Query 003994
Match_columns 780
No_of_seqs 780 out of 2866
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 10:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003994.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003994hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pl1a1 c.23.1.1 (A:1-119) Pho 99.9 8E-25 5.8E-29 201.4 18.4 117 88-208 1-118 (119)
2 d1zesa1 c.23.1.1 (A:3-123) Pho 99.9 1.2E-24 8.7E-29 200.4 16.3 118 89-208 2-120 (121)
3 d1kgsa2 c.23.1.1 (A:2-123) Pho 99.9 2.2E-24 1.6E-28 198.8 16.3 120 87-210 1-121 (122)
4 d1dbwa_ c.23.1.1 (A:) Transcri 99.9 4.7E-24 3.4E-28 197.3 17.9 120 85-208 1-121 (123)
5 d1ys7a2 c.23.1.1 (A:7-127) Tra 99.9 1.4E-24 1.1E-28 200.3 13.9 117 89-209 3-120 (121)
6 d1krwa_ c.23.1.1 (A:) NTRC rec 99.9 2.1E-24 1.6E-28 199.4 13.7 121 86-210 2-123 (123)
7 d2a9pa1 c.23.1.1 (A:2-118) DNA 99.9 6.6E-24 4.8E-28 194.5 16.6 115 89-208 2-117 (117)
8 d1mb3a_ c.23.1.1 (A:) Cell div 99.9 2.8E-24 2E-28 198.1 13.9 119 88-208 2-121 (123)
9 d1zh2a1 c.23.1.1 (A:2-120) Tra 99.9 6.1E-24 4.4E-28 195.2 15.8 116 89-209 2-118 (119)
10 d1mvoa_ c.23.1.1 (A:) PhoP rec 99.9 6.3E-24 4.6E-28 195.4 15.8 117 88-208 3-120 (121)
11 d1peya_ c.23.1.1 (A:) Sporulat 99.9 8.9E-24 6.5E-28 194.3 16.6 114 89-206 3-117 (119)
12 d1jbea_ c.23.1.1 (A:) CheY pro 99.9 1.2E-23 8.5E-28 195.6 17.4 122 86-209 3-126 (128)
13 d1w25a1 c.23.1.1 (A:2-140) Res 99.9 1.1E-23 8.3E-28 198.5 16.8 121 88-210 2-123 (139)
14 d1ny5a1 c.23.1.1 (A:1-137) Tra 99.9 1.2E-23 8.9E-28 197.8 16.7 118 88-209 1-119 (137)
15 d1xhfa1 c.23.1.1 (A:2-122) Aer 99.9 2.1E-23 1.5E-27 192.3 17.8 115 89-208 4-119 (121)
16 d2ayxa1 c.23.1.1 (A:817-949) S 99.9 1.4E-23 9.9E-28 196.6 16.3 121 86-210 7-128 (133)
17 d1p6qa_ c.23.1.1 (A:) CheY pro 99.9 7.5E-24 5.4E-28 197.3 13.7 122 86-209 5-128 (129)
18 d1zgza1 c.23.1.1 (A:2-121) Tor 99.9 4.8E-23 3.5E-27 189.0 18.0 117 88-209 2-119 (120)
19 d1qkka_ c.23.1.1 (A:) Transcri 99.9 2.1E-23 1.5E-27 197.0 15.6 118 89-210 2-120 (140)
20 d2r25b1 c.23.1.1 (B:1087-1214) 99.9 3E-23 2.2E-27 193.3 15.9 120 88-208 2-126 (128)
21 d1u0sy_ c.23.1.1 (Y:) CheY pro 99.9 4.5E-23 3.3E-27 189.2 16.4 114 88-205 2-117 (118)
22 d1i3ca_ c.23.1.1 (A:) Response 99.9 1E-22 7.4E-27 193.1 19.3 125 88-212 4-136 (144)
23 d1k68a_ c.23.1.1 (A:) Response 99.9 7.6E-23 5.5E-27 193.1 18.2 125 88-212 3-135 (140)
24 d1dcfa_ c.23.1.2 (A:) Receiver 99.9 4.7E-23 3.4E-27 193.2 15.0 122 84-208 4-129 (134)
25 d1k66a_ c.23.1.1 (A:) Response 99.9 7.4E-23 5.4E-27 195.1 16.3 125 88-212 7-142 (149)
26 d1s8na_ c.23.1.1 (A:) Probable 99.9 6.2E-23 4.5E-27 202.2 14.3 119 87-210 3-123 (190)
27 d1p2fa2 c.23.1.1 (A:1-120) Res 99.9 9.9E-23 7.2E-27 187.5 14.5 117 87-210 2-119 (120)
28 d1yioa2 c.23.1.1 (A:3-130) Res 99.9 1E-22 7.3E-27 189.0 13.7 117 89-209 4-121 (128)
29 d1w25a2 c.23.1.1 (A:141-293) R 99.9 1.9E-22 1.4E-26 193.3 16.0 121 86-210 12-133 (153)
30 d1dz3a_ c.23.1.1 (A:) Sporulat 99.9 1.4E-22 1E-26 187.1 14.2 118 88-208 2-122 (123)
31 d1a04a2 c.23.1.1 (A:5-142) Nit 99.9 8.7E-22 6.3E-26 184.9 16.7 119 87-209 2-123 (138)
32 d2b4aa1 c.23.1.1 (A:2-119) Hyp 99.8 4.1E-21 3E-25 176.4 10.4 112 87-204 2-114 (118)
33 d1a2oa1 c.23.1.1 (A:1-140) Met 99.8 3E-20 2.2E-24 174.8 12.2 106 85-194 1-110 (140)
34 d1qo0d_ c.23.1.3 (D:) Positive 99.8 1.6E-19 1.2E-23 176.2 9.8 117 84-209 8-125 (189)
35 d1i58a_ d.122.1.3 (A:) Histidi 96.5 0.00056 4.1E-08 63.0 2.9 40 21-60 150-189 (189)
36 d2c2aa2 d.122.1.3 (A:321-481) 96.2 0.00068 4.9E-08 63.2 2.0 38 22-59 121-158 (161)
37 d1ysra1 d.122.1.3 (A:299-446) 96.1 0.0014 1E-07 60.3 3.7 57 3-59 82-146 (148)
38 d1ccwa_ c.23.6.1 (A:) Glutamat 96.1 0.033 2.4E-06 50.5 13.1 117 87-206 3-134 (137)
39 d1r62a_ d.122.1.3 (A:) Nitroge 95.7 0.0018 1.3E-07 59.7 2.3 57 3-60 94-155 (156)
40 d1gkza2 d.122.1.4 (A:186-378) 95.6 0.0014 1E-07 62.2 1.5 37 22-58 150-186 (193)
41 d1bxda_ d.122.1.3 (A:) Histidi 95.5 0.0014 9.8E-08 61.3 0.5 36 24-59 114-149 (161)
42 d1jm6a2 d.122.1.4 (A:1177-1366 95.4 0.0021 1.5E-07 61.5 1.8 37 22-58 141-177 (190)
43 d1id0a_ d.122.1.3 (A:) Histidi 95.3 0.0024 1.8E-07 58.5 1.8 56 3-58 81-143 (146)
44 d1xrsb1 c.23.6.1 (B:102-261) D 94.6 0.13 9.3E-06 47.8 11.6 119 86-209 18-158 (160)
45 d7reqa2 c.23.6.1 (A:561-728) M 93.9 0.22 1.6E-05 46.5 11.8 117 86-206 36-163 (168)
46 d2fhpa1 c.66.1.46 (A:1-182) Pu 83.6 2.4 0.00018 39.0 10.0 70 88-157 65-138 (182)
47 d3bula2 c.23.6.1 (A:741-896) M 81.7 1.3 9.7E-05 40.3 7.1 97 89-189 8-117 (156)
48 d1r8ja2 c.23.1.5 (A:1-135) N-t 80.3 4.9 0.00036 35.8 10.1 117 87-210 4-126 (135)
49 d2fpoa1 c.66.1.46 (A:10-192) M 79.9 1.6 0.00011 40.3 7.0 77 89-168 68-147 (183)
50 d1id1a_ c.2.1.9 (A:) Rck domai 78.4 5.8 0.00042 34.7 10.3 99 86-190 25-124 (153)
51 d1kzyc2 c.15.1.4 (C:1867-1972) 77.5 0.56 4.1E-05 40.4 2.7 83 84-184 2-88 (106)
52 d1qpoa1 c.1.17.1 (A:117-285) Q 76.7 1.8 0.00013 39.9 6.3 94 89-188 52-151 (169)
53 d7reqb2 c.23.6.1 (B:476-638) M 76.6 1.1 8.4E-05 41.1 4.8 113 86-204 34-157 (163)
54 d1xi3a_ c.1.3.1 (A:) Thiamin p 76.0 16 0.0012 33.7 13.2 88 114-208 103-203 (206)
55 d1o4ua1 c.1.17.1 (A:104-273) Q 72.3 1.9 0.00014 39.9 5.2 94 89-189 50-150 (170)
56 d1wv2a_ c.1.31.1 (A:) Thiazole 72.2 32 0.0023 33.1 14.5 99 103-207 119-229 (243)
57 d1i7qb_ c.23.16.1 (B:) Anthran 68.5 5.4 0.0004 36.7 7.6 74 89-169 2-83 (192)
58 d1dxea_ c.1.12.5 (A:) 2-dehydr 66.6 20 0.0015 34.5 11.8 98 103-203 7-108 (253)
59 d1ws6a1 c.66.1.46 (A:15-185) M 66.6 7.5 0.00055 35.0 8.1 69 87-156 63-133 (171)
60 d1wl8a1 c.23.16.1 (A:1-188) GM 66.3 4.1 0.0003 36.9 6.2 75 88-169 1-79 (188)
61 d2esra1 c.66.1.46 (A:28-179) P 65.8 4.1 0.0003 36.0 5.9 78 88-168 38-119 (152)
62 d1xm3a_ c.1.31.1 (A:) Thiazole 65.1 6.5 0.00047 38.2 7.4 98 103-207 117-227 (251)
63 d2csua3 c.23.4.1 (A:291-453) A 64.2 36 0.0026 29.6 12.3 116 87-209 3-158 (163)
64 d1izca_ c.1.12.5 (A:) Macropho 62.7 32 0.0024 33.8 12.7 104 99-205 27-138 (299)
65 d2ifta1 c.66.1.46 (A:11-193) P 62.2 5.6 0.00041 36.3 6.3 80 88-168 67-151 (183)
66 d2hkja3 d.122.1.2 (A:10-228) T 61.6 3.5 0.00025 38.9 4.8 30 24-53 100-130 (219)
67 d1w0ma_ c.1.1.1 (A:) Triosepho 58.1 71 0.0052 29.5 13.9 79 107-190 110-201 (226)
68 d1zh8a1 c.2.1.3 (A:4-131,A:276 57.3 34 0.0024 30.3 10.9 106 85-205 1-114 (181)
69 d1a53a_ c.1.2.4 (A:) Indole-3- 57.2 43 0.0032 32.1 12.1 89 98-191 139-232 (247)
70 d1qapa1 c.1.17.1 (A:130-296) Q 57.2 6.3 0.00046 36.1 5.6 91 89-189 52-148 (167)
71 d1xeaa1 c.2.1.3 (A:2-122,A:267 56.1 14 0.001 32.5 7.8 103 88-205 2-109 (167)
72 d1thfd_ c.1.2.1 (D:) Cyclase s 53.6 42 0.0031 31.7 11.5 80 119-203 152-242 (253)
73 d2fy8a1 c.2.1.9 (A:116-244) Po 52.9 15 0.0011 30.9 7.2 93 87-189 21-114 (129)
74 d1mxsa_ c.1.10.1 (A:) KDPG ald 52.7 13 0.00093 35.3 7.2 96 100-201 7-105 (216)
75 d2tpsa_ c.1.3.1 (A:) Thiamin p 51.3 69 0.005 29.7 12.5 89 115-209 120-222 (226)
76 d1ydwa1 c.2.1.3 (A:6-133,A:305 48.8 50 0.0036 29.1 10.5 106 88-205 2-113 (184)
77 d1yxya1 c.1.2.5 (A:4-233) Puta 48.2 50 0.0037 29.8 10.7 86 99-191 117-212 (230)
78 d2f1ka2 c.2.1.6 (A:1-165) Prep 46.9 77 0.0056 27.1 11.4 84 89-176 2-97 (165)
79 d1y0ea_ c.1.2.5 (A:) Putative 46.5 66 0.0048 28.6 11.2 70 116-191 125-204 (222)
80 d1vhca_ c.1.10.1 (A:) Hypothet 46.0 24 0.0018 33.1 8.0 60 138-201 42-102 (212)
81 d2dria_ c.93.1.1 (A:) D-ribose 45.7 32 0.0024 31.2 8.9 65 100-170 20-90 (271)
82 d2qy9a2 c.37.1.10 (A:285-495) 45.4 36 0.0026 31.8 9.1 108 86-193 36-164 (211)
83 d1susa1 c.66.1.1 (A:21-247) Ca 43.6 41 0.003 31.6 9.3 54 88-141 85-144 (227)
84 d2bfwa1 c.87.1.8 (A:218-413) G 43.6 1E+02 0.0073 26.8 12.2 108 86-207 65-175 (196)
85 d1ls1a2 c.37.1.10 (A:89-295) G 43.6 54 0.0039 30.3 10.1 103 86-191 37-157 (207)
86 d2hmva1 c.2.1.9 (A:7-140) Ktn 43.0 28 0.0021 29.0 7.3 93 86-189 22-116 (134)
87 d1lssa_ c.2.1.9 (A:) Ktn Mja21 42.2 88 0.0064 25.8 10.8 94 86-189 22-116 (132)
88 d1vl0a_ c.2.1.2 (A:) DTDP-4-de 41.8 15 0.0011 34.1 5.7 50 88-139 2-58 (281)
89 d1jr1a1 c.1.5.1 (A:17-112,A:23 41.7 1.5E+02 0.011 29.7 14.0 101 87-190 131-250 (378)
90 d1rzua_ c.87.1.8 (A:) Glycogen 41.0 37 0.0027 34.3 9.2 109 90-208 324-440 (477)
91 d2bisa1 c.87.1.8 (A:1-437) Gly 40.3 97 0.0071 29.7 12.1 107 87-207 283-392 (437)
92 d1qdlb_ c.23.16.1 (B:) Anthran 39.8 8.1 0.00059 35.1 3.3 78 89-169 3-84 (195)
93 d1wxxa2 c.66.1.51 (A:65-382) H 39.8 39 0.0029 33.1 8.9 55 87-141 167-223 (318)
94 d1lssa_ c.2.1.9 (A:) Ktn Mja21 39.6 90 0.0065 25.7 10.2 94 88-191 1-97 (132)
95 d2basa1 c.1.33.1 (A:2-262) Hyp 38.2 31 0.0022 32.4 7.5 92 100-194 134-237 (261)
96 d2b78a2 c.66.1.51 (A:69-385) H 37.5 38 0.0028 33.3 8.3 54 88-141 168-225 (317)
97 d1wa3a1 c.1.10.1 (A:2-203) KDP 37.3 43 0.0031 31.0 8.2 55 142-199 42-96 (202)
98 d1qopa_ c.1.2.4 (A:) Trp synth 36.6 42 0.003 32.5 8.2 58 148-208 82-145 (267)
99 d1xj5a_ c.66.1.17 (A:) Spermid 36.1 25 0.0018 34.4 6.5 67 88-156 105-183 (290)
100 d1j8yf2 c.37.1.10 (F:87-297) G 35.9 44 0.0032 31.0 8.1 116 86-204 39-175 (211)
101 d1gtea2 c.1.4.1 (A:533-844) Di 35.7 29 0.0021 33.7 7.0 60 148-209 243-309 (312)
102 d1y5ea1 c.57.1.1 (A:12-166) Mo 35.6 42 0.0031 29.2 7.5 45 97-141 19-69 (155)
103 d1eepa_ c.1.5.1 (A:) Inosine m 35.6 34 0.0025 34.8 7.7 65 121-190 153-219 (388)
104 d1vmaa2 c.37.1.10 (A:82-294) G 35.5 75 0.0055 29.4 9.7 106 86-191 38-164 (213)
105 d2a9va1 c.23.16.1 (A:1-196) GM 34.8 2.4 0.00017 39.2 -1.5 74 87-169 1-80 (196)
106 d2f06a2 d.58.18.11 (A:1-70) Hy 34.6 43 0.0031 25.9 6.4 25 91-115 8-32 (70)
107 d2pv7a2 c.2.1.6 (A:92-243) Pre 34.6 1.1E+02 0.0079 25.7 10.1 97 87-189 9-106 (152)
108 d2iw1a1 c.87.1.8 (A:2-371) Lip 34.5 32 0.0023 32.2 6.9 92 103-207 241-335 (370)
109 d1wbha1 c.1.10.1 (A:1-213) KDP 34.3 57 0.0042 30.4 8.6 35 168-203 92-126 (213)
110 d1vrda1 c.1.5.1 (A:1-85,A:213- 34.3 56 0.0041 32.3 9.0 99 86-190 109-229 (330)
111 d1ka9h_ c.23.16.1 (H:) GAT sub 33.4 12 0.00088 33.2 3.3 44 88-139 1-44 (195)
112 d2as0a2 c.66.1.51 (A:73-396) H 33.2 82 0.0059 30.6 10.1 54 88-141 169-225 (324)
113 d2f9fa1 c.87.1.8 (A:2-167) Fir 33.0 1.3E+02 0.0098 25.2 12.3 108 86-208 38-151 (166)
114 d1h5ya_ c.1.2.1 (A:) Cyclase s 32.2 1.4E+02 0.011 27.7 11.4 80 119-202 154-243 (252)
115 d1ep3a_ c.1.4.1 (A:) Dihydroor 31.9 43 0.0032 32.0 7.5 60 148-210 230-295 (311)
116 d2igta1 c.66.1.51 (A:1-309) Pu 31.8 35 0.0026 33.7 6.9 55 87-141 154-212 (309)
117 d1vlja_ e.22.1.2 (A:) NADH-dep 31.0 67 0.0049 32.1 9.1 64 88-155 35-112 (398)
118 d1twda_ c.1.30.1 (A:) Copper h 30.9 61 0.0044 31.0 8.2 90 95-189 97-195 (247)
119 d1ka9f_ c.1.2.1 (F:) Cyclase s 30.5 82 0.006 29.4 9.2 80 119-202 152-241 (251)
120 d1okkd2 c.37.1.10 (D:97-303) G 30.0 96 0.007 28.4 9.4 105 86-190 33-158 (207)
121 d1h6da1 c.2.1.3 (A:51-212,A:37 29.6 1.8E+02 0.013 26.2 11.4 109 85-206 31-148 (221)
122 d2b2ca1 c.66.1.17 (A:3-314) Sp 29.5 17 0.0013 36.2 4.0 53 88-143 131-190 (312)
123 d1mjfa_ c.66.1.17 (A:) Putativ 29.5 55 0.004 31.4 7.8 65 88-156 96-178 (276)
124 d1zfja1 c.1.5.1 (A:2-94,A:221- 28.8 49 0.0036 33.4 7.5 65 121-190 109-175 (365)
125 d1a1va1 c.37.1.14 (A:190-325) 28.7 49 0.0036 27.3 6.5 85 86-171 32-135 (136)
126 d1inla_ c.66.1.17 (A:) Spermid 28.6 19 0.0014 35.5 4.1 67 87-156 113-192 (295)
127 d1usga_ c.93.1.1 (A:) Leucine- 28.4 67 0.0049 30.1 8.2 87 89-180 140-237 (346)
128 d1iy9a_ c.66.1.17 (A:) Spermid 28.2 20 0.0015 34.8 4.1 65 88-155 100-176 (274)
129 d1uf3a_ d.159.1.6 (A:) Hypothe 28.1 70 0.0051 27.8 7.8 68 87-174 5-75 (228)
130 d1o2da_ e.22.1.2 (A:) Alcohol 27.7 60 0.0044 32.0 7.9 65 87-155 28-106 (359)
131 d1i4na_ c.1.2.4 (A:) Indole-3- 27.5 1.7E+02 0.013 27.7 10.9 100 99-203 138-247 (251)
132 d2o07a1 c.66.1.17 (A:16-300) S 27.5 29 0.0021 33.8 5.2 54 87-143 102-162 (285)
133 d1qopa_ c.1.2.4 (A:) Trp synth 26.8 1.1E+02 0.0078 29.3 9.4 97 90-191 126-234 (267)
134 d1mkza_ c.57.1.1 (A:) MoaB {Es 26.7 53 0.0038 29.2 6.6 51 90-140 13-74 (170)
135 d1eepa_ c.1.5.1 (A:) Inosine m 26.5 3E+02 0.022 27.2 13.8 101 87-190 163-282 (388)
136 d1wyza1 c.90.1.1 (A:2-234) Put 26.2 57 0.0042 30.2 7.0 86 85-176 28-125 (233)
137 d1dxya2 c.23.12.1 (A:1-100,A:3 25.8 74 0.0054 26.7 7.1 102 88-198 1-105 (131)
138 d1ye8a1 c.37.1.11 (A:1-178) Hy 25.4 59 0.0043 27.6 6.5 41 132-172 98-140 (178)
139 d1sc6a2 c.23.12.1 (A:7-107,A:2 25.1 58 0.0042 27.8 6.3 91 86-190 3-98 (132)
140 d2avda1 c.66.1.1 (A:44-262) CO 25.1 76 0.0055 29.3 7.6 91 27-141 48-143 (219)
141 d1geqa_ c.1.2.4 (A:) Trp synth 24.8 49 0.0035 31.6 6.2 52 147-201 68-125 (248)
142 d1u6ka1 c.127.1.1 (A:2-283) F4 24.7 43 0.0031 32.1 5.5 62 125-192 57-119 (282)
143 d1rrma_ e.22.1.2 (A:) Lactalde 24.5 54 0.0039 32.6 6.9 64 88-155 31-107 (385)
144 d1vrda1 c.1.5.1 (A:1-85,A:213- 24.2 1.8E+02 0.013 28.4 10.8 100 86-190 61-166 (330)
145 d1p0ka_ c.1.4.1 (A:) Isopenten 24.2 2.3E+02 0.017 26.8 11.6 90 99-193 146-263 (329)
146 d2naca2 c.23.12.1 (A:1-147,A:3 23.9 25 0.0018 32.5 3.7 80 101-190 57-142 (186)
147 d1wa3a1 c.1.10.1 (A:2-203) KDP 23.4 1.5E+02 0.011 27.0 9.3 99 102-209 94-199 (202)
148 d1dbqa_ c.93.1.1 (A:) Purine r 23.3 66 0.0048 29.2 6.8 65 100-171 19-89 (282)
149 d1jdfa1 c.1.11.2 (A:138-446) D 23.1 33 0.0024 33.6 4.7 74 117-195 102-179 (309)
150 d1wx0a1 c.1.10.1 (A:1-211) Dec 23.0 1.1E+02 0.0083 27.9 8.4 86 103-190 102-193 (211)
151 d1geqa_ c.1.2.4 (A:) Trp synth 22.9 93 0.0068 29.5 7.9 97 90-191 112-220 (248)
152 d1ujpa_ c.1.2.4 (A:) Trp synth 22.7 32 0.0023 33.5 4.4 52 147-201 79-136 (271)
153 d1q6oa_ c.1.2.3 (A:) 3-keto-L- 22.2 40 0.0029 29.9 4.7 83 118-204 11-99 (213)
154 d1wd7a_ c.113.1.1 (A:) Probabl 22.1 2.7E+02 0.02 25.2 12.6 102 99-209 135-252 (254)
155 d2cl5a1 c.66.1.1 (A:3-216) Cat 22.1 79 0.0057 28.9 7.0 91 27-141 45-140 (214)
156 d2nzug1 c.93.1.1 (G:58-332) Gl 21.8 1.4E+02 0.01 26.7 8.9 64 99-170 21-90 (275)
157 d1vc4a_ c.1.2.4 (A:) Indole-3- 20.9 1.5E+02 0.011 28.2 8.9 80 105-190 148-235 (254)
158 d1b0aa1 c.2.1.7 (A:123-288) Me 20.7 44 0.0032 30.1 4.7 59 83-145 33-93 (166)
159 d1tlta1 c.2.1.3 (A:5-127,A:268 20.4 79 0.0057 27.1 6.3 100 88-205 2-108 (164)
160 d1zfja1 c.1.5.1 (A:2-94,A:221- 20.3 2E+02 0.015 28.5 10.3 99 87-191 119-239 (365)
161 d1uwva2 c.66.1.40 (A:75-432) r 20.1 52 0.0038 32.1 5.6 80 87-171 234-316 (358)
No 1
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=8e-25 Score=201.35 Aligned_cols=117 Identities=26% Similarity=0.453 Sum_probs=112.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
||||||||++.++..++.+|+.+||+|.+|.++.+|++++++ ..||+||+|+ ||+++|++++++||+. .+.+|||
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~dliilD~~mP~~~G~e~~~~i~~~--~~~~pvi 76 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPIL 76 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHT--TCCSCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cccceeehhccCCCchhHHHHHHHHhc--CcccceE
Confidence 589999999999999999999999999999999999999998 7899999999 9999999999999875 3789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+..+.+...+++++||++||.|||+.++|..+|+++++|
T Consensus 77 ~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR 118 (119)
T d2pl1a1 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (119)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eeeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987
No 2
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=1.2e-24 Score=200.42 Aligned_cols=118 Identities=26% Similarity=0.446 Sum_probs=114.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|||||||++.++..+..+|+..||+|..|.++.+|++++.+ ..||+||+|+ ||+++|++++++||+....+.+|||+
T Consensus 2 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~--~~~dlil~D~~mp~~~G~~l~~~lr~~~~~~~~pvi~ 79 (121)
T d1zesa1 2 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 79 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHSSS--SCCSEEEECSSCTTSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHc--cCCCEEEeecCCCCCCHHHHHHHHHhCccCCCCeEEE
Confidence 79999999999999999999999999999999999999986 7899999999 99999999999999887788999999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|++.+.....+++++||++||.|||+.++|..+|+.+++|
T Consensus 80 lt~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~v~~~lrR 120 (121)
T d1zesa1 80 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 120 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999986
No 3
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.91 E-value=2.2e-24 Score=198.84 Aligned_cols=120 Identities=24% Similarity=0.411 Sum_probs=113.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.+||||||||+.++..++.+|+.+||+|.+|.++++|++.+.. ..|||||+|+ ||+++|++++++||.. .+.+||
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~--~~~dlillD~~mp~~~g~~~~~~lr~~--~~~~pi 76 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKSMRES--GVNTPV 76 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHT--TCCCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcchHHHHHHHHh--hCccccccccccccchhHHHHHHHHhc--CCCCcE
Confidence 3799999999999999999999999999999999999999998 7899999999 9999999999999865 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|++|++.+.+...+++++||++||.|||++++|..+|+++++|+.
