-.+... ....+|-+.|+||-++|.+...
T Consensus 56 ~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~ 97 (103)
T PF13241_consen 56 EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELC 97 (103)
T ss_dssp GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCC
T ss_pred HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCC
Confidence 3577788777665443333 3445566699999999988654
No 266
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.82 E-value=1.2e+03 Score=26.44 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEeC-----------CCCH---HHHHHHHHhcCCcEEEcCC-CCCHHHHHhcccEEEE
Q 003992 546 GYRELIDLLAKHKNDLDGFKLDVFGN-----------GEDA---YEVQSAAKRLDLNLNFQKG-RDHADDSLHGYKVFIN 610 (781)
Q Consensus 546 Gid~LLeA~~~L~~~~p~i~LvIVG~-----------Gp~~---~~L~~~a~~lgL~V~FlG~-v~~~e~ly~~ADVfVl 610 (781)
..+.+++.+..+++. .++++..|. |... ..|.+..++.|+.+.-..+ ..+.+.+...+|++-.
T Consensus 130 ~~~~~~~~A~~lk~~--g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lkI 207 (360)
T PRK12595 130 SYEQVEAVAKALKAK--GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQI 207 (360)
T ss_pred CHHHHHHHHHHHHHc--CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEEE
Confidence 355667777766653 344544441 2222 5666777778866332222 2233344455999999
Q ss_pred ccCCCCChHHHHHHHH-hCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 611 PSISDVLCTATAEALA-MGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 611 PS~~EgfGlviLEAMA-~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
||. +..-..+++++| .|+||+.+.. .. .+.+++..++..+.+.
T Consensus 208 ~s~-~~~n~~LL~~~a~~gkPVilk~G----~~---------~t~~e~~~Ave~i~~~ 251 (360)
T PRK12595 208 GAR-NMQNFELLKAAGRVNKPVLLKRG----LS---------ATIEEFIYAAEYIMSQ 251 (360)
T ss_pred Ccc-cccCHHHHHHHHccCCcEEEeCC----CC---------CCHHHHHHHHHHHHHC
Confidence 995 444467777765 6999998742 21 3567788888887753
No 267
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=21.76 E-value=8.8e+02 Score=27.17 Aligned_cols=124 Identities=11% Similarity=0.092 Sum_probs=67.6
Q ss_pred HHHHHhcCCEEEEcCh---hhhhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhhCcCCCCcEEEEEeeccCccCHHH
Q 003992 478 NWVTRAYCDKVLRLSA---ATQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRE 549 (781)
Q Consensus 478 r~l~r~~aD~VI~vS~---~~k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~ 549 (781)
+.+.+ |+|.|+.=.. ...++.+ ..+.++|+-+ ...+|.. -....+..|..-....|.|+|-+.. .=..-
T Consensus 96 rvls~-y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~-~v~~S 172 (334)
T PRK01713 96 RVLGR-MYDAIEYRGFKQSIVNELAEYAGVPVFNGLT-DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN-NMGNS 172 (334)
T ss_pred HHHHH-hCCEEEEEcCchHHHHHHHHhCCCCEEECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc-CHHHH
Confidence 33455 6898877554 2233332 2245678754 3445532 1223444441123467889997532 12333
Q ss_pred HHHHHHHhhccCCCcEEEEEeCCCCH--HH----HHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEcc
Q 003992 550 LIDLLAKHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 612 (781)
Q Consensus 550 LLeA~~~L~~~~p~i~LvIVG~Gp~~--~~----L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS 612 (781)
++.++.++ ++++.+++.-... +. .++.++..|..+.+ .++.++.+..|||+...+
T Consensus 173 l~~~~~~~-----g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~---~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 173 LLLIGAKL-----GMDVRICAPKALLPEASLVEMCEKFAKESGARITV---TDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred HHHHHHHc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEE---EcCHHHHhCCCCEEEEcc
Confidence 66666554 5788888842211 22 23444445655554 356668999999998764
No 268
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.64 E-value=7.7e+02 Score=25.00 Aligned_cols=61 Identities=7% Similarity=-0.086 Sum_probs=31.7
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCcceeecCCccccCCCHHHHHHHHHHHHhC
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICADHPSNEFFRSFPNCLTYKTSEDFVARVKEALAN 667 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~g~L~~~~ngv~~~D~eeLa~aI~~LL~d 667 (781)
.+|.+++.+..+.-.-.+-++...|+|||..+..-.+ ..-+.+..++.+....+...++..
