Query 003996
Match_columns 780
No_of_seqs 418 out of 3799
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 15:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-81 4.2E-86 723.7 48.2 709 35-758 22-848 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.7E-50 5.9E-55 491.5 46.0 524 153-756 182-741 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-42 2.2E-47 365.2 15.3 273 160-435 1-285 (287)
4 PRK04841 transcriptional regul 99.5 1.9E-12 4E-17 158.3 24.7 293 153-482 12-333 (903)
5 PLN03210 Resistant to P. syrin 99.3 7.4E-12 1.6E-16 154.4 13.9 106 646-756 793-910 (1153)
6 PRK00411 cdc6 cell division co 99.3 2.9E-10 6.4E-15 124.8 23.4 286 154-460 29-357 (394)
7 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.5E-14 113.5 22.5 181 173-357 40-242 (269)
8 PLN00113 leucine-rich repeat r 99.2 2.6E-11 5.6E-16 149.2 10.5 224 506-756 70-325 (968)
9 PLN00113 leucine-rich repeat r 99.2 3.9E-11 8.5E-16 147.6 10.4 226 505-756 118-349 (968)
10 PF01637 Arch_ATPase: Archaeal 99.2 4.1E-11 9E-16 121.5 8.9 192 157-352 1-233 (234)
11 COG2909 MalT ATP-dependent tra 99.2 4.2E-10 9.2E-15 125.1 17.1 293 154-483 18-340 (894)
12 TIGR02928 orc1/cdc6 family rep 99.1 1.4E-08 3.1E-13 110.3 26.4 287 155-460 15-349 (365)
13 KOG0444 Cytoskeletal regulator 99.1 7.1E-12 1.5E-16 132.9 -0.4 230 504-758 102-381 (1255)
14 PF05729 NACHT: NACHT domain 99.1 5.7E-10 1.2E-14 106.5 12.2 142 177-323 1-163 (166)
15 KOG0617 Ras suppressor protein 99.1 4.4E-12 9.5E-17 113.5 -3.0 163 517-730 23-189 (264)
16 TIGR00635 ruvB Holliday juncti 99.1 7E-09 1.5E-13 109.6 19.3 262 154-461 3-289 (305)
17 PRK00080 ruvB Holliday junctio 99.0 1.4E-08 3E-13 108.1 20.1 274 151-461 21-310 (328)
18 KOG0444 Cytoskeletal regulator 99.0 1.7E-11 3.8E-16 130.0 -2.9 184 504-699 54-285 (1255)
19 COG3899 Predicted ATPase [Gene 99.0 9.2E-09 2E-13 121.3 19.1 308 156-483 1-388 (849)
20 KOG4194 Membrane glycoprotein 98.8 2.1E-09 4.5E-14 114.0 3.2 120 621-750 288-427 (873)
21 KOG4194 Membrane glycoprotein 98.8 6.3E-09 1.4E-13 110.4 6.0 126 621-756 264-408 (873)
22 PRK06893 DNA replication initi 98.8 8.1E-08 1.8E-12 96.3 12.5 155 175-357 38-207 (229)
23 COG2256 MGS1 ATPase related to 98.7 3E-07 6.4E-12 94.6 15.2 234 153-414 22-277 (436)
24 PRK13342 recombination factor 98.7 1.8E-07 3.8E-12 102.7 14.4 179 153-357 10-200 (413)
25 PTZ00112 origin recognition co 98.7 1.4E-06 3.1E-11 98.4 19.4 204 154-358 754-987 (1164)
26 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.5E-07 5.5E-12 93.1 12.1 170 160-357 22-205 (226)
27 PRK15370 E3 ubiquitin-protein 98.6 1.2E-07 2.5E-12 110.0 9.1 204 503-756 197-404 (754)
28 PRK04195 replication factor C 98.6 3.4E-06 7.4E-11 94.5 20.5 251 151-440 10-277 (482)
29 KOG0618 Serine/threonine phosp 98.6 3.8E-08 8.2E-13 110.3 4.3 203 504-725 240-488 (1081)
30 KOG0472 Leucine-rich repeat pr 98.6 1.2E-08 2.6E-13 103.8 0.2 223 510-750 233-539 (565)
31 PRK12402 replication factor C 98.5 1.2E-06 2.6E-11 94.1 15.1 199 152-352 12-225 (337)
32 PF13173 AAA_14: AAA domain 98.5 1.7E-07 3.6E-12 84.9 7.1 120 176-315 2-127 (128)
33 COG1474 CDC6 Cdc6-related prot 98.5 8.2E-06 1.8E-10 86.9 20.9 200 156-356 18-241 (366)
34 PRK14961 DNA polymerase III su 98.5 2.6E-06 5.7E-11 91.7 17.3 180 152-353 13-220 (363)
35 PRK07003 DNA polymerase III su 98.5 2.4E-06 5.1E-11 96.2 15.9 189 151-357 12-225 (830)
36 PF13401 AAA_22: AAA domain; P 98.5 6E-07 1.3E-11 81.7 9.3 116 175-292 3-125 (131)
37 PRK14949 DNA polymerase III su 98.5 1.6E-06 3.6E-11 99.4 14.2 185 152-354 13-221 (944)
38 PRK05564 DNA polymerase III su 98.5 4.5E-06 9.7E-11 88.2 16.1 175 155-351 4-188 (313)
39 PRK15387 E3 ubiquitin-protein 98.4 1.6E-06 3.5E-11 100.1 13.1 96 627-756 343-438 (788)
40 cd00009 AAA The AAA+ (ATPases 98.4 1.2E-06 2.5E-11 81.5 10.1 123 158-294 1-131 (151)
41 PRK00440 rfc replication facto 98.4 5.8E-06 1.2E-10 88.1 16.2 184 153-354 15-204 (319)
42 PRK14963 DNA polymerase III su 98.4 5.4E-06 1.2E-10 92.2 16.2 181 153-351 12-215 (504)
43 PTZ00202 tuzin; Provisional 98.4 1E-05 2.2E-10 85.0 17.0 165 149-323 256-434 (550)
44 TIGR02903 spore_lon_C ATP-depe 98.4 4.1E-06 8.9E-11 95.9 15.5 202 153-356 152-398 (615)
45 cd01128 rho_factor Transcripti 98.4 8.5E-07 1.8E-11 89.1 8.8 92 175-267 15-115 (249)
46 PRK12323 DNA polymerase III su 98.4 3.8E-06 8.2E-11 93.4 14.3 184 152-353 13-225 (700)
47 PLN03025 replication factor C 98.4 3.9E-06 8.5E-11 88.9 13.9 185 151-351 9-198 (319)
48 PRK14960 DNA polymerase III su 98.4 7.2E-06 1.6E-10 91.4 16.2 184 152-353 12-219 (702)
49 PF14580 LRR_9: Leucine-rich r 98.4 1.6E-07 3.5E-12 88.5 2.4 43 524-570 16-58 (175)
50 PRK06645 DNA polymerase III su 98.4 1.3E-05 2.7E-10 88.9 17.5 182 153-352 19-228 (507)
51 PF05496 RuvB_N: Holliday junc 98.4 2.2E-05 4.8E-10 75.8 16.8 179 151-358 20-226 (233)
52 KOG2028 ATPase related to the 98.3 3.1E-06 6.7E-11 85.4 11.0 172 156-348 139-331 (554)
53 PRK08727 hypothetical protein; 98.3 9E-06 1.9E-10 81.8 13.8 169 155-351 19-202 (233)
54 PRK14957 DNA polymerase III su 98.3 1.5E-05 3.3E-10 88.8 16.9 186 152-355 13-223 (546)
55 PF13191 AAA_16: AAA ATPase do 98.3 1.9E-06 4.1E-11 83.7 8.7 48 156-203 1-51 (185)
56 PRK15370 E3 ubiquitin-protein 98.3 1.2E-06 2.6E-11 101.6 8.3 202 506-757 179-384 (754)
57 COG3903 Predicted ATPase [Gene 98.3 6.7E-07 1.4E-11 92.8 5.3 290 175-482 13-315 (414)
58 PRK07471 DNA polymerase III su 98.3 1.9E-06 4.2E-11 91.9 9.0 196 152-353 16-238 (365)
59 PRK14962 DNA polymerase III su 98.3 1.5E-05 3.3E-10 87.9 16.2 188 152-357 11-223 (472)
60 PRK14956 DNA polymerase III su 98.3 1.5E-05 3.2E-10 86.6 15.5 198 151-352 14-221 (484)
61 PRK09112 DNA polymerase III su 98.3 2E-05 4.3E-10 83.7 16.0 197 151-353 19-240 (351)
62 PRK08084 DNA replication initi 98.3 1.1E-05 2.3E-10 81.4 13.3 167 161-356 30-212 (235)
63 PRK13341 recombination factor 98.3 7.2E-06 1.6E-10 94.8 13.4 175 152-352 25-216 (725)
64 TIGR02397 dnaX_nterm DNA polym 98.3 3.4E-05 7.4E-10 83.5 17.6 184 153-355 12-220 (355)
65 PRK07940 DNA polymerase III su 98.3 2.6E-05 5.7E-10 84.0 16.4 175 155-353 5-213 (394)
66 PRK09376 rho transcription ter 98.2 3E-06 6.6E-11 88.6 8.7 91 175-266 168-267 (416)
67 PRK05896 DNA polymerase III su 98.2 1.5E-05 3.2E-10 88.9 14.7 187 151-355 12-223 (605)
68 TIGR00678 holB DNA polymerase 98.2 2.6E-05 5.6E-10 75.9 14.9 159 166-349 3-187 (188)
69 PRK14951 DNA polymerase III su 98.2 1.9E-05 4.1E-10 89.2 15.7 180 152-353 13-225 (618)
70 PRK14964 DNA polymerase III su 98.2 2.5E-05 5.5E-10 85.8 16.2 182 152-351 10-215 (491)
71 PRK14958 DNA polymerase III su 98.2 1.6E-05 3.5E-10 88.7 14.9 184 151-352 12-219 (509)
72 KOG0472 Leucine-rich repeat pr 98.2 5.4E-08 1.2E-12 99.1 -4.1 73 506-583 115-188 (565)
73 KOG3207 Beta-tubulin folding c 98.2 1.5E-07 3.3E-12 97.2 -1.0 208 504-747 120-334 (505)
74 PRK08691 DNA polymerase III su 98.2 1.7E-05 3.7E-10 89.4 14.9 186 151-354 12-221 (709)
75 TIGR01242 26Sp45 26S proteasom 98.2 3.6E-05 7.7E-10 83.3 16.8 173 153-347 120-328 (364)
76 PRK15387 E3 ubiquitin-protein 98.2 2.5E-06 5.5E-11 98.5 8.2 95 626-750 362-456 (788)
77 PRK07994 DNA polymerase III su 98.2 1.8E-05 3.8E-10 89.7 14.5 185 152-354 13-221 (647)
78 KOG0617 Ras suppressor protein 98.2 2.3E-07 5E-12 83.6 -0.5 74 505-583 33-107 (264)
79 PF14516 AAA_35: AAA-like doma 98.2 0.00014 3E-09 77.2 19.3 200 153-360 9-246 (331)
80 PRK14955 DNA polymerase III su 98.2 2.3E-05 5E-10 85.4 13.7 199 153-352 14-227 (397)
81 PRK09087 hypothetical protein; 98.1 2E-05 4.3E-10 78.6 11.7 146 175-357 43-199 (226)
82 KOG4658 Apoptotic ATPase [Sign 98.1 2.2E-06 4.8E-11 101.1 5.3 102 646-759 761-867 (889)
83 PRK14969 DNA polymerase III su 98.1 3.4E-05 7.4E-10 86.7 14.3 183 153-353 14-221 (527)
84 PRK07764 DNA polymerase III su 98.1 5.1E-05 1.1E-09 88.9 15.6 181 153-351 13-219 (824)
85 PRK09111 DNA polymerase III su 98.1 5.8E-05 1.3E-09 85.5 15.5 182 151-354 20-234 (598)
86 PRK08903 DnaA regulatory inact 98.1 3.6E-05 7.8E-10 77.4 12.4 164 162-357 27-203 (227)
87 PF05621 TniB: Bacterial TniB 98.1 9E-05 2E-09 75.1 15.0 192 162-354 44-262 (302)
88 TIGR00767 rho transcription te 98.1 1.7E-05 3.7E-10 83.6 9.8 92 175-267 167-267 (415)
89 PRK14952 DNA polymerase III su 98.1 9.6E-05 2.1E-09 83.3 16.4 189 151-357 9-224 (584)
90 TIGR03345 VI_ClpV1 type VI sec 98.1 4.7E-05 1E-09 90.4 14.6 179 153-345 185-388 (852)
91 PRK14970 DNA polymerase III su 98.0 0.00013 2.8E-09 79.1 16.6 182 153-352 15-208 (367)
92 PRK14959 DNA polymerase III su 98.0 7.2E-05 1.6E-09 84.0 14.6 188 153-358 14-226 (624)
93 PRK05642 DNA replication initi 98.0 6.6E-05 1.4E-09 75.5 12.9 153 177-357 46-212 (234)
94 PF14580 LRR_9: Leucine-rich r 98.0 3.6E-06 7.9E-11 79.4 3.3 32 654-689 41-72 (175)
95 PRK14950 DNA polymerase III su 98.0 0.00015 3.2E-09 83.1 17.0 196 153-355 14-223 (585)
96 KOG2227 Pre-initiation complex 98.0 0.00055 1.2E-08 72.3 19.4 203 153-355 148-370 (529)
97 TIGR02639 ClpA ATP-dependent C 98.0 6.1E-05 1.3E-09 88.8 14.1 158 153-323 180-358 (731)
98 PRK14954 DNA polymerase III su 98.0 0.00021 4.5E-09 81.3 17.6 197 152-349 13-224 (620)
99 PRK14971 DNA polymerase III su 98.0 0.00016 3.5E-09 82.6 16.7 181 153-352 15-221 (614)
100 PRK08451 DNA polymerase III su 98.0 0.0002 4.4E-09 79.5 16.9 185 152-354 11-219 (535)
101 PRK07133 DNA polymerase III su 98.0 0.00016 3.4E-09 82.6 16.0 178 152-352 15-218 (725)
102 PRK14087 dnaA chromosomal repl 98.0 8.2E-05 1.8E-09 82.0 13.3 167 177-357 142-323 (450)
103 KOG0618 Serine/threonine phosp 97.9 4.4E-06 9.4E-11 94.2 3.1 228 505-752 219-489 (1081)
104 PRK06305 DNA polymerase III su 97.9 0.0002 4.4E-09 79.0 16.0 179 153-350 15-219 (451)
105 PRK14953 DNA polymerase III su 97.9 0.00035 7.5E-09 77.7 17.8 184 153-354 14-221 (486)
106 CHL00095 clpC Clp protease ATP 97.9 9.9E-05 2.1E-09 88.1 14.5 156 154-322 178-353 (821)
107 PF00308 Bac_DnaA: Bacterial d 97.9 0.00019 4E-09 71.4 13.8 163 176-355 34-210 (219)
108 TIGR02881 spore_V_K stage V sp 97.9 8E-05 1.7E-09 76.5 11.4 134 175-324 41-192 (261)
109 PHA02544 44 clamp loader, smal 97.9 9.8E-05 2.1E-09 78.4 12.4 148 151-321 17-171 (316)
110 KOG0989 Replication factor C, 97.9 0.00013 2.8E-09 72.8 11.4 185 149-348 30-225 (346)
111 PRK11331 5-methylcytosine-spec 97.8 6E-05 1.3E-09 80.9 9.2 108 155-267 175-284 (459)
112 PRK06647 DNA polymerase III su 97.8 0.00055 1.2E-08 77.4 17.2 183 152-353 13-220 (563)
113 KOG4237 Extracellular matrix p 97.8 1.1E-05 2.3E-10 82.7 3.2 88 622-724 270-357 (498)
114 PRK07399 DNA polymerase III su 97.8 0.00077 1.7E-08 70.6 17.1 197 155-355 4-223 (314)
115 KOG1259 Nischarin, modulator o 97.8 4.4E-06 9.6E-11 82.1 0.1 128 526-724 283-410 (490)