T Consensus 77 I~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~r~~ 121 (122)
T d1kgsa2 77 LMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 121 (122)
T ss_dssp EEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCHHHHHHHHHcCCceeecCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998863
No 4
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.91 E-value=4.7e-24 Score=197.26 Aligned_cols=120 Identities=22% Similarity=0.408 Sum_probs=113.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
|+..|||||||++.++..++.+|+..||+|..+.++++|++++.+ ..|||||+|+ ||+++|++++++||+. .+.+
T Consensus 1 M~~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvi~D~~mp~~~G~e~~~~lr~~--~~~~ 76 (123)
T d1dbwa_ 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDL--KINI 76 (123)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHT--TCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--cCCcEEEEeccCccccchHHHHHHHhc--CCCC
Confidence 356799999999999999999999999999999999999999987 7899999999 9999999999999864 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||++|++.+.+...+|+++||++||.|||++++|..+|++++++
T Consensus 77 ~iI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~a~e~ 121 (123)
T d1dbwa_ 77 PSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (123)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred eEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998764
No 5
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.91 E-value=1.4e-24 Score=200.29 Aligned_cols=117 Identities=30% Similarity=0.478 Sum_probs=112.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|||||||++.++..|..+|+..||+|.+|.++.+|++++++ ..||+||+|+ ||+++|++++++||+. .+.+|||+
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~dlvl~D~~mP~~~G~el~~~ir~~--~~~~piI~ 78 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAM--DNDVPVCV 78 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEEeeccCcccHHHHHHHHhc--CCCCEEEE
Confidence 89999999999999999999999999999999999999998 7899999999 9999999999999865 47899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|++.+.+...+++++||++||.|||++++|..+|+++++|+
T Consensus 79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rr 120 (121)
T d1ys7a2 79 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 120 (121)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999875
No 6
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.91 E-value=2.1e-24 Score=199.41 Aligned_cols=121 Identities=28% Similarity=0.454 Sum_probs=114.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+|||||||+.++..++.+|+..||+|.+|.++.+|++++++ ..|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 2 ~k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~--~~~dlii~D~~mp~~~G~el~~~l~~~--~~~~p 77 (123)
T d1krwa_ 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLP 77 (123)
T ss_dssp CCCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHHHHHHTT--CCCSEEEECCSSSSSTTHHHHHHHHHH--SSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEehhhcCCchHHHHHHHHHHh--CCCCe
Confidence 34579999999999999999999999999999999999999987 7899999999 9999999999999865 47899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|++.+.+...+|+++||++||.|||+.++|..+|++++++++
T Consensus 78 iI~~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~~~q 123 (123)
T d1krwa_ 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123 (123)
T ss_dssp EEESCCCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHHcCCCeEEeCcCCHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998763
No 7
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.91 E-value=6.6e-24 Score=194.47 Aligned_cols=115 Identities=27% Similarity=0.475 Sum_probs=110.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|||||||++.++..+..+|+..||+|..+.++.+|++.+++ ..|||||+|+ ||+++|++++++|++. +.+|||+
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~dlillD~~mp~~~G~~~~~~i~~~---~~~pvI~ 76 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPILM 76 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHTT---CCCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEeccccCCCCccHHHHHHHhC---CCCCEEE
Confidence 79999999999999999999999999999999999999998 6899999999 9999999999999753 5799999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|+..+.+...+++++||++||.|||++++|..+|+++++|
T Consensus 77 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrR 117 (117)
T d2a9pa1 77 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 117 (117)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999875
No 8
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=99.91 E-value=2.8e-24 Score=198.13 Aligned_cols=119 Identities=24% Similarity=0.429 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.|||||||++.++..+..+|+.+||+|..|.++.+|++++++ ..||+||+|+ ||+++|++++++||+......+|||
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~dG~el~~~ir~~~~~~~iPii 79 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEEeccCCCcHHHHHHHHHhCCCcCCCCeE
Confidence 389999999999999999999999999999999999999987 6799999999 9999999999999988778899999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+........+++++|+++||.|||++.+|..+|+++++|
T Consensus 80 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~r 121 (123)
T d1mb3a_ 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (123)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEEEecCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhC
Confidence 999999998999999999999999999999999999999865
No 9
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=6.1e-24 Score=195.25 Aligned_cols=116 Identities=25% Similarity=0.380 Sum_probs=110.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
+||||||++.++..++.+|+.+||+|..+.++++|++++++ ..|||||+|+ ||+++|++++++||+. +.+|||+
T Consensus 2 nILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~dliilD~~mP~~~G~e~~~~ir~~---~~~piI~ 76 (119)
T d1zh2a1 2 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAVPVIV 76 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHTT---CCCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEeccccCCCCCchHHHHHHhc---cCCcEEE
Confidence 69999999999999999999999999999999999999988 6899999999 9999999999999864 5689999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|+..+.+...+++++||++||.|||++++|..+|+++++|.
T Consensus 77 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~ 118 (119)
T d1zh2a1 77 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 118 (119)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999875
No 10
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.91 E-value=6.3e-24 Score=195.37 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=111.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
-|||||||++.++..++.+|+.+||+|.+|.++.+|++++.+ ..|||||+|+ ||+++|+++++++|.. .+.+|||
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~--~~~dlillD~~mp~~~G~~~~~~~r~~--~~~~~ii 78 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQ--KLMFPIL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCCEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--ccccEEEecccccCCCCchhhhhhhcc--CCCCEEE
Confidence 489999999999999999999999999999999999999987 6899999999 9999999999999865 4678999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+..+.+...+++++||++||.|||++++|..+|+++++|
T Consensus 79 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~lrR 120 (121)
T d1mvoa_ 79 MLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 (121)
T ss_dssp EEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999986
No 11
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=99.90 E-value=8.9e-24 Score=194.27 Aligned_cols=114 Identities=25% Similarity=0.531 Sum_probs=109.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|||||||++.++..++.+|+..||+|..+.++.+|++.+++ ..|||||+|+ ||+++|++++++||+.. +++|||+
T Consensus 3 rILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~--~~~dlillD~~mP~~~G~el~~~lr~~~--~~~pvi~ 78 (119)
T d1peya_ 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVII 78 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHHC--TTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHHhC--CCCcEEE
Confidence 89999999999999999999999999999999999999988 6899999999 99999999999998654 7899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
+|++.+.+...+++++||++||.|||++++|..+|++++
T Consensus 79 lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~L 117 (119)
T d1peya_ 79 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117 (119)
T ss_dssp EESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHS
T ss_pred EecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
Confidence 999999999999999999999999999999999998875
No 12
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=1.2e-23 Score=195.56 Aligned_cols=122 Identities=26% Similarity=0.503 Sum_probs=114.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+|||||||++.++..++.+|+.+|| .|..+.++.+|++.++. ..||+||+|+ ||+++|++++++||+....+.+
T Consensus 3 k~lriLvVDD~~~~r~~i~~~L~~~g~~~v~~a~~g~~a~~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~~~~~~~ 80 (128)
T d1jbea_ 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRADGAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHhc--CCCCEEEEecccccCCHHHHHHHHHhCccCCCC
Confidence 568999999999999999999999998 57899999999999987 7899999999 9999999999999988778899
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|++.+.+.+.+++++|+++||.|||+..+|..+|.++++|.
T Consensus 81 piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~ 126 (128)
T d1jbea_ 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999875
No 13
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.90 E-value=1.1e-23 Score=198.45 Aligned_cols=121 Identities=28% Similarity=0.436 Sum_probs=115.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.|||||||++.+++.++.+|+..||+|..|.++.+|++++.+ ..|||||+|+ ||+++|+++++.||.....+++|||
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~dlil~D~~~p~~~G~~~~~~ir~~~~~~~~piI 79 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEccchhhhhhhhc--ccceeeeeeccccCCCchHHHHHhhhcccccCCCEE
Confidence 489999999999999999999999999999999999999998 6899999999 9999999999999988778899999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
++|++.+.+...+|+++||+|||.|||+..+|..+|+.+++++.
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lr~~~ 123 (139)
T d1w25a1 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (139)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987653
No 14
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=99.90 E-value=1.2e-23 Score=197.75 Aligned_cols=118 Identities=25% Similarity=0.456 Sum_probs=112.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
||||||||++.++..+..+|+..||+|..|.++.+|++++.. ..||+||+|+ ||+++|++++++||+. .+++|||
T Consensus 1 mkILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~--~~~dlvilD~~mp~~~G~e~~~~lr~~--~~~~piI 76 (137)
T d1ny5a1 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKER--SPETEVI 76 (137)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHH--CTTSEEE
T ss_pred CEEEEEecCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhc--cccccchHHHhhhhhhHHHHHHHHHHh--CCCCCEE
Confidence 589999999999999999999999999999999999999987 7899999999 9999999999999865 4789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|++.+.+...+|+++||+|||.||+..++|..+|.+++++.
T Consensus 77 ~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (137)
T d1ny5a1 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (137)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 15
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=2.1e-23 Score=192.34 Aligned_cols=115 Identities=27% Similarity=0.476 Sum_probs=110.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|||||||++.++..+..+|+.+||+|..+.++++|++.+.. ..|||||+|+ ||+++|+++++++|+. +++|||+
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~--~~~dlii~D~~mp~~~G~~~~~~~r~~---~~~pii~ 78 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELREQ---ANVALMF 78 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHh--cCCCEEEeecccCCccCcHHHHHHHhc---CCCcEEE
Confidence 89999999999999999999999999999999999999998 7899999999 9999999999999865 5799999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|++.+.+...+++++||+|||.|||++++|..+|+++++|
T Consensus 79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~l~R 119 (121)
T d1xhfa1 79 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 119 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999986
No 16
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=1.4e-23 Score=196.63 Aligned_cols=121 Identities=29% Similarity=0.479 Sum_probs=114.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++.++..+..+|+.+||+|..+.++.+|++++.. ..|||||+|+ ||+++|++++++||+.. +.+|
T Consensus 7 ~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~--~~~dlillD~~mP~~dG~el~~~ir~~~--~~~p 82 (133)
T d2ayxa1 7 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLP 82 (133)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH--SCCSEEEEEESSCSSCCHHHHHHHHHHH--CCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEECcHHHHHHHHhc--cCceEEEEeccCCCCCHHHHHHHHHHhC--CCCC
Confidence 56899999999999999999999999999999999999999987 7899999999 99999999999999765 6799
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|++.+.+...+++++||++||.|||+.++|..+|..+++|.+
T Consensus 83 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~r~r 128 (133)
T d2ayxa1 83 VIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 128 (133)
T ss_dssp EEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988764
No 17
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=99.90 E-value=7.5e-24 Score=197.29 Aligned_cols=122 Identities=27% Similarity=0.478 Sum_probs=114.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
..+|||||||++.++..+..+|+..||. |..+.++++|++++.+ ..|||||+|+ ||+++|++++++||+....+++
T Consensus 5 ~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~--~~~dlii~D~~mP~~~G~el~~~lr~~~~~~~~ 82 (129)
T d1p6qa_ 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh--CCCCeEEeeeecCCCChHHHHHHHHhCcccCCC
Confidence 4679999999999999999999999995 7789999999999987 7899999999 9999999999999987778899
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.+...+++++|+++||.|||+.++|..+|++++++.
T Consensus 83 pii~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~vl~~~ 128 (129)
T d1p6qa_ 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGAL 128 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHCC
T ss_pred eEEEEEecCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998753
No 18
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=4.8e-23 Score=189.00 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=111.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.|||||||++.++..+..+|+..||+|..+.++.+|++++.+ ..||+||+|+ ||+++|+++++.+|.. ..+|||
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~--~~~dliilD~~mp~~~g~~~~~~~~~~---~~~piI 76 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDENGLMLTRALRER---STVGII 76 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHTT---CCCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEeeehhhccchhHHHHHHHhcc---CCCeEE
Confidence 489999999999999999999999999999999999999988 7899999999 9999999999998753 578999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|++.+.....+|+++||+|||.||+++++|..+|+++++|.
T Consensus 77 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~ 119 (120)
T d1zgza1 77 LVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 119 (120)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999885
No 19
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=99.90 E-value=2.1e-23 Score=196.98 Aligned_cols=118 Identities=23% Similarity=0.476 Sum_probs=112.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
+||||||++.++..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+|+|++++++||+. .+++|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlil~D~~mP~~~G~el~~~lr~~--~~~~pvI~ 77 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILAL--DPDLPMIL 77 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEeCChHHHHHHHhc--cCcchHHHhhccCCCCHHHHHHHHHHh--CCCCcEEE
Confidence 79999999999999999999999999999999999999987 7899999999 9999999999999865 47899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
+|++.+.+.+.+|+++||+|||.||++.++|..+|++++++.+
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~ 120 (140)
T d1qkka_ 78 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 120 (140)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEeecCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987654
No 20
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.89 E-value=3e-23 Score=193.32 Aligned_cols=120 Identities=23% Similarity=0.451 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHh---cCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILED---LTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~---~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
+|||||||++.++..+..+|+.+||+ |..|.+|++|++.+++ ....|||||+|+ ||+++|++++++||+.. ...
T Consensus 2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~-~~~ 80 (128)
T d2r25b1 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL-GYT 80 (128)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS-CCC
T ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHcc-CCC
Confidence 68999999999999999999999996 7789999999999864 236799999999 99999999999998654 457
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|||++|++.+.+...+|+++||++||.|||+.++|..+|++++..
T Consensus 81 ~piI~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 126 (128)
T d2r25b1 81 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 126 (128)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999987653
No 21
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.89 E-value=4.5e-23 Score=189.23 Aligned_cols=114 Identities=29% Similarity=0.531 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.|||||||++.++..++.+|+.+||+|. +|.++.+|++.+++ ..||+||+|+ ||+++|++++++||+. .+++||
T Consensus 2 krILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~--~~~dliilD~~mp~~~G~e~~~~ir~~--~~~~pv 77 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKI--DPNAKI 77 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHH--CTTCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHh--ccCCEEEEecCCCCCCHHHHHHHHHHh--CCCCcE
Confidence 5899999999999999999999999987 78999999999997 6899999999 9999999999999865 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
|++|++.+.+...++++.||++||.|||++++|..+|+++
T Consensus 78 i~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v 117 (118)
T d1u0sy_ 78 IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 117 (118)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999875
No 22
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=99.89 E-value=1e-22 Score=193.12 Aligned_cols=125 Identities=20% Similarity=0.297 Sum_probs=114.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhc-----CCCceEEEEcc-CCCCCHHHHHHHHHhhcC
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~-----~~~pDLVLlDi-MP~mdGleLl~~IRs~~~ 159 (780)
.+||||||++..+..++.+|+..| |+|.++.+|.+||+++++. ...|||||+|+ ||+++|++++++||+...
T Consensus 4 k~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir~~~~ 83 (144)
T d1i3ca_ 4 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPD 83 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHHhCcc
Confidence 489999999999999999999876 5888999999999999752 23599999999 999999999999998877
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 003994 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
..++|||++|+..+.+.+.+|+++||++||.||++.++|..+|+.+++.+...
T Consensus 84 ~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l~~~~~~~ 136 (144)
T d1i3ca_ 84 LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWLET 136 (144)
T ss_dssp TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTTT
T ss_pred cCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999999999999999998887544
No 23
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=99.89 E-value=7.6e-23 Score=193.11 Aligned_cols=125 Identities=22% Similarity=0.332 Sum_probs=114.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhc-----CCCceEEEEcc-CCCCCHHHHHHHHHhhcC
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~-----~~~pDLVLlDi-MP~mdGleLl~~IRs~~~ 159 (780)
.|||||||++..+..++.+|++.| |+|..+.+|.+|++++.+. ...|||||+|+ ||+++|++++++||+...
T Consensus 3 krILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~dG~el~~~ir~~~~ 82 (140)
T d1k68a_ 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEEeeccccccChHHHHHHHhCcc
Confidence 389999999999999999999876 6999999999999999642 24599999999 999999999999998877
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 003994 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
.+++|||++|+..+.+.+.+|+++||++||.||++.++|..+|+.+++.+...
T Consensus 83 ~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~~~~~ 135 (140)
T d1k68a_ 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLST 135 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999999999999999999999998887543
No 24
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.89 E-value=4.7e-23 Score=193.17 Aligned_cols=122 Identities=20% Similarity=0.377 Sum_probs=111.8
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc---C
Q 003994 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK---T 159 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~---~ 159 (780)
.+.++|||||||++.++..+..+|+.+||+|.+|.++.+|++.++ ..||+||+|+ ||++||++++++||+.. .
T Consensus 4 d~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~---~~~dlillD~~mP~~dG~el~~~ir~~~~~~~ 80 (134)
T d1dcfa_ 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS---HEHKVVFMDVCMPGVENYQIALRIHEKFTKQR 80 (134)
T ss_dssp CCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC---TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhh---cCCCeEEEEeccCCCchHHHHHHHHHhccccc
Confidence 357889999999999999999999999999999999999999875 4699999999 99999999999998532 3
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.+.+|||++|++.+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 81 ~~~~~ii~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~ 129 (134)
T d1dcfa_ 81 HQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (134)
T ss_dssp SCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999999999998854
No 25
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=99.89 E-value=7.4e-23 Score=195.12 Aligned_cols=125 Identities=22% Similarity=0.334 Sum_probs=115.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc--------CCCceEEEEcc-CCCCCHHHHHHHHHh
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL--------TNHIDLVLTEV-MPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~--------~~~pDLVLlDi-MP~mdGleLl~~IRs 156 (780)
.+||||||++..+..++.+|+..|| +|..|.+|.+|++++++. ...|||||+|+ ||+++|++++++||+
T Consensus 7 ~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ir~ 86 (149)
T d1k66a_ 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQ 86 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTT
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCceEEEEECChHHHHHHHHhhccccccccccCCCeEEccccccCCCcHHHHHHHHh
Confidence 3799999999999999999999998 788999999999999752 13699999999 999999999999998
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 003994 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
....+.+|||++|+..+.+.+.+++++||++||.||++.++|..+|+++++.+...
T Consensus 87 ~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~ 142 (149)
T d1k66a_ 87 DEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLDI 142 (149)
T ss_dssp STTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHhcc
Confidence 77778999999999999999999999999999999999999999999999987544
No 26
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.88 E-value=6.2e-23 Score=202.22 Aligned_cols=119 Identities=30% Similarity=0.485 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+|||||||++.+|..|..+|+..||+|+ +|.++.+|+++++. ..|||||+|+ ||+|||++++++||+. +.+|
T Consensus 3 p~kILiVDD~~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~~~--~~pDlvllDi~mP~~dG~e~~~~ir~~---~~~p 77 (190)
T d1s8na_ 3 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASK---RIAP 77 (190)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHT---TCSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhc--CCCCEEEEeccccCcchHHHHHHHHhc---CCCC
Confidence 36899999999999999999999999976 79999999999998 7899999999 9999999999999864 4689
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|++.+.+.+.+|+++||+|||.||+++++|..+|..++.+.+
T Consensus 78 Ii~lTa~~~~~~~~~al~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 123 (190)
T d1s8na_ 78 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 123 (190)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEeccCCCCHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999998886543
No 27
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=99.88 E-value=9.9e-23 Score=187.49 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=107.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+.|||||||++.+++.+..+|+..|+ |.++.++.+||+. ...|||||+|+ ||+++|++++++||... +.+||
T Consensus 2 M~kILiVDDd~~~~~~l~~~L~~~g~-v~~~~~~~~al~~----~~~~dlillD~~mP~~~G~~~~~~lr~~~--~~~~i 74 (120)
T d1p2fa2 2 MWKIAVVDDDKNILKKVSEKLQQLGR-VKTFLTGEDFLND----EEAFHVVVLDVMLPDYSGYEICRMIKETR--PETWV 74 (120)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTEE-EEEESSHHHHHHC----CSCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhCCE-EEEECCHHHHHhc----CCCCCEEEEeCcccccchhHHHHHHhhcC--CCCcE
Confidence 46999999999999999999999986 8899999999762 25799999999 99999999999998654 78999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|++|+..+.+...+|+++||+|||.|||++++|..+|+++++|.+
T Consensus 75 i~it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~r 119 (120)
T d1p2fa2 75 ILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (120)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred EEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998754
No 28
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=99.88 E-value=1e-22 Score=189.02 Aligned_cols=117 Identities=21% Similarity=0.415 Sum_probs=110.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
+|||||||+.++..|..+|+.+||+|..+.++++|++++.. ..||+||+|+ ||+++|++++++|+.. .+.+|||+
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dliilD~~mp~~~G~~~~~~i~~~--~~~~~ii~ 79 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAI--SDGIPIVF 79 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHT--TCCCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccccccHHHHHHHHHh--cCCCEeehhhhcccchhHHHHHHHHhh--CCCCeEEE
Confidence 89999999999999999999999999999999999999976 7899999999 9999999999999865 47899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|++.+.+...+++++||++||.|||+.++|..+|++++++.
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 121 (128)
T d1yioa2 80 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 121 (128)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 29
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.88 E-value=1.9e-22 Score=193.27 Aligned_cols=121 Identities=26% Similarity=0.350 Sum_probs=110.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+.|||||||++.++..+..+|+..||.|.. ++.+++.++.. ..|||||+|+ ||++||++++++||+....+++|
T Consensus 12 ~~~rILiVDD~~~~~~~l~~~L~~~g~~v~~--~~~~~~~~~~~--~~~DlillD~~mP~~dG~el~~~ir~~~~~~~iP 87 (153)
T d1w25a2 12 LGGRVLIVDDNERQAQRVAAELGVEHRPVIE--SDPEKAKISAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 87 (153)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTTTSEEEEE--CCHHHHHHHHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE--ccHHHHHHHhc--CCCCEEEEECccccccchHHHHHHHhccccccce
Confidence 4569999999999999999999999998743 56778888776 7899999999 99999999999999887788999
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.....+|+++||+|||.|||++++|..+|+.++++.+
T Consensus 88 iI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~ 133 (153)
T d1w25a2 88 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 133 (153)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHhcCcceEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
No 30
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.88 E-value=1.4e-22 Score=187.13 Aligned_cols=118 Identities=25% Similarity=0.442 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G-yeV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+|||||||++.++..+..+|+..| +.+ .+|.+|.+|+++++. ..|||||+|+ ||+|||++++++||+... ..+|
T Consensus 2 irILivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~--~~~dlillD~~mP~~dG~e~~~~ir~~~~-~~~~ 78 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAGFE-HQPN 78 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHHCS-SCCE
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEcCCCCCCCHHHHHHHHHhcCC-CCCe
Confidence 699999999999999999999886 454 489999999999987 6799999999 999999999999986542 3467
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||++|++.+.+...+++++||++||.||+++++|..+|++++++
T Consensus 79 ii~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~k 122 (123)
T d1dz3a_ 79 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 122 (123)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998864
No 31
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=8.7e-22 Score=184.91 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.+|||||||++.++..++.+|+..+ +.|..+.++.+|++++++ ..|||||+|+ ||+++|++++++||+. .+.+
T Consensus 2 Pi~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~~DlvllD~~mP~~~G~el~~~ir~~--~~~~ 77 (138)
T d1a04a2 2 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREK--SLSG 77 (138)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHS--CCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhh--CCCC
Confidence 3699999999999999999998876 456689999999999987 6899999999 9999999999999764 5789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.+.+.+++++||++||.||+++++|..+|+++++..