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~~~~~~~~l~~~ 115 (268)
T cd06289 55 GVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAG---APFDYVGPDNAAGARLATEHLISL 115 (268)
T ss_pred CCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCC---CCCCEEeecchHHHHHHHHHHHHC
Confidence 4675555443322112456777889999988643111 011113335555555555666554
No 269
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.45 E-value=5.2e+02 Score=27.58 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=21.9
Q ss_pred cccEEE-EccCCCCChHHHHHHHHhCCcEEEeCCC
Q 003992 604 GYKVFI-NPSISDVLCTATAEALAMGKFVICADHP 637 (781)
Q Consensus 604 ~ADVfV-lPS~~EgfGlviLEAMA~G~PVVaSd~g 637 (781)
.+|.+| .|...+...-.+-++.+.|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 456444 4544344445567778899999998754
No 270
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=21.35 E-value=6.6e+02 Score=27.37 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=63.2
Q ss_pred EEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCH-------HHHHH----HHHhcCCcEEEcCCCCCHHHHHh
Q 003992 535 AYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDA-------YEVQS----AAKRLDLNLNFQKGRDHADDSLH 603 (781)
Q Consensus 535 ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~-------~~L~~----~a~~lgL~V~FlG~v~~~e~ly~ 603 (781)
-+|+|.-...+-+..+.++...-.+-.=.+-+.+++.|+.. ..+-. ++.++|-+|.=..+..+.
T Consensus 117 ~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~----- 191 (265)
T COG1830 117 TVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP----- 191 (265)
T ss_pred EEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh-----
Confidence 36788777777777777777665443322333345555433 11222 344455444333333333
Q ss_pred cccEEEEccCCCCChHHHHHHHHhCCcEEEeCCCCc-------------------ceeecCCccccCCCHHHHHHHHHHH
Q 003992 604 GYKVFINPSISDVLCTATAEALAMGKFVICADHPSN-------------------EFFRSFPNCLTYKTSEDFVARVKEA 664 (781)
Q Consensus 604 ~ADVfVlPS~~EgfGlviLEAMA~G~PVVaSd~gg~-------------------g~L~~~~ngv~~~D~eeLa~aI~~L 664 (781)
|.|--++ -+||+|||++-.+.. |. .-+.|.+.-.+|+.|.++|..+
T Consensus 192 -----------e~F~~vv---~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~-~~GRNifQ~~~p~~m~~Ai~~I 256 (265)
T COG1830 192 -----------ESFRRVV---AACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGV-AVGRNIFQHEDPEAMVKAIQAI 256 (265)
T ss_pred -----------HHHHHHH---HhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcch-hhhhhhhccCChHHHHHHHHHH
Confidence 3332222 367888888754422 22 2344556668889999998888
Q ss_pred HhCCC
Q 003992 665 LANDP 669 (781)
Q Consensus 665 L~d~~ 669 (781)
..+..