116 PRK03992 proteasome-activating 97.8 0.00045 9.8E-09 75.0 15.7 201 153-375 129-375 (389)
117 KOG3207 Beta-tubulin folding c 97.8 7.1E-06 1.5E-10 85.1 1.4 162 524-749 118-281 (505)
118 KOG2543 Origin recognition com 97.8 0.00082 1.8E-08 69.2 16.0 164 154-322 5-192 (438)
119 PRK14948 DNA polymerase III su 97.8 0.0007 1.5E-08 77.5 17.5 197 153-355 14-224 (620)
120 PRK05563 DNA polymerase III su 97.8 0.00075 1.6E-08 76.6 17.5 193 151-351 12-218 (559)
121 TIGR02880 cbbX_cfxQ probable R 97.8 0.00041 8.8E-09 71.9 13.8 131 178-324 60-209 (284)
122 COG2255 RuvB Holliday junction 97.8 0.00035 7.7E-09 69.0 12.4 179 151-358 22-228 (332)
123 CHL00181 cbbX CbbX; Provisiona 97.8 0.00053 1.1E-08 71.0 14.5 132 177-324 60-210 (287)
124 TIGR00362 DnaA chromosomal rep 97.7 0.00034 7.3E-09 76.9 13.2 159 177-352 137-309 (405)
125 PRK14965 DNA polymerase III su 97.7 0.00052 1.1E-08 78.3 15.0 187 151-356 12-224 (576)
126 PTZ00361 26 proteosome regulat 97.7 0.00051 1.1E-08 74.9 14.1 152 153-324 181-368 (438)
127 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00045 9.8E-09 82.8 14.9 157 153-323 171-349 (852)
128 PRK10865 protein disaggregatio 97.7 0.00034 7.3E-09 83.5 13.3 157 153-323 176-354 (857)
129 TIGR03689 pup_AAA proteasome A 97.6 0.00092 2E-08 74.0 14.8 160 153-325 180-380 (512)
130 PRK14088 dnaA chromosomal repl 97.6 0.0006 1.3E-08 75.2 13.4 181 176-372 130-332 (440)
131 PRK15386 type III secretion pr 97.6 5.8E-05 1.3E-09 80.1 5.1 116 622-753 48-170 (426)
132 COG1373 Predicted ATPase (AAA+ 97.6 0.00072 1.6E-08 73.5 13.7 137 160-320 22-164 (398)
133 KOG4237 Extracellular matrix p 97.6 2.1E-05 4.6E-10 80.5 1.6 77 504-583 66-145 (498)
134 PTZ00454 26S protease regulato 97.6 0.00084 1.8E-08 72.6 13.9 173 153-347 143-351 (398)
135 KOG0532 Leucine-rich repeat (L 97.6 2.4E-06 5.1E-11 91.2 -5.6 188 511-749 81-270 (722)
136 PRK11034 clpA ATP-dependent Cl 97.6 0.00016 3.5E-09 84.2 8.7 157 154-323 185-362 (758)
137 COG1222 RPT1 ATP-dependent 26S 97.6 0.0024 5.2E-08 65.4 15.8 199 149-373 145-393 (406)
138 PRK06620 hypothetical protein; 97.6 0.00031 6.7E-09 69.4 9.3 135 177-352 45-188 (214)
139 KOG1259 Nischarin, modulator o 97.6 9.1E-06 2E-10 80.0 -1.7 129 501-691 280-409 (490)
140 smart00382 AAA ATPases associa 97.6 0.00022 4.7E-09 65.4 7.6 90 177-269 3-92 (148)
141 cd00116 LRR_RI Leucine-rich re 97.6 3E-05 6.5E-10 82.6 1.9 123 622-750 161-289 (319)
142 PF05673 DUF815: Protein of un 97.5 0.0072 1.6E-07 59.5 18.0 51 153-203 25-79 (249)
143 PRK10536 hypothetical protein; 97.5 0.00075 1.6E-08 67.2 11.0 57 153-211 53-109 (262)
144 PRK00149 dnaA chromosomal repl 97.5 0.00084 1.8E-08 74.8 12.9 180 176-372 148-349 (450)
145 TIGR00763 lon ATP-dependent pr 97.5 0.0044 9.6E-08 73.7 19.5 47 156-202 321-373 (775)
146 COG3267 ExeA Type II secretory 97.5 0.0082 1.8E-07 58.9 17.6 190 162-356 38-248 (269)
147 PF13855 LRR_8: Leucine rich r 97.5 8.3E-05 1.8E-09 57.2 3.3 59 626-691 1-59 (61)
148 PRK05707 DNA polymerase III su 97.5 0.0024 5.3E-08 67.3 15.2 155 176-353 22-203 (328)
149 PF00004 AAA: ATPase family as 97.5 0.00023 5E-09 64.6 6.2 69 179-267 1-70 (132)
150 COG0466 Lon ATP-dependent Lon 97.5 0.0084 1.8E-07 67.0 19.0 155 155-323 323-508 (782)
151 PRK12422 chromosomal replicati 97.4 0.0019 4.2E-08 71.1 13.9 152 177-347 142-307 (445)
152 TIGR00602 rad24 checkpoint pro 97.4 0.00046 9.9E-09 78.4 9.2 204 150-357 79-327 (637)
153 TIGR01241 FtsH_fam ATP-depende 97.4 0.0033 7.2E-08 70.9 16.1 172 153-346 53-259 (495)
154 KOG2120 SCF ubiquitin ligase, 97.4 2.1E-05 4.6E-10 77.6 -1.6 177 506-723 186-373 (419)
155 CHL00176 ftsH cell division pr 97.4 0.0039 8.4E-08 71.6 16.2 170 154-345 182-386 (638)
156 PRK14086 dnaA chromosomal repl 97.4 0.0051 1.1E-07 69.2 16.6 159 177-352 315-487 (617)
157 cd00116 LRR_RI Leucine-rich re 97.3 0.0002 4.3E-09 76.2 4.6 92 623-724 190-289 (319)
158 COG0542 clpA ATP-binding subun 97.3 0.006 1.3E-07 70.0 16.5 104 156-267 492-605 (786)
159 PRK10787 DNA-binding ATP-depen 97.3 0.0086 1.9E-07 70.7 18.2 157 155-323 322-506 (784)
160 PRK06090 DNA polymerase III su 97.3 0.022 4.7E-07 59.6 18.8 176 162-371 10-216 (319)
161 PRK08118 topology modulation p 97.3 0.00014 3.1E-09 68.8 2.5 34 178-211 3-37 (167)
162 PF10443 RNA12: RNA12 protein; 97.2 0.02 4.3E-07 61.0 18.2 201 160-370 1-297 (431)
163 PRK08058 DNA polymerase III su 97.2 0.0069 1.5E-07 64.3 15.0 145 157-322 7-181 (329)
164 KOG0741 AAA+-type ATPase [Post 97.2 0.012 2.7E-07 63.1 16.2 157 175-357 537-716 (744)
165 PRK08116 hypothetical protein; 97.2 0.0012 2.5E-08 67.8 8.6 101 177-292 115-220 (268)
166 PRK12608 transcription termina 97.2 0.0025 5.5E-08 67.1 11.0 101 164-265 120-230 (380)
167 PRK08769 DNA polymerase III su 97.2 0.01 2.3E-07 62.0 15.6 172 161-353 10-208 (319)
168 PRK06871 DNA polymerase III su 97.1 0.015 3.2E-07 61.0 16.1 161 162-350 9-200 (325)
169 PRK10865 protein disaggregatio 97.1 0.049 1.1E-06 65.3 22.4 106 155-267 568-682 (857)
170 KOG2004 Mitochondrial ATP-depe 97.1 0.015 3.3E-07 64.8 16.1 100 154-267 410-517 (906)
171 KOG2982 Uncharacterized conser 97.1 0.00012 2.7E-09 72.3 0.2 43 525-568 69-111 (418)
172 PF04665 Pox_A32: Poxvirus A32 97.1 0.0017 3.6E-08 64.4 8.0 38 177-216 14-51 (241)
173 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0039 8.4E-08 74.4 12.6 106 155-267 566-680 (852)
174 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0051 1.1E-07 68.2 12.5 152 176-347 259-429 (489)
175 PHA00729 NTP-binding motif con 97.1 0.0034 7.4E-08 61.5 9.6 36 166-201 7-42 (226)
176 KOG3665 ZYG-1-like serine/thre 97.1 0.00032 7E-09 81.0 2.9 76 504-583 121-200 (699)
177 PLN03150 hypothetical protein; 97.0 0.0009 2E-08 77.5 6.3 114 627-756 419-532 (623)
178 COG0593 DnaA ATPase involved i 97.0 0.0038 8.2E-08 66.7 10.2 130 176-324 113-258 (408)
179 PRK15386 type III secretion pr 97.0 0.0029 6.3E-08 67.4 9.3 57 505-568 52-109 (426)
180 KOG0991 Replication factor C, 97.0 0.0014 3.1E-08 62.6 6.1 101 153-267 25-125 (333)
181 PF13177 DNA_pol3_delta2: DNA 97.0 0.0038 8.3E-08 58.8 9.0 136 159-311 1-162 (162)
182 PF00448 SRP54: SRP54-type pro 97.0 0.0041 8.9E-08 60.5 9.5 87 176-264 1-92 (196)
183 TIGR02237 recomb_radB DNA repa 97.0 0.0053 1.1E-07 60.8 10.3 85 176-264 12-106 (209)
184 KOG2982 Uncharacterized conser 97.0 0.0002 4.3E-09 70.9 0.1 136 621-769 92-229 (418)
185 KOG0743 AAA+-type ATPase [Post 96.9 0.11 2.3E-06 55.6 20.1 149 177-357 236-413 (457)
186 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0058 1.3E-07 61.7 10.7 89 176-265 19-125 (235)
187 PF13855 LRR_8: Leucine rich r 96.9 0.00095 2.1E-08 51.3 3.8 58 506-566 2-61 (61)
188 COG4886 Leucine-rich repeat (L 96.9 0.00077 1.7E-08 74.1 4.6 62 506-571 117-180 (394)
189 TIGR02640 gas_vesic_GvpN gas v 96.9 0.013 2.8E-07 60.2 13.2 55 163-224 10-64 (262)
190 KOG2228 Origin recognition com 96.9 0.025 5.4E-07 57.6 14.4 168 155-324 24-220 (408)
191 TIGR02639 ClpA ATP-dependent C 96.9 0.0065 1.4E-07 71.9 12.2 103 155-267 454-565 (731)
192 PF05659 RPW8: Arabidopsis bro 96.9 0.016 3.4E-07 53.0 11.9 111 2-128 3-114 (147)
193 PRK08181 transposase; Validate 96.9 0.0013 2.7E-08 67.2 5.3 80 168-267 100-179 (269)
194 TIGR03346 chaperone_ClpB ATP-d 96.9 0.012 2.7E-07 70.6 14.2 106 155-267 565-679 (852)
195 PLN03150 hypothetical protein; 96.9 0.0022 4.8E-08 74.3 7.5 40 622-666 462-501 (623)
196 PRK07261 topology modulation p 96.8 0.0032 7E-08 59.9 7.2 34 178-211 2-36 (171)
197 KOG1514 Origin recognition com 96.8 0.054 1.2E-06 60.6 17.2 199 155-357 396-625 (767)
198 COG0542 clpA ATP-binding subun 96.8 0.0036 7.8E-08 71.8 8.6 158 153-323 168-346 (786)
199 PF07693 KAP_NTPase: KAP famil 96.8 0.081 1.7E-06 56.4 18.6 43 161-203 2-47 (325)
200 PRK07993 DNA polymerase III su 96.8 0.044 9.6E-07 58.0 15.9 162 162-351 9-202 (334)
201 COG2812 DnaX DNA polymerase II 96.7 0.011 2.3E-07 65.3 11.3 189 152-348 13-215 (515)
202 PRK08939 primosomal protein Dn 96.7 0.0045 9.8E-08 64.6 8.0 115 159-291 135-259 (306)
203 COG1223 Predicted ATPase (AAA+ 96.7 0.014 3.1E-07 57.0 10.5 171 154-346 120-318 (368)
204 PF13207 AAA_17: AAA domain; P 96.7 0.0016 3.4E-08 58.2 3.8 24 178-201 1-24 (121)
205 PRK12377 putative replication 96.7 0.0094 2E-07 60.0 9.7 75 175-266 100-174 (248)
206 PRK06964 DNA polymerase III su 96.7 0.071 1.5E-06 56.4 16.7 91 254-353 131-225 (342)
207 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0026 5.7E-08 66.7 5.8 47 156-202 52-104 (361)
208 TIGR01243 CDC48 AAA family ATP 96.7 0.018 3.8E-07 68.5 13.4 173 154-348 177-382 (733)
209 TIGR02012 tigrfam_recA protein 96.7 0.0056 1.2E-07 63.8 8.0 84 176-266 55-144 (321)
210 KOG2120 SCF ubiquitin ligase, 96.7 0.00048 1E-08 68.3 0.1 183 528-750 186-374 (419)
211 TIGR01243 CDC48 AAA family ATP 96.6 0.02 4.3E-07 68.1 13.4 171 155-347 453-657 (733)
212 PRK09354 recA recombinase A; P 96.6 0.0073 1.6E-07 63.5 8.3 84 176-266 60-149 (349)
213 PRK07952 DNA replication prote 96.6 0.018 3.9E-07 57.9 10.7 90 162-267 83-174 (244)
214 cd00983 recA RecA is a bacter 96.6 0.0067 1.4E-07 63.2 7.8 83 176-265 55-143 (325)
215 KOG1859 Leucine-rich repeat pr 96.5 0.0003 6.6E-09 77.6 -2.4 18 551-568 106-123 (1096)
216 COG1484 DnaC DNA replication p 96.5 0.013 2.8E-07 59.6 9.4 82 167-267 98-179 (254)
217 cd01393 recA_like RecA is a b 96.5 0.022 4.7E-07 57.2 11.1 54 176-230 19-76 (226)
218 PRK00771 signal recognition pa 96.5 0.14 3E-06 56.2 17.7 87 175-265 94-185 (437)
219 PF01695 IstB_IS21: IstB-like 96.5 0.0056 1.2E-07 58.5 6.3 75 175-267 46-120 (178)
220 KOG0731 AAA+-type ATPase conta 96.5 0.04 8.8E-07 63.0 13.9 176 154-350 310-521 (774)
221 KOG1969 DNA replication checkp 96.5 0.0071 1.5E-07 67.5 7.7 74 175-267 325-399 (877)
222 TIGR03499 FlhF flagellar biosy 96.5 0.012 2.6E-07 60.9 9.1 88 175-264 193-281 (282)
223 TIGR02238 recomb_DMC1 meiotic 96.5 0.019 4.1E-07 60.1 10.6 89 176-265 96-201 (313)
224 COG0470 HolB ATPase involved i 96.5 0.013 2.9E-07 62.4 9.7 141 157-313 3-171 (325)
225 PRK14722 flhF flagellar biosyn 96.4 0.012 2.5E-07 62.8 8.9 88 176-265 137-225 (374)
226 KOG0734 AAA+-type ATPase conta 96.4 0.0076 1.7E-07 64.7 7.3 94 154-267 303-408 (752)
227 PLN03187 meiotic recombination 96.4 0.02 4.4E-07 60.4 10.6 89 176-265 126-231 (344)
228 PF08423 Rad51: Rad51; InterP 96.4 0.02 4.3E-07 58.3 10.2 88 176-264 38-142 (256)
229 PRK06696 uridine kinase; Valid 96.4 0.0053 1.2E-07 61.4 6.0 44 159-202 2-48 (223)
230 COG1419 FlhF Flagellar GTP-bin 96.4 0.026 5.6E-07 59.7 11.0 101 162-264 185-290 (407)
231 PRK09361 radB DNA repair and r 96.4 0.021 4.7E-07 57.1 10.2 44 176-222 23-66 (225)
232 PF12799 LRR_4: Leucine Rich r 96.4 0.0029 6.3E-08 44.7 2.7 38 627-671 2-39 (44)