T Consensus 78 ~vivlt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v~~g~ 123 (138)
T d1a04a2 78 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 123 (138)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEECCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999998754
No 32
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=99.83 E-value=4.1e-21 Score=176.43 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=97.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.+|||||||++.++..+..+|+.+||+|.++.++.+|++.+.+ ...|||||+|+ ||+++|++++++||+. .+.+||
T Consensus 2 p~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~~dliilD~~lp~~~G~el~~~ir~~--~~~~pi 78 (118)
T d2b4aa1 2 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQ-LSTCDLLIVSDQLVDLSIFSLLDIVKEQ--TKQPSV 78 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGG-GGSCSEEEEETTCTTSCHHHHHHHHTTS--SSCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCeEEECCHHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcE
Confidence 4799999999999999999999999999999999999997754 24699999999 9999999999999764 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
|++|+..+. ..+++..|+ |||.|||++++|..+|+.
T Consensus 79 i~lt~~~~~--~~~~~~~~~-dyl~KP~~~~eL~~~i~~ 114 (118)
T d2b4aa1 79 LILTTGRHE--LIESSEHNL-SYLQKPFAISELRAAIDY 114 (118)
T ss_dssp EEEESCC----CCCCSSSCE-EEEESSCCHHHHHHHHHH
T ss_pred EEEECCccH--HHHHhhcCC-CEEECCCCHHHHHHHHHH
Confidence 999997653 335666776 899999999999999875
No 33
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.81 E-value=3e-20 Score=174.83 Aligned_cols=106 Identities=24% Similarity=0.419 Sum_probs=90.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 003994 85 LRSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
|..+|||||||++.++..|+.+|+..|+ .|.++.||.+|++++++ ..|||||+|+ ||+|||++++++||+.. +
T Consensus 1 M~kirVLiVDD~~~~r~~l~~~L~~~g~~~~v~~a~~g~~al~~~~~--~~pDlvllDi~MP~~dG~e~~~~ir~~~--~ 76 (140)
T d1a2oa1 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRLR--P 76 (140)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHSS--C
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHh--cCCCEEEEcCCCCCCCHHHHHHHHHHhC--C
Confidence 3568999999999999999999999984 56689999999999987 6899999999 99999999999998654 4
Q ss_pred CccEEEEecCC-CHHHHHHHHHCCCCeEEeCCCC
Q 003994 162 NLPVIMMSSLD-SMGLVFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 162 ~iPIIvLSa~~-~~e~~~~al~aGAddyL~KP~~ 194 (780)
..+|++++... ..+...+|+++||++||.||+.
T Consensus 77 ~~~i~i~~~~~~~~~~~~~al~~Ga~~yl~KP~~ 110 (140)
T d1a2oa1 77 MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQL 110 (140)
T ss_dssp CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCcEEEEEecCCChHHHHHHHHcCCCEEEECCCC
Confidence 45555555543 2356778999999999999974
No 34
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.78 E-value=1.6e-19 Score=176.21 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=104.6
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 003994 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
.++.+|||||||++.++..|..+|+.+||+|..+.++.+|++ ..||+||+|+ ||+++|+.+.+.++ ..+.
T Consensus 8 ~l~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al~------~~~Dlvl~D~~mp~~~~~~~~~~~~---~~p~ 78 (189)
T d1qo0d_ 8 SLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFD------VPVDVVFTSIFQNRHHDEIAALLAA---GTPR 78 (189)
T ss_dssp TGGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCS------SCCSEEEEECCSSTHHHHHHHHHHH---SCTT
T ss_pred hccCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHHHhcc------CCCCEEEEcCCCCCcHHHHHHHHHH---cCCC
Confidence 357889999999999999999999999999999999999883 4799999999 99988876665443 3578
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|||++|++.+.+.+.+|+++||++||.|||+.++|..+|..++...
T Consensus 79 ~pvI~lta~~~~~~~~~al~~Ga~~yL~KP~~~~~L~~~i~~~~~~~ 125 (189)
T d1qo0d_ 79 TTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 125 (189)
T ss_dssp CEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred CCEEEEeccchHHHHHHHHHcCCcEEEEecchhhHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999998876543
No 35
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=96.45 E-value=0.00056 Score=63.03 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=35.6
Q ss_pred CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 003994 21 GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 21 ~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
.+..-+++||++++++|||.|.++|++|+|++|.+.+|++
T Consensus 150 ~G~GLGLai~k~ive~hgG~I~v~S~~g~GT~f~i~lPlt 189 (189)
T d1i58a_ 150 SGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT 189 (189)
T ss_dssp GTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred CcCccCHHHHHHHHHHCCCEEEEEecCCCCEEEEEEEeCC
Confidence 3445679999999999999999999999999999999864
No 36
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=96.23 E-value=0.00068 Score=63.23 Aligned_cols=38 Identities=13% Similarity=-0.071 Sum_probs=33.3
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 003994 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+..-+++||++|+++|||.|.++|.+|.|++|.+.+|.
T Consensus 121 G~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lP~ 158 (161)
T d2c2aa2 121 GTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 158 (161)
T ss_dssp -CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred cccHHHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEEc
Confidence 34556999999999999999999999999999888874
No 37
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.13 E-value=0.0014 Score=60.30 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=40.5
Q ss_pred CCChhhh--HHHHHHHhhhh------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 003994 3 VDGKADK--RLQELNHCLQA------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
|+|+|.. ...+|+..+.. .+..-+++||++|+++|||.|.++|.++.|++|.+.+|.
T Consensus 82 D~G~Gi~~~~~~~ife~f~r~~~~~~~G~GLGL~i~~~iv~~hgG~i~~~s~~~~Gt~f~i~lP~ 146 (148)
T d1ysra1 82 DNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPG 146 (148)
T ss_dssp ESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred EcCCCCCHHHHHHhcCccccCCCCCCCCccHHHHHHHHHHHHcCCEEEEEEcCCCeEEEEEEEEc
Confidence 5777654 33344444422 234455999999999999999999999999998887773
No 38
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=96.13 E-value=0.033 Score=50.50 Aligned_cols=117 Identities=9% Similarity=-0.001 Sum_probs=84.1
Q ss_pred ccEEEE--E--eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC--HHHHHHHHHh
Q 003994 87 SLKVLL--V--ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS--GVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLI--V--DDD~~~r~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md--GleLl~~IRs 156 (780)
+.+||| + |-+..=..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |.... -.+++++||+
T Consensus 3 k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~--~~~d~v~lS~~~~~~~~~~~~~~~~l~~ 80 (137)
T d1ccwa_ 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDE 80 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHH
T ss_pred CCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHh--cCCCEEEEeeccccchHHHHHHHHHHHH
Confidence 346776 3 5566677889999999999998 34578899999887 6799999988 75421 1245667765
Q ss_pred hcCCCCccEEEEecC----C-CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 003994 157 HKTRKNLPVIMMSSL----D-SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~----~-~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
.. ..++|||+=-.- . ..+...+..+.|++.++.....++++.+.|++-+
T Consensus 81 ~~-~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~t~~~~~~~~l~~~l 134 (137)
T d1ccwa_ 81 AG-LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp TT-CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred hc-cCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEECCCCCHHHHHHHHHHHh
Confidence 43 456776644322 1 2445566678999998888888999998888765
No 39
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.68 E-value=0.0018 Score=59.73 Aligned_cols=57 Identities=7% Similarity=-0.130 Sum_probs=36.3
Q ss_pred CCChhhh--HHHHHHHhh---hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 003994 3 VDGKADK--RLQELNHCL---QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l---~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
|+|+|.. ...+++..+ ...+..-+++||++|++.|||.|.++|.+| |++|.+.+|+.
T Consensus 94 D~G~Gi~~~~~~~iF~pf~s~k~~G~GLGL~i~~~iv~~hgG~i~v~s~~g-Gt~f~i~LPl~ 155 (156)
T d1r62a_ 94 DNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLPIR 155 (156)
T ss_dssp EECTTC--------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCCHHHHHhhcccceecCCCCCCchHHHHHHHHHHCCCEEEEEEeCC-cEEEEEEEEec
Confidence 5677665 222333333 223445569999999999999999999998 99998888864
No 40
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=95.64 E-value=0.0014 Score=62.22 Aligned_cols=37 Identities=5% Similarity=-0.255 Sum_probs=32.8
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 003994 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
+..-+++||+.++++|||.|.+.|.+|+|++|.+.++
T Consensus 150 G~GlGL~i~k~ive~~gG~i~v~S~~g~Gt~f~l~L~ 186 (193)
T d1gkza2 150 GFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 186 (193)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred cCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEEEC
Confidence 4566699999999999999999999999998887665
No 41
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=95.47 E-value=0.0014 Score=61.29 Aligned_cols=36 Identities=11% Similarity=-0.243 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 003994 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.-+++||++|+++|||.|.+++..+.|++|.+.+|+
T Consensus 114 GLGL~ivk~iv~~hgG~i~v~s~~~~Gt~f~v~lPl 149 (161)
T d1bxda_ 114 GLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPV 149 (161)
T ss_dssp SCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECC
T ss_pred CchHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEe
Confidence 456999999999999999999999998888777664
No 42
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=95.43 E-value=0.0021 Score=61.53 Aligned_cols=37 Identities=5% Similarity=-0.334 Sum_probs=32.6
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 003994 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
+..-+++||+.|++.|||.|.++|.+|.|++|.+.+|
T Consensus 141 G~GLGL~i~k~ive~hgG~I~v~s~~g~Gt~f~i~lP 177 (190)
T d1jm6a2 141 GFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLK 177 (190)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred CCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEEe
Confidence 4456689999999999999999999999888888776
No 43
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=95.33 E-value=0.0024 Score=58.54 Aligned_cols=56 Identities=13% Similarity=-0.055 Sum_probs=41.0
Q ss_pred CCChhhh--HHHHHHHhhhh-----CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 003994 3 VDGKADK--RLQELNHCLQA-----GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~-----~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
|+|+|.. ...+|+..+.. .+..-+++||++|++.|||.|.+++.++.|++|.+.+|
T Consensus 81 D~G~Gi~~~~~~~iF~~F~r~~~~~~G~GLGL~I~k~iv~~h~G~i~~~s~~~~Gt~f~i~lP 143 (146)
T d1id0a_ 81 DDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFG 143 (146)
T ss_dssp ESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEEC
T ss_pred eeCCCCCHHHHHHHcCCcccCCCCCCCeeHHHHHHHHHHHHcCCEEEEEEcCCCeeEEEEEEe
Confidence 5777654 23344444322 23344589999999999999999999999999988776
No 44
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=94.57 E-value=0.13 Score=47.75 Aligned_cols=119 Identities=8% Similarity=-0.008 Sum_probs=82.4
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCC---------CEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-
Q 003994 86 RSLKVLLV----ENDDSTRHVVAALLRNCG---------YEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG- 147 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~G---------yeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG- 147 (780)
+.++|++. |-+..=..++..+|+..| |+|+. ....++.++.+.+ ..+|+|-+-. |....+
T Consensus 18 r~~~vv~~~~g~D~HdiG~~iv~~~l~~~G~~~~~~~~~~eVi~LG~~vp~e~~v~~a~e--~~~d~VglS~l~t~~~~h 95 (160)
T d1xrsb1 18 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVH 95 (160)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHH
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCCcccccccceEEEeCCCCCCHHHHHHHHHh--cCCCEEEEeecccccchh
Confidence 45566654 555666788899999889 88873 4478889999987 7899999988 765432
Q ss_pred ----HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 003994 148 ----VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 148 ----leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
-++++.|++......+|||+=-...+.+ .+.+.|||.|...-....++...|...++++
T Consensus 96 ~~~~~~~i~~l~~~g~~d~v~vivGG~~~~~~---~a~~~GaD~~f~~g~~a~~~a~~l~~~l~~r 158 (160)
T d1xrsb1 96 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLNDR 158 (160)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEcCCCCCHH---HHHHcCCCEEcCCCCCHHHHHHHHHHHHHHh
Confidence 2566777655433334444333333332 4568899999988788899888888877654
No 45
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=93.94 E-value=0.22 Score=46.54 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=78.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC-C-CHHHHHHHHH
Q 003994 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-L-SGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~-m-dGleLl~~IR 155 (780)
+..||||. |-+..-..++..+|+..||+|+. ....+++++.+.+ ..+|+|.+-. +.. + .--++++.|+
T Consensus 36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~--~~advI~iSs~~~~~~~~~~~l~~~L~ 113 (168)
T d7reqa2 36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELD 113 (168)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHH--HTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCcCcHHHHHHHHHc--cCCCEEEEecCcccchHHHHHHHHHHH
Confidence 45688887 45677788999999999999985 3578899998887 6799999877 432 1 2235667776
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHH-HHHHHHHHH
Q 003994 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVW 206 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~ee-L~~~L~~ll 206 (780)
+.. ..+++| ++-+.-..++.....++|+++++..--...+ +...++.+.
T Consensus 114 ~~g-~~~v~V-ivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~~~~~ 163 (168)
T d7reqa2 114 KLG-RPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 163 (168)
T ss_dssp HTT-CTTSEE-EEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hcC-CCCeEE-EEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHHHHHHH
Confidence 553 345555 4555444556677889999886653333333 444444443
No 46
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}
Probab=83.57 E-value=2.4 Score=39.02 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=53.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhh
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~ 157 (780)
.+|..||-++.....+..-++..+. .+ +...|..++|+.+......||||++|- -......+++..|.+.
T Consensus 65 ~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~ 138 (182)
T d2fhpa1 65 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLER 138 (182)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHC
Confidence 3799999999999999998887654 23 367888888887765456799999996 4345567788887543
No 47
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=81.74 E-value=1.3 Score=40.30 Aligned_cols=97 Identities=13% Similarity=0.246 Sum_probs=64.6
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCH-HHHHHHHHhhc
Q 003994 89 KVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHK 158 (780)
Q Consensus 89 rVLIV----DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG-leLl~~IRs~~ 158 (780)
+|+|. |-+..=..++..+|+..||+|+. -...++.++.+.+ ..+|+|.+-. |.. +.. .++++.|++.
T Consensus 8 kivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~~p~e~~~~~~~~--~~~d~i~lS~l~~~~~~~~~~~~~~l~~~- 84 (156)
T d3bula2 8 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMERQ- 84 (156)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHHT-
T ss_pred EEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--hCCCEEEEecccccchHHHHHHHHHHHhc-
Confidence 55554 55666678899999999999985 3468889999887 6799999988 653 332 3566777654
Q ss_pred CCCCccEEEEecCCCHHHHHHHH---HCCCCeEE
Q 003994 159 TRKNLPVIMMSSLDSMGLVFKCL---SKGAVDFL 189 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~al---~aGAddyL 189 (780)
..++|||+--+........... -.|++.|-
T Consensus 85 -g~~~~vivGG~~~~~~~~~~~~~~~y~gad~ya 117 (156)
T d3bula2 85 -GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYV 117 (156)
T ss_dssp -TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEEC
T ss_pred -cccceEEEecccccchHHHhhhccccccceeec
Confidence 3567777665555444432211 14666554
No 48
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}
Probab=80.31 E-value=4.9 Score=35.76 Aligned_cols=117 Identities=10% Similarity=0.056 Sum_probs=79.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE-ccCCCCCHHHHHHHHHhhcCCCCccE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT-EVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl-DiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.+.|-+.=.++...+.++.+|...-|.+..+.++++.++.+++....+|.+|+ -.- .+-..+..+|.+.. --+|+
T Consensus 4 ~LtI~l~l~s~~L~q~~~q~L~~dRY~l~~~~s~~ef~~~le~~~e~iDcLVl~~~~--~~l~~l~~qL~~~G--lLlPa 79 (135)
T d1r8ja2 4 QIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAAN--PSFRAVVQQLCFEG--VVVPA 79 (135)
T ss_dssp CEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTS--TTHHHHHHHHHHTT--CCCCE
T ss_pred eEEEEEEeCCHHHHHHHHHhcCCCceEEEEcCCHHHHHHHHHhCcccCCEEEEEecC--CccHHHHHHHHhcC--ccccE
Confidence 45677777889999999999987789999999999999999987788999876 322 23355677886654 45788
Q ss_pred EEEecCCCHHHHHHHHHCCCC-----eEEeCCCCHHHHHHHHHHHHHHhc
Q 003994 166 IMMSSLDSMGLVFKCLSKGAV-----DFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAd-----dyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|++.......... ..|-. ....++-..+.|-..|.+++.|.-
T Consensus 80 Viv~~~~~~~~~~---~~~~~~YH~aEv~l~~~qL~ql~~~ID~AIsrFL 126 (135)
T d1r8ja2 80 IVVGDRDSEDPDE---PAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFL 126 (135)
T ss_dssp EEESCCC---------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCC---CCCceeeeeeeEEcCHHHHHHHHHHHHHHHHHHH
Confidence 8885433221110 12222 234445556777777777766643
No 49
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}
Probab=79.87 E-value=1.6 Score=40.30 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=51.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gy-eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+|..||-++...+.++.-++..+. .+. ...+ ++..+......||+|++|- -......+++..|.+......--+
T Consensus 68 ~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d---~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~i 144 (183)
T d2fpoa1 68 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSN---AMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEAL 144 (183)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC---HHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEE
T ss_pred eeEEEEEeechhhHHHHHHhhccccceeeeeec---ccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeE
Confidence 799999999999999999987765 222 3333 5566654456799999996 445556677888765432222234
Q ss_pred EEE
Q 003994 166 IMM 168 (780)
Q Consensus 166 IvL 168 (780)
|++
T Consensus 145 Iii 147 (183)
T d2fpoa1 145 IYV 147 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 50
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}
Probab=78.45 E-value=5.8 Score=34.68 Aligned_cols=99 Identities=10% Similarity=-0.060 Sum_probs=59.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+..|+|||.++.........+...|+.++... .-.+.|+.+.- ...++||+-.-.+..-+.++..+|+ ..+.++
T Consensus 25 ~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i--~~a~~vi~~~~~d~~n~~~~~~~r~--~~~~~~ 100 (153)
T d1id1a_ 25 RGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGI--DRCRAILALSDNDADNAFVVLSAKD--MSSDVK 100 (153)
T ss_dssp TTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTT--TTCSEEEECSSCHHHHHHHHHHHHH--HTSSSC
T ss_pred cCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhcc--ccCCEEEEccccHHHHHHHHHHHHH--hCCCCc
Confidence 356789999887655555555556688877533 22445665543 4577777643112223444555544 357788
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
||+.+.. .+....+.++|++.++.
T Consensus 101 iia~~~~--~~~~~~l~~~Gad~vi~ 124 (153)
T d1id1a_ 101 TVLAVSD--SKNLNKIKMVHPDIILS 124 (153)
T ss_dssp EEEECSS--GGGHHHHHTTCCSEEEC
T ss_pred eEEEEcC--HHHHHHHHHCCCCEEEC
Confidence 8877654 44556677899976653
No 51
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.50 E-value=0.56 Score=40.44 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=53.2
Q ss_pred cCCccEEEEEeCCH-HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcC
Q 003994 84 HLRSLKVLLVENDD-STRHVVAALLRNCGYEVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 84 ~~~~lrVLIVDDD~-~~r~~L~~lL~~~GyeV~~A--~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~ 159 (780)
|+.++|||+|-|.. .+++....+|.-.|..++.. ....+. + +. ...+|+|++|- +|. ++++...+
T Consensus 2 pF~~l~vl~vs~~~~~F~e~Ws~IL~~~Ga~vV~~~~~~~~~s-d-~~--~~~~DVvvTD~scp~----~vl~~a~~--- 70 (106)
T d1kzyc2 2 PFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNK-D-IA--LGVFDVVVTDPSCPA----SVLKCAEA--- 70 (106)
T ss_dssp TTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCC-C-SC--GGGCSEEEECTTCCH----HHHHHHHH---
T ss_pred CCcceEEEEEecccccHHHHHHHHHHhCCceEeeccccchhhc-c-Cc--cccccEEEeCCCCCH----HHHHHHHH---
Confidence 46789999998855 47999999999999866532 222111 0 11 13589999998 875 34444432
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCC
Q 003994 160 RKNLPVIMMSSLDSMGLVFKCLSKG 184 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aG 184 (780)
.++||| +.+-+.+++=.|
T Consensus 71 -~~ipvV------S~EWVIQsLI~G 88 (106)
T d1kzyc2 71 -LQLPVV------SQEWVIQCLIVG 88 (106)
T ss_dssp -HTCCEE------CHHHHHHHHHHT
T ss_pred -cCCcEe------eHHHHHHHHHcc
Confidence 357776 456666666444
No 52
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=76.67 E-value=1.8 Score=39.94 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=62.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---C--CC-EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 003994 89 KVLLVENDDSTRHVVAALLRN---C--GY-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~---~--Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
-|||-|.+-.....+...++. . .. -.+.+.+.+++.+.+.. .+|+|++|-|.-.+--++++.++.. .+
T Consensus 52 ~ilikdNHi~~~g~i~~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~---~~diImLDN~sp~~~k~~v~~~~~~--~~- 125 (169)
T d1qpoa1 52 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVWQTQTAVQRRDSR--AP- 125 (169)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHHHHHHHHHHHHHH--CT-
T ss_pred eEEeehhHHhHhcchhhhhhhhhhhcCCCceEEEeccHHHhhhhhhc---CCcEEEecCcChHhHHHHHHHhhcc--CC-
Confidence 377777776655444444432 2 22 34589999999999874 6899999984333334555555433 23
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeE
Q 003994 163 LPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
-.+|-.|+.-..+.+.+....|+|-+
T Consensus 126 ~i~lEaSGgI~~~ni~~ya~~GvD~I 151 (169)
T d1qpoa1 126 TVMLESSGGLSLQTAATYAETGVDYL 151 (169)
T ss_dssp TCEEEEESSCCTTTHHHHHHTTCSEE
T ss_pred eeEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 34677888888888999999998644
No 53
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=76.58 E-value=1.1 Score=41.05 Aligned_cols=113 Identities=8% Similarity=0.014 Sum_probs=70.2
Q ss_pred CccEEEEEe--CC---HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHH
Q 003994 86 RSLKVLLVE--ND---DSTRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIVD--DD---~~~r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-MP~m--dGleLl~~IR 155 (780)
+..+|+|+- .. ..-......+|...||+|.. .-+..++.+.+.+ ...|+|.+-. +... -.-++++.||
T Consensus 34 ~rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~~~e~v~aa~~--~~a~vvvicssd~~y~~~~~~~~~aLk 111 (163)
T d7reqb2 34 ERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALK 111 (163)
T ss_dssp SCCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCCHHHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCChhhhhhHHHHHHHHHHccCeeeccCCCCCcHHHHHHHHh--CCCCEEEEecCccchHHHHHHHHHHHH
Confidence 345677754 32 22345688889999998773 2356677777766 5678777654 3211 1346888887
Q ss_pred hhcCCCCccEEEEecC-CCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 003994 156 SHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~-~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
+.. ..+ ++|.+. ...+....+.++|+++||.--.+.-+++..+..
T Consensus 112 ~ag--~~~--~vlaGg~~~~~d~~~l~~aGVd~~i~~G~d~~~~l~~l~~ 157 (163)
T d7reqb2 112 AAG--AKA--LYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLD 157 (163)
T ss_dssp HTT--CSE--EEEESCGGGGGGGHHHHHHHCCEEECTTCCHHHHHHHHHH
T ss_pred hcc--cce--eEEEecCCCcccHHHHHhCCCCeEecCCCcHHHHHHHHHH
Confidence 643 333 334333 344455667899999999988776665555444
No 54
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}
Probab=76.03 E-value=16 Score=33.71 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=62.9
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCC-------CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCC
Q 003994 114 VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 114 V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m-------dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGA 185 (780)
...+.+.+++...... .+|.|++.. .+.. -|++.++++.+. ..+||+++-+- +.+.+.++++.||
T Consensus 103 g~s~h~~~e~~~a~~~---g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~---~~~Pv~AiGGI-~~~ni~~~~~~Ga 175 (206)
T d1xi3a_ 103 GASVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---VKIPVVAIGGI-NKDNAREVLKTGV 175 (206)
T ss_dssp EEEESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHH---CSSCEEEESSC-CTTTHHHHHTTTC
T ss_pred ccccCCHHHHHHHHhc---CCCEEEeccccccccccccccccHHHHHHHHHh---cCCCEEEECCC-CHHHHHHHHHhCC
Confidence 3478888888776654 578898886 4321 288999988654 46899999885 4456788999999
Q ss_pred CeE-----EeCCCCHHHHHHHHHHHHHH
Q 003994 186 VDF-----LVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 186 ddy-----L~KP~~~eeL~~~L~~llrr 208 (780)
+++ |..--++.+....+++++..