T Consensus 257 vhe~~ 261 (265)
T COG1830 257 VHENA 261 (265)
T ss_pred hcCCC
Confidence 76543
No 271
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=21.34 E-value=1.1e+03 Score=25.93 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=65.9
Q ss_pred HHHhcCCEEEEcChh---hhhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhhCcCCCCcEEEEEeeccCccCHHHHH
Q 003992 480 VTRAYCDKVLRLSAA---TQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQQAFSKGAYFLGKMVWAKGYRELI 551 (781)
Q Consensus 480 l~r~~aD~VI~vS~~---~k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~Gi~~~~~~ILfVGRL~~~KGid~LL 551 (781)
+.+ |+|.|++=... ...+.+ ..+.++|+-+. ..+|.. -...++.+|.- +...|.++|-+. .=..-++
T Consensus 91 ls~-y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~-~~HPtQaL~Dl~Ti~e~~g~l-~g~~v~~vGd~~--~v~~Sl~ 165 (304)
T TIGR00658 91 LSR-YVDGIMARVYKHEDVEELAKYASVPVINGLTD-LFHPCQALADLLTIIEHFGKL-KGVKVVYVGDGN--NVCNSLM 165 (304)
T ss_pred HHH-hCCEEEEECCChHHHHHHHHhCCCCEEECCCC-CCChHHHHHHHHHHHHHhCCC-CCcEEEEEeCCC--chHHHHH
Confidence 444 68988776552 233332 12446676443 344532 22334455532 346778999762 2334455
Q ss_pred HHHHHhhccCCCcEEEEEeCCCCH--HHH----HHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEcc
Q 003992 552 DLLAKHKNDLDGFKLDVFGNGEDA--YEV----QSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPS 612 (781)
Q Consensus 552 eA~~~L~~~~p~i~LvIVG~Gp~~--~~L----~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS 612 (781)
.++.++ ++++.+++.-... +.+ ++.+++.|..+... ++.++.+..|||+...+
T Consensus 166 ~~l~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~---~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 166 LAGAKL-----GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELT---HDPVEAVKGADVIYTDV 224 (304)
T ss_pred HHHHHc-----CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE---cCHHHHhCCCCEEEEcC
Confidence 555543 4788988842211 222 23345556555432 56667999999998875
No 272
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=21.19 E-value=4e+02 Score=28.73 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccCCCCChHHHHHHHHhCCcEEEe
Q 003992 562 DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 562 p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
++++++.+-+ +..+..++.+++++.. ....+.++++..+|+++..+......-.+.+++..|++|++.
T Consensus 30 ~~~el~aV~d-r~~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 30 PGLTLSAVAV-RDPQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVL 97 (271)
T ss_pred CCeEEEEEEC-CCHHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEe
Confidence 5677775543 3444455566554421 123456678889999998887777777788999999999975
No 273
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=21.14 E-value=9.5e+02 Score=26.98 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=68.4
Q ss_pred HHHHhcCCEEEEcCh---hhhhcCC-CcEEeeCCCCCCCCCCCc----chhhHhhhCc-CCCCcEEEEEeeccCccCHHH
Q 003992 479 WVTRAYCDKVLRLSA---ATQDLPK-SVICNVHGVNPKFLQIGE----KVATDREQGQ-QAFSKGAYFLGKMVWAKGYRE 549 (781)
Q Consensus 479 ~l~r~~aD~VI~vS~---~~k~l~~-kivvi~nGVD~~~f~p~~----~~~~r~~~Gi-~~~~~~ILfVGRL~~~KGid~ 549 (781)
.+.+ |+|.|+.=.. .+.++.+ ..+.++|+-+. ..+|.. -...++.+|. .-....|.|+|-+.. .=..-
T Consensus 96 vls~-y~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~-~v~~S 172 (336)
T PRK03515 96 VLGR-MYDGIQYRGYGQEIVETLAEYAGVPVWNGLTN-EFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN-NMGNS 172 (336)
T ss_pred HHHH-hCcEEEEEeCChHHHHHHHHhCCCCEEECCCC-CCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC-cHHHH
Confidence 3445 6898876554 2333333 22456687553 445532 2233445541 223467889996422 22445
Q ss_pred HHHHHHHhhccCCCcEEEEEeCCCCH--HH----HHHHHHhcCCcEEEcCCCCCHHHHHhcccEEEEccC
Q 003992 550 LIDLLAKHKNDLDGFKLDVFGNGEDA--YE----VQSAAKRLDLNLNFQKGRDHADDSLHGYKVFINPSI 613 (781)
Q Consensus 550 LLeA~~~L~~~~p~i~LvIVG~Gp~~--~~----L~~~a~~lgL~V~FlG~v~~~e~ly~~ADVfVlPS~ 613 (781)