233 PRK06995 flhF flagellar biosyn 96.4 0.25 5.3E-06 54.6 18.9 60 176-235 256-316 (484)
234 CHL00095 clpC Clp protease ATP 96.4 0.0093 2E-07 71.5 8.6 106 155-267 509-623 (821)
235 KOG0532 Leucine-rich repeat (L 96.4 0.0012 2.7E-08 71.1 1.1 144 506-691 122-270 (722)
236 TIGR01425 SRP54_euk signal rec 96.4 0.2 4.4E-06 54.4 17.9 58 175-234 99-157 (429)
237 KOG0739 AAA+-type ATPase [Post 96.3 0.057 1.2E-06 54.0 12.2 92 156-267 134-237 (439)
238 cd01120 RecA-like_NTPases RecA 96.3 0.025 5.5E-07 53.1 9.9 40 178-219 1-40 (165)
239 PF12799 LRR_4: Leucine Rich r 96.3 0.0064 1.4E-07 42.9 4.2 42 527-572 1-42 (44)
240 KOG0733 Nuclear AAA ATPase (VC 96.3 0.073 1.6E-06 58.5 13.9 94 154-267 189-294 (802)
241 KOG3665 ZYG-1-like serine/thre 96.3 0.0015 3.3E-08 75.5 1.5 119 622-753 169-289 (699)
242 PRK04132 replication factor C 96.3 0.065 1.4E-06 63.1 14.6 156 184-355 574-733 (846)
243 PRK05541 adenylylsulfate kinas 96.3 0.016 3.5E-07 55.6 8.1 36 175-212 6-41 (176)
244 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.032 6.9E-07 56.3 10.5 48 175-226 20-67 (237)
245 PRK10867 signal recognition pa 96.2 0.3 6.6E-06 53.4 18.5 59 175-234 99-158 (433)
246 PRK11889 flhF flagellar biosyn 96.2 0.038 8.2E-07 58.6 11.0 89 175-265 240-330 (436)
247 PRK11034 clpA ATP-dependent Cl 96.2 0.0083 1.8E-07 70.2 7.0 102 156-267 459-569 (758)
248 KOG0735 AAA+-type ATPase [Post 96.2 0.032 6.9E-07 62.2 10.8 149 176-345 431-607 (952)
249 PRK12724 flagellar biosynthesi 96.2 0.02 4.2E-07 61.5 9.0 85 176-264 223-308 (432)
250 cd01133 F1-ATPase_beta F1 ATP 96.2 0.044 9.5E-07 55.6 11.0 90 175-265 68-173 (274)
251 KOG0730 AAA+-type ATPase [Post 96.2 0.063 1.4E-06 59.7 12.8 152 154-325 433-617 (693)
252 PRK08533 flagellar accessory p 96.2 0.039 8.5E-07 55.3 10.5 53 176-233 24-76 (230)
253 PRK04301 radA DNA repair and r 96.2 0.039 8.4E-07 58.4 11.0 57 176-233 102-162 (317)
254 PRK09270 nucleoside triphospha 96.1 0.034 7.5E-07 55.8 10.1 30 174-203 31-60 (229)
255 cd01394 radB RadB. The archaea 96.1 0.035 7.5E-07 55.3 10.0 42 176-219 19-60 (218)
256 TIGR02236 recomb_radA DNA repa 96.1 0.045 9.7E-07 57.8 11.3 58 176-234 95-156 (310)
257 COG1102 Cmk Cytidylate kinase 96.1 0.015 3.1E-07 52.9 6.2 46 178-236 2-47 (179)
258 COG2884 FtsE Predicted ATPase 96.1 0.025 5.4E-07 52.9 7.8 28 175-202 27-54 (223)
259 KOG0736 Peroxisome assembly fa 96.1 0.17 3.6E-06 57.4 15.5 94 154-267 671-776 (953)
260 TIGR02239 recomb_RAD51 DNA rep 96.1 0.034 7.5E-07 58.4 10.0 58 176-234 96-157 (316)
261 PLN03186 DNA repair protein RA 96.1 0.034 7.3E-07 58.8 9.9 58 176-234 123-184 (342)
262 COG0563 Adk Adenylate kinase a 96.1 0.014 2.9E-07 55.8 6.3 25 178-202 2-26 (178)
263 PRK12727 flagellar biosynthesi 96.0 0.023 5.1E-07 62.6 8.7 88 176-265 350-438 (559)
264 COG1618 Predicted nucleotide k 96.0 0.0086 1.9E-07 54.4 4.4 28 177-204 6-33 (179)
265 COG4886 Leucine-rich repeat (L 96.0 0.0054 1.2E-07 67.4 3.9 176 525-756 114-294 (394)
266 PTZ00035 Rad51 protein; Provis 96.0 0.051 1.1E-06 57.7 11.0 89 176-265 118-223 (337)
267 PRK12726 flagellar biosynthesi 96.0 0.037 8.1E-07 58.5 9.6 89 175-265 205-295 (407)
268 PRK06526 transposase; Provisio 95.9 0.016 3.4E-07 58.9 6.5 74 176-267 98-171 (254)
269 KOG1909 Ran GTPase-activating 95.9 0.00078 1.7E-08 68.5 -2.8 122 623-750 182-309 (382)
270 cd01124 KaiC KaiC is a circadi 95.9 0.036 7.8E-07 53.6 8.8 45 178-226 1-45 (187)
271 PRK06921 hypothetical protein; 95.9 0.036 7.8E-07 56.8 9.1 72 175-265 116-187 (266)
272 KOG2035 Replication factor C, 95.9 0.13 2.9E-06 51.0 12.3 206 155-374 13-260 (351)
273 COG1066 Sms Predicted ATP-depe 95.9 0.05 1.1E-06 57.2 10.0 85 176-266 93-179 (456)
274 cd01121 Sms Sms (bacterial rad 95.9 0.031 6.6E-07 60.0 8.8 85 176-265 82-168 (372)
275 PRK06547 hypothetical protein; 95.9 0.012 2.7E-07 55.8 5.2 36 166-201 5-40 (172)
276 PRK04328 hypothetical protein; 95.9 0.039 8.5E-07 56.1 9.2 54 175-233 22-75 (249)
277 KOG0733 Nuclear AAA ATPase (VC 95.9 0.16 3.5E-06 56.0 13.9 130 176-325 545-694 (802)
278 PRK15455 PrkA family serine pr 95.9 0.011 2.4E-07 65.3 5.3 48 155-202 76-129 (644)
279 PRK09183 transposase/IS protei 95.8 0.045 9.7E-07 55.9 9.4 27 176-202 102-128 (259)
280 PLN00020 ribulose bisphosphate 95.8 0.033 7.2E-07 58.3 8.4 30 174-203 146-175 (413)
281 PRK06067 flagellar accessory p 95.8 0.06 1.3E-06 54.2 10.4 85 176-265 25-130 (234)
282 PRK08699 DNA polymerase III su 95.8 0.13 2.8E-06 54.3 13.1 26 176-201 21-46 (325)
283 PRK12723 flagellar biosynthesi 95.8 0.04 8.7E-07 59.3 9.1 89 175-265 173-264 (388)
284 PF06309 Torsin: Torsin; Inte 95.8 0.11 2.5E-06 45.6 10.2 45 156-200 26-77 (127)
285 cd03115 SRP The signal recogni 95.8 0.036 7.9E-07 52.9 8.0 54 178-233 2-56 (173)
286 PF07728 AAA_5: AAA domain (dy 95.8 0.023 4.9E-07 52.1 6.3 43 179-226 2-44 (139)
287 COG0464 SpoVK ATPases of the A 95.8 0.25 5.5E-06 55.9 16.1 131 175-325 275-425 (494)
288 COG4088 Predicted nucleotide k 95.7 0.0097 2.1E-07 56.2 3.6 27 177-203 2-28 (261)
289 cd01135 V_A-ATPase_B V/A-type 95.7 0.063 1.4E-06 54.4 9.6 92 175-266 68-177 (276)
290 PRK07667 uridine kinase; Provi 95.7 0.017 3.8E-07 56.2 5.5 38 165-202 4-43 (193)
291 cd03238 ABC_UvrA The excision 95.7 0.037 8E-07 52.7 7.5 120 175-307 20-161 (176)
292 TIGR02858 spore_III_AA stage I 95.7 0.048 1E-06 55.7 8.7 126 165-297 99-233 (270)
293 PF13238 AAA_18: AAA domain; P 95.6 0.01 2.2E-07 53.4 3.5 22 179-200 1-22 (129)
294 cd02025 PanK Pantothenate kina 95.6 0.05 1.1E-06 54.0 8.6 41 178-218 1-41 (220)
295 cd01125 repA Hexameric Replica 95.6 0.045 9.7E-07 55.4 8.5 140 178-317 3-198 (239)
296 KOG0729 26S proteasome regulat 95.6 0.077 1.7E-06 52.1 9.3 94 152-266 174-281 (435)
297 PF00154 RecA: recA bacterial 95.6 0.082 1.8E-06 55.1 10.3 85 176-267 53-143 (322)
298 COG0541 Ffh Signal recognition 95.6 1.7 3.6E-05 46.6 19.9 58 175-234 99-157 (451)
299 TIGR00959 ffh signal recogniti 95.6 0.078 1.7E-06 57.9 10.6 90 175-265 98-192 (428)
300 PF13481 AAA_25: AAA domain; P 95.6 0.065 1.4E-06 52.1 9.3 41 177-217 33-81 (193)
301 PF00485 PRK: Phosphoribulokin 95.6 0.012 2.5E-07 57.5 3.9 26 178-203 1-26 (194)
302 KOG1644 U2-associated snRNP A' 95.6 0.017 3.8E-07 54.5 4.7 63 506-571 43-105 (233)
303 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.07 1.5E-06 54.6 9.7 39 176-216 36-74 (259)
304 PRK04296 thymidine kinase; Pro 95.6 0.024 5.2E-07 55.0 5.9 110 177-294 3-117 (190)
305 PTZ00494 tuzin-like protein; P 95.6 0.5 1.1E-05 50.5 15.6 162 152-323 368-544 (664)
306 KOG0728 26S proteasome regulat 95.6 0.18 4E-06 49.1 11.5 148 156-323 147-331 (404)
307 TIGR00554 panK_bact pantothena 95.5 0.069 1.5E-06 55.1 9.5 28 174-201 60-87 (290)
308 PRK05703 flhF flagellar biosyn 95.5 0.038 8.1E-07 60.6 8.0 87 176-264 221-308 (424)
309 PRK13531 regulatory ATPase Rav 95.5 0.019 4.1E-07 62.7 5.6 50 156-207 21-70 (498)
310 KOG0744 AAA+-type ATPase [Post 95.5 0.058 1.2E-06 54.7 8.4 28 176-203 177-204 (423)
311 cd01131 PilT Pilus retraction 95.5 0.014 3.1E-07 57.0 4.2 110 177-296 2-112 (198)
312 TIGR00064 ftsY signal recognit 95.5 0.098 2.1E-06 53.7 10.5 59 174-234 70-129 (272)
313 COG0467 RAD55 RecA-superfamily 95.5 0.086 1.9E-06 54.1 10.2 42 174-217 21-62 (260)
314 PF03308 ArgK: ArgK protein; 95.5 0.024 5.3E-07 56.2 5.7 62 163-224 14-77 (266)
315 PRK06835 DNA replication prote 95.5 0.064 1.4E-06 56.6 9.2 38 176-215 183-220 (329)
316 PRK10733 hflB ATP-dependent me 95.5 0.06 1.3E-06 62.6 9.9 129 177-325 186-337 (644)
317 PRK14721 flhF flagellar biosyn 95.5 0.08 1.7E-06 57.4 10.0 87 176-264 191-278 (420)
318 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.033 7.2E-07 53.7 6.5 24 178-201 1-24 (183)
319 COG2607 Predicted ATPase (AAA+ 95.4 0.12 2.5E-06 50.4 9.7 98 154-277 59-164 (287)
320 cd02019 NK Nucleoside/nucleoti 95.4 0.014 3E-07 46.0 2.9 23 178-200 1-23 (69)
321 PF01583 APS_kinase: Adenylyls 95.4 0.03 6.4E-07 51.7 5.5 36 176-213 2-37 (156)
322 COG0468 RecA RecA/RadA recombi 95.4 0.1 2.3E-06 53.2 10.0 86 176-265 60-151 (279)
323 PRK14974 cell division protein 95.4 0.12 2.7E-06 54.5 10.8 90 175-266 139-233 (336)
324 COG1703 ArgK Putative periplas 95.4 0.023 5.1E-07 57.1 5.1 63 165-227 38-102 (323)
325 PF08433 KTI12: Chromatin asso 95.4 0.052 1.1E-06 55.5 7.9 26 177-202 2-27 (270)
326 PF13671 AAA_33: AAA domain; P 95.4 0.015 3.3E-07 53.4 3.7 24 178-201 1-24 (143)
327 KOG4341 F-box protein containi 95.3 0.002 4.2E-08 67.1 -2.5 214 525-754 162-387 (483)
328 PRK09519 recA DNA recombinatio 95.3 0.061 1.3E-06 62.5 9.1 83 176-265 60-148 (790)
329 PF10236 DAP3: Mitochondrial r 95.3 1.1 2.5E-05 46.9 18.0 47 304-350 258-306 (309)
330 PRK08233 hypothetical protein; 95.3 0.015 3.2E-07 56.1 3.5 26 176-201 3-28 (182)
331 TIGR02655 circ_KaiC circadian 95.3 0.075 1.6E-06 59.7 9.4 85 175-264 262-362 (484)
332 PTZ00301 uridine kinase; Provi 95.3 0.018 3.8E-07 56.6 3.9 26 176-201 3-28 (210)
333 PRK12597 F0F1 ATP synthase sub 95.3 0.079 1.7E-06 58.1 9.2 90 175-265 142-247 (461)
334 cd00544 CobU Adenosylcobinamid 95.2 0.058 1.3E-06 51.0 7.2 80 179-264 2-82 (169)
335 cd03247 ABCC_cytochrome_bd The 95.2 0.051 1.1E-06 52.1 7.1 27 175-201 27-53 (178)
336 PRK05480 uridine/cytidine kina 95.2 0.018 4E-07 56.9 4.1 27 174-200 4-30 (209)
337 PRK05439 pantothenate kinase; 95.2 0.13 2.7E-06 53.6 10.1 45 174-218 84-128 (311)
338 KOG1644 U2-associated snRNP A' 95.2 0.022 4.7E-07 53.9 4.0 89 624-724 62-151 (233)
339 COG4608 AppF ABC-type oligopep 95.2 0.068 1.5E-06 53.4 7.8 123 175-301 38-178 (268)
340 PF02562 PhoH: PhoH-like prote 95.2 0.026 5.7E-07 54.7 4.7 52 160-213 5-56 (205)
341 PF00006 ATP-synt_ab: ATP synt 95.2 0.058 1.3E-06 53.1 7.1 84 177-264 16-114 (215)
342 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.1 2.2E-06 56.9 9.5 91 175-266 137-243 (449)
343 TIGR00390 hslU ATP-dependent p 95.1 0.063 1.4E-06 57.5 7.7 74 155-230 12-103 (441)
344 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.024 5.2E-07 56.1 4.3 24 176-199 29-52 (213)
345 TIGR00235 udk uridine kinase. 95.1 0.022 4.7E-07 56.2 4.1 27 175-201 5-31 (207)
346 COG0194 Gmk Guanylate kinase [ 95.1 0.075 1.6E-06 49.9 7.1 25 176-200 4-28 (191)
347 PRK06762 hypothetical protein; 95.1 0.021 4.6E-07 54.1 3.7 25 176-200 2-26 (166)
348 cd03214 ABC_Iron-Siderophores_ 95.0 0.049 1.1E-06 52.4 6.1 118 175-297 24-162 (180)
349 PRK13765 ATP-dependent proteas 95.0 0.049 1.1E-06 62.4 7.1 77 153-233 29-105 (637)
350 PRK14723 flhF flagellar biosyn 95.0 0.099 2.2E-06 60.6 9.4 88 176-265 185-273 (767)
351 PF13245 AAA_19: Part of AAA d 95.0 0.062 1.3E-06 43.2 5.6 26 175-200 9-35 (76)
352 PRK00889 adenylylsulfate kinas 95.0 0.12 2.6E-06 49.4 8.7 28 175-202 3-30 (175)