T Consensus 176 ~gvAvis~I~~~~dp~~~~~~l~~~~~~ 203 (206)
T d1xi3a_ 176 DGIAVISAVMGAEDVRKATEELRKIVEE 203 (206)
T ss_dssp SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred CEEEEhHHHHCCCCHHHHHHHHHHHHHH
Confidence 999 55555676666666666543
No 55
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=72.25 E-value=1.9 Score=39.93 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=62.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCC---EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 003994 89 KVLLVENDDSTRHVVAALLRN----CGY---EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~----~Gy---eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.|||-|.+-.....+...++. ..+ -++.+.+.+++++.+. ..+|+|++|-|.-.+--++.+.++.. .+
T Consensus 50 ~ilikdNHi~~~g~~~~~~~~~~~~~~~~~~I~VEv~~~~e~~~a~~---~g~d~i~LDn~~pe~~k~~~~~lk~~--~~ 124 (170)
T d1o4ua1 50 CVMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVE---AGADIVMLDNLSPEEVKDISRRIKDI--NP 124 (170)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHH---TTCSEEEEESCCHHHHHHHHHHHHHH--CT
T ss_pred ceEEcccHHHHhccHHHHHHHHHhhCCCCceEEEEeCcHHHHHHHHh---cCccEEEEcCcChhhHhHHHHHHHhh--CC
Confidence 377777766655444444443 222 3458999999999987 46899999984322333455666543 23
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEE
Q 003994 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
. ..|..|+.-..+.+.+....|+| ||
T Consensus 125 ~-i~lEaSGGI~~~ni~~~a~~GVD-~I 150 (170)
T d1o4ua1 125 N-VIVEVSGGITEENVSLYDFETVD-VI 150 (170)
T ss_dssp T-SEEEEEECCCTTTGGGGCCTTCC-EE
T ss_pred c-EEEEEECCCCHHHHHHHHHcCCC-EE
Confidence 3 46677888888888888888986 54
No 56
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}
Probab=72.22 E-value=32 Score=33.07 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCccEEEEecCCCHH
Q 003994 103 VAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (780)
Q Consensus 103 L~~lL~~~GyeV~~-A~dg~eALe~L~~~~~~pDLVLlDi-MP-----~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e 175 (780)
....|-+.||.|.. +.+-.-+.+.++.. ... ++|-+ -| +..-...++.|+.. .++|||+=.+-....
T Consensus 119 Aa~~Lv~egF~Vlpy~~~D~v~ak~le~~--Gc~-~vMplgsPIGsg~Gi~n~~~l~~i~~~---~~vpvivdAGIg~ps 192 (243)
T d1wv2a_ 119 AAEQLVKDGFDVMVYTSDDPIIARQLAEI--GCI-AVMPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTAS 192 (243)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS--CCS-EEEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHH
T ss_pred HHHHhhcCceEEEeccCCCHHHHhHHHHc--Cce-eeeecccccccccccccHHHHHhcccc---CCcceEeecccCCHH
Confidence 34466678999984 44443444556552 232 45555 66 33334567777643 679999999999999
Q ss_pred HHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 003994 176 LVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 176 ~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
++..+|++|+|++|. |--++..+..++.....
T Consensus 193 daa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~ 229 (243)
T d1wv2a_ 193 DAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 229 (243)
T ss_dssp HHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCEEEechHhhcCCCHHHHHHHHHHHHH
Confidence 999999999999986 67788888877776554
No 57
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}
Probab=68.50 E-value=5.4 Score=36.66 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=48.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc---CCCC--CHHHHHHHHHhhcCC
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV---MPCL--SGVALLSKIMSHKTR 160 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi---MP~m--dGleLl~~IRs~~~~ 160 (780)
+|||||.-..+-..|..+|+..|++++... ......+.+.. ..+|+|++-- .|.. .-..+.+.+ .
T Consensus 2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~--~~~~~iils~Gpg~~~~~~~~~~i~~~l-----~ 74 (192)
T d1i7qb_ 2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQH--MEQPVLMLSPGPGTPSEAGCMPELLQRL-----R 74 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHH--CSSEEEEECCCSSCGGGSTTHHHHHHHH-----B
T ss_pred cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHh--cCCCeEEecCccccccccccchhhHHhh-----h
Confidence 699999766666678888999999988764 34445666665 5789888742 2221 112222222 3
Q ss_pred CCccEEEEe
Q 003994 161 KNLPVIMMS 169 (780)
Q Consensus 161 ~~iPIIvLS 169 (780)
..+||+-+.
T Consensus 75 ~~iPiLGIC 83 (192)
T d1i7qb_ 75 GQLPIIGIC 83 (192)
T ss_dssp TTBCEEEET
T ss_pred cCccEEeee
Confidence 568998775
No 58
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=66.63 E-value=20 Score=34.50 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=64.2
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 003994 103 VAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 103 L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
|++.|+.-... +..........+++.. ..||.|++|+ -...+--++...|+.-.. ..++.|+=....+...+.+
T Consensus 7 lk~~l~~g~~~~G~~~~~~~p~~~ei~a~--~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~-~g~~~~VRvp~~~~~~i~~ 83 (253)
T d1dxea_ 7 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALKG-SASAPVVRVPTNEPVIIKR 83 (253)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTTT-CSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCEEEEEecCCCHHHHHHHHc--CCCCEEEEecccCCCChhHHHHHHHHHhc-cCCCceecCCCCCHHHHHH
Confidence 55566543222 2223344556666665 5699999999 766776666677765443 3455555566678899999
Q ss_pred HHHCCCCeEEeCCCC-HHHHHHHHH
Q 003994 180 CLSKGAVDFLVKPIR-KNELKNLWQ 203 (780)
Q Consensus 180 al~aGAddyL~KP~~-~eeL~~~L~ 203 (780)
+++.||+++|.--++ .++...+++
T Consensus 84 ~LD~Ga~GIivP~v~s~eea~~~v~ 108 (253)
T d1dxea_ 84 LLDIGFYNFLIPFVETKEEAELAVA 108 (253)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHhcCccEEEecccCCHHHHHHHHH
Confidence 999999999987665 455544443
No 59
>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}
Probab=66.61 E-value=7.5 Score=35.03 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=47.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEccCC-CCCHHHHHHHHHh
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEV-TEATNGLQAWKILEDLTNHIDLVLTEVMP-CLSGVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP-~mdGleLl~~IRs 156 (780)
+.+|..||-++.....++.-++..|+.. +...+....+.........||+||+|- | +.+-.+++..|.+
T Consensus 63 ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP-PY~~~~~~~l~~l~~ 133 (171)
T d1ws6a1 63 GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP-PYAMDLAALFGELLA 133 (171)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC-CTTSCTTHHHHHHHH
T ss_pred cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc-ccccCHHHHHHHHHH
Confidence 3467889999999999999999887743 355667666665554346799999995 2 2333445555543
No 60
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=66.34 E-value=4.1 Score=36.88 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=47.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCC-HHHHHHHHHhhcCCCCc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLS-GVALLSKIMSHKTRKNL 163 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~md-GleLl~~IRs~~~~~~i 163 (780)
|.|||||--..+...|.+.|+..|+++.++.+... ++.+.. ..+|.||+-- . +... -..+++.+. ...+
T Consensus 1 mmI~iiD~g~~~~~~i~~~L~~~G~~~~v~~~~~~-~~~~~~--~~~~gvilsgg~~~~~~~~~~~~i~~~~----~~~~ 73 (188)
T d1wl8a1 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTP-LEEIKA--MNPKGIIFSGGPSLENTGNCEKVLEHYD----EFNV 73 (188)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCC-HHHHHH--TCCSEEEECCCSCTTCCTTHHHHHHTGG----GTCS
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCC-HHHHhh--hccceeeeccCccccccccccccccccc----cccc
Confidence 46999998777777788999999999887765433 333433 3566666543 2 2222 233333332 2468
Q ss_pred cEEEEe
Q 003994 164 PVIMMS 169 (780)
Q Consensus 164 PIIvLS 169 (780)
||+-+.
T Consensus 74 PiLGIC 79 (188)
T d1wl8a1 74 PILGIC 79 (188)
T ss_dssp CEEEET
T ss_pred ceeehh
Confidence 998775
No 61
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}
Probab=65.79 E-value=4.1 Score=36.01 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=50.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.+|..||-++...+.++.-++..+. .+. ...+..+.+.. ....||+|++|. -.......++..|........-
T Consensus 38 ~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~---~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~ 114 (152)
T d2esra1 38 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC---LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQ 114 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH---BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc---cccccceeEechhhccchHHHHHHHHHHCCCcCCC
Confidence 3899999999999999999998875 233 34465555543 346799999994 2222334566776543322222
Q ss_pred cEEEE
Q 003994 164 PVIMM 168 (780)
Q Consensus 164 PIIvL 168 (780)
.+|++
T Consensus 115 g~iii 119 (152)
T d2esra1 115 VMVVC 119 (152)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 34555
No 62
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}
Probab=65.08 E-value=6.5 Score=38.24 Aligned_cols=98 Identities=19% Similarity=0.130 Sum_probs=66.5
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHHhhcCCCCccEEEEecCCCH
Q 003994 103 VAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 103 L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-----leLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
..+.|-+.||.|. +..|..-|.++..- . - .+||=+ -|-.+| ...++.|++. .++|||+=.+-...
T Consensus 117 Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~-G-c--~avMPlgsPIGSg~Gl~n~~~l~~i~~~---~~vPvIvDAGIG~p 189 (251)
T d1xm3a_ 117 ASEQLLEEGFIVLPYTSDDVVLARKLEEL-G-V--HAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSP 189 (251)
T ss_dssp HHHHHHHTTCCEEEEECSCHHHHHHHHHH-T-C--SCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSH
T ss_pred HHHHHHhCCcEEEEecCCCHHHHHHHHHc-C-C--hhHHHhhhhhhcCCCcCChHHHHHHHhc---CCccEEEecCCCCH
Confidence 3455667899988 34455555444433 2 1 234555 554333 4677888754 57999999999999
Q ss_pred HHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 003994 175 GLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 175 e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
.++..+|+.|+|.+|. +--++..+..+++....
T Consensus 190 SdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~ 227 (251)
T d1xm3a_ 190 KDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE 227 (251)
T ss_dssp HHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHHHH
Confidence 9999999999999986 45566666666666543
No 63
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=64.18 E-value=36 Score=29.65 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=64.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-------------------------EE--CC---HHHHHHHHHhcCCCceE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-------------------------EA--TN---GLQAWKILEDLTNHIDL 136 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-------------------------~A--~d---g~eALe~L~~~~~~pDL 136 (780)
+-||.||-..--...++...++..|+++- .. .+ ..++++.+.+ ...+|.
T Consensus 3 G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~-d~~vd~ 81 (163)
T d2csua3 3 GNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ-DPNVDM 81 (163)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH-STTCSE
T ss_pred CCeEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHc-CCCcCE
Confidence 34677777777777777777776666541 11 12 2356665544 256787
Q ss_pred EEEcc-CCC---CCH----HHHHHHHHhhcCCCCccEEEEe--cCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 003994 137 VLTEV-MPC---LSG----VALLSKIMSHKTRKNLPVIMMS--SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 137 VLlDi-MP~---mdG----leLl~~IRs~~~~~~iPIIvLS--a~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
||+-+ ++. ... ..+++.+++. ....||+++. .....+.+..+.+.|+--| -+++.-..++.+++
T Consensus 82 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kpv~~~~~~~~~~~~~~~~l~~~Gip~f----~~pe~a~~Al~~l~ 155 (163)
T d2csua3 82 LIAICVVPTFAGMTLTEHAEGIIRAVKEV--NNEKPVLAMFMAGYVSEKAKELLEKNGIPTY----ERPEDVASAAYALV 155 (163)
T ss_dssp EEEEEECCCSTTCCSSHHHHHHHHHHHHH--CCCCCEEEEEECTTTTHHHHHHHHTTTCCEE----SSHHHHHHHHHHHH
T ss_pred EEEeeccCCcccccHHHHHHHHHHHHHHh--cCCCcEEEEECCCCChHHHHHHHHHCCCCcC----CCHHHHHHHHHHHH
Confidence 76544 332 222 2244444432 2345766543 3344444555666775433 26788888888887
Q ss_pred HHh
Q 003994 207 RRC 209 (780)
Q Consensus 207 rr~ 209 (780)
+..
T Consensus 156 ~~~ 158 (163)
T d2csua3 156 EQA 158 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 64
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}
Probab=62.70 E-value=32 Score=33.81 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHH---HHHHHhhcCCCCccEEEEecC
Q 003994 99 TRHVVAALLRNCGYE---VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVAL---LSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~Gye---V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleL---l~~IRs~~~~~~iPIIvLSa~ 171 (780)
++..|+..|...+-. +...-......+++.. ..||.|++|+ -...|--++ ++.++...... ++.|+=...
T Consensus 27 ~r~~l~~~~~~~~~~~~G~~~~~~s~~~~e~~a~--~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~-~~~iVRvp~ 103 (299)
T d1izca_ 27 LRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAA--TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGR-SLVIVRVPK 103 (299)
T ss_dssp HHHHHHHHHHCGGGCEEEEEECSCCHHHHHHHHH--TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTC-SEEEEECCT
T ss_pred HHHHHHHHhhccCCceeeeeccCCCHHHHHHHHc--CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCC-CCeEEeCCC
Confidence 577888777653222 2222233455666665 6799999999 655554444 34443322222 333444456
Q ss_pred CCHHHHHHHHHCCCCeEEeCCCC-HHHHHHHHHHH
Q 003994 172 DSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHV 205 (780)
Q Consensus 172 ~~~e~~~~al~aGAddyL~KP~~-~eeL~~~L~~l 205 (780)
.+...+.++|++||+++|.-=++ .++...++..+
T Consensus 104 ~~~~~I~~~LD~Ga~GIivP~V~s~eea~~~v~~~ 138 (299)
T d1izca_ 104 HDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 138 (299)
T ss_dssp TCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHhCcCeeeccccccHHHHHHHHHhh
Confidence 67888999999999999885554 56666665553
No 65
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=62.19 E-value=5.6 Score=36.30 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=50.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGY----EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy----eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
-.|..||-+......|+.-++.++. ......+..+.+..... ...||||++|- -......+++..|........
T Consensus 67 ~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~-~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~ 145 (183)
T d2ifta1 67 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN-QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKP 145 (183)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS-SCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEE
T ss_pred eeeEEeecccchhhhHhhHHhhhccccccccccccccccccccccc-CCcccEEEechhHhhhhHHHHHHHHHHhCCcCC
Confidence 3799999999999999999998764 23345555444443322 24699999996 333335567777754432222
Q ss_pred ccEEEE
Q 003994 163 LPVIMM 168 (780)
Q Consensus 163 iPIIvL 168 (780)
--+|++
T Consensus 146 ~~liii 151 (183)
T d2ifta1 146 NALIYV 151 (183)
T ss_dssp EEEEEE
T ss_pred CcEEEE
Confidence 234444
No 66
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=61.56 E-value=3.5 Score=38.93 Aligned_cols=30 Identities=7% Similarity=-0.165 Sum_probs=26.2
Q ss_pred CCCCcHHHHHHHHhCCc-EEeccccCCccee
Q 003994 24 RDENAVVGEQQHLVGDD-RLNDSSIAEDVKD 53 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~-I~v~S~~G~GS~f 53 (780)
..++++++.++.+|+|. +.|.|..+.++++
T Consensus 100 GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~ 130 (219)
T d2hkja3 100 GLGVKAAVLYSQMHQDKPIEIETSPVNSKRI 130 (219)
T ss_dssp TTTHHHHHHHHHHHCCCCEEEEEECTTCSEE
T ss_pred CHHHHHHHHHHHHcCCcEEEEEEEecCCCcE
Confidence 45599999999999997 8999999988874
No 67
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}
Probab=58.05 E-value=71 Score=29.47 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=54.6
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------H----HHHHHHHhhcCCCCccEEEEecCCC
Q 003994 107 LRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------V----ALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 107 L~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------l----eLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
+.+.|+.++ ++.+.+++.+... ..+++|.... .+-..| . .+++.+++ ..+++|||.=.+-..
T Consensus 110 ~~~~gl~~ivcvge~~~~~~~~~---~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~--~~~~i~vlygGgV~~ 184 (226)
T d1w0ma_ 110 AKSLGLDVVVCAPDPRTSLAAAA---LGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSR--HFPEVSVITGAGIES 184 (226)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---TCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHH--HCTTSEEEEESSCCS
T ss_pred HHHcCCEEEEecCchHHhhhhhc---cccceeeecchhhccCCCCCChhhhhHhhhhhhhhhc--cCCCceEEEecCcCC
Confidence 445689865 7788888877775 4578888775 432222 1 23344433 246789988777777
Q ss_pred HHHHHHHHHCCCCeEEe
Q 003994 174 MGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~ 190 (780)
......++..|+|++|.
T Consensus 185 ~n~~~~~~~~g~dGvLV 201 (226)
T d1w0ma_ 185 GDDVAAALRLGTRGVLL 201 (226)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHhcCCCCEEEe
Confidence 78888999999999997
No 68
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}
Probab=57.25 E-value=34 Score=30.35 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=57.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCEEEE-EC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 003994 85 LRSLKVLLVENDDSTRHVVAALLRNC--GYEVTE-AT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~~-A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
|+.+||.||.--..-+......|... .++++. ++ +.+.+-.+... ....-+..|+ -+ .|. .
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~--~~~~~~~~~~------~e---ll~-~--- 65 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM--VGNPAVFDSY------EE---LLE-S--- 65 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH--HSSCEEESCH------HH---HHH-S---
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc--ccccceeeee------ec---ccc-c---
Confidence 46788999986555544434555554 256663 33 33334333332 1111223221 12 232 1
Q ss_pred CCccEEEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 003994 161 KNLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 161 ~~iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+++-+|+++... ..+.+..+++.|.+=|+-||+ +.+++..++...
T Consensus 66 ~~id~v~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~ 114 (181)
T d1zh8a1 66 GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS 114 (181)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred cccceeeccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHH
Confidence 233344443332 356788899999999999998 567776655543
No 69
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=57.19 E-value=43 Score=32.10 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C--CCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 003994 98 STRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M--PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M--P~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
.....|......+|.++. .+.+.+|+...+.. ..++|-+.- + ...|--...+.+.. ...++.+|.-++-.
T Consensus 139 ~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~---~a~iIGINnRnL~t~~vd~~~~~~L~~~--ip~~~~~IaESGI~ 213 (247)
T d1a53a_ 139 RELESLLEYARSYGMEPLIEINDENDLDIALRI---GARFIGINSRDLETLEINKENQRKLISM--IPSNVVKVAESGIS 213 (247)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHT---TCSEEEEESBCTTTCCBCHHHHHHHHHH--SCTTSEEEEESCCC
T ss_pred HHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhC---CCCeEeeeccChhhhhhhhhHHHHHHhh--CCCCCeEEEecCCC
Confidence 345556666667898765 89999998877763 467776654 3 33343333333222 23467788889999
Q ss_pred CHHHHHHHHHCCCCeEEeC
Q 003994 173 SMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~K 191 (780)
..+++.++.++|+++||.-
T Consensus 214 t~~dv~~l~~~G~davLIG 232 (247)
T d1a53a_ 214 ERNEIEELRKLGVNAFLIG 232 (247)
T ss_dssp CHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHCCCCEEEEC
Confidence 9999999999999999973
No 70
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=57.15 E-value=6.3 Score=36.13 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----C-CCEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 003994 89 KVLLVENDDSTRHVVAALLRN----C-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~----~-GyeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
.|||=|.+-.....+...+.. . ...| +.+.+.+++.+.+.. .+|+|++|-|. --++.+.++.. .+.
T Consensus 52 ~iLIkdNHi~~~~~~~~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~---g~diImLDN~~---pe~~~~av~~i--~~~ 123 (167)
T d1qapa1 52 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDNFN---TDQMREAVKRV--NGQ 123 (167)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESSCC---HHHHHHHHHTT--CTT
T ss_pred eeEechhhHhhhhhhhhhhHHHhhcCCCceEEEecCcHHHHHHHHhc---CCcEEEecCCC---HHHHHHHHHhc--CCc
Confidence 378777765544334333332 2 2333 589999999998873 68999999742 22344444322 244
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEE
Q 003994 163 LPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+ .|-.|+.-..+.+.+....|+| ||
T Consensus 124 ~-~lEaSGgI~~~ni~~ya~~GVD-~I 148 (167)
T d1qapa1 124 A-RLEVSGNVTAETLREFAETGVD-FI 148 (167)
T ss_dssp C-CEEECCCSCHHHHHHHHHTTCS-EE
T ss_pred e-EEEEeCCCCHHHHHHHHHcCCC-EE
Confidence 4 3557888899999999999986 55
No 71
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}
Probab=56.05 E-value=14 Score=32.53 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=54.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
|||.||.--..-.......|... ++++..+..-.+..+.+.+. ....-++.|+ + ++ |. . ..+ +|
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~----~--~l---l~-~--~iD--~V 66 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR-YRVSATCTDY----R--DV---LQ-Y--GVD--AV 66 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH-TTCCCCCSST----T--GG---GG-G--CCS--EE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cccccccccH----H--Hh---cc-c--ccc--ee
Confidence 57777776554444344455544 55666665555555544431 1111122222 0 11 11 1 123 33
Q ss_pred EEec--CCCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 003994 167 MMSS--LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 167 vLSa--~~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+++. ..-.+.+..++++|..=|+-||+ +.+++..++..+
T Consensus 67 ~I~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a 109 (167)
T d1xeaa1 67 MIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELA 109 (167)
T ss_dssp EECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCCCCcCCHHHHHHHHHHH
Confidence 3333 23355677889999988899998 457777665543
No 72
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}
Probab=53.62 E-value=42 Score=31.66 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcCCCc-eEEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe---
Q 003994 119 NGLQAWKILEDLTNHI-DLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--- 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~p-DLVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~--- 190 (780)
+..+.+..+.+ ..+ .+|++|+ --+ +.| +++++.|+.. ..+|||+-.+-.+.+.+.+++..|+++.+.
T Consensus 152 ~~~~~~~~~~~--~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~---~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsa 226 (253)
T d1thfd_ 152 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASV 226 (253)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred hHHHHHHHHHh--ccCCEEEEEEecccCccCCcccccccccccc---ccceEEEecCCCCHHHHHHHHHCCCCEEEEchH
Confidence 35677777765 333 4899998 433 445 6788888543 468999888888899999999999999875
Q ss_pred ---CCCCHHHHHHHHH
Q 003994 191 ---KPIRKNELKNLWQ 203 (780)
Q Consensus 191 ---KP~~~eeL~~~L~ 203 (780)
.-+++.+|+..+.
T Consensus 227 l~~~~~~~~~~k~~l~ 242 (253)
T d1thfd_ 227 FHFREIDVRELKEYLK 242 (253)
T ss_dssp HHTTCSCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 4566666655443
No 73
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=52.93 E-value=15 Score=30.92 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=55.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
...|.|||.++...+. +...|+.++... .-.+.|+.+.- ...+.||+-.-.+..-+.++..+|+. .+.++|
T Consensus 21 ~~~i~vi~~d~~~~~~----~~~~~~~~i~Gd~~~~~~L~~a~i--~~A~~vi~~~~~d~~n~~~~~~~r~~--~~~~~i 92 (129)
T d2fy8a1 21 GSEVFVLAEDENVRKK----VLRSGANFVHGDPTRVSDLEKANV--RGARAVIVNLESDSETIHCILGIRKI--DESVRI 92 (129)
T ss_dssp GGGEEEEESCTTHHHH----HHHTTCEEEESCTTSHHHHHHTTC--TTCSEEEECCSSHHHHHHHHHHHHHH--CSSSCE
T ss_pred CCCCEEEEcchHHHHH----HHhcCccccccccCCHHHHHHhhh--hcCcEEEEeccchhhhHHHHHHHHHH--CCCceE
Confidence 3357888888776543 345688876532 12355555432 45677776432223345556666543 578888
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEE
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL 189 (780)
|+.+.. .+....+..+|++..+
T Consensus 93 ia~~~~--~~~~~~l~~~G~d~vi 114 (129)
T d2fy8a1 93 IAEAER--YENIEQLRMAGADQVI 114 (129)
T ss_dssp EEECSS--GGGHHHHHHHHCSEEE
T ss_pred EEEEcC--HHHHHHHHHCCCCEEE
Confidence 877754 3455667788998766
No 74
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=52.70 E-value=13 Score=35.33 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHH
Q 003994 100 RHVVAALLRNCGY-EVTEATNGLQAWKILEDL-TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 100 r~~L~~lL~~~Gy-eV~~A~dg~eALe~L~~~-~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~ 176 (780)
...|..+|+.... -|+...+.++++++++.. ...+. ++.+ +..-+.+++++.|++. ++++ +|-.-.--+.+.
T Consensus 7 ~~~i~~~l~~~~iipvl~~~~~~~a~~~~~al~~~Gi~--~iEitl~~p~a~~~i~~l~~~--~p~~-~vGaGTV~~~~~ 81 (216)
T d1mxsa_ 7 AARIDAICEKARILPVITIAREEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLREQ--RPEL-CVGAGTVLDRSM 81 (216)
T ss_dssp HHHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHHH--CTTS-EEEEECCCSHHH
T ss_pred HHHHHHHHHhCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHh--CCCc-ceeeeeeecHHH
Confidence 3445555555443 333455555555544321 02222 3444 5555567777777653 3554 344444556777
Q ss_pred HHHHHHCCCCeEEeCCCCHHHHHHH
Q 003994 177 VFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 177 ~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
+.++.++|| +|++-|..-.+|...