++.++..+ ++.+.+++.-... +. .++.+++.|.++.+. ++.++.+..+||+...++
T Consensus 173 l~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~---~d~~ea~~~aDvvytd~W 234 (336)
T PRK03515 173 LLEAAALT-----GLDLRLVAPKACWPEAALVTECRALAQKNGGNITLT---EDIAEGVKGADFIYTDVW 234 (336)
T ss_pred HHHHHHHc-----CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEE---cCHHHHhCCCCEEEecCc
Confidence 56665543 6889998842211 22 234445556555543 566678999999988764
No 274
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.92 E-value=8.1e+02 Score=25.24 Aligned_cols=59 Identities=20% Similarity=0.125 Sum_probs=31.0
Q ss_pred cccEEEEcc-CCCCChHHHHHHHHhCCcEEEeCCCCc---ceeecCCccccCCCHHHHHHHHHHHHh
Q 003992 604 GYKVFINPS-ISDVLCTATAEALAMGKFVICADHPSN---EFFRSFPNCLTYKTSEDFVARVKEALA 666 (781)
Q Consensus 604 ~ADVfVlPS-~~EgfGlviLEAMA~G~PVVaSd~gg~---g~L~~~~ngv~~~D~eeLa~aI~~LL~ 666 (781)
.+|.+++.+ ..+...-.+-++...|+|||..+.... ..+ .++..++.+....+...+++
T Consensus 55 ~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~----~~v~~d~~~~g~~~~~~l~~ 117 (282)
T cd06318 55 GVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSSINLEAGVV----TQVQSSNAKNGNLVGEWVVG 117 (282)
T ss_pred CCCEEEEecCCccchHHHHHHHHHCCCCEEEecCCCCCCcCeE----EEEecCcHHHHHHHHHHHHH
Confidence 466555533 223323335666788999999875321 111 11333555555555555554
No 275
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=20.88 E-value=1.5e+02 Score=32.01 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHhhccC--CCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHHHHHhc
Q 003992 552 DLLAKHKNDL--DGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHADDSLHG 604 (781)
Q Consensus 552 eA~~~L~~~~--p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e~ly~~ 604 (781)
..|+.+.+++ |++.++++|+|++++ +.++.++..+.=++..++...++.+
T Consensus 217 ~cFe~I~~Rfg~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~~h~Dl~~l~~a 268 (274)
T TIGR01658 217 QCFKWIKERFGHPKVRFCAIGDGWEEC---TAAQAMNWPFVKIDLHPDSSHRFPG 268 (274)
T ss_pred HHHHHHHHHhCCCCceEEEeCCChhHH---HHHHhcCCCeEEeecCCCHHHhCcc
Confidence 3445554443 689999999998775 4566677664444555555555544
No 276
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.63 E-value=5.5e+02 Score=22.11 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=36.8
Q ss_pred CcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCC-CCHHH-HHHHHHhcCCc-EEE
Q 003992 532 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNG-EDAYE-VQSAAKRLDLN-LNF 591 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~G-p~~~~-L~~~a~~lgL~-V~F 591 (781)
...|++.|.-.. .....+-+++.++..+.|+.. +|-|+. .--+. ..+.+++.++. +.|
T Consensus 3 g~rVli~GgR~~-~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 3 GMRVLITGGRDW-TDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVIRF 63 (71)
T ss_pred CCEEEEEECCcc-ccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeEEe
Confidence 345666665443 378888999988888888765 455544 22333 34567777776 444
No 277
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.30 E-value=2.1e+02 Score=26.39 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=42.8
Q ss_pred EEEEEeCCCCH---HHHHHHHHhcCCcEEEcCCCCCHH---HHHhcccEEEEccCCCC---ChHHHHHHHHhCCcEEEeC
Q 003992 565 KLDVFGNGEDA---YEVQSAAKRLDLNLNFQKGRDHAD---DSLHGYKVFINPSISDV---LCTATAEALAMGKFVICAD 635 (781)
Q Consensus 565 ~LvIVG~Gp~~---~~L~~~a~~lgL~V~FlG~v~~~e---~ly~~ADVfVlPS~~Eg---fGlviLEAMA~G~PVVaSd 635 (781)
++.++|.|... ..+.......+..+.+........ ..+..-|+++.-|..-. .--.+-.|-..|.|||+--
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT 81 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAIT 81 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 47889988655 344444455566665554322111 33456688888886522 2233455667799999874
Q ss_pred CC
Q 003992 636 HP 637 (781)
Q Consensus 636 ~g 637 (781)
..