353 PTZ00088 adenylate kinase 1; P 95.0 0.045 9.7E-07 54.6 5.8 23 179-201 9-31 (229)
354 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.21 4.5E-06 62.7 12.3 27 176-202 1630-1656(2281)
355 KOG1859 Leucine-rich repeat pr 94.9 0.0012 2.5E-08 73.2 -5.8 129 502-666 161-290 (1096)
356 cd03223 ABCD_peroxisomal_ALDP 94.9 0.11 2.3E-06 49.2 8.1 113 175-296 26-151 (166)
357 COG0572 Udk Uridine kinase [Nu 94.9 0.027 5.8E-07 54.7 3.9 29 175-203 7-35 (218)
358 TIGR01069 mutS2 MutS2 family p 94.9 0.066 1.4E-06 63.2 8.0 184 174-373 320-521 (771)
359 PRK11823 DNA repair protein Ra 94.9 0.06 1.3E-06 59.5 7.2 85 176-265 80-166 (446)
360 TIGR01360 aden_kin_iso1 adenyl 94.9 0.023 5.1E-07 55.0 3.6 26 175-200 2-27 (188)
361 PF12061 DUF3542: Protein of u 94.8 0.1 2.3E-06 52.4 7.8 75 16-92 297-372 (402)
362 cd03228 ABCC_MRP_Like The MRP 94.8 0.095 2.1E-06 49.9 7.5 27 175-201 27-53 (171)
363 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.21 4.7E-06 50.0 10.5 53 176-233 20-72 (229)
364 KOG3347 Predicted nucleotide k 94.8 0.025 5.5E-07 50.5 3.1 69 176-253 7-75 (176)
365 PRK05342 clpX ATP-dependent pr 94.8 0.069 1.5E-06 58.1 7.3 46 156-201 72-133 (412)
366 PF00910 RNA_helicase: RNA hel 94.8 0.022 4.8E-07 49.4 2.8 24 179-202 1-24 (107)
367 cd00561 CobA_CobO_BtuR ATP:cor 94.8 0.14 3E-06 47.5 8.2 115 177-293 3-138 (159)
368 PRK03839 putative kinase; Prov 94.8 0.026 5.6E-07 54.3 3.5 24 178-201 2-25 (180)
369 PF03205 MobB: Molybdopterin g 94.7 0.034 7.3E-07 50.8 4.0 39 177-216 1-39 (140)
370 TIGR00150 HI0065_YjeE ATPase, 94.7 0.053 1.2E-06 48.6 5.1 41 162-202 6-48 (133)
371 cd02027 APSK Adenosine 5'-phos 94.7 0.21 4.5E-06 46.3 9.4 24 178-201 1-24 (149)
372 PF03215 Rad17: Rad17 cell cyc 94.7 0.048 1E-06 61.1 5.9 56 155-214 19-79 (519)
373 PRK08972 fliI flagellum-specif 94.7 0.1 2.3E-06 56.5 8.1 88 175-266 161-263 (444)
374 cd03216 ABC_Carb_Monos_I This 94.7 0.028 6.1E-07 53.0 3.5 116 175-297 25-146 (163)
375 PRK08927 fliI flagellum-specif 94.7 0.15 3.2E-06 55.5 9.3 88 175-266 157-259 (442)
376 PF06745 KaiC: KaiC; InterPro 94.6 0.062 1.3E-06 53.9 6.0 48 176-226 19-66 (226)
377 COG1428 Deoxynucleoside kinase 94.6 0.028 6E-07 53.8 3.2 27 176-202 4-30 (216)
378 PTZ00185 ATPase alpha subunit; 94.6 0.26 5.7E-06 54.0 10.9 92 175-266 188-300 (574)
379 COG3640 CooC CO dehydrogenase 94.6 0.073 1.6E-06 51.7 6.0 51 178-236 2-52 (255)
380 TIGR00416 sms DNA repair prote 94.6 0.097 2.1E-06 58.0 7.9 85 176-265 94-180 (454)
381 KOG0652 26S proteasome regulat 94.6 0.71 1.5E-05 45.4 12.6 55 147-201 163-230 (424)
382 PF07724 AAA_2: AAA domain (Cd 94.6 0.041 8.8E-07 52.2 4.3 43 176-219 3-45 (171)
383 COG2019 AdkA Archaeal adenylat 94.6 0.21 4.7E-06 45.8 8.5 47 176-234 4-50 (189)
384 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.6 0.074 1.6E-06 49.0 5.9 103 175-297 25-131 (144)
385 KOG1532 GTPase XAB1, interacts 94.6 0.044 9.5E-07 54.1 4.4 63 175-237 18-89 (366)
386 PRK07132 DNA polymerase III su 94.6 1.3 2.7E-05 46.2 15.5 159 164-345 5-177 (299)
387 PRK09280 F0F1 ATP synthase sub 94.5 0.22 4.7E-06 54.5 10.2 91 175-266 143-249 (463)
388 PRK04040 adenylate kinase; Pro 94.5 0.035 7.5E-07 53.7 3.8 47 176-233 2-48 (188)
389 PRK13768 GTPase; Provisional 94.5 0.25 5.3E-06 50.4 10.0 36 177-214 3-38 (253)
390 PF07726 AAA_3: ATPase family 94.5 0.026 5.6E-07 49.8 2.3 25 179-203 2-26 (131)
391 TIGR02030 BchI-ChlI magnesium 94.4 0.061 1.3E-06 56.9 5.5 47 154-200 3-49 (337)
392 PRK00625 shikimate kinase; Pro 94.4 0.034 7.5E-07 52.8 3.3 24 178-201 2-25 (173)
393 PRK13407 bchI magnesium chelat 94.4 0.056 1.2E-06 57.0 5.1 48 153-200 6-53 (334)
394 PRK10751 molybdopterin-guanine 94.3 0.046 9.9E-07 51.6 3.9 29 175-203 5-33 (173)
395 TIGR01039 atpD ATP synthase, F 94.3 0.27 5.9E-06 53.6 10.3 92 175-267 142-249 (461)
396 PF13086 AAA_11: AAA domain; P 94.3 0.085 1.8E-06 52.9 6.3 35 164-200 7-41 (236)
397 COG1224 TIP49 DNA helicase TIP 94.3 0.086 1.9E-06 54.2 6.0 54 154-207 38-96 (450)
398 COG0396 sufC Cysteine desulfur 94.3 0.099 2.1E-06 50.7 6.1 59 245-306 153-217 (251)
399 PRK06002 fliI flagellum-specif 94.3 0.11 2.5E-06 56.4 7.4 88 176-266 165-265 (450)
400 PF12775 AAA_7: P-loop contain 94.3 0.051 1.1E-06 55.9 4.5 90 165-267 23-112 (272)
401 KOG0726 26S proteasome regulat 94.3 0.45 9.8E-06 47.6 10.7 93 153-266 183-289 (440)
402 PRK00131 aroK shikimate kinase 94.3 0.041 8.8E-07 52.5 3.6 26 176-201 4-29 (175)
403 PRK08149 ATP synthase SpaL; Va 94.3 0.17 3.7E-06 55.0 8.6 88 175-266 150-252 (428)
404 cd02023 UMPK Uridine monophosp 94.2 0.031 6.7E-07 54.7 2.8 23 178-200 1-23 (198)
405 PRK06851 hypothetical protein; 94.2 0.7 1.5E-05 49.3 13.0 44 173-217 211-254 (367)
406 CHL00081 chlI Mg-protoporyphyr 94.2 0.054 1.2E-06 57.3 4.6 49 153-201 15-63 (350)
407 TIGR03574 selen_PSTK L-seryl-t 94.2 0.13 2.8E-06 52.3 7.4 25 178-202 1-25 (249)
408 PRK10463 hydrogenase nickel in 94.2 0.081 1.8E-06 54.1 5.7 94 167-266 95-195 (290)
409 TIGR02902 spore_lonB ATP-depen 94.2 0.056 1.2E-06 61.3 5.0 49 153-201 63-111 (531)
410 TIGR01040 V-ATPase_V1_B V-type 94.2 0.18 3.8E-06 54.9 8.4 92 175-266 140-258 (466)
411 cd02024 NRK1 Nicotinamide ribo 94.2 0.035 7.7E-07 53.3 2.9 23 178-200 1-23 (187)
412 TIGR00764 lon_rel lon-related 94.1 0.13 2.7E-06 59.3 7.8 76 154-233 17-92 (608)
413 TIGR02322 phosphon_PhnN phosph 94.1 0.043 9.3E-07 52.7 3.4 25 177-201 2-26 (179)
414 COG0003 ArsA Predicted ATPase 94.1 0.11 2.3E-06 54.4 6.4 49 176-226 2-50 (322)
415 TIGR00750 lao LAO/AO transport 94.1 0.17 3.7E-06 53.0 8.1 30 174-203 32-61 (300)
416 cd02028 UMPK_like Uridine mono 94.0 0.042 9.2E-07 52.7 3.2 25 178-202 1-25 (179)
417 cd01122 GP4d_helicase GP4d_hel 94.0 0.41 8.9E-06 49.4 10.8 52 176-230 30-81 (271)
418 PF00625 Guanylate_kin: Guanyl 94.0 0.06 1.3E-06 51.9 4.3 38 176-215 2-39 (183)
419 PF05970 PIF1: PIF1-like helic 94.0 0.11 2.4E-06 56.1 6.7 42 162-203 8-49 (364)
420 PRK06217 hypothetical protein; 94.0 0.042 9.1E-07 53.0 3.1 34 178-212 3-38 (183)
421 TIGR01650 PD_CobS cobaltochela 94.0 0.19 4E-06 52.4 7.9 61 156-223 46-106 (327)
422 cd02029 PRK_like Phosphoribulo 94.0 0.15 3.2E-06 51.4 6.9 75 178-254 1-83 (277)
423 KOG0737 AAA+-type ATPase [Post 94.0 0.77 1.7E-05 47.9 12.1 29 175-203 126-154 (386)
424 PRK06936 type III secretion sy 94.0 0.2 4.4E-06 54.4 8.5 88 175-266 161-263 (439)
425 PLN02924 thymidylate kinase 94.0 0.38 8.3E-06 47.7 9.9 53 176-229 16-68 (220)
426 cd02021 GntK Gluconate kinase 94.0 0.04 8.7E-07 51.2 2.8 23 178-200 1-23 (150)
427 PRK09435 membrane ATPase/prote 94.0 0.51 1.1E-05 49.7 11.3 39 165-203 43-83 (332)
428 cd00227 CPT Chloramphenicol (C 94.0 0.048 1E-06 52.2 3.4 25 177-201 3-27 (175)
429 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.1 2.2E-06 54.4 6.0 93 155-252 61-166 (358)
430 PF03266 NTPase_1: NTPase; In 93.9 0.05 1.1E-06 51.4 3.4 24 179-202 2-25 (168)
431 PRK05201 hslU ATP-dependent pr 93.9 0.16 3.5E-06 54.5 7.5 76 155-230 15-106 (443)
432 cd02020 CMPK Cytidine monophos 93.9 0.044 9.6E-07 50.5 3.0 24 178-201 1-24 (147)
433 TIGR00382 clpX endopeptidase C 93.9 0.18 3.8E-06 54.7 7.9 47 155-201 77-141 (413)
434 PRK10416 signal recognition pa 93.9 0.49 1.1E-05 49.8 11.0 38 175-214 113-150 (318)
435 PF02374 ArsA_ATPase: Anion-tr 93.9 0.099 2.2E-06 54.7 5.8 46 177-224 2-47 (305)
436 TIGR00073 hypB hydrogenase acc 93.8 0.069 1.5E-06 52.6 4.3 31 171-201 17-47 (207)
437 KOG2739 Leucine-rich acidic nu 93.8 0.015 3.3E-07 57.2 -0.4 66 624-694 89-156 (260)
438 TIGR01041 ATP_syn_B_arch ATP s 93.8 0.24 5.2E-06 54.4 8.6 91 176-266 141-249 (458)
439 COG0465 HflB ATP-dependent Zn 93.7 0.35 7.6E-06 54.4 10.0 50 154-203 149-210 (596)
440 cd01134 V_A-ATPase_A V/A-type 93.7 0.47 1E-05 49.7 10.2 50 175-228 156-206 (369)
441 COG1936 Predicted nucleotide k 93.7 0.049 1.1E-06 50.3 2.7 20 178-197 2-21 (180)
442 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.13 2.9E-06 48.1 5.9 116 176-298 25-145 (157)
443 PHA02774 E1; Provisional 93.7 0.11 2.4E-06 57.8 5.9 52 163-218 420-472 (613)
444 TIGR00041 DTMP_kinase thymidyl 93.7 0.19 4.1E-06 49.0 7.2 27 177-203 4-30 (195)
445 TIGR03880 KaiC_arch_3 KaiC dom 93.7 0.33 7.2E-06 48.5 9.1 47 176-226 16-62 (224)
446 PRK05800 cobU adenosylcobinami 93.7 0.14 3E-06 48.5 5.9 47 178-230 3-49 (170)
447 PRK05922 type III secretion sy 93.7 0.32 6.8E-06 53.0 9.3 88 175-266 156-258 (434)
448 PRK05917 DNA polymerase III su 93.7 1.4 3E-05 45.4 13.4 39 163-201 5-44 (290)
449 PF06068 TIP49: TIP49 C-termin 93.7 0.11 2.3E-06 54.4 5.4 53 154-206 23-80 (398)
450 KOG2739 Leucine-rich acidic nu 93.7 0.029 6.3E-07 55.3 1.2 116 624-756 41-160 (260)
451 PF08477 Miro: Miro-like prote 93.7 0.059 1.3E-06 47.6 3.2 23 179-201 2-24 (119)
452 TIGR00708 cobA cob(I)alamin ad 93.6 0.3 6.5E-06 45.9 7.9 116 176-293 5-140 (173)
453 PRK14530 adenylate kinase; Pro 93.6 0.058 1.3E-06 53.6 3.4 25 177-201 4-28 (215)
454 COG0488 Uup ATPase components 93.6 1.2 2.6E-05 50.2 14.0 230 69-309 247-511 (530)
455 PRK14529 adenylate kinase; Pro 93.6 0.27 5.9E-06 48.6 7.9 82 179-265 3-86 (223)
456 cd01672 TMPK Thymidine monopho 93.6 0.19 4.2E-06 49.0 7.0 25 178-202 2-26 (200)
457 COG0529 CysC Adenylylsulfate k 93.5 0.14 3E-06 47.6 5.3 33 171-203 18-50 (197)
458 PRK13949 shikimate kinase; Pro 93.5 0.058 1.3E-06 51.2 3.1 24 178-201 3-26 (169)
459 PF13604 AAA_30: AAA domain; P 93.5 0.19 4.2E-06 48.9 6.8 36 168-203 10-45 (196)
460 PRK14527 adenylate kinase; Pro 93.5 0.066 1.4E-06 52.0 3.6 28 175-202 5-32 (191)
461 PRK13947 shikimate kinase; Pro 93.5 0.058 1.2E-06 51.4 3.1 25 178-202 3-27 (171)
462 cd03243 ABC_MutS_homologs The 93.5 0.069 1.5E-06 52.4 3.7 23 177-199 30-52 (202)
463 TIGR03263 guanyl_kin guanylate 93.5 0.052 1.1E-06 52.2 2.8 24 177-200 2-25 (180)
464 KOG0738 AAA+-type ATPase [Post 93.5 0.43 9.3E-06 49.9 9.3 27 177-203 246-272 (491)
465 PF00158 Sigma54_activat: Sigm 93.5 0.098 2.1E-06 49.5 4.5 44 158-201 2-47 (168)
466 cd01132 F1_ATPase_alpha F1 ATP 93.5 0.28 6.1E-06 49.8 8.0 88 176-267 69-173 (274)
467 PF01078 Mg_chelatase: Magnesi 93.5 0.14 2.9E-06 49.6 5.5 42 155-198 3-44 (206)
468 COG3598 RepA RecA-family ATPas 93.5 0.28 6E-06 49.9 7.7 87 178-264 91-203 (402)
469 cd01136 ATPase_flagellum-secre 93.5 0.32 7E-06 51.0 8.7 87 175-265 68-169 (326)
470 TIGR03498 FliI_clade3 flagella 93.5 0.26 5.5E-06 53.6 8.2 89 175-266 139-241 (418)
471 PRK00409 recombination and DNA 93.5 0.33 7.2E-06 57.6 9.8 179 174-373 325-526 (782)
472 COG1763 MobB Molybdopterin-gua 93.4 0.076 1.7E-06 49.3 3.6 28 176-203 2-29 (161)
473 cd03287 ABC_MSH3_euk MutS3 hom 93.4 0.086 1.9E-06 52.3 4.1 24 175-198 30-53 (222)
474 COG0714 MoxR-like ATPases [Gen 93.4 0.18 4E-06 53.6 7.0 64 157-227 26-89 (329)