T Consensus 82 ~~~a~~aGa-~FivsP~~~~~v~~~ 105 (216)
T d1mxsa_ 82 FAAVEAAGA-QFVVTPGITEDILEA 105 (216)
T ss_dssp HHHHHHHTC-SSEECSSCCHHHHHH
T ss_pred HHHHHhCCC-CEEECCCCcHHHHHH
Confidence 778888887 566666666555543
No 75
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}
Probab=51.31 E-value=69 Score=29.65 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=62.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEcc-C-----CC---CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCC
Q 003994 115 TEATNGLQAWKILEDLTNHIDLVLTEV-M-----PC---LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 115 ~~A~dg~eALe~L~~~~~~pDLVLlDi-M-----P~---mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGA 185 (780)
..+.+.+++...... .+|.|++-- . |+ ..|.++++.++.. ...+||+++-+- ..+.+.+++..|+
T Consensus 120 ~S~h~~~e~~~a~~~---g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~--~~~~Pv~AiGGI-~~~ni~~l~~~Ga 193 (226)
T d2tpsa_ 120 VSAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ--GISIPIVGIGGI-TIDNAAPVIQAGA 193 (226)
T ss_dssp EEECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT--TCCCCEEEESSC-CTTTSHHHHHTTC
T ss_pred eeccchHHHHHHHhC---cCCeEEEecccccccccccccccccchhHHHHHh--cCCCCEEEecCC-CHHHHHHHHHhCC
Confidence 368888888777664 478888875 3 22 3578888888542 356899999775 4456788999999
Q ss_pred CeEEe-----CCCCHHHHHHHHHHHHHHh
Q 003994 186 VDFLV-----KPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 186 ddyL~-----KP~~~eeL~~~L~~llrr~ 209 (780)
+++-. +--++.+....+...++++
T Consensus 194 ~giAvis~I~~a~dp~~~~~~~~~~~~~~ 222 (226)
T d2tpsa_ 194 DGVSMISAISQAEDPESAARKFREEIQTY 222 (226)
T ss_dssp SEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEhHHhhcCCCHHHHHHHHHHHHHHH
Confidence 98843 4446777666666666654
No 76
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=48.77 E-value=50 Score=29.05 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=55.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEA-T-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A-~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+||.||.--..-+..+..+....+++|+.+ + +.+.+-.............+.+- ++.|-+. +++-+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ll~~---~~iD~ 69 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS---------YESLLED---PEIDA 69 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESS---------HHHHHHC---TTCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCc---------HHHhhhc---cccce
Confidence 577777655444555544443346777733 3 33334333333111122222221 1222111 23334
Q ss_pred EEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 003994 166 IMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 166 IvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
|+++... ..+....|++.|..=|+-||+ +.+++..++..+
T Consensus 70 v~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~ 113 (184)
T d1ydwa1 70 LYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDAC 113 (184)
T ss_dssp EEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHH
T ss_pred eeecccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHH
Confidence 4444433 345678899999998999998 667766665543
No 77
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Probab=48.18 E-value=50 Score=29.79 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCC------CHHHHHHHHHhhcCCCCccEEEE
Q 003994 99 TRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCL------SGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 99 ~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~m------dGleLl~~IRs~~~~~~iPIIvL 168 (780)
..+.++.+.... +..+. .+.+.+++...++. ..|+|.+.. .-.. ..+.+.+ +.. ..++|||+-
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~---Gad~i~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~ipvia~ 189 (230)
T d1yxya1 117 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYTPYSRQEAGPDVALIE-ALC---KAGIAVIAE 189 (230)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSCCSSSCCHHHHH-HHH---HTTCCEEEE
T ss_pred HHHHHHHHHhcCCCceEecCCCCHHHHHHHHhc---CCCEEEeecccccccccccchHHHHHHH-HHh---cCCCeEEEe
Confidence 345555554444 44444 67888888877753 578887653 1111 1123333 322 247999999
Q ss_pred ecCCCHHHHHHHHHCCCCeEEeC
Q 003994 169 SSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~K 191 (780)
.+-.+.+.+.+++.+||+.++.=
T Consensus 190 GGI~t~~d~~~al~~GAd~V~vG 212 (230)
T d1yxya1 190 GKIHSPEEAKKINDLGVAGIVVG 212 (230)
T ss_dssp SCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEC
Confidence 99889999999999999999763
No 78
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=46.87 E-value=77 Score=27.07 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=41.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc------------CCCceEEEEccCCCCCHHHHHHHHHh
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDL------------TNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~------------~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
||.||.- -.+-..+...|.+.||+|..++--.+.++.+.+. -...|+||+-+ |...-.++++.|..
T Consensus 2 kI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav-p~~~~~~vl~~l~~ 79 (165)
T d2f1ka2 2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT-PIQLILPTLEKLIP 79 (165)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS-CHHHHHHHHHHHGG
T ss_pred EEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC-cHhhhhhhhhhhhh
Confidence 4555533 3334445555666677766554434444433221 13478888654 43334567777743
Q ss_pred hcCCCCccEEEEecCCCHHH
Q 003994 157 HKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~ 176 (780)
. ...-.+|+-++......
T Consensus 80 ~--l~~~~iv~~~~s~~~~~ 97 (165)
T d2f1ka2 80 H--LSPTAIVTDVASVKTAI 97 (165)
T ss_dssp G--SCTTCEEEECCSCCHHH
T ss_pred h--cccccceeeccccchHH
Confidence 2 23333554444333333
No 79
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Probab=46.53 E-value=66 Score=28.63 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=50.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc--CC--------CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCC
Q 003994 116 EATNGLQAWKILEDLTNHIDLVLTEV--MP--------CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi--MP--------~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGA 185 (780)
.+.+..+++...+ ...|+|..-. .. ....++++.+++.. ..+|||+-.+-.+.+.+.+++++||
T Consensus 125 ~~~t~~~a~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~iPVia~GGI~t~~d~~~~~~~GA 198 (222)
T d1y0ea_ 125 DIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIAEGNVITPDMYKRVMDLGV 198 (222)
T ss_dssp ECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEEESSCCSHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHH---cCCCeEEEeccCCcccccCccchhhHHHHHHHHHhc---CCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 6778888887765 3578776532 11 11135677777543 4699998888888999999999999
Q ss_pred CeEEeC
Q 003994 186 VDFLVK 191 (780)
Q Consensus 186 ddyL~K 191 (780)
+.++.=
T Consensus 199 dgV~iG 204 (222)
T d1y0ea_ 199 HCSVVG 204 (222)
T ss_dssp SEEEEC
T ss_pred CEEEEc
Confidence 999763
No 80
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=45.99 E-value=24 Score=33.13 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=35.3
Q ss_pred EEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 003994 138 LTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 138 LlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
++.+ |-.-..+++++.|+++ ++++ +|-.-.--+.+.+.++.++||+ |++-|.--.+|...
T Consensus 42 ~iEitl~~~~a~~~I~~l~~~--~p~~-~vGaGTV~~~~~~~~a~~aGa~-FivSP~~~~~v~~~ 102 (212)
T d1vhca_ 42 VAEITFRSEAAADAIRLLRAN--RPDF-LIAAGTVLTAEQVVLAKSSGAD-FVVTPGLNPKIVKL 102 (212)
T ss_dssp EEEEETTSTTHHHHHHHHHHH--CTTC-EEEEESCCSHHHHHHHHHHTCS-EEECSSCCHHHHHH
T ss_pred EEEEeCCChhHHHHHHHHHhc--CCCc-eEeeeecccHHHHHHHHhhCCc-EEECCCCCHHHHHH
Confidence 3444 5555667777777643 3443 3444445567777788888874 55556555554443
No 81
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=45.73 E-value=32 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 003994 100 RHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~d---g---~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
...+...+++.||++..+.. . .+.++.+.. ..+|.|++-.+......+++++++. ..+|+|++-.
T Consensus 20 ~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~~--~~~d~ii~~~~~~~~~~~~~~~~~~----~~ipvV~~~~ 90 (271)
T d2dria_ 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSDAVGNAVKMANQ----ANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTT--TTEEEEEECCSSTTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--cCCcccccccccccchHHHHHHHhh----cceeEEEecc
Confidence 34555667788999876542 2 234444433 5689888754333333567777754 3588888854
No 82
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=45.42 E-value=36 Score=31.78 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=61.3
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----cCCCceEEEEcc--CCCCC--HHHHHHH
Q 003994 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATNGLQAWKILED-----LTNHIDLVLTEV--MPCLS--GVALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~-----~~~~pDLVLlDi--MP~md--GleLl~~ 153 (780)
.+.+|+||--|. .-.+.|+.+-+..|..+..+.++.+....+.+ ....+|+||+|. ....+ -++-+++
T Consensus 36 ~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~ 115 (211)
T d2qy9a2 36 QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKK 115 (211)
T ss_dssp TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHH
T ss_pred CCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHH
Confidence 456788886553 23455666667778888887776554443321 014689999997 21111 1222233
Q ss_pred HHhhc-----CCCCccEEEEecCCCHHHHHHHH----HCCCCeEEeCCC
Q 003994 154 IMSHK-----TRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVKPI 193 (780)
Q Consensus 154 IRs~~-----~~~~iPIIvLSa~~~~e~~~~al----~aGAddyL~KP~ 193 (780)
|.+.- ..+.-+++++.+....+...++. ..|++.+|.--+
T Consensus 116 l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lIlTKl 164 (211)
T d2qy9a2 116 IVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKL 164 (211)
T ss_dssp HHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCceEEEeec
Confidence 32111 12455678888877665544432 468888765333
No 83
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=43.57 E-value=41 Score=31.56 Aligned_cols=54 Identities=9% Similarity=0.215 Sum_probs=44.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEcc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~---~~~pDLVLlDi 141 (780)
-+|..+|-++......+..+++.|+ .|. ...+..+.|..+... ...||+||+|.
T Consensus 85 g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa 144 (227)
T d1susa1 85 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA 144 (227)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECS
T ss_pred cEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEecc
Confidence 3899999999999999999999987 244 678888888877431 24699999998
No 84
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=43.57 E-value=1e+02 Score=26.84 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=65.8
Q ss_pred CccEEEEEeC-CHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 003994 86 RSLKVLLVEN-DDSTRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDD-D~~~r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
..++++|+.+ ++.....+..+....+-.+.. ..+.++...++. ..|++|+=.+.+.-|..+++.+. ..
T Consensus 65 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~di~v~ps~~e~~~~~~~Eam~-----~G 135 (196)
T d2bfwa1 65 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG----SVDFVIIPSYFEPFGLVALEAMC-----LG 135 (196)
T ss_dssp GGEEEEEECCBCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHT----TCSEEEECCSCCSSCHHHHHHHH-----TT
T ss_pred CCeEEEEEeecccchhhhhhhhhhccceeEEeeeccccccchhccc----cccccccccccccccccchhhhh-----cC
Confidence 3567888865 444444455554455444332 334555666664 36877763344455777888873 35
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 003994 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+|||+ +.. ....+.+. +..+|+..|-+.++|...|..++.
T Consensus 136 ~pvI~-~~~---~~~~e~i~-~~~g~~~~~~~~~~l~~~i~~~l~ 175 (196)
T d2bfwa1 136 AIPIA-SAV---GGLRDIIT-NETGILVKAGDPGELANAILKALE 175 (196)
T ss_dssp CEEEE-ESC---HHHHHHCC-TTTCEEECTTCHHHHHHHHHHHHH
T ss_pred ceeee-cCC---Cccceeec-CCceeeECCCCHHHHHHHHHHHHh
Confidence 67765 322 22334443 457899999999999999988765
No 85
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=43.57 E-value=54 Score=30.25 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=57.9
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCHHH---H----HHHHHhcCCCceEEEEcc--CCCCCHH--HHH
Q 003994 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATNGLQ---A----WKILEDLTNHIDLVLTEV--MPCLSGV--ALL 151 (780)
Q Consensus 86 ~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~dg~e---A----Le~L~~~~~~pDLVLlDi--MP~mdGl--eLl 151 (780)
++.+|+||.-|. ...+.|+.+-+..+..+..+.+..+ + ..+.+. ..+|+||+|. +...+.. +-+
T Consensus 37 ~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vlIDTaGr~~~d~~~~~el 114 (207)
T d1ls1a2 37 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDTAGRLQIDEPLMGEL 114 (207)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--HTCCEEEEECCCCSSCCHHHHHHH
T ss_pred CCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhh--ccCcceeecccccchhhhhhHHHH
Confidence 456788887663 3345566666666888877655433 2 222222 4689999998 5545442 222
Q ss_pred HHHHhhcCCCCccEEEEecCCCHHHHHHH---HH-CCCCeEEeC
Q 003994 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFKC---LS-KGAVDFLVK 191 (780)
Q Consensus 152 ~~IRs~~~~~~iPIIvLSa~~~~e~~~~a---l~-aGAddyL~K 191 (780)
..|... ..++-.++++.+....+....+ ++ .+++.+|.=
T Consensus 115 ~~~~~~-~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~T 157 (207)
T d1ls1a2 115 ARLKEV-LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLT 157 (207)
T ss_dssp HHHHHH-HCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHhh-cCCceEEEEeccccchhHHHHHHHHHhhCCCCeeEEe
Confidence 333221 2344556667665554443333 33 788887653
No 86
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}
Probab=43.02 E-value=28 Score=28.97 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=52.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCCH-HHHHHHHHhhcCCCCc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLSG-VALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~d-g~eALe~L~~~~~~pDLVLlDiMP~mdG-leLl~~IRs~~~~~~i 163 (780)
.+..|+|||.|+...+.+ ...|+.++...- -.+.|+.+.- ...|+||+-+ ++.+. .-++..+++. .+..
T Consensus 22 ~g~~vvvid~d~~~~~~~----~~~~~~~~~gd~~~~~~l~~a~i--~~a~~vi~~~-~~~~~~~~~~~~~~~~--~~~~ 92 (134)
T d2hmva1 22 MGHEVLAVDINEEKVNAY----ASYATHAVIANATEENELLSLGI--RNFEYVIVAI-GANIQASTLTTLLLKE--LDIP 92 (134)
T ss_dssp TTCCCEEEESCHHHHHHT----TTTCSEEEECCTTCTTHHHHHTG--GGCSEEEECC-CSCHHHHHHHHHHHHH--TTCS
T ss_pred CCCeEEEecCcHHHHHHH----HHhCCcceeeecccchhhhccCC--ccccEEEEEc-CchHHhHHHHHHHHHH--cCCC
Confidence 456799999998776554 456777764321 1234554432 3467777653 43333 3344444432 3444
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEE
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.||+.+. +......+..+|++..+
T Consensus 93 ~iiar~~--~~~~~~~l~~~Gad~vi 116 (134)
T d2hmva1 93 NIWVKAQ--NYYHHKVLEKIGADRII 116 (134)
T ss_dssp EEEEECC--SHHHHHHHHHHTCSEEE
T ss_pred cEEeecc--cHhHHHHHHHCCCCEEE
Confidence 5555544 34556667789997554
No 87
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=42.20 E-value=88 Score=25.81 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=50.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+..|+|||.|+...+.+.. ..++.++... .-.+.|+.+.- ...|+++.=.-.+..-+-++..++. ..+. .
T Consensus 22 ~g~~v~vid~d~~~~~~~~~---~~~~~vi~Gd~~~~~~l~~~~i--~~a~~vv~~t~~d~~N~~~~~~~k~--~~~~-~ 93 (132)
T d1lssa_ 22 KGHDIVLIDIDKDICKKASA---EIDALVINGDCTKIKTLEDAGI--EDADMYIAVTGKEEVNLMSSLLAKS--YGIN-K 93 (132)
T ss_dssp TTCEEEEEESCHHHHHHHHH---HCSSEEEESCTTSHHHHHHTTT--TTCSEEEECCSCHHHHHHHHHHHHH--TTCC-C
T ss_pred CCCCcceecCChhhhhhhhh---hhhhhhccCcccchhhhhhcCh--hhhhhhcccCCcHHHHHHHHHHHHH--cCCc-e
Confidence 45679999999876655443 3466665422 23445555532 4567666522111112323333333 2222 5
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEE
Q 003994 165 VIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+|+.... .+....+.++|++..+
T Consensus 94 iI~~~~~--~~~~~~l~~~G~d~vi 116 (132)
T d1lssa_ 94 TIARISE--IEYKDVFERLGVDVVV 116 (132)
T ss_dssp EEEECSS--TTHHHHHHHTTCSEEE
T ss_pred EEEEecC--HHHHHHHHHCCCCEEE
Confidence 6655443 3456677889997655
No 88
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}
Probab=41.79 E-value=15 Score=34.11 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=36.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-------dg~eALe~L~~~~~~pDLVLl 139 (780)
|||||..-.-.+-..|...|...||+|+... +....-+.+.. ..+|+||-
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~--~~~d~vih 58 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNE--KKPNVVIN 58 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHH--HCCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHH--cCCCEEEe
Confidence 6899999999999999999999999998763 33333344443 35666654
No 89
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=41.68 E-value=1.5e+02 Score=29.66 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=64.0
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCC-----------CCH
Q 003994 87 SLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPC-----------LSG 147 (780)
Q Consensus 87 ~lrVLIVDDD----~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-----------mdG 147 (780)
+..|++||-- ......+..+-+.. ...|+ -+.+.+.|+.+++. -.|.|++.+ -.. ..-
T Consensus 131 gv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~a---GAD~VkVGiG~Gs~ctTr~~tGvG~pq 207 (378)
T d1jr1a1 131 GVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDA---GVDALRVGMGCGSICITQEVLACGRPQ 207 (378)
T ss_dssp TCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCH
T ss_pred ccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHh---CCCEEeeccccccccccccccccCccc
Confidence 4567777632 22333333333332 33333 68899999988875 489999887 321 112
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+..+........+|||.=-+-.....+.+||.+||+..+.
T Consensus 208 ~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMm 250 (378)
T d1jr1a1 208 ATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMM 250 (378)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred chhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeee
Confidence 3333333221123469999999999999999999999999876
No 90
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=40.97 E-value=37 Score=34.28 Aligned_cols=109 Identities=15% Similarity=0.051 Sum_probs=61.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 90 VLLVENDDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|++.+.+......+..+-...+-.|. ..-+..+...++.. .|++++=..-+.-|+-+++.+.. .+|||+
T Consensus 324 ~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aD~~v~PS~~E~fglv~lEAma~-----G~PvVa 394 (477)
T d1rzua_ 324 VVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRFEPCGLTQLYALRY-----GCIPVV 394 (477)
T ss_dssp EEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSCCSSCSHHHHHHHH-----TCEEEE
T ss_pred EEEecCCchHHHHHHHHHhhcCCeEEEEcccChhHHHHHHHh----CccccCCccccCCCHHHHHHHHc-----CCCEEE
Confidence 34444444444444444444443333 22333334334433 47777654335567788888743 467775
Q ss_pred EecCCC-HHH-----HHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 168 MSSLDS-MGL-----VFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 168 LSa~~~-~e~-----~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|.... .+. ....+..+..+|+..|.++++|..+|.+++..
T Consensus 395 -s~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 440 (477)
T d1rzua_ 395 -ARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRY 440 (477)
T ss_dssp -ESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHH
T ss_pred -cCCCCCcceeecCCccccccCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 33221 111 11223456789999999999999999887753
No 91
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=40.34 E-value=97 Score=29.69 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=59.7
Q ss_pred ccEEEEEeCCHHHHH-HHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 003994 87 SLKVLLVENDDSTRH-VVAALLRNCGYEVTEA--TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~-~L~~lL~~~GyeV~~A--~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++|+.+.+.... .+..+-...+-.+... ...++...++. ..|++++=...+.-|.-+++.+. ..+
T Consensus 283 ~~~lvi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~adi~v~~s~~e~~~~~~~Eama-----~G~ 353 (437)
T d2bisa1 283 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG----SVDFVIIPSYFEPFGLVALEAMC-----LGA 353 (437)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHTCTTEEEECSCCCHHHHHHHHT----TCSEEEECCSCCSSCHHHHHHHT-----TTC
T ss_pred cceeeeecccccccccchhhhccccccceeccccCcHHHHHHHHh----hhccccccccccccchHHHHHHH-----CCC
Confidence 456666665443333 3333323333333321 23333444443 35666653344555677777772 457
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|||. |..... .+.++.+ .+|+..|.+.++|.+.|.+++.
T Consensus 354 Pvi~-~~~g~~---~e~i~~~-~G~~~~~~d~~~la~~i~~ll~ 392 (437)
T d2bisa1 354 IPIA-SAVGGL---RDIITNE-TGILVKAGDPGELANAILKALE 392 (437)
T ss_dssp EEEE-ESCTTH---HHHCCTT-TCEEECTTCHHHHHHHHHHHHT
T ss_pred CEEE-eCCCCc---HHhEECC-cEEEECCCCHHHHHHHHHHHHh
Confidence 8774 444332 2334434 5899999999999999988874
No 92
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=39.80 E-value=8.1 Score=35.12 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=41.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc-c-CCCCCH--HHHHHHHHhhcCCCCcc
Q 003994 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-MPCLSG--VALLSKIMSHKTRKNLP 164 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlD-i-MP~mdG--leLl~~IRs~~~~~~iP 164 (780)
.|||||....+-.-|..+|++.|+++....+-.--++.+.. ..+|.|++- - +...+- +.....|.+. ....+|
T Consensus 3 ~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~--~~~~gvilsgGp~~~~~~~~~~~~~~i~~~-~~~~~P 79 (195)
T d1qdlb_ 3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEKREDIGVSLDVIKY-LGKRTP 79 (195)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTSHHHHTTHHHHHHH-HTTTSC
T ss_pred EEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHh--hCCCccccCCCCCccccccccccchhhhhh-hcCCCC
Confidence 48999976665556678899999988766432111222332 235655543 3 221221 1122222221 235689
Q ss_pred EEEEe
Q 003994 165 VIMMS 169 (780)
Q Consensus 165 IIvLS 169 (780)
|+-+.
T Consensus 80 iLGIC 84 (195)
T d1qdlb_ 80 ILGVC 84 (195)
T ss_dssp EEEET
T ss_pred EEEee
Confidence 98775
No 93
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}
Probab=39.79 E-value=39 Score=33.12 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=45.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEcc
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYE-V-TEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye-V-~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
..+|+-||-++...+..+.-++..|+. + ....+..+.++.+......||+||+|.
T Consensus 167 ~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 167 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 347999999999999999999988873 3 367888888887766556899999996
No 94
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=39.63 E-value=90 Score=25.74 Aligned_cols=94 Identities=7% Similarity=0.000 Sum_probs=54.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|+|+|+.-...-+ .|...|...|++|+.++.-.+.++.+... ....+|.-|. .-.++++.+. ....-.++
T Consensus 1 M~IvI~G~G~~G~-~la~~L~~~g~~v~vid~d~~~~~~~~~~-~~~~vi~Gd~----~~~~~l~~~~----i~~a~~vv 70 (132)
T d1lssa_ 1 MYIIIAGIGRVGY-TLAKSLSEKGHDIVLIDIDKDICKKASAE-IDALVINGDC----TKIKTLEDAG----IEDADMYI 70 (132)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSSEEEESCT----TSHHHHHHTT----TTTCSEEE
T ss_pred CEEEEECCCHHHH-HHHHHHHHCCCCcceecCChhhhhhhhhh-hhhhhccCcc----cchhhhhhcC----hhhhhhhc
Confidence 5899999866555 55566778899999888777777777642 2344444343 2345666552 12233444
Q ss_pred EecCCCHHHHH---HHHHCCCCeEEeC
Q 003994 168 MSSLDSMGLVF---KCLSKGAVDFLVK 191 (780)
Q Consensus 168 LSa~~~~e~~~---~al~aGAddyL~K 191 (780)
.+...+...+. .+...|....+.+
T Consensus 71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 71 AVTGKEEVNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred ccCCcHHHHHHHHHHHHHcCCceEEEE
Confidence 43333333222 2346777766654
No 95
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=38.23 E-value=31 Score=32.38 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc--CCC----CCHHHHHHHHHhhcCCCCccEEEEecC
Q 003994 100 RHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPC----LSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi--MP~----mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...|+..||.+.. +..+...++.+.. -.||.|=+|. +-+ .....+++.|........++ +++.+-
T Consensus 134 ~~~~l~~L~~~G~~lalddfG~~~~sl~~L~~--l~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~~~~~-vIaeGV 210 (261)
T d2basa1 134 LYHMLAYYRTYGIKIAVDNIGKESSNLDRIAL--LSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAA-LLYEDI 210 (261)
T ss_dssp HHHHHHHHHTTTCEEEEEEETTTBCCHHHHHH--HCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTCE-EEEECC
T ss_pred HHHHHHHHhhcCceeeecCCccCccchhHHhh--hhhhhhhcccccccccccchhhHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 34445567888998764 5555556666665 4689999995 332 23344555553211112344 557888
Q ss_pred CCHHHHHHHHHCCCCe----EEeCCCC
Q 003994 172 DSMGLVFKCLSKGAVD----FLVKPIR 194 (780)
Q Consensus 172 ~~~e~~~~al~aGAdd----yL~KP~~ 194 (780)
.+.+....+.+.|++. |+.||..