T Consensus 82 ~~ 83 (128)
T cd05014 82 GN 83 (128)
T ss_pred CC
Confidence 43
No 278
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=20.16 E-value=5.5e+02 Score=28.96 Aligned_cols=101 Identities=13% Similarity=-0.034 Sum_probs=58.1
Q ss_pred CcEEEEEeeccCccCHHHHHHHHHHhhccCCCcEEEEEeCCCCHHHHHHHHHhcCCcEEEcCCCCCHH--HHHhc--ccE
Q 003992 532 SKGAYFLGKMVWAKGYRELIDLLAKHKNDLDGFKLDVFGNGEDAYEVQSAAKRLDLNLNFQKGRDHAD--DSLHG--YKV 607 (781)
Q Consensus 532 ~~~ILfVGRL~~~KGid~LLeA~~~L~~~~p~i~LvIVG~Gp~~~~L~~~a~~lgL~V~FlG~v~~~e--~ly~~--ADV 607 (781)
+.+.+..+.+....-. +..+..+.+.+|++++++.-..+....+.......++.+.+++...... .+++. -|+
T Consensus 51 ~~iW~Ha~s~Ge~~~~---~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~ 127 (425)
T PRK05749 51 PLIWFHAVSVGETRAA---IPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKL 127 (425)
T ss_pred CeEEEEeCCHHHHHHH---HHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCE
Confidence 3455777777754444 4444555556788877655433333332222222234456665422222 44443 477
Q ss_pred EEEccCCCCChHHHHHHHHhCCcEEEeCC
Q 003992 608 FINPSISDVLCTATAEALAMGKFVICADH 636 (781)
Q Consensus 608 fVlPS~~EgfGlviLEAMA~G~PVVaSd~ 636 (781)
+++- .+|.++..+..+-..|+|+|..+.
T Consensus 128 v~~~-~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 128 VIIM-ETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred EEEE-ecchhHHHHHHHHHCCCCEEEEec
Confidence 7654 357888888888899999998753
No 279
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.13 E-value=1.9e+02 Score=28.25 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHhhccC-CCcEEEEEeCCCCH-HHHHHHHHhcCCc-EEEcCCC--C--CHH-------HHHhc--ccEEE
Q 003992 546 GYRELIDLLAKHKNDL-DGFKLDVFGNGEDA-YEVQSAAKRLDLN-LNFQKGR--D--HAD-------DSLHG--YKVFI 609 (781)
Q Consensus 546 Gid~LLeA~~~L~~~~-p~i~LvIVG~Gp~~-~~L~~~a~~lgL~-V~FlG~v--~--~~e-------~ly~~--ADVfV 609 (781)
--.+++.+..++.++. ..+..+++|+.+.. +.+++....+|.+ |...... . +.+ ++++. +|+++
T Consensus 16 ~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl 95 (164)
T PF01012_consen 16 VSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVL 95 (164)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3456888888887754 34778888853443 5667767768877 4443221 1 222 44444 78999
Q ss_pred EccCCCCChHHHHHHHHhCCcEEEe
Q 003992 610 NPSISDVLCTATAEALAMGKFVICA 634 (781)
Q Consensus 610 lPS~~EgfGlviLEAMA~G~PVVaS 634 (781)
+|+...+-.+.-.=|..+|.|+|+-
T Consensus 96 ~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 96 FGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp EESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred EcCcCCCCcHHHHHHHHhCCCccce
Confidence 9998888778888888999998865
Done!