475 PRK00300 gmk guanylate kinase; 93.4 0.068 1.5E-06 52.6 3.4 27 175-201 4-30 (205)
476 PRK13975 thymidylate kinase; P 93.4 0.074 1.6E-06 51.9 3.6 26 177-202 3-28 (196)
477 KOG2170 ATPase of the AAA+ sup 93.4 0.28 6.1E-06 49.5 7.5 97 157-267 84-190 (344)
478 cd00984 DnaB_C DnaB helicase C 93.4 0.69 1.5E-05 46.8 10.9 51 176-229 13-63 (242)
479 TIGR02655 circ_KaiC circadian 93.4 0.32 7E-06 54.7 9.1 86 175-264 20-129 (484)
480 cd00071 GMPK Guanosine monopho 93.3 0.057 1.2E-06 49.2 2.6 24 178-201 1-24 (137)
481 PF03193 DUF258: Protein of un 93.3 0.11 2.4E-06 48.2 4.5 34 164-200 26-59 (161)
482 PRK12339 2-phosphoglycerate ki 93.3 0.08 1.7E-06 51.5 3.7 25 176-200 3-27 (197)
483 PRK06731 flhF flagellar biosyn 93.3 0.4 8.7E-06 49.0 8.9 89 175-265 74-164 (270)
484 KOG2123 Uncharacterized conser 93.3 0.016 3.4E-07 57.3 -1.2 104 525-687 17-123 (388)
485 PF03029 ATP_bind_1: Conserved 93.3 0.075 1.6E-06 53.4 3.6 33 181-215 1-33 (238)
486 cd00464 SK Shikimate kinase (S 93.3 0.072 1.6E-06 49.6 3.3 23 179-201 2-24 (154)
487 PRK04196 V-type ATP synthase s 93.3 0.34 7.4E-06 53.4 8.9 90 176-266 143-251 (460)
488 COG1124 DppF ABC-type dipeptid 93.3 0.067 1.5E-06 52.4 3.0 27 175-201 32-58 (252)
489 PRK12678 transcription termina 93.3 0.34 7.4E-06 53.8 8.7 90 175-265 415-513 (672)
490 PRK09099 type III secretion sy 93.3 0.23 5E-06 54.3 7.5 89 175-266 162-264 (441)
491 cd00820 PEPCK_HprK Phosphoenol 93.3 0.076 1.6E-06 45.5 3.0 22 176-197 15-36 (107)
492 CHL00060 atpB ATP synthase CF1 93.3 0.59 1.3E-05 51.5 10.6 92 175-267 160-274 (494)
493 KOG0735 AAA+-type ATPase [Post 93.3 0.25 5.5E-06 55.4 7.7 71 177-267 702-772 (952)
494 TIGR01313 therm_gnt_kin carboh 93.2 0.057 1.2E-06 50.9 2.5 22 179-200 1-22 (163)
495 TIGR00176 mobB molybdopterin-g 93.2 0.072 1.6E-06 49.6 3.1 33 178-211 1-33 (155)
496 PF13521 AAA_28: AAA domain; P 93.2 0.073 1.6E-06 50.2 3.2 21 179-199 2-22 (163)
497 PRK14737 gmk guanylate kinase; 93.2 0.075 1.6E-06 51.2 3.3 26 175-200 3-28 (186)
498 PRK03846 adenylylsulfate kinas 93.2 0.13 2.8E-06 50.3 5.1 29 174-202 22-50 (198)
499 PRK07196 fliI flagellum-specif 93.2 0.33 7.1E-06 52.9 8.4 89 175-267 154-257 (434)
500 PRK07594 type III secretion sy 93.2 0.3 6.5E-06 53.2 8.2 88 175-266 154-256 (433)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-81 Score=723.74 Aligned_cols=709 Identities=26% Similarity=0.410 Sum_probs=526.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------cc
Q 003996 35 NLENLKAEMEKLMVERTSIQRRVSEAKEKGEDIEEKVEKWLVSANGIIDRAAKFVEHEEST-----------------NK 97 (780)
Q Consensus 35 ~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~l~~~~~~~ed~ld~~~~~-----------------~~ 97 (780)
.+.+.++.+..|++.+..+++++++|+.++. ....+..|...+++++|+++|.++.+.-. ++
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 4557888999999999999999999999974 47899999999999999999998865310 11
Q ss_pred ccccCCC-cchhhhhHHHHHHHHHHHHHHHHHhhccCccccccc-CCccccccccCCCcccccchHHHHHHHHHHhhcCC
Q 003996 98 RCLKGLC-PNLKTRYQLSKKAETEMKALLELGEEVKKFDIVSHR-TIPEEIWLKSNKGYEAFESRVSTLKSIQNALTDAN 175 (780)
Q Consensus 98 ~~~~~~~-~~~~~r~~i~~~i~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~~ 175 (780)
-|+.+.+ .++..-+.+++++-++...++.+ .....|..+... .++......+...... +|.+..++++.+.|.+++
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~ 178 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESL-GSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD 178 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHh-ccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC
Confidence 1222222 22334444555555555555555 233334444321 1111222222222333 899999999999999888
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh-ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS-ENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS---DEAEYRRASRLYERL 251 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---~~~~~~~~~~l~~~l 251 (780)
..+++|+||||+||||||+.++|+.. ++.+|+.++||.||+.++...++.+|++.++.... .....+.+..+.+.|
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL 258 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh
Confidence 89999999999999999999999998 89999999999999999999999999999987433 333456777888888
Q ss_pred hcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCC--CC
Q 003996 252 KNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDD--VE 328 (780)
Q Consensus 252 ~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~ 328 (780)
.. |||+|||||||+..+|+.++.++|...+||||++|||++.|+.. +++...+++..|+++|||.||++.++.. ..
T Consensus 259 ~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~ 337 (889)
T KOG4658|consen 259 EG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS 337 (889)
T ss_pred cc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc
Confidence 76 89999999999999999999999999999999999999999997 8888899999999999999999999843 33
Q ss_pred CcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHH
Q 003996 329 NCKFKSTAINVAQACGGLPIALTTVARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIF 407 (780)
Q Consensus 329 ~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf 407 (780)
.+.++++|++|+++|+|+|||++++|+.|+.+ +.++|+++.+.+.+....+.+++.+.++.++.+||++||++ +|.||
T Consensus 338 ~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CF 416 (889)
T KOG4658|consen 338 HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCF 416 (889)
T ss_pred cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHH
Confidence 45689999999999999999999999999977 88899999999988877777777889999999999999966 99999
Q ss_pred HhhcccC--CCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHHHHHHHcccccccC---CCCeEEEcHHHHHHHHHHhc
Q 003996 408 QLCSLIG--NSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALVHELRDCCLLLEGD---CNETFSMHDVVCDVAVSIAC 482 (780)
Q Consensus 408 ~~~s~fp--~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~---~~~~~~mHdlv~d~a~~~~~ 482 (780)
+|||+|| +.|+++.|+.+|+||||+.+....+.+++.+++++.+|++++|+.... ...+|+|||+|||+|.++++
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 9999999 899999999999999999987777788999999999999999998764 34689999999999999999
Q ss_pred -----cCcceEEEeccccccCCchhhhccceEEEeecCcccccCCCCCCCCccEEEeecCCC-CCCcccchHHHhcCCcc
Q 003996 483 -----RDQHVFLVRNEAVWEWPDEDALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQIT-FSEVNIPDNFFKGMKKL 556 (780)
Q Consensus 483 -----~~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~i~~~~~~~l~~L 556 (780)
++++++. .+.+....+....+..+|+++++++.+..++....+++|+||.+..+.. . ..++..||..|+.|
T Consensus 497 ~~~~~~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l--~~is~~ff~~m~~L 573 (889)
T KOG4658|consen 497 DFGKQEENQIVS-DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL--LEISGEFFRSLPLL 573 (889)
T ss_pred cccccccceEEE-CCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhh--hhcCHHHHhhCcce
Confidence 5663332 2223444567777889999999999999888888999999999998863 3 67899999999999
Q ss_pred eEEEecCC-CcCcccccccCCChhHHHh---hhcc-cCCC--------CCCCccC-------------------------
Q 003996 557 RVVDLTRI-EFGQLRSLTLGKLPKVTRF---CREV-KTPS--------TSPNRQE------------------------- 598 (780)
Q Consensus 557 rvLdL~~~-~~~~L~~L~i~~L~~L~~L---~~~l-~~P~--------~~l~~~~------------------------- 598 (780)
|||||++| .+.+||. +|++|.||||| ...+ .+|. .+|+...
T Consensus 574 rVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred EEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999976 4566766 67777777766 1111 1132 0000000
Q ss_pred -------CHHHH--hccccccc-------------------------c---ccccccccccccccccccccccccccccc
Q 003996 599 -------SQEEL--TASSDEIS-------------------------S---DTSTLLFNEKVVLPNLEALELNAINADEI 641 (780)
Q Consensus 599 -------~l~~L--~~~~~~~~-------------------------~---~~~~~~~~~~~~l~~L~~L~l~~~~l~~l 641 (780)
.+++| ++....+. . .........+..+.+|+.|.+...+..+.
T Consensus 653 ~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 653 ALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred ccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 01111 00000000 0 00011222334445555555544333211
Q ss_pred ccccCCC-Ccccc-ccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCccccc--ccccccCcccE
Q 003996 642 WHYNQLP-GMVPC-FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQV--TAYFVFPRVTT 717 (780)
Q Consensus 642 ~~~~~lP-~~~~~-l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~--~~~~~fp~L~~ 717 (780)
... ... ..... |++|..+.+.+|..++.+ .+..-.|+|+.|.+.+|..+++++........ ..+..|+++..
T Consensus 733 ~~~-~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 733 VIE-WEESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hcc-cccccchhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 000 000 00111 445555555555555444 33345689999999999999887664332111 12456777777
Q ss_pred E-eccCCCCccccCCCCCccCCcccceeecccCCCCCCcCCC
Q 003996 718 L-KLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQND 758 (780)
Q Consensus 718 L-~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~~~ 758 (780)
+ .+.+.+.+..+.+.. ..+|+|+.+.|..||+|..+|..
T Consensus 809 l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 809 LRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 7 577777777775433 45778999999999999988844
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-50 Score=491.47 Aligned_cols=524 Identities=19% Similarity=0.263 Sum_probs=359.5
Q ss_pred CcccccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe---CCC----------
Q 003996 153 GYEAFESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV---SQT---------- 217 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~---------- 217 (780)
+...++||+..++++..+|. .+++++|+|+||||+||||||+.+|++... +|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccccccc
Confidence 45678999999999998875 457899999999999999999999998764 4998887742 111
Q ss_pred -CC-HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHH
Q 003996 218 -PD-IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINV 295 (780)
Q Consensus 218 -~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v 295 (780)
.+ ...++++++.++....... ......+.+.+.+ +|+||||||||+...|+.+.......+.||+||||||+..+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 01 1234444444432211100 0012345566665 89999999999999998887665566789999999999999
Q ss_pred HhhcCCCceEecCCCCHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 003996 296 LLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDV-ENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQT 374 (780)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~ 374 (780)
+..++...+|+++.+++++||+||+++||... .+.++.+++++|+++|+|+|||++++|++|++++..+|+.+++++..