T Consensus 211 E~~~~~~~l~~lg~d~~QG~~~~~P~~ 237 (261)
T d2basa1 211 EANFQLQYAWRNGGRYFQGYYLVSPSE 237 (261)
T ss_dssp CSHHHHHHHHHTTEEEECSTTTCCCBS
T ss_pred CcHHHHHHHHHcCCCEEECCcccccCC
Confidence 8888899999999875 5778844
No 96
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}
Probab=37.52 E-value=38 Score=33.33 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---E-EEECCHHHHHHHHHhcCCCceEEEEcc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYE---V-TEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye---V-~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
..|+-||-++......+.-++..|+. + ....+..+.|+.+......||+||+|-
T Consensus 168 ~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DP 225 (317)
T d2b78a2 168 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 225 (317)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcC
Confidence 36999999999999999998877753 3 367888888888776556899999996
No 97
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=37.34 E-value=43 Score=31.01 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHH
Q 003994 142 MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199 (780)
Q Consensus 142 MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~ 199 (780)
|-.-+.++.++.|+... .+++ +|-.-.-.+.+.+.++.++||+ |++-|....+|.
T Consensus 42 lr~p~a~~~i~~l~~~~-~~~~-~vGaGTV~~~~~~~~a~~aGa~-fivsP~~~~~v~ 96 (202)
T d1wa3a1 42 FTVPDADTVIKELSFLK-EKGA-IIGAGTVTSVEQCRKAVESGAE-FIVSPHLDEEIS 96 (202)
T ss_dssp TTSTTHHHHHHHTHHHH-HTTC-EEEEESCCSHHHHHHHHHHTCS-EEECSSCCHHHH
T ss_pred cCCccHHHHHHHHHHhc-CCCc-EEEecccccHHHHHHHHhhccc-EEeCCCCcHHHH
Confidence 44445566666654321 1222 2333333445666666777764 444444434443
No 98
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=36.56 E-value=42 Score=32.46 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCC------CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 148 VALLSKIMSHKTRKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~------~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+++++.+|+. ...+|||+|+-+. ....+.+|.++|++++|.-.+.++|.... ..+++.
T Consensus 82 ~~~~~~~r~~--~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~-~~~~~~ 145 (267)
T d1qopa_ 82 FEMLAIIREK--HPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPF-RQAALR 145 (267)
T ss_dssp HHHHHHHHHH--CSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHH-HHHHHH
T ss_pred hhhhhhhccc--ccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHH-HHhhhc
Confidence 4566666543 3678999998643 35567889999999999988777665443 333443
No 99
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.07 E-value=25 Score=34.41 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=45.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHH
Q 003994 88 LKVLLVENDDSTRHVVAALLRNC-----GYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-----GyeV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----GleLl~~IR 155 (780)
.+|.+||-|+.+.++.+..|... .-++ +...|+.+.+....+ ..||+||+|+ -|... ..++.+.++
T Consensus 105 ~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~--~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~ 182 (290)
T d1xj5a_ 105 EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE--GSYDAVIVDSSDPIGPAKELFEKPFFQSVA 182 (290)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT--TCEEEEEECCCCTTSGGGGGGSHHHHHHHH
T ss_pred eeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccc--cCccEEEEcCCCCCCcchhhCCHHHHHHHH
Confidence 47999999999999999887431 1233 366777777654432 5799999998 65422 245566664
Q ss_pred h
Q 003994 156 S 156 (780)
Q Consensus 156 s 156 (780)
+
T Consensus 183 ~ 183 (290)
T d1xj5a_ 183 R 183 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=35.94 E-value=44 Score=31.04 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=60.8
Q ss_pred CccEEEEEeCC---HHHHHHHHHHHHhCCCEEEEECCHHH-------HHHHHHhcCCCceEEEEcc--C-CCCCH---HH
Q 003994 86 RSLKVLLVEND---DSTRHVVAALLRNCGYEVTEATNGLQ-------AWKILEDLTNHIDLVLTEV--M-PCLSG---VA 149 (780)
Q Consensus 86 ~~lrVLIVDDD---~~~r~~L~~lL~~~GyeV~~A~dg~e-------ALe~L~~~~~~pDLVLlDi--M-P~mdG---le 149 (780)
++.+|.||--| ..-.+.|+.+-+..|..+..+.+..+ |+..... ..+|+||+|. . |..+- ++
T Consensus 39 ~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~~~--~~~d~IlIDTaGr~~~~~~~~~~~ 116 (211)
T d1j8yf2 39 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDTAGRHGYGEEAALLE 116 (211)
T ss_dssp TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEECCCSCCTTCHHHHHH
T ss_pred CCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHHhhc--cCCceEEEecCCcCccchhhHHHH
Confidence 45678888765 33345566666667888887666544 3333333 5689999997 3 32221 22
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCHHHH---HHHH-HCCCCeE-EeCCCCHHHHHHHHHH
Q 003994 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLV---FKCL-SKGAVDF-LVKPIRKNELKNLWQH 204 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~~~~e~~---~~al-~aGAddy-L~KP~~~eeL~~~L~~ 204 (780)
-+..+... ..+.-.++++++....+.. ...+ ..+.+.+ |+|=-....+-.+|.-
T Consensus 117 el~~~~~~-~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDet~~~G~~l~~ 175 (211)
T d1j8yf2 117 EMKNIYEA-IKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSA 175 (211)
T ss_dssp HHHHHHHH-HCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEECTTSCSCHHHHHHH
T ss_pred HHHHHHhh-cCCceEEEEEecccCcchHHHHhhhhcccCcceEEEecccCCCcccHHHHH
Confidence 23333322 2344456777665543332 2233 4567665 4553333333333333
No 101
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=35.71 E-value=29 Score=33.69 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE------eC-CCCHHHHHHHHHHHHHHh
Q 003994 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL------VK-PIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL------~K-P~~~eeL~~~L~~llrr~ 209 (780)
++.++++++. .+++|||...+-.+.+++.+++.+||+..- .+ |--..++..-|+.++.+.
T Consensus 243 l~~v~~~~~~--~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~ 309 (312)
T d1gtea2 243 LRAVTTIARA--LPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLK 309 (312)
T ss_dssp HHHHHHHHHH--STTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--cCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHHc
Confidence 5677777654 467999999999999999999999999763 45 444677877788877654
No 102
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Probab=35.58 E-value=42 Score=29.18 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCEEE---EECCHHHHHH-HHHh--cCCCceEEEEcc
Q 003994 97 DSTRHVVAALLRNCGYEVT---EATNGLQAWK-ILED--LTNHIDLVLTEV 141 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~---~A~dg~eALe-~L~~--~~~~pDLVLlDi 141 (780)
..+...|..+|++.||+|. .+.|..+++. .++. ....+||||+--
T Consensus 19 D~ngp~L~~~l~~~G~~v~~~~iv~D~~~~i~~~l~~~~~~~~~DlIvTtG 69 (155)
T d1y5ea1 19 DKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNG 69 (155)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred CccHHHHHHHHHhcCCEEEEeeeecchHHHHHHHHHHHHhccCCCEEEEee
Confidence 4577899999999999876 4555555444 4432 135689999864
No 103
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Probab=35.56 E-value=34 Score=34.81 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 121 LQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~m-dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-...|.+ ...|+|++|. --.. .-++++++||.. .+++||| ...-...+.....+++|||.+.+
T Consensus 153 ~~ra~~L~~--aG~D~ivID~AhG~s~~~~~~i~~ik~~--~~~v~vI-aGNV~T~e~a~~L~~~GaD~VkV 219 (388)
T d1eepa_ 153 IERVEELVK--AHVDILVIDSAHGHSTRIIELIKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLKV 219 (388)
T ss_dssp HHHHHHHHH--TTCSEEEECCSCCSSHHHHHHHHHHHHH--CTTCEEE-EEEECSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHh--hccceeeeeccccchHHHHHHHHHHHHH--CCCCcee-eccccCHHHHHHHHhcCCCeeee
Confidence 333344443 4689999998 4333 347899999754 4778764 55666788889999999988764
No 104
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=35.54 E-value=75 Score=29.39 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=57.8
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-----hcCCCceEEEEcc--CCCCCH--HHHHHH
Q 003994 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATNGLQAWKILE-----DLTNHIDLVLTEV--MPCLSG--VALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~-----~~~~~pDLVLlDi--MP~mdG--leLl~~ 153 (780)
++.+|.||--|. --.+.|+.+.+..|..+..+.++.+....+. .....+|+||+|. +...+. ++-+++
T Consensus 38 ~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~ 117 (213)
T d1vmaa2 38 EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRK 117 (213)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHH
T ss_pred CCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHH
Confidence 456787776553 3345566666677888887776543222111 0114689999997 322222 222333
Q ss_pred HHhhc-----CCCCccEEEEecCCCHHHHHHH----HHCCCCeEEeC
Q 003994 154 IMSHK-----TRKNLPVIMMSSLDSMGLVFKC----LSKGAVDFLVK 191 (780)
Q Consensus 154 IRs~~-----~~~~iPIIvLSa~~~~e~~~~a----l~aGAddyL~K 191 (780)
|.... ..+.-.++++.+....+...++ -..+++.+|.-
T Consensus 118 ~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~T 164 (213)
T d1vmaa2 118 VHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILT 164 (213)
T ss_dssp HHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCceEEEe
Confidence 32111 1244467888876655443333 35788887653
No 105
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=34.84 E-value=2.4 Score=39.25 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=43.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc-c-C-CC--CCH-HHHHHHHHhhcCC
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-M-PC--LSG-VALLSKIMSHKTR 160 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlD-i-M-P~--mdG-leLl~~IRs~~~~ 160 (780)
++||||||.-..+-..+.+.|++.|.++..+.+-... ..+ ..+|.||+- - . +. .+- ..+++.+. .
T Consensus 1 m~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d~~~-~~~----~~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~----~ 71 (196)
T d2a9va1 1 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDS-SEL----DGLDGLVLSGGAPNIDEELDKLGSVGKYID----D 71 (196)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCG-GGG----TTCSEEEEEEECSCGGGTGGGHHHHHHHHH----H
T ss_pred CCEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCH-HHH----hcCCcEEEeccccccccccchhhhHHHHHh----h
Confidence 4689999987666677888999999887665432111 112 357877763 2 1 11 111 23334442 2
Q ss_pred CCccEEEEe
Q 003994 161 KNLPVIMMS 169 (780)
Q Consensus 161 ~~iPIIvLS 169 (780)
..+||+-+.
T Consensus 72 ~~~PilGIC 80 (196)
T d2a9va1 72 HNYPILGIC 80 (196)
T ss_dssp CCSCEEEET
T ss_pred cCceEEEee
Confidence 468998775
No 106
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=34.59 E-value=43 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.2
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEE
Q 003994 91 LLVENDDSTRHVVAALLRNCGYEVT 115 (780)
Q Consensus 91 LIVDDD~~~r~~L~~lL~~~GyeV~ 115 (780)
+++||.+=.+..+..+|.+.|+.+.
T Consensus 8 V~~eNkpG~L~~v~~~~~~~~inI~ 32 (70)
T d2f06a2 8 IFLENKSGRLTEVTEVLAKENINLS 32 (70)
T ss_dssp EEECSSSSHHHHHHHHHHHTTCCEE
T ss_pred EEEeCCCcHHHHHHHHHHHCCCCEE
Confidence 5678999999999999999887654
No 107
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=34.59 E-value=1.1e+02 Score=25.69 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQ-AWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~e-ALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+|.||----.+-..|...|.+.||+|...+.... ..+.+. ...|++++.. |...-.+++..+.... .+.. +
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~---~~~~~v~~~~-~~~~~~~v~~~~~~~~-~~~~-i 82 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESIL---ANADVVIVSV-PINLTLETIERLKPYL-TENM-L 82 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHH---TTCSEEEECS-CGGGHHHHHHHHGGGC-CTTS-E
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhh---hhcccccccc-chhhheeeeecccccc-cCCc-e
Confidence 347999986677888899999999999987764333 222222 3567777665 3334566777774321 2333 4
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEE
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL 189 (780)
|+-++........+..+.-...|+
T Consensus 83 iiD~~Svk~~~~~~~~~~~~~~~v 106 (152)
T d2pv7a2 83 LADLTSVKREPLAKMLEVHTGAVL 106 (152)
T ss_dssp EEECCSCCHHHHHHHHHHCSSEEE
T ss_pred EEEecccCHHHHHHHHHHccCCEE
Confidence 444444444443333333233444
No 108
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=34.47 E-value=32 Score=32.18 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=54.1
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHH
Q 003994 103 VAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 103 L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
+..+.++.+. .+......++..+++.. .|++|+-..-+.-|+-+++.+. ..+|||+. .... ..+.
T Consensus 241 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adv~v~ps~~E~~~~~~~EAma-----~G~PvI~s-~~~g---~~e~ 307 (370)
T d2iw1a1 241 FEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQEAAGIVLLEAIT-----AGLPVLTT-AVCG---YAHY 307 (370)
T ss_dssp HHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSCCSSCHHHHHHHH-----HTCCEEEE-TTST---TTHH
T ss_pred ccccccccccccccccccccccccccccc----ccccccccccccccceeeeccc-----CCeeEEEe-CCCC---hHHH
Confidence 3444444433 34434433455556654 5777754322334677888874 24788754 3322 2234
Q ss_pred HHCCCCeEEe-CCCCHHHHHHHHHHHHH
Q 003994 181 LSKGAVDFLV-KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 181 l~aGAddyL~-KP~~~eeL~~~L~~llr 207 (780)
+..|..++|. .|.+.++|..+|.+++.
T Consensus 308 i~~~~~G~l~~~~~d~~~la~~i~~ll~ 335 (370)
T d2iw1a1 308 IADANCGTVIAEPFSQEQLNEVLRKALT 335 (370)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred hcCCCceEEEcCCCCHHHHHHHHHHHHc
Confidence 4556677655 78999999999999875
No 109
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Probab=34.29 E-value=57 Score=30.45 Aligned_cols=35 Identities=11% Similarity=-0.115 Sum_probs=15.5
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHH
Q 003994 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~ 203 (780)
+|...+.+.+..|.+.+. .|++==+++.|+..+++
T Consensus 92 vSP~~~~~v~~~a~~~~i-~~iPGv~TpsEi~~A~~ 126 (213)
T d1wbha1 92 ISPGLTEPLLKAATEGTI-PLIPGISTVSELMLGMD 126 (213)
T ss_dssp EESSCCHHHHHHHHHSSS-CEEEEESSHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHhcCC-CccCCcCCHHHHHHHHH
Confidence 344444444444444442 34444444555444433
No 110
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}
Probab=34.27 E-value=56 Score=32.34 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=62.2
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C--------------C
Q 003994 86 RSLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M--------------P 143 (780)
Q Consensus 86 ~~lrVLIVDDD----~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-M--------------P 143 (780)
.+..+++||-- ......++.+-... ...|+ -+.+.+.|..+++. -.|.|.+.+ - |
T Consensus 109 agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~---GaD~v~VGig~Gs~ctt~~~~G~g~p 185 (330)
T d1vrda1 109 AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVP 185 (330)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCC
T ss_pred CCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHc---CCCEEeeccccCccccccceeccccc
Confidence 35678888742 22333333222222 22233 57888888887764 579998865 2 2
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 144 ~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
....+-.+...+. ...+|||.=-+-.+...+.+||.+||+....
T Consensus 186 ~~sai~~~~~~~~---~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~ 229 (330)
T d1vrda1 186 QLTAVMECSEVAR---KYDVPIIADGGIRYSGDIVKALAAGAESVMV 229 (330)
T ss_dssp HHHHHHHHHHHHH---TTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cchhHHHHHHHHH---hcCceEEecCCcccCCchheeeeccCceeee
Confidence 2222223333322 3479999999999999999999999998875
No 111
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}
Probab=33.43 E-value=12 Score=33.16 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=33.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
|||||||=-.-+...+...|+..|+.+..+.+.++ + ..+|.+|+
T Consensus 1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~~~----i----~~~d~lIl 44 (195)
T d1ka9h_ 1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKA----H----EEADLLVL 44 (195)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTS----C----SSCSEEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCHHH----H----HHHhhhhc
Confidence 58999997666777899999999999998876432 1 34676664
No 112
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.19 E-value=82 Score=30.64 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=44.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEcc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+|+-||-++...+..+.-++..|+ .+ ....|..+.+..+......||+||+|.
T Consensus 169 ~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~Dp 225 (324)
T d2as0a2 169 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 225 (324)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCC
Confidence 3799999999999999999998887 23 367888888887765556899999997
No 113
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=33.00 E-value=1.3e+02 Score=25.24 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred CccEEEEEeC---CHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 003994 86 RSLKVLLVEN---DDSTRHVVAALLRNC---GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 86 ~~lrVLIVDD---D~~~r~~L~~lL~~~---GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
+..+++||.+ .+... .+...+... .+.+.-.-+.++..+++.. .|++|+=...+.-++.+++.+.
T Consensus 38 ~~~~l~ivg~~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~i~ps~~e~~~~~~~Ea~~---- 108 (166)
T d2f9fa1 38 QDEKLYIVGWFSKGDHAE-RYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAKDEDFGLTPIEAMA---- 108 (166)
T ss_dssp TTSCEEEEBCCCTTSTHH-HHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCSSCCSCHHHHHHHH----
T ss_pred cCCeEEEEEecccccchh-hhhhhhcccccCcEEEeeccccccccccccc----cccccccccccccccccccccc----
Confidence 3455666642 22333 333333332 2233333466777888875 5777763344455777888874
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 003994 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
..+|||+ +.. ....+.+..+..+|+.++ +.++|...|..++..
T Consensus 109 -~g~pvi~-s~~---~~~~e~i~~~~~g~~~~~-d~~~~~~~i~~l~~~ 151 (166)
T d2f9fa1 109 -SGKPVIA-VNE---GGFKETVINEKTGYLVNA-DVNEIIDAMKKVSKN 151 (166)
T ss_dssp -TTCCEEE-ESS---HHHHHHCCBTTTEEEECS-CHHHHHHHHHHHHHC
T ss_pred -cccccee-ecC---CcceeeecCCcccccCCC-CHHHHHHHHHHHHhC
Confidence 3467764 322 234455677888898876 899999999999864
No 114
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=32.15 E-value=1.4e+02 Score=27.71 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=56.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe----
Q 003994 119 NGLQAWKILEDLTNHIDLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV---- 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~---- 190 (780)
+..+.++.+.+. .-=.+|++|+ --+ +.| +++++.|+.. ..+|||+--+-...+.+.++...|+++.+.
T Consensus 154 ~~~~~~~~~~~~-g~~eii~tdI~~dG~~~G~d~~~~~~i~~~---~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l 229 (252)
T d1h5ya_ 154 DAVKWAKEVEEL-GAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLF 229 (252)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred CHHHHHHHHHhc-CCCEEEEEeecccCccCCcCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHH
Confidence 456777766652 1236899998 433 455 7899999754 358999888888889999999999999876
Q ss_pred --CCCCHHHHHHHH
Q 003994 191 --KPIRKNELKNLW 202 (780)
Q Consensus 191 --KP~~~eeL~~~L 202 (780)
+-++..+|+..+
T Consensus 230 ~~~~~~~~~lk~~l 243 (252)
T d1h5ya_ 230 HFRVLSIAQVKRYL 243 (252)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 345556655443
No 115
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=31.91 E-value=43 Score=31.99 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe------CCCCHHHHHHHHHHHHHHhc
Q 003994 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV------KPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~------KP~~~eeL~~~L~~llrr~~ 210 (780)
++++++|++. .++|||...+-.+.+++.+++.+||+.+.. .|+-..+|..-|..++.+..
T Consensus 230 l~~i~~i~~~---~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~~I~~~L~~~m~~~g 295 (311)
T d1ep3a_ 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYR 295 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhh---cceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHHHHHHHHHHHHHHcC
Confidence 6677777643 379999999999999999999999998866 78877888888887777653
No 116
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=31.79 E-value=35 Score=33.72 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=42.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy---eV~-~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
+..|.-||-++......++-++..|+ .+. .+.|..+.|+.+......||+||+|-
T Consensus 154 GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDP 212 (309)
T d2igta1 154 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 212 (309)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECC
Confidence 44799999999999999888876654 343 56788888876655457899999995
No 117
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=30.99 E-value=67 Score=32.15 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=43.0
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 003994 88 LKVLLVENDDS-----TRHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~-----~r~~L~~lL~~~GyeV~~A~d---------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-|||||-|... ..+.+...|++.|+.+..+.. .+++++.++. ..+|+||- .-+.+.+++.+.
T Consensus 35 ~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~--~~~D~IIa--vGGGs~iD~aK~ 110 (398)
T d1vlja_ 35 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKK--EKVEAVLG--VGGGSVVDSAKA 110 (398)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHH--TTCSEEEE--EESHHHHHHHHH
T ss_pred CeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHHHHHhhhccc--ccCceEEe--cCCcchhhHHHH
Confidence 47988876643 246688888888998876532 3556666665 67898764 455556777777
Q ss_pred HH
Q 003994 154 IM 155 (780)
Q Consensus 154 IR 155 (780)
+.
T Consensus 111 ia 112 (398)
T d1vlja_ 111 VA 112 (398)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 118
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}
Probab=30.88 E-value=61 Score=31.01 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhC-CCEEE------EECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccE
Q 003994 95 NDDSTRHVVAALLRNC-GYEVT------EATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 95 DD~~~r~~L~~lL~~~-GyeV~------~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
|.......++.++... ++.|+ .+.+..++|+.|.+ ..++=||+-= -.-.+|++++++|.+. ..-++
T Consensus 97 dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~--lG~~rILTSGg~~~a~~G~~~L~~L~~~---a~~~i 171 (247)
T d1twda_ 97 DGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAE--LGIARVLTSGQKSDALQGLSKIMELIAH---RDAPI 171 (247)
T ss_dssp TSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHH--HTCCEEEECTTSSSTTTTHHHHHHHHTS---SSCCE
T ss_pred CCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHh--cCCCeEeccCCCCchhHHHHHHHHHHHh---cCCcE
Confidence 5555667777777654 67766 36799999999988 4689899875 3457899999999643 23346
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEE
Q 003994 166 IMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL 189 (780)
||..+--..+.+...++.|+..|-
T Consensus 172 Im~GgGI~~~Ni~~l~~~g~~e~H 195 (247)
T d1twda_ 172 IMAGAGVRAENLHHFLDAGVLEVH 195 (247)
T ss_dssp EEEESSCCTTTHHHHHHHTCSEEE
T ss_pred EEecCCCCHHHHHHHHHcCCCEEE
Confidence 666665666666666677888775
No 119
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}
Probab=30.52 E-value=82 Score=29.42 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe----
Q 003994 119 NGLQAWKILEDLTNHIDLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV---- 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~---- 190 (780)
+..+.+..+.+. ..-.+|++|+ --+ +.| +++++.|.+. ..+|||+--+-.+.+.+.++++.|+++.+.
T Consensus 152 ~~~~~~~~~~~~-g~~eii~tdi~~dG~~~G~d~~l~~~i~~~---~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al 227 (251)
T d1ka9f_ 152 HAVEWAVKGVEL-GAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVF 227 (251)
T ss_dssp EHHHHHHHHHHH-TCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred cHHHHHHHHHhc-CCCEEEEEeecccCccCCcchhHHHHHHhh---cceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHH
Confidence 445666666553 2346899998 433 344 7888888644 468999988889999999999999999875
Q ss_pred --CCCCHHHHHHHH
Q 003994 191 --KPIRKNELKNLW 202 (780)
Q Consensus 191 --KP~~~eeL~~~L 202 (780)
.-++..+++..+
T Consensus 228 ~~g~~~~~~~k~~l 241 (251)
T d1ka9f_ 228 HFGEIPIPKLKRYL 241 (251)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 345555554443
No 120
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=30.03 E-value=96 Score=28.44 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=57.4
Q ss_pred CccEEEEEeCC---HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----cCCCceEEEEcc--C-CCCCH-HHHHHH
Q 003994 86 RSLKVLLVEND---DSTRHVVAALLRNCGYEVTEATNGLQAWKILED-----LTNHIDLVLTEV--M-PCLSG-VALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD---~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~-----~~~~pDLVLlDi--M-P~mdG-leLl~~ 153 (780)
.+.+|.||--| ..-.+.|+.+-+..|..+..+.++.+....+.+ ....+|+||+|. . +.... ++-++.
T Consensus 33 ~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~ 112 (207)
T d1okkd2 33 LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKK 112 (207)
T ss_dssp TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHH
T ss_pred CCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHH
Confidence 45578877655 345567777777778888766654443322210 013689999997 3 32221 222222
Q ss_pred HHhh-----cCCCCccEEEEecCCCHHHHHHH---H-HCCCCeEEe
Q 003994 154 IMSH-----KTRKNLPVIMMSSLDSMGLVFKC---L-SKGAVDFLV 190 (780)
Q Consensus 154 IRs~-----~~~~~iPIIvLSa~~~~e~~~~a---l-~aGAddyL~ 190 (780)
+... ...+.-.+++|++....+....+ + ..+++..|.
T Consensus 113 ~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~ 158 (207)
T d1okkd2 113 VKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIV 158 (207)
T ss_dssp HHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCCceEEE
Confidence 2211 12344457778776655443333 2 367777654
No 121
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}
Probab=29.64 E-value=1.8e+02 Score=26.25 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=61.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCce-E-EEEccCCCCCHHHHHHHHHhhcC
Q 003994 85 LRSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EAT-NGLQAWKILEDLTNHID-L-VLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~-dg~eALe~L~~~~~~pD-L-VLlDiMP~mdGleLl~~IRs~~~ 159 (780)
.+.+||-||.--..-+..+...|... +++|+ +++ +.+.+-...+....... + ++.|+ +.|-.
T Consensus 31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~----------~ell~--- 97 (221)
T d1h6da1 31 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF----------DKIAK--- 97 (221)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSG----------GGGGG---
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCch----------hhhcc---
Confidence 36789999987655443343444443 78887 444 44455555444111111 1 11221 11111
Q ss_pred CCCccEEEEecCCC--HHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 003994 160 RKNLPVIMMSSLDS--MGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 160 ~~~iPIIvLSa~~~--~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
.+++-+|+++.... .+.+.++++.|.+=|+-||+ +.+++..++....
T Consensus 98 ~~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~ 148 (221)
T d1h6da1 98 DPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 148 (221)
T ss_dssp CTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred cccceeeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHH
Confidence 13444555544333 47788999999999999997 4677776666543
No 122
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=29.49 E-value=17 Score=36.20 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=37.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 003994 88 LKVLLVENDDSTRHVVAALLRNC--G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~--G---yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP 143 (780)
.+|.+||-|+.+.++.+..|... + -++. ...|+.+.++. ....||+||+|. -|
T Consensus 131 ~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~---~~~~yDvII~D~~dp 190 (312)
T d2b2ca1 131 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 190 (312)
T ss_dssp CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh---CCCCCCEEEEcCCCC
Confidence 48999999999999999887542 1 1333 56677766653 346799999998 55
No 123
>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=29.47 E-value=55 Score=31.39 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=42.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----------CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHH
Q 003994 88 LKVLLVENDDSTRHVVAALLRNC-----------GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVA 149 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-----------GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----Gle 149 (780)
.+|.+||=|+.+.++.+..+... .-+|. ...|+.+.++ + ...||+||+|+ -|... ..+
T Consensus 96 ~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~---~-~~~yDvIi~D~~~~~~~~~~L~t~e 171 (276)
T d1mjfa_ 96 DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---N-NRGFDVIIADSTDPVGPAKVLFSEE 171 (276)
T ss_dssp SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH---H-CCCEEEEEEECCCCC-----TTSHH
T ss_pred ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh---c-cCCCCEEEEeCCCCCCCcccccCHH
Confidence 47899999999999888776321 11233 5667765553 3 36799999998 65322 245
Q ss_pred HHHHHHh
Q 003994 150 LLSKIMS 156 (780)
Q Consensus 150 Ll~~IRs 156 (780)
+.+.+++
T Consensus 172 F~~~~~~ 178 (276)
T d1mjfa_ 172 FYRYVYD 178 (276)
T ss_dssp HHHHHHH
T ss_pred HHHhhHh
Confidence 6666654
No 124
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}
Probab=28.80 E-value=49 Score=33.39 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 121 LQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~m-dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-+..|.+ ...|+|++|+ -... .-.++++.||.. .++++|| .-.-...+....++++|||.+.+
T Consensus 109 ~er~~~l~~--agvd~ivID~A~G~s~~~~~~i~~ik~~--~~~~~iI-aGNV~T~e~a~~L~~aGaD~VkV 175 (365)
T d1zfja1 109 FERAEALFE--AGADAIVIDTAHGHSAGVLRKIAEIRAH--FPNRTLI-AGNIATAEGARALYDAGVDVVKV 175 (365)
T ss_dssp HHHHHHHHH--HTCSEEEECCSCTTCHHHHHHHHHHHHH--CSSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEECCcccccchhHHHHHHHhh--CCCccee-ecccccHHHHHHHHhcCCceEEe
Confidence 343444433 3589999998 4443 346788888754 4778776 45556788889999999998765
No 125
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=28.71 E-value=49 Score=27.28 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=45.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-C---------C------EEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCC-
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNC-G---------Y------EVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS- 146 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-G---------y------eV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~md- 146 (780)
.+.+|||+-.-....+.+...+... + . .+..+ ............-..+|+||+|= +-+.+
T Consensus 32 ~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~ 110 (136)
T d1a1va1 32 QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYS-TYGKFLADGGCSGGAYDIIICDECHSTDATS 110 (136)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEE-EHHHHHHTTGGGGCCCSEEEEETTTCCSHHH
T ss_pred cCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccccccccceEEE-eeeeeccccchhhhcCCEEEEecccccCHHH
Confidence 4568999998887777776666543 1 1 11122 22222222222225689999995 43322
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecC
Q 003994 147 GVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...++.....+...+|.+|+.
T Consensus 111 ~~~~~~~l~~~~~~~~~~~l~~TAT 135 (136)
T d1a1va1 111 ILGIGTVLDQAETAGARLVVLATAT 135 (136)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 2223233322333467788888874
No 126
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}
Probab=28.56 E-value=19 Score=35.47 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=42.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC------CHHHHHHH
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNC--G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL------SGVALLSK 153 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~--G---yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m------dGleLl~~ 153 (780)
..+|.+||-|+.+.++.+..+... + -++. ...|+.+.+ ++....||+||+|. -|.. -..++.+.
T Consensus 113 ~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~ 189 (295)
T d1inla_ 113 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV---RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQA 189 (295)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG---GGCSSCEEEEEEEC----------CCSHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHH---hcCCCCCCEEEEcCCCCCcCchhhhccHHHHHH
Confidence 347999999999999988877532 1 1232 566766655 44446799999998 5531 12456666
Q ss_pred HHh
Q 003994 154 IMS 156 (780)
Q Consensus 154 IRs 156 (780)
+++
T Consensus 190 ~~~ 192 (295)
T d1inla_ 190 CYD 192 (295)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 127
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}
Probab=28.39 E-value=67 Score=30.08 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=53.0
Q ss_pred EEEEEeCCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 003994 89 KVLLVENDDS----TRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIVDDD~~----~r~~L~~lL~~~GyeV~~A-------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
+|.|+.++.. ....++..++..|++|... .+....+..++. ..+|+||+.. ...+...+++.+++.
T Consensus 140 ~v~i~~~~~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~~d~~~~~~~i~~--~~~d~v~~~~-~~~~~~~~~~~~~~~ 216 (346)
T d1usga_ 140 RIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKK--ENIDFVYYGG-YYPEMGQMLRQARSV 216 (346)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHH--TTCCEEEEES-CHHHHHHHHHHHHHT
T ss_pred eeEEecCchhhhHHHHHHHhhhhhcccceEEEEEecCccccchhhHHHHhhc--cCCCEEEEec-cchhhhheeeccccc
Confidence 4555555433 3455666777788877522 466667777776 6799999865 222456778888654
Q ss_pred cCCCCccEEEEecCCCHHHHHHH
Q 003994 158 KTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
. ...+++.............+
T Consensus 217 g--~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1usga_ 217 G--LKTQFMGPEGVGNASLSNIA 237 (346)
T ss_dssp T--CCCEEEECGGGCCTTHHHHH
T ss_pred c--ccceEEeeeeccCcchhhhh
Confidence 4 34556666555555554443
No 128
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=28.20 E-value=20 Score=34.81 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=43.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHH
Q 003994 88 LKVLLVENDDSTRHVVAALLRNC-----GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-----GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----GleLl~~IR 155 (780)
.+|-+||-|+.+.++.+..+... .-++. ...|+.+.|+ .....||+||+|. -|... ..++.+.++
T Consensus 100 ~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~---~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~ 176 (274)
T d1iy9a_ 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIA 176 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH---TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHH
T ss_pred ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHh---hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHH
Confidence 48999999999999998887431 11333 5567666654 3346799999998 65321 335555554
No 129
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=28.14 E-value=70 Score=27.79 Aligned_cols=68 Identities=9% Similarity=0.089 Sum_probs=40.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE--cc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT--EV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl--Di-MP~mdGleLl~~IRs~~~~~~i 163 (780)
..+||++.|---..+.|..+|+ .+.+ ..+|+||+ |+ -.+....++...++... ...+
T Consensus 5 ~~~i~~~sd~hg~~eale~~~~-----------------~~~~--~~~D~vv~~GDl~~~~~~~~~~~~~~~~L~-~~~~ 64 (228)
T d1uf3a_ 5 VRYILATSNPMGDLEALEKFVK-----------------LAPD--TGADAIALIGNLMPKAAKSRDYAAFFRILS-EAHL 64 (228)
T ss_dssp CCEEEEEECCTTCHHHHHHHHT-----------------HHHH--HTCSEEEEESCSSCTTCCHHHHHHHHHHHG-GGCS
T ss_pred ccEEEEEeCCCCCHHHHHHHHH-----------------HHhh--cCCCEEEECCCCCCCCccchHHHHhhhhhc-cccc
Confidence 3479999998777777766654 2233 35787776 44 23344444433332221 2358
Q ss_pred cEEEEecCCCH
Q 003994 164 PVIMMSSLDSM 174 (780)
Q Consensus 164 PIIvLSa~~~~ 174 (780)
|++++.++.+.
T Consensus 65 pv~~i~GNHD~ 75 (228)
T d1uf3a_ 65 PTAYVPGPQDA 75 (228)
T ss_dssp CEEEECCTTSC
T ss_pred eEEEEecCCCc
Confidence 99999998774
No 130
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=27.66 E-value=60 Score=32.04 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHH
Q 003994 87 SLKVLLVENDDS-----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLS 152 (780)
Q Consensus 87 ~lrVLIVDDD~~-----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~ 152 (780)
+.|+|||-|+.. ..+.+...|+..|+.+..+. +.+++++.++. ..+|+||- +-+.+-+++.+
T Consensus 28 g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGs~iD~aK 103 (359)
T d1o2da_ 28 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRN--DSFDFVVG--LGGGSPMDFAK 103 (359)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTT--SCCSEEEE--EESHHHHHHHH
T ss_pred CCeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHhhhhccc--cCCceEEe--cccccchhHHH
Confidence 357777766533 34678888988888765432 34556666655 67898764 45656677777
Q ss_pred HHH
Q 003994 153 KIM 155 (780)
Q Consensus 153 ~IR 155 (780)
.+.
T Consensus 104 ~ia 106 (359)
T d1o2da_ 104 AVA 106 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 131
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}
Probab=27.54 E-value=1.7e+02 Score=27.70 Aligned_cols=100 Identities=9% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCC--CCHHHHHHHHHhhcCCCCccEEEEecCCC
Q 003994 99 TRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPC--LSGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~--mdGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
....|..+...+|.++. .+.+.+|+-..+.. ..+++|=+.. +-. .| ++....|... ...+..+|.-|+-..
T Consensus 138 ~l~~l~~~a~~lgle~LvEvh~~~El~~al~~--~~a~iiGINnRdL~t~~vd-~~~~~~L~~~-ip~~~~~IaESGI~~ 213 (251)
T d1i4na_ 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFSV--IRPKIIGINTRDLDTFEIK-KNVLWELLPL-VPDDTVVVAESGIKD 213 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT--CCCSEEEEECBCTTTCCBC-TTHHHHHGGG-SCTTSEEEEESCCCC
T ss_pred HHHHHHHHHHHhCCeeecccCCHHHHHHHhcc--cccceeeeeecchhccchh-hhHHHHHHhh-CCCCCEEEEcCCCCC
Confidence 34555556667899876 89999998877754 3467775543 322 22 2233334222 234566777777777
Q ss_pred HHHHHHHHHCCCCeEEeC-----CCCHHHHHHHHH
Q 003994 174 MGLVFKCLSKGAVDFLVK-----PIRKNELKNLWQ 203 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~K-----P~~~eeL~~~L~ 203 (780)
.+.+.. ++.|++.||+- --++.++...+.
T Consensus 214 ~~d~~~-l~~G~davLIG~sLm~~~~p~~~l~~l~ 247 (251)
T d1i4na_ 214 PRELKD-LRGKVNAVLVGTSIMKAENPRRFLEEMR 247 (251)
T ss_dssp GGGHHH-HTTTCSEEEECHHHHHCSSHHHHHHHHH
T ss_pred HHHHHH-HHhCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 777654 57899999873 334555444443
No 132
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.54 E-value=29 Score=33.85 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=38.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNC-----GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~-----GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP 143 (780)
..+|.+||=|+.+.++.+..|... .-++. ...|+.+.|+. ....||+||+|. -|
T Consensus 102 ~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---~~~~yDvIi~D~~~p 162 (285)
T d2o07a1 102 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ---NQDAFDVIITDSSDP 162 (285)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT---CSSCEEEEEEECC--
T ss_pred cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc---CCCCCCEEEEcCCCC
Confidence 458999999999999999888531 12333 56777666543 346799999998 54
No 133
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=26.84 E-value=1.1e+02 Score=29.30 Aligned_cols=97 Identities=9% Similarity=-0.005 Sum_probs=63.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-E-E-CCHHHHHHHHHhcCCCceEEEEccCCCCC---------HHHHHHHHHhh
Q 003994 90 VLLVENDDSTRHVVAALLRNCGYEVT-E-A-TNGLQAWKILEDLTNHIDLVLTEVMPCLS---------GVALLSKIMSH 157 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~-~-A-~dg~eALe~L~~~~~~pDLVLlDiMP~md---------GleLl~~IRs~ 157 (780)
|+|+|-.+.....+...+++.|...+ . + .+..+=++.+.+....| |-+=.+.+.. -.+++++||+.
T Consensus 126 liipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gF--iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~ 203 (267)
T d1qopa_ 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGY--TYLLSRSGVTGAENRGALPLHHLIEKLKEY 203 (267)
T ss_dssp EEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSC--EEEESSSSCCCSSSCC--CCHHHHHHHHHT
T ss_pred eeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchh--hhhhcccccCCcccccchhHHHHHHHHhhh
Confidence 67777777777888888888888665 2 2 24444555555433333 3221122222 24678888754
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 003994 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.++||++==+-.+.+.+.++++.|||+.++-
T Consensus 204 ---t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 234 (267)
T d1qopa_ 204 ---HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (267)
T ss_dssp ---TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ---ccCCceeecccCCHHHHHHHHhcCCCEEEEC
Confidence 4789887666777888888999999999975
No 134
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=26.71 E-value=53 Score=29.17 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=33.6
Q ss_pred EEEEeC-----CHHHHHHHHHHHHhCCCEEE---EECCHHHHH-HHHHh--cCCCceEEEEc
Q 003994 90 VLLVEN-----DDSTRHVVAALLRNCGYEVT---EATNGLQAW-KILED--LTNHIDLVLTE 140 (780)
Q Consensus 90 VLIVDD-----D~~~r~~L~~lL~~~GyeV~---~A~dg~eAL-e~L~~--~~~~pDLVLlD 140 (780)
||.|.| ...+...|..+|++.|++|+ .+.|..+.+ +.+.. ....+||||+-
T Consensus 13 iitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~~~~dlIiTt 74 (170)
T d1mkza_ 13 ILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 74 (170)
T ss_dssp EEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred EEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCCHHHHHHHHHhhhhcccceEEEEe
Confidence 555545 24678899999999999876 455544443 33321 23578999983
No 135
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Probab=26.52 E-value=3e+02 Score=27.25 Aligned_cols=101 Identities=11% Similarity=0.220 Sum_probs=65.3
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCCC------------CH
Q 003994 87 SLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCL------------SG 147 (780)
Q Consensus 87 ~lrVLIVDDD----~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~m------------dG 147 (780)
+..+|+||-- ..+.+.++.+-... ...|+ -+.+.+.|+++++. ..|.|.+.+-|+- .-
T Consensus 163 G~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~---GaD~VkVGiGpGs~CtTr~~~GvG~pq 239 (388)
T d1eepa_ 163 HVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQ 239 (388)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCCCCH
T ss_pred ccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhc---CCCeeeeccccccccccccccccCcch
Confidence 4568888744 22334444433333 34444 58899999998864 4899998874431 11
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+...........+|||.=-+-....++.+||.+||+..+.
T Consensus 240 ~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMl 282 (388)
T d1eepa_ 240 ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 282 (388)
T ss_dssp HHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeec
Confidence 1222222112223579999999999999999999999998875
No 136
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=26.17 E-value=57 Score=30.16 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-----CEEEEECCHHHH----HHHHHhcCCCceEEEEcc-CCCCC--HHHHHH
Q 003994 85 LRSLKVLLVENDDSTRHVVAALLRNCG-----YEVTEATNGLQA----WKILEDLTNHIDLVLTEV-MPCLS--GVALLS 152 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~G-----yeV~~A~dg~eA----Le~L~~~~~~pDLVLlDi-MP~md--GleLl~ 152 (780)
++...++++||-...+.+|..+=-... +....-.+..+. +..+.. ...=++++|. +|... |.++++
T Consensus 28 l~~~d~i~~Edtr~~~~lL~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--g~~v~lvsDaG~P~IsDPG~~lV~ 105 (233)
T d1wyza1 28 IRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAG--GASMGVISEAGCPAVADPGADVVA 105 (233)
T ss_dssp HTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHHHT--TCCEEEECC-------CHHHHHHH
T ss_pred HHhCCEEEEEeCHHHHHHHHHcCCccccchhhhhhhhhhhhHHHhHHHHHHHhc--CCeEEEEeccccccccchhhhhhh
Confidence 355678999997776666655411111 221122233333 333433 2333556689 99875 899999
Q ss_pred HHHhhcCCCCccEEEEecCCCHHH
Q 003994 153 KIMSHKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~~~e~ 176 (780)
.+++ ..++|.++-+....-.
T Consensus 106 ~~~~----~gi~v~iiPG~SA~~a 125 (233)
T d1wyza1 106 IAQR----QKLKVIPLVGPSSIIL 125 (233)
T ss_dssp HHHH----TTCCEEECCCCCHHHH
T ss_pred hhhc----ccccccccccCcchhe
Confidence 9965 3578888877654433
No 137
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Probab=25.78 E-value=74 Score=26.67 Aligned_cols=102 Identities=7% Similarity=-0.006 Sum_probs=60.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH--HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 003994 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG--LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg--~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
||||+.+..+.-...+..+++..+++|...... ++.++.+ ..+|.|++-.-... .-+++..+.. ..+.+
T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~d~ii~~~~~~~-~~~vl~~l~~----~~Lk~ 71 (131)
T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWA----KGFDGINSLQTTPY-AAGVFEKMHA----YGIKF 71 (131)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGG----TTCSEEEECCSSCB-CHHHHHHHHH----TTCCE
T ss_pred CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHh----cCCCEEEEecCCCC-CHHHHhhccc----CCeEE
Confidence 578988777777778888888889998866543 3444433 35887776331122 2456666632 34667
Q ss_pred EEEecCC-CHHHHHHHHHCCCCeEEeCCCCHHHH
Q 003994 166 IMMSSLD-SMGLVFKCLSKGAVDFLVKPIRKNEL 198 (780)
Q Consensus 166 IvLSa~~-~~e~~~~al~aGAddyL~KP~~~eeL 198 (780)
|...+-. +.-++..|.+.|+.=.-+.-+.....
T Consensus 72 I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aV 105 (131)
T d1dxya2 72 LTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAV 105 (131)
T ss_dssp EEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHH
T ss_pred EEEcccccccccccccccceEEEEeCCCCCchhH
Confidence 7764322 22345677788875443333444443
No 138
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=25.38 E-value=59 Score=27.57 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=22.1
Q ss_pred CCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCC
Q 003994 132 NHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 132 ~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
..++++|+|- -+. ....++...|++.-.....+||+++...
T Consensus 98 ~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~ 140 (178)
T d1ye8a1 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIR 140 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSS
T ss_pred cCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccH
Confidence 6789999996 222 2234444444433223456666655443
No 139
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=25.08 E-value=58 Score=27.79 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=52.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT----NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~----dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
..++|||.|.-.. .....|+..|+.++... +.++.++.+. .+|+|++-.....+. +++.. .+
T Consensus 3 ~kmKILv~d~i~~---~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~----~~d~ii~~~~~~i~~-~~i~~------~p 68 (132)
T d1sc6a2 3 DKIKFLLVEGVHQ---KALESLRAAGYTNIEFHKGALDDEQLKESIR----DAHFIGLRSRTHLTE-DVINA------AE 68 (132)
T ss_dssp SSCCEEECSCCCH---HHHHHHHHTTCCCEEECSSCCCHHHHHHHTT----SCSEEEECSSCCBCH-HHHHH------CS
T ss_pred CCCEEEEECCCCH---HHHHHHHhCCCEEEEeCCCCCCHHHHHHhhc----CCcEEEEecccccCh-hhhhc------cc
Confidence 3579999987321 23356778887654332 4566666653 588877643222332 34433 25
Q ss_pred CccEEEEecCC-CHHHHHHHHHCCCCeEEe
Q 003994 162 NLPVIMMSSLD-SMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~-~~e~~~~al~aGAddyL~ 190 (780)
++.+|...+-. +.-++..|.+.|+.=.-+
T Consensus 69 ~Lk~I~~~gvG~D~IDl~aa~~~gI~V~nt 98 (132)
T d1sc6a2 69 KLVAIGAFAIGTNQVDLDAAAKRGIPVFNA 98 (132)
T ss_dssp SCCEEEECSSCCTTBCHHHHHHTTCCEECC
T ss_pred cceeEEEecccccccCHHHHHhCCCEEEEC
Confidence 67788775543 233466788888754444
No 140
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.05 E-value=76 Score=29.32 Aligned_cols=91 Identities=12% Similarity=0.180 Sum_probs=60.6
Q ss_pred CcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHHHHHHHH
Q 003994 27 NAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAAL 106 (780)
Q Consensus 27 ~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~l 106 (780)
..+...|+.+++-...+ ++|.+.... ++......+ ..-+|..+|-++......+..
T Consensus 48 g~lL~~L~~~~~~k~vL--EiGt~~GyS-----tl~~a~al~-----------------~~g~i~tie~~~~~~~~A~~~ 103 (219)
T d2avda1 48 AQLLANLARLIQAKKAL--DLGTFTGYS-----ALALALALP-----------------ADGRVVTCEVDAQPPELGRPL 103 (219)
T ss_dssp HHHHHHHHHHTTCCEEE--EECCTTSHH-----HHHHHTTSC-----------------TTCEEEEEESCSHHHHHHHHH
T ss_pred HHHHHHHHHccCCCeEE--EEechhhHH-----HHHHHHhCC-----------------CCceEEEEeechhHHHHHHHH
Confidence 56777788888888666 555433221 111111110 123799999999999999999
Q ss_pred HHhCCC--EEE-EECCHHHHHHHHHhc--CCCceEEEEcc
Q 003994 107 LRNCGY--EVT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (780)
Q Consensus 107 L~~~Gy--eV~-~A~dg~eALe~L~~~--~~~pDLVLlDi 141 (780)
++..|+ .+. ...+..+.+..+... ...||+|++|.
T Consensus 104 ~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~ 143 (219)
T d2avda1 104 WRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDA 143 (219)
T ss_dssp HHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred HHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeC
Confidence 998876 233 567888887655321 24699999997
No 141
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.77 E-value=49 Score=31.65 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 003994 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
-+++++++|+ ..++|+|+|+-... .....+|.++|++++|.--+.++|....
T Consensus 68 ~~~~~~~~r~---~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~ 125 (248)
T d1geqa_ 68 AFWIVKEFRR---HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEF 125 (248)
T ss_dssp HHHHHHHHHT---TCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHH
T ss_pred HHHHHHHHhh---cCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHH
Confidence 3566677754 35799999987543 5667889999999999976666655443
No 142
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=24.67 E-value=43 Score=32.14 Aligned_cols=62 Identities=11% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 003994 125 KILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 125 e~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
..+++ +.||+||+=- -|..-|-.-.+.+-+ ...+|.|+++....... ..+++..-.+||.-|
T Consensus 57 ~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~---~~giP~ivI~D~p~~k~-~d~~~~~gfGYIi~k 119 (282)
T d1u6ka1 57 DIAED--FEPDFIVYGGPNPAAPGPSKAREMLA---DSEYPAVIIGDAPGLKV-KDEMEEQGLGYILVK 119 (282)
T ss_dssp HHHHH--HCCSEEEEECSCTTSHHHHHHHHHHH---TSSSCEEEEEEGGGGGG-HHHHHHTTCEEEEET
T ss_pred HHHHh--cCCCEEEEECCCCCCCCcHHHHHHHH---hcCCCEEEEcCCcchhh-HHHHHhcCCcEEEEe
Confidence 34555 6788888766 677778877777743 25799999998776654 455555445666543
No 143
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=24.52 E-value=54 Score=32.64 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 003994 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~~----r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|+|||-|.... .+.+...|+..|+++.++. +.+++++.+++ ..+|+||- +-+.+-+++.+.|
T Consensus 31 k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~--~~~D~Iia--iGGGS~iD~aK~i 106 (385)
T d1rrma_ 31 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQN--SGADYLIA--IGGGSPQDTCKAI 106 (385)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHH--HTCSEEEE--EESHHHHHHHHHH
T ss_pred CEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhc--cCCCEEEe--cCCCchhhHHHHH
Confidence 489999875432 2446777888898876543 34556666666 57898875 4555566766665
Q ss_pred H
Q 003994 155 M 155 (780)
Q Consensus 155 R 155 (780)
.