T Consensus 337 l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 337 LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRN 416 (1153)
T ss_pred HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 98777778999999999999999999999544 44567899999999999999999999999999999999999999875
Q ss_pred CCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcccCCCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHHHHHHH
Q 003996 375 PSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIGNSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALVHELRD 454 (780)
Q Consensus 375 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i~~L~~ 454 (780)
.. ...+..+|++||+.|+++..|.||+++|.|+...+.+. +..|++.+.... ...++.|++
T Consensus 417 ~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L~~ 477 (1153)
T PLN03210 417 GL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNLVD 477 (1153)
T ss_pred Cc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHHHh
Confidence 32 35689999999999987447999999999986655554 566776654321 123788999
Q ss_pred cccccccCCCCeEEEcHHHHHHHHHHhccCcceEEEeccccccCCc---------hhhhccceEEEeecCcccccCC---
Q 003996 455 CCLLLEGDCNETFSMHDVVCDVAVSIACRDQHVFLVRNEAVWEWPD---------EDALKKCYAISLLNSSIHEVSE--- 522 (780)
Q Consensus 455 ~~ll~~~~~~~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~lsl~~~~~~~~~~--- 522 (780)
+||++.. .+.+.|||++|++|++++.++.. ..+.....|.. ......++.+++..+.+..+.-
T Consensus 478 ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 478 KSLIHVR--EDIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred cCCEEEc--CCeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 9999764 35799999999999999876531 01111111111 1122456777766554433211
Q ss_pred -CCCCCCccEEEeecCCCC----CCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCcc
Q 003996 523 -EFECPQLEFLYIDPQITF----SEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQ 597 (780)
Q Consensus 523 -~~~~~~Lr~L~l~~~~~~----~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~ 597 (780)
...+++|+.|.+..+... ....+|.++..-...||+|++.++.+..||. .+ .+.+|+.| .++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L----~L~~------ 620 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKL----QMQG------ 620 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC-cC-CccCCcEE----ECcC------
Confidence 135778888877644211 0134565543323458888888887777664 22 33444444 0000
Q ss_pred CCHHHHhcccccccccccccccccccccccccccccccc-cccccccccCCCCccccccCccEEeeccCccCccccchhh
Q 003996 598 ESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAI-NADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSAST 676 (780)
Q Consensus 598 ~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 676 (780)
..+ ..+......+++|+.|+|+++ +++. +|. +..+++|+.|+|++|..+..+| ..
T Consensus 621 ----------s~l-----~~L~~~~~~l~~Lk~L~Ls~~~~l~~------ip~-ls~l~~Le~L~L~~c~~L~~lp--~s 676 (1153)
T PLN03210 621 ----------SKL-----EKLWDGVHSLTGLRNIDLRGSKNLKE------IPD-LSMATNLETLKLSDCSSLVELP--SS 676 (1153)
T ss_pred ----------ccc-----cccccccccCCCCCEEECCCCCCcCc------CCc-cccCCcccEEEecCCCCccccc--hh
Confidence 000 001123455677777777763 3433 232 5566778888888877777776 56
Q ss_pred HhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 677 IQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 677 l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
++.|++|+.|.+++|..++.+|. . ..+++|++|.|.+|..++.++. ..++|+.|++.++. ++.+|
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~--------~-i~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~-i~~lP 741 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPT--------G-INLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETA-IEEFP 741 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCC--------c-CCCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCc-ccccc
Confidence 77777888888877777777664 1 2467777888887777776642 13567777776665 44444
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-42 Score=365.18 Aligned_cols=273 Identities=30% Similarity=0.503 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHhhc--CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-
Q 003996 160 RVSTLKSIQNALTD--ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS- 236 (780)
Q Consensus 160 R~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~- 236 (780)
|+.++++|.++|.+ ++.++|+|+|+||+||||||..++++...+++|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997777889999999999999999999999999988732
Q ss_pred ---chhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhhcCC-CceEecCCCCH
Q 003996 237 ---DEAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLSMGS-KDNFLIGNLNE 312 (780)
Q Consensus 237 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~-~~~~~l~~L~~ 312 (780)
..+.......+.+.+.+ +++||||||||+...|+.+...++....|++||||||+..++..++. ...+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34555677888888887 69999999999999999888888777789999999999988875554 67899999999
Q ss_pred HHHHHHHHHHcCCCC--CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-CHHHHHHHHHHhcCCCCCCcCCCCccccc
Q 003996 313 EEAWRLFKIMNGDDV--ENCKFKSTAINVAQACGGLPIALTTVARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYS 389 (780)
Q Consensus 313 ~e~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 389 (780)
+||++||.+.++... ..+...+.+++|+++|+|+|||++++|++|+.+ +..+|+.+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998543 345566789999999999999999999999744 788999999886655432 1224678999
Q ss_pred hHHhhhccCChhhHHHHHHhhcccC--CCCCHHHHHHHHHhcCcccCc
Q 003996 390 SIELSFKYLKGEQLKKIFQLCSLIG--NSFCLIDLLRYSMGLGIFHRV 435 (780)
Q Consensus 390 ~l~~sy~~L~~~~~k~cf~~~s~fp--~~i~~~~Li~~W~a~g~i~~~ 435 (780)
++.+||+.||++ +|+||+|||+|| ..|+.+.|+++|+++|||...
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999997 999999999999 678899999999999998754
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=1.9e-12 Score=158.31 Aligned_cols=293 Identities=15% Similarity=0.196 Sum_probs=182.7
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKL 231 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l 231 (780)
....++-|..-.+.+.+ ....+++.|+|++|.||||++..+.+. ++.++|+++.. ..+...+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34466777765555543 245789999999999999999998853 23689999964 445666667777666
Q ss_pred CCCCCc--------------hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc--CccccCCCC-CCCCCCcEEEEEeCCh
Q 003996 232 GLELSD--------------EAEYRRASRLYERLKN-ENKILVILDNIWKHL--DLDTVGIPF-GNDHEGCRLLLTARDI 293 (780)
Q Consensus 232 ~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~~l~~~l-~~~~~gs~IlvTTR~~ 293 (780)
+..... .........+...+.. +.+++|||||+...+ ....+...+ .....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421110 1112234445555543 578999999997653 122222222 2233466788999973
Q ss_pred HHH---hhcCCCceEecC----CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHH
Q 003996 294 NVL---LSMGSKDNFLIG----NLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWK 366 (780)
Q Consensus 294 ~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~ 366 (780)
... ..........+. +|+.+|+.++|....+.... .+...+|.+.|+|+|+++..++..+...... ..
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~ 237 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LH 237 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hh
Confidence 211 100112244555 99999999999887664432 2456799999999999999988877543210 00
Q ss_pred HHHHHhcCCCCCCcCCCCccccchHHh-hhccCChhhHHHHHHhhcccCCCCCHHHHHHHHHhcCcccCccchHHHHHHH
Q 003996 367 NALRELQTPSVVNFEGVPAETYSSIEL-SFKYLKGEQLKKIFQLCSLIGNSFCLIDLLRYSMGLGIFHRVNKMEDARNKL 445 (780)
Q Consensus 367 ~~l~~l~~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cf~~~s~fp~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~ 445 (780)
.....+... ....+...+.- .++.||++ .+..+...|+++ .|+.+.+-... | . ...
T Consensus 238 ~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~l~~~l~---~----~-------~~~ 294 (903)
T PRK04841 238 DSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDALIVRVT---G----E-------ENG 294 (903)
T ss_pred hhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHHHHHHHc---C----C-------CcH
Confidence 111111000 01234444433 47899998 899999999998 56644332221 1 1 112
Q ss_pred HHHHHHHHHcccccc-c-CCCCeEEEcHHHHHHHHHHhc
Q 003996 446 YALVHELRDCCLLLE-G-DCNETFSMHDVVCDVAVSIAC 482 (780)
Q Consensus 446 ~~~i~~L~~~~ll~~-~-~~~~~~~mHdlv~d~a~~~~~ 482 (780)
.+.+++|.+++++.. . +...+|+.|+++++++.....
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 457888889999753 2 234579999999999988763
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.33 E-value=7.4e-12 Score=154.38 Aligned_cols=106 Identities=19% Similarity=0.302 Sum_probs=79.1
Q ss_pred CCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcc------------cccccccccC
Q 003996 646 QLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRT------------DQVTAYFVFP 713 (780)
Q Consensus 646 ~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~------------~~~~~~~~fp 713 (780)
.+|.+++.+++|+.|+|++|.+++.+|. . ..+++|+.|.+++|..+..++..... .....+..|+
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~--~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPT--G-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCC--C-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCC
Confidence 4677788899999999999988888852 2 26889999999999887765432110 0002355688
Q ss_pred cccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 714 RVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 714 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+|+.|+|.+|++|+.++. ....+++|+.|.+++|++|+.++
T Consensus 870 ~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 899999999999998854 44678889999999999988554
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=2.9e-10 Score=124.81 Aligned_cols=286 Identities=16% Similarity=0.160 Sum_probs=171.2
Q ss_pred cccccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
+..++||++++++|...+. ......+.|+|++|+|||++++.++++.......-..++++.....+...++..|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3568999999999998874 234466789999999999999999998765432345677777777788899999999
Q ss_pred HhCC-CC--CchhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc---C---ccccCCCCCCCCCCcE--EEEEeCChHHHh
Q 003996 230 KLGL-EL--SDEAEYRRASRLYERLKN-ENKILVILDNIWKHL---D---LDTVGIPFGNDHEGCR--LLLTARDINVLL 297 (780)
Q Consensus 230 ~l~~-~~--~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---~---~~~l~~~l~~~~~gs~--IlvTTR~~~v~~ 297 (780)
++.. .. ...+..+....+.+.+.. +++.+||+|+++... . +..+...+ ....+++ +|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhh
Confidence 9865 21 222344556667777654 456899999997642 1 22221111 1112333 566665543322
Q ss_pred hcC-------CCceEecCCCCHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHH----hCCChHHHHHHHHHHh-----cC
Q 003996 298 SMG-------SKDNFLIGNLNEEEAWRLFKIMNGDDV-ENCKFKSTAINVAQA----CGGLPIALTTVARALR-----NK 360 (780)
Q Consensus 298 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~----c~GlPLai~~~~~~L~-----~~ 360 (780)
... ....+.+++++.++..+++..++.... ...--.++.+.|++. .|..+.|+..+-.+.. +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 111 124678999999999999998764211 001112333444444 4557777777654322 11
Q ss_pred ---CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHh-hc-ccC---CCCCHHHHHHH--HHhcC
Q 003996 361 ---SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQL-CS-LIG---NSFCLIDLLRY--SMGLG 430 (780)
Q Consensus 361 ---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~-~s-~fp---~~i~~~~Li~~--W~a~g 430 (780)
+.+....+.+... .....-.+..||.+ +..|++ ++ ... ..+....+... .+++.
T Consensus 268 ~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 5667766666531 12234567899997 444443 22 221 34555555432 22221
Q ss_pred cccCccchHHHHHHHHHHHHHHHHcccccc
Q 003996 431 IFHRVNKMEDARNKLYALVHELRDCCLLLE 460 (780)
Q Consensus 431 ~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~ 460 (780)
+-.. ......+..++++|...|++..
T Consensus 332 ~~~~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGYE----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCCC----cCcHHHHHHHHHHHHhcCCeEE
Confidence 1000 0123456678889999999863
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=1.1e-09 Score=113.47 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=117.1
Q ss_pred cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHH----
Q 003996 173 DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLY---- 248 (780)
Q Consensus 173 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~---- 248 (780)
..+.+++.|+|++|+||||+++.+++...... + ...|+ +....+..+++..|+..++.+............+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998876321 1 22333 23345778899999999988655433333333333
Q ss_pred HHHhcCCeEEEEEeCCCCcc--CccccC---CCCCCCCCCcEEEEEeCChHHHhhcC----------CCceEecCCCCHH
Q 003996 249 ERLKNENKILVILDNIWKHL--DLDTVG---IPFGNDHEGCRLLLTARDINVLLSMG----------SKDNFLIGNLNEE 313 (780)
Q Consensus 249 ~~l~~~k~~LlVlDdv~~~~--~~~~l~---~~l~~~~~gs~IlvTTR~~~v~~~~~----------~~~~~~l~~L~~~ 313 (780)
.....+++.++|+||++... .++.+. ..-.+......|++|.... ....+. ....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 33345678999999998763 333332 1111122233455655432 221111 1336789999999
Q ss_pred HHHHHHHHHcCCC---CCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 314 EAWRLFKIMNGDD---VENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 314 e~~~Lf~~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
|..+++...+... ....-..+..+.|++.++|.|..|+.++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998776421 1122235788999999999999999999877
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.22 E-value=2.6e-11 Score=149.23 Aligned_cols=224 Identities=19% Similarity=0.171 Sum_probs=117.3
Q ss_pred cceEEEeecCcccccC-C-CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc---------ccccc-
Q 003996 506 KCYAISLLNSSIHEVS-E-EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ---------LRSLT- 573 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~-~-~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~---------L~~L~- 573 (780)
.++.+.+..+.+.... . ...+++|++|.+.++... ..+|.++|..+++||+|+|++|++.. |++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 5777777777654322 1 136788888888877654 56777777788888888888887643 22222
Q ss_pred ------------cCCChhHHHh---hhc-ccC-CCCCCCccCCHHHHhcccccccccc---ccccccccccccccccccc
Q 003996 574 ------------LGKLPKVTRF---CRE-VKT-PSTSPNRQESQEELTASSDEISSDT---STLLFNEKVVLPNLEALEL 633 (780)
Q Consensus 574 ------------i~~L~~L~~L---~~~-l~~-P~~~l~~~~~l~~L~~~~~~~~~~~---~~~~~~~~~~l~~L~~L~l 633 (780)
+++|++|++| .+. ... |. .+....+|+. +.... ....+..+..+++|+.|+|
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-------L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEF-------LTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCe-------eeccCCCCcCcCChHHcCcCCccEEEC
Confidence 3334444443 000 001 11 0000000000 00000 0112234455556666666
Q ss_pred ccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccC
Q 003996 634 NAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFP 713 (780)
Q Consensus 634 ~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp 713 (780)
++|++. ..+|..++.+++|++|++++|.....+| ..++.+++|+.|.+++|.-...++. .+..++
T Consensus 220 ~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~--------~l~~l~ 284 (968)
T PLN00113 220 GYNNLS-----GEIPYEIGGLTSLNHLDLVYNNLTGPIP--SSLGNLKNLQYLFLYQNKLSGPIPP--------SIFSLQ 284 (968)
T ss_pred cCCccC-----CcCChhHhcCCCCCEEECcCceeccccC--hhHhCCCCCCEEECcCCeeeccCch--------hHhhcc
Confidence 555543 2345456666666666666665333343 4566666666666665543222221 345667
Q ss_pred cccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 714 RVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 714 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+|++|++++|.-...++. ....+++|+.|++.+|.-...+|
T Consensus 285 ~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred CcCEEECcCCeeccCCCh--hHcCCCCCcEEECCCCccCCcCC
Confidence 777777777643333422 22456777888777776433333
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.19 E-value=3.9e-11 Score=147.62 Aligned_cols=226 Identities=18% Similarity=0.138 Sum_probs=151.4
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc-ccccccCCChhHHHh
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ-LRSLTLGKLPKVTRF 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~-L~~L~i~~L~~L~~L 583 (780)
.+++++.+.+|.+........+++|++|.+.++... ..+|.. +.++++|++|+|++|.+.. ++. .+++|++|++|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~--~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS--GEIPND-IGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCccc--ccCChH-HhcCCCCCEEECccCcccccCCh-hhhhCcCCCee
Confidence 567888888777654333345788888888877654 445544 6888899999998887753 554 57788888887
Q ss_pred ----hhcccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCcc
Q 003996 584 ----CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLT 658 (780)
Q Consensus 584 ----~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~ 658 (780)
+..... |. .+.....|+.|--+...+ ....+..+..+++|++|++++|++. +.+|..++.+++|+
T Consensus 194 ~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~ 263 (968)
T PLN00113 194 TLASNQLVGQIPR-ELGQMKSLKWIYLGYNNL----SGEIPYEIGGLTSLNHLDLVYNNLT-----GPIPSSLGNLKNLQ 263 (968)
T ss_pred eccCCCCcCcCCh-HHcCcCCccEEECcCCcc----CCcCChhHhcCCCCCEEECcCceec-----cccChhHhCCCCCC
Confidence 211112 32 111001111110000000 1123446778999999999998876 35677789999999
Q ss_pred EEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCC
Q 003996 659 RLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW 738 (780)
Q Consensus 659 ~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 738 (780)
.|+|++|.....+| ..+..+++|+.|++++|.-...++. .+..+++|++|++.++.-...++ .....+
T Consensus 264 ~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l 331 (968)
T PLN00113 264 YLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLSGEIPE--------LVIQLQNLEILHLFSNNFTGKIP--VALTSL 331 (968)
T ss_pred EEECcCCeeeccCc--hhHhhccCcCEEECcCCeeccCCCh--------hHcCCCCCcEEECCCCccCCcCC--hhHhcC
Confidence 99999997444554 6788999999999998764433432 45678999999999986544553 234678
Q ss_pred cccceeecccCCCCCCcC
Q 003996 739 PALKNLVACNCDKITLSQ 756 (780)
Q Consensus 739 p~L~~L~i~~C~~L~~~~ 756 (780)
|+|+.|.+.+|.--..+|
T Consensus 332 ~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CCCCEEECcCCCCcCcCC
Confidence 999999999997544555
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=4.1e-11 Score=121.46 Aligned_cols=192 Identities=21% Similarity=0.333 Sum_probs=106.0
Q ss_pred ccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH---------
Q 003996 157 FESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI--------- 227 (780)
Q Consensus 157 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i--------- 227 (780)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+... + .++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 789999999999998877678999999999999999999999875321 1 3344444333322 112221
Q ss_pred -HHHhCCCC-----------CchhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-Ccc---c----c---CCCCCCCCCC
Q 003996 228 -AEKLGLEL-----------SDEAEYRRASRLYERLKN-ENKILVILDNIWKHL-DLD---T----V---GIPFGNDHEG 283 (780)
Q Consensus 228 -~~~l~~~~-----------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~---~----l---~~~l~~~~~g 283 (780)
.+.++... ...........+.+.+.. +++++||+||+.... ... . + ..... ....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCC
Confidence 12221110 112333445566666654 345999999997655 111 1 1 11111 2234
Q ss_pred cEEEEEeCChHHHhh--------cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 284 CRLLLTARDINVLLS--------MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 284 s~IlvTTR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
..+|+++.+...... .+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445566555544432 233446999999999999999997543311111245668999999999998864
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.19 E-value=4.2e-10 Score=125.15 Aligned_cols=293 Identities=18% Similarity=0.186 Sum_probs=187.0
Q ss_pred cccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhC
Q 003996 154 YEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLG 232 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~ 232 (780)
....+-|..-.+.+.. ..+.+.+.|..|+|.|||||+.+....... -..+.|.+.+. ..+.......++..++
T Consensus 18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 4455666554444433 247899999999999999999999874332 35699999875 4567888888888887
Q ss_pred CCCCch--------------hHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc--Cccc-cCCCCCCCCCCcEEEEEeCChH
Q 003996 233 LELSDE--------------AEYRRASRLYERLKN-ENKILVILDNIWKHL--DLDT-VGIPFGNDHEGCRLLLTARDIN 294 (780)
Q Consensus 233 ~~~~~~--------------~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~~-l~~~l~~~~~gs~IlvTTR~~~ 294 (780)
.-.+.. +.......+...+.. .+++.+||||..-.. .+.. +.-.+.....+-.+|||||+..
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 432221 112234445554443 478999999986432 2221 1111122335778999999864
Q ss_pred HHhhc---CCCceEec----CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC-CHHHHH
Q 003996 295 VLLSM---GSKDNFLI----GNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNK-SLHEWK 366 (780)
Q Consensus 295 v~~~~---~~~~~~~l----~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~ 366 (780)
-.... -.....++ =.|+.+|+.++|....+...+. ..++.+.+..+|.+-|+..++=.+++. +.+.-.
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~ 247 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSL 247 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHh
Confidence 32210 01112223 2589999999999876544333 456789999999999999999888833 333322
Q ss_pred HHHHHhcCCCCCCcCCCCccccch-HHhhhccCChhhHHHHHHhhcccCCCCCHHHHHHHHHhcCcccCccchHHHHHHH
Q 003996 367 NALRELQTPSVVNFEGVPAETYSS-IELSFKYLKGEQLKKIFQLCSLIGNSFCLIDLLRYSMGLGIFHRVNKMEDARNKL 445 (780)
Q Consensus 367 ~~l~~l~~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~ 445 (780)
..+.- ..+-+... ..--++.||++ +|..++-||++++- -+.|+..-. .++.+
T Consensus 248 ~~LsG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f--~~eL~~~Lt-------------g~~ng 300 (894)
T COG2909 248 RGLSG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF--NDELCNALT-------------GEENG 300 (894)
T ss_pred hhccc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh--hHHHHHHHh-------------cCCcH
Confidence 22111 01112222 23457899998 99999999998721 123333221 12334
Q ss_pred HHHHHHHHHcccccc--cCCCCeEEEcHHHHHHHHHHhcc
Q 003996 446 YALVHELRDCCLLLE--GDCNETFSMHDVVCDVAVSIACR 483 (780)
Q Consensus 446 ~~~i~~L~~~~ll~~--~~~~~~~~mHdlv~d~a~~~~~~ 483 (780)
..++++|.+++|+.. ++....|+.|.++.||.+.....
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 557999999999863 45667999999999999988765
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=1.4e-08 Score=110.31 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=168.3
Q ss_pred ccccchHHHHHHHHHHhhc----CCeEEEEEEeCCCChHHHHHHHHHHHhhccC-CC---CEEEEEEeCCCCCHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD----ANVSIIGVYGMGGIGKTTLVKEFVRQASENK-LF---DRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~i~~~ 226 (780)
..++||++++++|..++.+ .....+.|+|++|+|||++++.+++...... .. -..+|++.....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999998862 3456789999999999999999998764321 11 24677887777788899999
Q ss_pred HHHHh---CCCCC--chhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-Ccc----ccCCCC-CCCC--CCcEEEEEeCC
Q 003996 227 IAEKL---GLELS--DEAEYRRASRLYERLK-NENKILVILDNIWKHL-DLD----TVGIPF-GNDH--EGCRLLLTARD 292 (780)
Q Consensus 227 i~~~l---~~~~~--~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~~~----~l~~~l-~~~~--~gs~IlvTTR~ 292 (780)
|++++ +...+ ..+..+....+.+.+. .+++++||||+++... ..+ .+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99998 43322 2233444556666664 3467899999997662 111 111110 1111 22345555544
Q ss_pred hHHHhhcC-------CCceEecCCCCHHHHHHHHHHHcCC----CCCCcchHHHHHHHHHHhCCChHHHHHHH-HHH--h
Q 003996 293 INVLLSMG-------SKDNFLIGNLNEEEAWRLFKIMNGD----DVENCKFKSTAINVAQACGGLPIALTTVA-RAL--R 358 (780)
Q Consensus 293 ~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~l~~~~~~I~~~c~GlPLai~~~~-~~L--~ 358 (780)
......+. ....+.+++++.++..+++..++.. ..-+++..+....++....|.|..+..+. .+. .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33221111 1246889999999999999988641 11223333344556777778885443322 221 1
Q ss_pred ---c---CCHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhccc---C-CCCCHHHHHHHHH-
Q 003996 359 ---N---KSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLI---G-NSFCLIDLLRYSM- 427 (780)
Q Consensus 359 ---~---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f---p-~~i~~~~Li~~W~- 427 (780)
+ -+.+....+.+.+. .....-++..||.+ .+..+..++.. . ..+....+...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 15555555555431 12234466788887 44444333211 2 4466666655331
Q ss_pred -hcCcccCccchHHHHHHHHHHHHHHHHcccccc
Q 003996 428 -GLGIFHRVNKMEDARNKLYALVHELRDCCLLLE 460 (780)
Q Consensus 428 -a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~ 460 (780)
++.+-. .......+.++++.|...|++..
T Consensus 320 ~~~~~~~----~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 320 VCEDIGV----DPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHhcCC----CCCcHHHHHHHHHHHHhcCCeEE
Confidence 121100 01234566778888999999864
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.13 E-value=7.1e-12 Score=132.87 Aligned_cols=230 Identities=20% Similarity=0.232 Sum_probs=139.3
Q ss_pred hccceEEEeecCcccccCCCC-CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 504 LKKCYAISLLNSSIHEVSEEF-ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
.+.+..+.++.|.....|... ..+++-.|.+++|.. ..||.+.|-++.-|-+||||+|.+..||- -+.+|.+||+
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I---etIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~Lqt 177 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI---ETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQT 177 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc---ccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhh
Confidence 356777888888888888665 588999999998876 58999999999999999999999998876 6788888888
Q ss_pred h-hh-----c--c-cCCC-CCC-------------CccCCHHHHhccccccccc-cc-cccccccccccccccccccccc
Q 003996 583 F-CR-----E--V-KTPS-TSP-------------NRQESQEELTASSDEISSD-TS-TLLFNEKVVLPNLEALELNAIN 637 (780)
Q Consensus 583 L-~~-----~--l-~~P~-~~l-------------~~~~~l~~L~~~~~~~~~~-~~-~~~~~~~~~l~~L~~L~l~~~~ 637 (780)
| .+ . + .+|+ +++ +.+.+++.| .+...+... ++ ...+..+.++++|+.|+|++|.
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 8 11 1 1 1133 111 111122222 111111100 00 1123334556666666666666
Q ss_pred ccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEec------------------------Cch
Q 003996 638 ADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRL------------------------CKS 693 (780)
Q Consensus 638 l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~------------------------c~~ 693 (780)
++++..+ ++...+|..|+|+.+. |..+| ..+.+|+.|+.|.+.+ .+.
T Consensus 257 iteL~~~------~~~W~~lEtLNlSrNQ-Lt~LP--~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 257 ITELNMT------EGEWENLETLNLSRNQ-LTVLP--DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eeeeecc------HHHHhhhhhhccccch-hccch--HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 6555332 2333344444444433 44443 3334444444444332 122
Q ss_pred hHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcCCC
Q 003996 694 LQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQND 758 (780)
Q Consensus 694 l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~~~ 758 (780)
++-+| ..+..+++|++|.|.. ..|-.+|..++ -+|.|+.|++++.|+|-.+|.-
T Consensus 328 LElVP--------EglcRC~kL~kL~L~~-NrLiTLPeaIH--lL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 328 LELVP--------EGLCRCVKLQKLKLDH-NRLITLPEAIH--LLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cccCc--------hhhhhhHHHHHhcccc-cceeechhhhh--hcCCcceeeccCCcCccCCCCc
Confidence 32222 2456778889988865 56888866554 4899999999999999998843
No 14
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=5.7e-10 Score=106.45 Aligned_cols=142 Identities=19% Similarity=0.263 Sum_probs=92.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCC----CCEEEEEEeCCCCCHH---HHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKL----FDRVVFSEVSQTPDIK---KIQGEIAEKLGLELSDEAEYRRASRLYE 249 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 249 (780)
+++.|+|.+|+||||+++.++.+...... +...+|++.+...... .+...|..+.......... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 57899999999999999999998876543 3456777776544322 3444444443322211111 2333
Q ss_pred HHhcCCeEEEEEeCCCCccC---------ccccCCCCCC--CCCCcEEEEEeCChHH---HhhcCCCceEecCCCCHHHH
Q 003996 250 RLKNENKILVILDNIWKHLD---------LDTVGIPFGN--DHEGCRLLLTARDINV---LLSMGSKDNFLIGNLNEEEA 315 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~~~~---------~~~l~~~l~~--~~~gs~IlvTTR~~~v---~~~~~~~~~~~l~~L~~~e~ 315 (780)
.....+++++|+|++++... +..+...+.. ...+++++||+|.... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34456899999999976532 1112111222 2468999999998766 23444556899999999999
Q ss_pred HHHHHHHc
Q 003996 316 WRLFKIMN 323 (780)
Q Consensus 316 ~~Lf~~~~ 323 (780)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998864
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=4.4e-12 Score=113.51 Aligned_cols=163 Identities=24% Similarity=0.354 Sum_probs=130.0
Q ss_pred ccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh---hhcccC-CCC
Q 003996 517 IHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---CREVKT-PST 592 (780)
Q Consensus 517 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---~~~l~~-P~~ 592 (780)
+..++...+++++..|.++++.. ..+|+. +..+++|.||+++++.++.|+. +|+.|++|+.| .+.+.. |.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl---~~vppn-ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~lpr- 96 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKL---TVVPPN-IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNILPR- 96 (264)
T ss_pred HhhcccccchhhhhhhhcccCce---eecCCc-HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcCcc-
Confidence 34455556788888888988876 467776 5889999999999999999998 89999999988 222322 43
Q ss_pred CCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCcccc
Q 003996 593 SPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIF 672 (780)
Q Consensus 593 ~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~ 672 (780)
.++.+|.|+.|+|.+||+.+ ..+|..+-.+..|+-|+|++.. ...+|
T Consensus 97 ----------------------------gfgs~p~levldltynnl~e----~~lpgnff~m~tlralyl~dnd-fe~lp 143 (264)
T KOG0617|consen 97 ----------------------------GFGSFPALEVLDLTYNNLNE----NSLPGNFFYMTTLRALYLGDND-FEILP 143 (264)
T ss_pred ----------------------------ccCCCchhhhhhcccccccc----ccCCcchhHHHHHHHHHhcCCC-cccCC
Confidence 67889999999999999876 4677667778999999999986 78887
Q ss_pred chhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccC
Q 003996 673 SASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLY 730 (780)
Q Consensus 673 ~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~ 730 (780)
+.+++|.+|+.|.+.+.. +-++|. .++.+.+|++|++.++ .|.-+|
T Consensus 144 --~dvg~lt~lqil~lrdnd-ll~lpk--------eig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 144 --PDVGKLTNLQILSLRDND-LLSLPK--------EIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred --hhhhhhcceeEEeeccCc-hhhCcH--------HHHHHHHHHHHhcccc-eeeecC
Confidence 788999999999998754 445664 5677889999999884 566664
No 16
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=7e-09 Score=109.61 Aligned_cols=262 Identities=14% Similarity=0.067 Sum_probs=148.1
Q ss_pred cccccchHHHHHHHHHHhh-----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALT-----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
...|+|+++.++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 3578999999999988886 2345678899999999999999999887532 2 1222221112222 22333
Q ss_pred HHhCCCC----Cc--hhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhhc--C
Q 003996 229 EKLGLEL----SD--EAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLSM--G 300 (780)
Q Consensus 229 ~~l~~~~----~~--~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~--~ 300 (780)
..++... ++ .-.....+.++..+.+ .+..+|+++..+...+.. .++ +.+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 3333211 00 0001123334444444 456677777655554432 221 244566677764433321 1
Q ss_pred CCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh------c-C--CHHHHHHHHHH
Q 003996 301 SKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALR------N-K--SLHEWKNALRE 371 (780)
Q Consensus 301 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~------~-~--~~~~w~~~l~~ 371 (780)
....+.+++++.++..+++.+.+..... .--.+....|++.|+|.|..+..++..+. + . +.+..+.+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~--- 225 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKA--- 225 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHH---
Confidence 1346789999999999999988763221 12245778999999999977665555331 0 0 11122222
Q ss_pred hcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHH-hhcccC-CCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHH
Q 003996 372 LQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQ-LCSLIG-NSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALV 449 (780)
Q Consensus 372 l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp-~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i 449 (780)
...+...|..++.+ -+..+. ..+.++ ..+..+.+.... |- ........+
T Consensus 226 ----------------l~~l~~~~~~l~~~-~~~~L~al~~~~~~~~~~~~~ia~~l---g~---------~~~~~~~~~ 276 (305)
T TIGR00635 226 ----------------LEMLMIDELGLDEI-DRKLLSVLIEQFQGGPVGLKTLAAAL---GE---------DADTIEDVY 276 (305)
T ss_pred ----------------HHHhCCCCCCCCHH-HHHHHHHHHHHhCCCcccHHHHHHHh---CC---------CcchHHHhh
Confidence 22244557778876 444444 556666 445555553332 11 112333456
Q ss_pred H-HHHHccccccc
Q 003996 450 H-ELRDCCLLLEG 461 (780)
Q Consensus 450 ~-~L~~~~ll~~~ 461 (780)
+ .|++.+|+...