T Consensus 107 a 107 (385)
T d1rrma_ 107 G 107 (385)
T ss_dssp H
T ss_pred H
Confidence 4
No 144
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}
Probab=24.21 E-value=1.8e+02 Score=28.36 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=56.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EE---CCHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcC
Q 003994 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EA---TNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKT 159 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~m-dGleLl~~IRs~~~ 159 (780)
..+-||=-.-++.........+++....+. .+ .+..+-++.+-+ ...|+|++|+ -... .-.++++.||..
T Consensus 61 GGlGvi~r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~--agvd~ivId~A~G~~~~~~~~ik~ik~~-- 136 (330)
T d1vrda1 61 GGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVK--AGVDVIVIDTAHGHSRRVIETLEMIKAD-- 136 (330)
T ss_dssp TCEEEECSSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHH--TTCSEEEECCSCCSSHHHHHHHHHHHHH--
T ss_pred CCeEEeecccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHH--CCCCEEEEecCCCCchhHHHHHHHHHHh--
Confidence 344444323334444333344444432222 22 233444444444 4689999998 5433 346788888754
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 003994 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.++++||+= .-...+....++++|||...+
T Consensus 137 ~~~~~viaG-nV~t~~~a~~l~~~GaD~v~V 166 (330)
T d1vrda1 137 YPDLPVVAG-NVATPEGTEALIKAGADAVKV 166 (330)
T ss_dssp CTTSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEee-chhHHHHHHHHHHcCCCEEee
Confidence 467776653 334567778888999988765
No 145
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}
Probab=24.17 E-value=2.3e+02 Score=26.77 Aligned_cols=90 Identities=19% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEccCCC--C--------------------CHHHHH
Q 003994 99 TRHVVAALLRNCGYEVT--EA---TNGLQAWKILEDLTNHIDLVLTEVMPC--L--------------------SGVALL 151 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~--~A---~dg~eALe~L~~~~~~pDLVLlDiMP~--m--------------------dGleLl 151 (780)
..+.++.+...++..+. .+ .+.+.+..+++. ..|.|+++...+ . .-+..+
T Consensus 146 ~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~---GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 222 (329)
T d1p0ka_ 146 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 222 (329)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred hHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhc---CCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHH
Confidence 34555665555554433 24 456666655543 467777754111 1 112223
Q ss_pred HHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-CCC
Q 003994 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPI 193 (780)
Q Consensus 152 ~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-KP~ 193 (780)
..++. ...++|||+-.+-....++.+|+.+||+.+.. .|+
T Consensus 223 ~~~~~--~~~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~ 263 (329)
T d1p0ka_ 223 AEIRS--EFPASTMIASGGLQDALDVAKAIALGASCTGMAGHF 263 (329)
T ss_dssp HHHHH--HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHh--hcCCceEEEcCCcccHHHHHHHHHcCCCchhccHHH
Confidence 33322 23579999999999999999999999999765 444
No 146
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=23.91 E-value=25 Score=32.52 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCEEEEECCHH----HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCC-H
Q 003994 101 HVVAALLRNCGYEVTEATNGL----QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS-M 174 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~A~dg~----eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~-~ 174 (780)
..|+++|+..|++++...+-. ++.+.+ ...|+||+.. .+..=--++++. .+++.+|+..+-.. .
T Consensus 57 lglr~~Le~~GhelV~~sd~~~~~~el~k~l----~DADivI~~pf~~~~lt~e~i~~------ap~LKlI~~~g~G~D~ 126 (186)
T d2naca2 57 LGLRKYLESNGHTLVVTSDKDGPDSVFEREL----VDADVVISQPFWPAYLTPERIAK------AKNLKLALTAGIGSDH 126 (186)
T ss_dssp GGCHHHHHHTTCEEEEESCCSSTTSHHHHHH----TTCSEEEEBTTBCCCBCHHHHHH------CTTCCEEEESSSCCTT
T ss_pred hhHHHHHHHCCCEEEEecCCCCChHHHHhhc----ccCCEEEEecccccccCHHHHhc------CccceEEEEeccCCcc
Confidence 367889999999999776532 344455 4589999985 443222344433 36778888755432 2
Q ss_pred HHHHHHHHCCCCeEEe
Q 003994 175 GLVFKCLSKGAVDFLV 190 (780)
Q Consensus 175 e~~~~al~aGAddyL~ 190 (780)
-++..|.+.|+.=.-.
T Consensus 127 VDl~aa~e~gI~V~n~ 142 (186)
T d2naca2 127 VDLQSAIDRNVTVAEV 142 (186)
T ss_dssp BCHHHHHHTTCEEEEC
T ss_pred ccHHHHHhCCCEEEEC
Confidence 3456777888744333
No 147
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=23.42 E-value=1.5e+02 Score=27.04 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=67.9
Q ss_pred HHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 003994 102 VVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 102 ~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
.+.....+.++.+. -+.+..|++..++. .+|+|=+ .|. .-|...++.|+. .++++|+|.. +--+.+.+.+
T Consensus 94 ~v~~~~~~~~i~~iPGv~TpsEi~~A~~~---G~~~lK~--fPa~~~G~~~lk~l~~--p~p~i~~ipt-GGI~~~n~~~ 165 (202)
T d1wa3a1 94 EISQFCKEKGVFYMPGVMTPTELVKAMKL---GHTILKL--FPGEVVGPQFVKAMKG--PFPNVKFVPT-GGVNLDNVCE 165 (202)
T ss_dssp HHHHHHHHHTCEEECEECSHHHHHHHHHT---TCCEEEE--TTHHHHHHHHHHHHHT--TCTTCEEEEB-SSCCTTTHHH
T ss_pred HHHHHHHhcCCceeCCcCcHHHHHHHHHC---CCCEEEe--cchhhcCHHHHHHHhC--cccCCcEEee-CCCCHHHHHH
Confidence 34444555677766 78899999998874 5677654 332 236788888853 5788998754 4446677888
Q ss_pred HHHCCCCeE-----EeCCCCHHHHHHHHHHHHHHh
Q 003994 180 CLSKGAVDF-----LVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 180 al~aGAddy-----L~KP~~~eeL~~~L~~llrr~ 209 (780)
++++|+..+ |.++ +.+++.+..+++++..
T Consensus 166 ~l~aga~avg~Gs~l~~~-~~~~i~~~a~~~~~~~ 199 (202)
T d1wa3a1 166 WFKAGVLAVGVGSALVKG-TPDEVREKAKAFVEKI 199 (202)
T ss_dssp HHHHTCSCEEECHHHHCS-CHHHHHHHHHHHHHHH
T ss_pred HHHCCCeEEEEchhhcCC-CHHHHHHHHHHHHHHH
Confidence 999998765 3444 6788887777766543
No 148
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.27 E-value=66 Score=29.21 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 003994 100 RHVVAALLRNCGYEVTEAT---NGL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~---dg~---eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...+++.||.+..+. +.+ ++++.+.. ..+|.||+-. +..+. .....+.. ...+|||++-..
T Consensus 19 ~~gi~~~~~~~gy~~~~~~~~~d~~~~~~~~~~l~~--~~vdgiIi~~-~~~~~-~~~~~~~~---~~~iPvV~~~~~ 89 (282)
T d1dbqa_ 19 IEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMC-SEYPE-PLLAMLEE---YRHIPMVVMDWG 89 (282)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEEC-SCCCH-HHHHHHHH---TTTSCEEEEECS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEeeec-ccccc-hhhhhHHh---hcCCCceEEEec
Confidence 4556667778899887653 333 46666665 5688766532 12222 22222211 256899888644
No 149
>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]}
Probab=23.07 E-value=33 Score=33.61 Aligned_cols=74 Identities=20% Similarity=0.061 Sum_probs=50.5
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEcc-CCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 003994 117 ATNGLQAWKILEDLTNHIDLVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 117 A~dg~eALe~L~~~~~~pDLVLlDi-MP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
+-+..+|+++++.. .+++..+.- ++.. ..++++++|+... .+||.+=-..........+++.++.|++.+.
T Consensus 102 ~~s~~~Ai~~~~~l--e~~l~w~EEPv~~~d~~~~~~~l~~lr~~~---~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d 176 (309)
T d1jdfa1 102 AWSLNEAIKIGKYL--KGSLAYAEDPCGAEQGFSGREVMAEFRRAT---GLPTATNMIATDWRQMGHTLSLQSVDIPLAD 176 (309)
T ss_dssp BBCHHHHHHHHHHT--TTTCSCEESCBCCBTTBCHHHHHHHHHHHH---CCCEEESSSSSSHHHHHHHHHHTCCSEEBCC
T ss_pred CCCHHHHHHHHHHH--hhcchhhhhhcccCcchhhHHHHHHhhccc---ccceecCcccchhhhhhhhhhhccceeeecc
Confidence 45789999988763 456666676 5432 4578888887543 4676432234456677889999999999876
Q ss_pred CCH
Q 003994 193 IRK 195 (780)
Q Consensus 193 ~~~ 195 (780)
...
T Consensus 177 ~~~ 179 (309)
T d1jdfa1 177 PHF 179 (309)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 150
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]}
Probab=23.02 E-value=1.1e+02 Score=27.87 Aligned_cols=86 Identities=17% Similarity=0.033 Sum_probs=56.4
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEccC--CCCCHHHHHHHHHhhc--CCCCccEEEEecCCCHHH
Q 003994 103 VAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEVM--PCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 103 L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDiM--P~mdGleLl~~IRs~~--~~~~iPIIvLSa~~~~e~ 176 (780)
....|...|+. ++.+-+..+|+..... ...|=..++.-| -+.||+++++.++..- ...++.|+ ..+......
T Consensus 102 a~~~L~~~Gi~vn~T~vfs~~Qa~~Aa~a-ga~yispyvgR~~d~g~d~~~~~~~~~~~~~~~~~~tkil-~AS~R~~~~ 179 (211)
T d1wx0a1 102 ACKRLSAEGIKVNMTLIFSANQALLAARA-GASYVSPFLGRVDDISWDGGELLREIVEMIQVQDLPVKVI-AASIRHPRH 179 (211)
T ss_dssp HHHHHHHTTCCEEEEEECSHHHHHHHHHT-TCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHTTCSCEEE-EBCCCSHHH
T ss_pred HHHHHhhcCCceeEEEecCHHHHHHHHHc-CCCEEEEeeecchhccccchhHHHHHHHHHHhccccceeE-eeecCCHHH
Confidence 34567778874 5588899999988864 223322222223 5789999888776432 12344444 466677888
Q ss_pred HHHHHHCCCCeEEe
Q 003994 177 VFKCLSKGAVDFLV 190 (780)
Q Consensus 177 ~~~al~aGAddyL~ 190 (780)
+.+++.+|++.+-.
T Consensus 180 ~~~~~~~G~d~vTi 193 (211)
T d1wx0a1 180 VTEAALLGADIATM 193 (211)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 99999999977643
No 151
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.88 E-value=93 Score=29.54 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEccCCCCCH---------HHHHHHHHhh
Q 003994 90 VLLVENDDSTRHVVAALLRNCGYEVT--EAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSG---------VALLSKIMSH 157 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~--~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdG---------leLl~~IRs~ 157 (780)
++|+|....-.+.+...+++.|...+ ++. +..+-++.+......| |-+=.+.+..| .+++++||+.
T Consensus 112 liipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gF--iY~vs~~GvTG~~~~~~~~~~~~v~~vk~~ 189 (248)
T d1geqa_ 112 ILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGF--VYLVSLYGTTGAREEIPKTAYDLLRRAKRI 189 (248)
T ss_dssp EEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSE--EEEECCC-------CCCHHHHHHHHHHHHH
T ss_pred EeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCe--EEEEecccccccchhhhhhHHHHHHHHhhh
Confidence 56666666777788888888888655 222 4455555554423333 33322333322 4577777764
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 003994 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.++||++==+-.+.+.+.++++.|||+.++-
T Consensus 190 ---t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 220 (248)
T d1geqa_ 190 ---CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp ---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ---cccceeeecccCCHHHHHHHHhcCCCEEEEC
Confidence 3689887656667788888999999999985
No 152
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}
Probab=22.67 E-value=32 Score=33.50 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 003994 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
-+++++++|.. ..+|+|+|+-+.. .....+|.++|++++|.--+.++|-...
T Consensus 79 ~~~~~~~~r~~---~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~ 136 (271)
T d1ujpa_ 79 ALELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGL 136 (271)
T ss_dssp HHHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHH
T ss_pred HHHHHHHHhcc---cCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHH
Confidence 35666777643 3689999987543 5568889999999999976666554443
No 153
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}
Probab=22.17 E-value=40 Score=29.86 Aligned_cols=83 Identities=14% Similarity=0.013 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhcCCCceEEEEcc-CC--CCCHHHHHHHHHhhcCCCCccEEEE--ecCCCHHHHHHHHHCCCCeEEeCC
Q 003994 118 TNGLQAWKILEDLTNHIDLVLTEV-MP--CLSGVALLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 118 ~dg~eALe~L~~~~~~pDLVLlDi-MP--~mdGleLl~~IRs~~~~~~iPIIvL--Sa~~~~e~~~~al~aGAddyL~KP 192 (780)
.+.++++++++.... .+-++++ ++ --.|.++++.|++.. +..+++.. ...........+.++||+.+..-+
T Consensus 11 ~~~~~~~~~~~~~~~--~vdiikig~~~~~~~G~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~ 86 (213)
T d1q6oa_ 11 QTMDSAYETTRLIAE--EVDIIEVGTILCVGEGVRAVRDLKALY--PHKIVLADAKIADAGKILSRMCFEANADWVTVIC 86 (213)
T ss_dssp SSHHHHHHHHHHHGG--GCSEEEECHHHHHHHCTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred CCHHHHHHHHHhcCC--CccEEEeCeeccccCCHHHHHHHHHhc--ccccceeEEeeccchHHHHHHHHHcCCCEEEEec
Confidence 567888888876333 3445555 33 224567788886542 44555433 222223344567799999888877
Q ss_pred CC-HHHHHHHHHH
Q 003994 193 IR-KNELKNLWQH 204 (780)
Q Consensus 193 ~~-~eeL~~~L~~ 204 (780)
.. .+.+...+..
T Consensus 87 ~~g~~~~~~~~~~ 99 (213)
T d1q6oa_ 87 CADINTAKGALDV 99 (213)
T ss_dssp TSCHHHHHHHHHH
T ss_pred cCCchHHHHHHHH
Confidence 74 4445444443
No 154
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]}
Probab=22.11 E-value=2.7e+02 Score=25.21 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHH-HHHHHHh-----hcCCCCc
Q 003994 99 TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVA-LLSKIMS-----HKTRKNL 163 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGle-Ll~~IRs-----~~~~~~i 163 (780)
.+..|...|+..|+.|..+. +..++.+.+.. ..+|+|++-- . .+.+ +++.+.. ......+
T Consensus 135 ~~~~L~~~L~~~G~~v~~v~~Y~t~~~~~~~~~l~~~l~~--~~~d~V~ftS--~-s~v~~f~~~~~~~~~~~~~~~~~~ 209 (254)
T d1wd7a_ 135 PLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLR--GEVDALAFVA--A-IQVEFLFEGAKDPKALREALNTRV 209 (254)
T ss_dssp CCHHHHHHHHHTTEEEEEECSEECCBCHHHHHHHHHHHHT--TCCSEEEESS--H-HHHHHHHHHCSCHHHHHHHHHTTS
T ss_pred CcHHHHHHHHhccCcceEEEEeeeeccccChHHHHHHHhc--CCceEEEeCC--H-HHHHHHHHHHhhhhhhHHHhccCC
Confidence 34678889999998776432 23334555554 6789888643 0 1111 1221110 0011345
Q ss_pred cEEEEecCCCHHHHHHHHHCCCC-eEEeCCCCHHHHHHHHHHHHHHh
Q 003994 164 PVIMMSSLDSMGLVFKCLSKGAV-DFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAd-dyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|+.|. +.....+.+.|+. .+..+-.+.+.|...|...+++.
T Consensus 210 ~v~aIG----p~Ta~al~~~G~~~~v~~~~~t~~~lv~al~~~l~~~ 252 (254)
T d1wd7a_ 210 KALAVG----RVTADALREWGVKPFYVDETERLGSLLQGFKRALQKE 252 (254)
T ss_dssp EEEEES----HHHHHHHHHTTCCCSEEETTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEC----HHHHHHHHHcCCCcEEEeCCCCHHHHHHHHHHHHHHh
Confidence 666664 3455667789985 66778899999999999888764
No 155
>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.05 E-value=79 Score=28.93 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=61.7
Q ss_pred CcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHHHHHHHH
Q 003994 27 NAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAAL 106 (780)
Q Consensus 27 ~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~l 106 (780)
..+...|+..+.-...+ ++|.+..... +.+....+ ..-+|+.||-++...+..+..
T Consensus 45 G~lL~~lv~~~kpk~IL--EiGt~~G~St-----i~la~al~-----------------~~g~v~sid~~~~~~~~a~~~ 100 (214)
T d2cl5a1 45 GQIMDAVIREYSPSLVL--ELGAYCGYSA-----VRMARLLQ-----------------PGARLLTMEMNPDYAAITQQM 100 (214)
T ss_dssp HHHHHHHHHHHCCSEEE--EECCTTSHHH-----HHHHTTCC-----------------TTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEE--EEccCchhHH-----HHHHHhCC-----------------CccEEEEEeccHHHHHHHHHH
Confidence 46888899999988777 5554322211 11111110 123799999999999999999
Q ss_pred HHhCCC--EEE-EECCHHHHHHHHHhc--CCCceEEEEcc
Q 003994 107 LRNCGY--EVT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (780)
Q Consensus 107 L~~~Gy--eV~-~A~dg~eALe~L~~~--~~~pDLVLlDi 141 (780)
++..|+ .|. ...+..+.|..+... ...||+|++|.
T Consensus 101 ~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~ 140 (214)
T d2cl5a1 101 LNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDH 140 (214)
T ss_dssp HHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECS
T ss_pred HHHcCCCccceeeeccccccccchhhcccccccceeeecc
Confidence 998886 244 677888887766532 24699999996
No 156
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=21.84 E-value=1.4e+02 Score=26.72 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 003994 99 TRHVVAALLRNCGYEVTEAT---NG---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~---dg---~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
+...+...+.+.||.+..+. +. .++++.+.. ..+|-||+-... .+ -.....+++ ..+||+++-.
T Consensus 21 ~~~gi~~~~~~~g~~~~~~~~~~~~~~e~~~i~~~~~--~~vdgii~~~~~-~~-~~~~~~l~~----~~~pvv~~~~ 90 (275)
T d2nzug1 21 LARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLG--KQVDGIIFMSGN-VT-EEHVEELKK----SPVPVVLAAS 90 (275)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEECCSC-CC-HHHHHHHHH----CSSCEEEESC
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHh--cCCceeeccccc-hh-hHHHHHHhh----cccccccccc
Confidence 44556677888899887553 22 234555544 678888764311 12 223444543 3578877754
No 157
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}
Probab=20.94 E-value=1.5e+02 Score=28.22 Aligned_cols=80 Identities=15% Similarity=0.016 Sum_probs=51.0
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CC--C--CC-HHHHHHHHHhhcCCCCccEEEEecCCCHHH
Q 003994 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MP--C--LS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 105 ~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP--~--md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~ 176 (780)
..-..+|.++. .+.+.+|+-..+.. ..++|=+.- +- . .+ ...+...+... ..++.+|.=|+-...+.
T Consensus 148 ~~A~~lgl~~LVEvh~~~El~~a~~~---~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~--~~~~i~IsESGI~~~~d 222 (254)
T d1vc4a_ 148 EEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKR--GFGGVLVAESGYSRKEE 222 (254)
T ss_dssp HHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHT--TCCSEEEEESCCCSHHH
T ss_pred HHHHHhCCceEEEeccHHHHhhhhcC---CCCEEEEeccchhhhhcchHHHHHhhhccccc--CCCCEEEEccCCCCHHH
Confidence 34456799876 89999998777764 457776642 22 1 12 34455555432 23455677777777777
Q ss_pred HHHHHHCCCCeEEe
Q 003994 177 VFKCLSKGAVDFLV 190 (780)
Q Consensus 177 ~~~al~aGAddyL~ 190 (780)
+ +.++.|++.||.
T Consensus 223 v-~~l~~g~davLI 235 (254)
T d1vc4a_ 223 L-KALEGLFDAVLI 235 (254)
T ss_dssp H-HTTTTTCSEEEE
T ss_pred H-HHHHcCCCEEEE
Confidence 6 456889999975
No 158
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=20.71 E-value=44 Score=30.12 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=46.8
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHH-HHHHhcCCCceEEEEcc-CCCC
Q 003994 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAW-KILEDLTNHIDLVLTEV-MPCL 145 (780)
Q Consensus 83 ~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eAL-e~L~~~~~~pDLVLlDi-MP~m 145 (780)
.++.+.+|+||.....+-.-|..+|...|..|+.+.....-+ +.+++ .|+||.-. -|++
T Consensus 33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~~~----ADivI~a~G~p~~ 93 (166)
T d1b0aa1 33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVEN----ADLLIVAVGKPGF 93 (166)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHH----CSEEEECSCCTTC
T ss_pred cccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHHhh----hhHhhhhccCccc
Confidence 346778999999999999999999999999999887555333 34433 69999988 7765
No 159
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}
Probab=20.38 E-value=79 Score=27.10 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=52.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEE-EC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 003994 88 LKVLLVENDDSTRHVVAALLRNC-GYEVTE-AT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~-A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
+||.||.--..-+......|... +++++. ++ +.+.+...... +.+-+. +.++.+ + . ..+
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~----~~~~~~------~~~~~l--~-~---~~D-- 63 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----WRIPYA------DSLSSL--A-A---SCD-- 63 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----HTCCBC------SSHHHH--H-T---TCS--
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhc----cccccc------ccchhh--h-h---hcc--
Confidence 67888875443333334455543 677763 32 23334444433 211111 222222 1 1 133
Q ss_pred EEEEecCC--CHHHHHHHHHCCCCeEEeCCCC--HHHHHHHHHHH
Q 003994 165 VIMMSSLD--SMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (780)
Q Consensus 165 IIvLSa~~--~~e~~~~al~aGAddyL~KP~~--~eeL~~~L~~l 205 (780)
+|+++... ..+.+..+++.|..=|+-||+. .+++..++..+
T Consensus 64 ~V~I~tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a 108 (164)
T d1tlta1 64 AVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELA 108 (164)
T ss_dssp EEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred cccccccchhccccccccccccceeeccccccCCHHHHHHHHHHH
Confidence 34443333 2466788999999999999985 57777665543
No 160
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}
Probab=20.25 E-value=2e+02 Score=28.53 Aligned_cols=99 Identities=10% Similarity=0.187 Sum_probs=63.6
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC--CCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCC---------------
Q 003994 87 SLKVLLVEN----DDSTRHVVAALLRNC--GYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPC--------------- 144 (780)
Q Consensus 87 ~lrVLIVDD----D~~~r~~L~~lL~~~--GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~--------------- 144 (780)
+..+|+||- .......+..+-... ..-|. -+.+.+.|+.+++. ..|+|.+.+=|+
T Consensus 119 gvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~a---GaD~VkVGiG~Gs~CTTr~~tGvGvPq 195 (365)
T d1zfja1 119 GADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDA---GVDVVKVGIGPGSICTTRVVAGVGVPQ 195 (365)
T ss_dssp TCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTBCHHHHTCCCCCH
T ss_pred CCCEEEEECCcccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhc---CCceEEeeecccccccCcceeeeeccc
Confidence 356788873 344444454443333 12222 68899999998874 589999886221
Q ss_pred CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 003994 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 145 mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.+.+--+...+.. ..+|||.=-+-....++.+||.+||+..+.-
T Consensus 196 ~sai~~~~~~~~~---~~~~iIADGGi~~~GDi~KAla~GAd~VMlG 239 (365)
T d1zfja1 196 VTAIYDAAAVARE---YGKTIIADGGIKYSGDIVKALAAGGNAVMLG 239 (365)
T ss_dssp HHHHHHHHHHHHH---TTCEEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hhHHHHHHHHHHh---CCceEEecCCcCcchhhhhhhhccCCEEEec
Confidence 1122222222222 3589999999999999999999999998864
No 161
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=52 Score=32.10 Aligned_cols=80 Identities=18% Similarity=0.082 Sum_probs=52.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 003994 87 SLKVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye-V~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.-+|+-||-++...+..+.-.+..|.. +. .+.+.++.+.........+|+||+|- -.|++ ++++.|.+.. + -
T Consensus 234 ~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~l~~~~--~-~ 308 (358)
T d1uwva2 234 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA--GVMQQIIKLE--P-I 308 (358)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH--HHHHHHHHHC--C-S
T ss_pred ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCccHH--HHHHHHHHcC--C-C
Confidence 358999999999998888888877763 33 45555555543333335689999998 66764 4677775432 2 2
Q ss_pred cEEEEecC
Q 003994 164 PVIMMSSL 171 (780)
Q Consensus 164 PIIvLSa~ 171 (780)
.||.+|-+
T Consensus 309 ~ivYVSCn 316 (358)
T d1uwva2 309 RIVYVSCN 316 (358)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 35656543
Done!