T Consensus 277 e~~Li~~~li~~~ 289 (305)
T TIGR00635 277 EPYLLQIGFLQRT 289 (305)
T ss_pred hHHHHHcCCcccC
Confidence 6 58889999644
No 17
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=1.4e-08 Score=108.10 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=148.4
Q ss_pred CCCcccccchHHHHHHHHHHhh-----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALT-----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
|.....|+||++.++.+..++. ......+.|+|++|+||||+|+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3356789999999998887775 2345678899999999999999999987642 1 1222211 11112233
Q ss_pred HHHHHhCCCC----Cchh--HHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhhc
Q 003996 226 EIAEKLGLEL----SDEA--EYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLSM 299 (780)
Q Consensus 226 ~i~~~l~~~~----~~~~--~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~ 299 (780)
.++..++... ++.. .....+.+...+.. .+..+|+|+..+...+.. .++ +.+-|..||+...+...+
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHH
Confidence 3333332211 0000 01112223333333 445566666544433221 111 134466666654333321
Q ss_pred C--CCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcCCCC
Q 003996 300 G--SKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTPSV 377 (780)
Q Consensus 300 ~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~ 377 (780)
. ....+.+++++.++..+++.+.+..... .--.+.+..|++.|+|.|..+..+...+. .|.... .....
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I 238 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVI 238 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCC
Confidence 1 1346889999999999999988763322 12236788999999999976665555332 111110 00000
Q ss_pred CCcCCCCccccchHHhhhccCChhhHHHHHH-hhcccC-CCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHHH-HHHH
Q 003996 378 VNFEGVPAETYSSIELSFKYLKGEQLKKIFQ-LCSLIG-NSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALVH-ELRD 454 (780)
Q Consensus 378 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp-~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i~-~L~~ 454 (780)
. ...-......+...+..|++. .+..+. ....|+ ..+..+.+.... | .+ . ...++.++ .|++
T Consensus 239 ~--~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g--~~---~----~~~~~~~e~~Li~ 303 (328)
T PRK00080 239 T--KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G--EE---R----DTIEDVYEPYLIQ 303 (328)
T ss_pred C--HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C--CC---c----chHHHHhhHHHHH
Confidence 0 000112233345566778776 455554 667777 567776664442 1 11 1 12233455 6888
Q ss_pred ccccccc
Q 003996 455 CCLLLEG 461 (780)
Q Consensus 455 ~~ll~~~ 461 (780)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 8999754
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.02 E-value=1.7e-11 Score=129.99 Aligned_cols=184 Identities=17% Similarity=0.225 Sum_probs=103.1
Q ss_pred hccceEEEeecCcccccCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc--------------
Q 003996 504 LKKCYAISLLNSSIHEVSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ-------------- 568 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~-------------- 568 (780)
.+++.|+++..|....+... .+++.||++.+..|... +.-||+++| +++-|.+||||+|.+..
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK-nsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK-NSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc-cCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 35677777777665444332 35677777777655542 134666654 36666666666665543
Q ss_pred ---------ccccccCCChhHHHh---hhcccC-CC--------CCCCccC------CHHHH--hccccccccccc----
Q 003996 569 ---------LRSLTLGKLPKVTRF---CREVKT-PS--------TSPNRQE------SQEEL--TASSDEISSDTS---- 615 (780)
Q Consensus 569 ---------L~~L~i~~L~~L~~L---~~~l~~-P~--------~~l~~~~------~l~~L--~~~~~~~~~~~~---- 615 (780)
.|.--..+|+.|-+| .+.++. |. +.+..+. +|..| +.+...+...+.
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 332113456666666 223333 43 1111111 11111 011111111111
Q ss_pred ccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhH
Q 003996 616 TLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQ 695 (780)
Q Consensus 616 ~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~ 695 (780)
.+++.++..+.||..++++.|+|..++. -+-.+.+|+.|+|+++. ++.+. -..+.+.+|++|+++. +.++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPe------cly~l~~LrrLNLS~N~-iteL~--~~~~~W~~lEtLNlSr-NQLt 281 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLPIVPE------CLYKLRNLRRLNLSGNK-ITELN--MTEGEWENLETLNLSR-NQLT 281 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCCcchH------HHhhhhhhheeccCcCc-eeeee--ccHHHHhhhhhhcccc-chhc
Confidence 2456677788888888888888865443 36677889999998886 77664 3567788888888885 5566
Q ss_pred Hhhc
Q 003996 696 EIIS 699 (780)
Q Consensus 696 ~l~~ 699 (780)
.+|.
T Consensus 282 ~LP~ 285 (1255)
T KOG0444|consen 282 VLPD 285 (1255)
T ss_pred cchH
Confidence 6654
No 19
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.02 E-value=9.2e-09 Score=121.32 Aligned_cols=308 Identities=16% Similarity=0.173 Sum_probs=182.1
Q ss_pred cccchHHHHHHHHHHhh---cCCeEEEEEEeCCCChHHHHHHHHHHHhhcc-CCCCEEEEEEeCCCC---CHHHHHHHHH
Q 003996 156 AFESRVSTLKSIQNALT---DANVSIIGVYGMGGIGKTTLVKEFVRQASEN-KLFDRVVFSEVSQTP---DIKKIQGEIA 228 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~---~~~~i~~~i~ 228 (780)
.++||+.+++.|.+.+. .....++.+.|..|+|||+++++|......+ ..|-...+-...... ...+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999999887 4556799999999999999999999987654 112111111111111 2233344444
Q ss_pred HHh-------------------CCCCCc-----------------------hhHHH-----HHHHHHHHHhcCCeEEEEE
Q 003996 229 EKL-------------------GLELSD-----------------------EAEYR-----RASRLYERLKNENKILVIL 261 (780)
Q Consensus 229 ~~l-------------------~~~~~~-----------------------~~~~~-----~~~~l~~~l~~~k~~LlVl 261 (780)
.++ |..... ..... ....+.......++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 433 211000 00001 1223333344557999999
Q ss_pred eCCCCcc--Cccc---cCCCCCC-CCCCcEEE--EEeCCh--HHHhhcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcc
Q 003996 262 DNIWKHL--DLDT---VGIPFGN-DHEGCRLL--LTARDI--NVLLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCK 331 (780)
Q Consensus 262 Ddv~~~~--~~~~---l~~~l~~-~~~gs~Il--vTTR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 331 (780)
||+...+ .++- +...... .-.-..|. .|.+.. .+.........+.|.||+..+...+.....+.....
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 9994332 1111 1111100 00011222 233322 222233445689999999999999999988753322
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHH
Q 003996 332 FKSTAINVAQACGGLPIALTTVARALRNK-------SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLK 404 (780)
Q Consensus 332 l~~~~~~I~~~c~GlPLai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 404 (780)
..+....|+++..|+|+.+..+-..+... +...|..-...+.. .+..+.+...+....+.||.. .+
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-HH
Confidence 23678899999999999999999999842 33344332222111 111233566788999999998 89
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHHHHHHHcccccc-----cCC-CC---eEEEcHHHHH
Q 003996 405 KIFQLCSLIGNSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALVHELRDCCLLLE-----GDC-NE---TFSMHDVVCD 475 (780)
Q Consensus 405 ~cf~~~s~fp~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~-----~~~-~~---~~~mHdlv~d 475 (780)
+.+...|++...|+.+.|...|-. -.......+++.|....++.. .+. .. |-..||.|++
T Consensus 312 ~Vl~~AA~iG~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 312 EVLKAAACIGNRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHHHhCccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 999999999999999988777631 122233344555555554431 111 11 2256888888
Q ss_pred HHHHHhcc
Q 003996 476 VAVSIACR 483 (780)
Q Consensus 476 ~a~~~~~~ 483 (780)
.|-....+
T Consensus 381 aaY~~i~~ 388 (849)
T COG3899 381 AAYNLIPE 388 (849)
T ss_pred HHhccCch
Confidence 87766543
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.81 E-value=2.1e-09 Score=113.99 Aligned_cols=120 Identities=21% Similarity=0.214 Sum_probs=81.9
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
.+.+++.|+.|++++|.+..+... .....++|+.|+|+++. ++.++ ..++..|..|+.|.|++ +.++.+-..
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d-----~WsftqkL~~LdLs~N~-i~~l~-~~sf~~L~~Le~LnLs~-Nsi~~l~e~ 359 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHID-----SWSFTQKLKELDLSSNR-ITRLD-EGSFRVLSQLEELNLSH-NSIDHLAEG 359 (873)
T ss_pred cccccchhhhhccchhhhheeecc-----hhhhcccceeEeccccc-cccCC-hhHHHHHHHhhhhcccc-cchHHHHhh
Confidence 356788899999998888766432 13345899999999886 88885 35788899999999986 445544321
Q ss_pred C--------------------cccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 701 D--------------------RTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 701 ~--------------------~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
. -+|.......+|+|++|.+.|+ +++.++.... ..+++||+|++.+.+
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNA 427 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCc
Confidence 0 0122123445778888888774 5777765443 457788888877776
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.79 E-value=6.3e-09 Score=110.43 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=69.7
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
.+..+.++++|+|..|++..+-.| |+-.|++|+.|+++++. +..+ .+......++|+.|+|+. +.++.++..
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g-----~lfgLt~L~~L~lS~Na-I~ri-h~d~WsftqkL~~LdLs~-N~i~~l~~~ 335 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEG-----WLFGLTSLEQLDLSYNA-IQRI-HIDSWSFTQKLKELDLSS-NRITRLDEG 335 (873)
T ss_pred ceeeecccceeecccchhhhhhcc-----cccccchhhhhccchhh-hhee-ecchhhhcccceeEeccc-cccccCChh
Confidence 345567777777877777776665 66667778888877765 4444 334555667777777773 445555432
Q ss_pred Ccc-----------cc-c-----ccccccCcccEEeccCCCCcccc-CC-CCCccCCcccceeecccCCCCCCcC
Q 003996 701 DRT-----------DQ-V-----TAYFVFPRVTTLKLDGLPELRCL-YP-GMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 701 ~~~-----------~~-~-----~~~~~fp~L~~L~l~~~~~L~~~-~~-~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
.-. .. . ..+.++.+|++|+|..+. +... .. ......+|+|++|.+.|.. |+.+|
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~ 408 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIP 408 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCce-eeecc
Confidence 100 00 0 123344556666665532 1111 00 1111247777777766553 66555
No 22
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=8.1e-08 Score=96.31 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=96.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..+.+.|+|++|+|||+|++.+++....+ ...+.|+++.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--
Confidence 34678999999999999999999987654 3355677654210 000 11122222
Q ss_pred CeEEEEEeCCCCc---cCccc-cCCCCCC-CCCCcEEEEE-eCC---------hHHHhhcCCCceEecCCCCHHHHHHHH
Q 003996 255 NKILVILDNIWKH---LDLDT-VGIPFGN-DHEGCRLLLT-ARD---------INVLLSMGSKDNFLIGNLNEEEAWRLF 319 (780)
Q Consensus 255 k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~IlvT-TR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf 319 (780)
+.-+||+||+|.. ..|+. +...+.. ...|..+||+ ++. +.+...+.....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 2359999999864 34442 2111111 1235555554 443 344455555678999999999999999
Q ss_pred HHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 320 KIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
.+.+....- .--+++.+-|++.+.|..-++..+-..|
T Consensus 171 ~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 988863221 1124678889999988777665554433
No 23
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.71 E-value=3e-07 Score=94.62 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=132.6
Q ss_pred CcccccchHHHH---HHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 153 GYEAFESRVSTL---KSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 153 ~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
....++|.+.-+ .-|..++..+.+....+||++|+||||||+.+....... | ..++...+-.+-++++++
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREIIE 94 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHHH
Confidence 445566665544 335556667888889999999999999999999876543 3 333333222222222222
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-ccccCCCCCCCCCCcEEEE--EeCChHHH---hhcCCCc
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-LDTVGIPFGNDHEGCRLLL--TARDINVL---LSMGSKD 303 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~Ilv--TTR~~~v~---~~~~~~~ 303 (780)
.-.+....+++.+|++|.|+.-.. -++. .+|...+|.-|+| ||.|+... .......
T Consensus 95 ----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~--lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 95 ----------------EARKNRLLGRRTILFLDEIHRFNKAQQDA--LLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred ----------------HHHHHHhcCCceEEEEehhhhcChhhhhh--hhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 222222335889999999976532 2222 2344566777777 56654321 1334456
Q ss_pred eEecCCCCHHHHHHHHHHHcCCCC------CCcchHHHHHHHHHHhCCChHHHHHHHHHHh---cC----CHHHHHHHHH
Q 003996 304 NFLIGNLNEEEAWRLFKIMNGDDV------ENCKFKSTAINVAQACGGLPIALTTVARALR---NK----SLHEWKNALR 370 (780)
Q Consensus 304 ~~~l~~L~~~e~~~Lf~~~~~~~~------~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~---~~----~~~~w~~~l~ 370 (780)
++.+++|+.+|..+++.+.+.... ...--+++...|++.++|--.++-....... .. ..+..+.+++
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~ 236 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQ 236 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHh
Confidence 899999999999999999543111 1111235677888999987655444333332 11 2344444444
Q ss_pred HhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcccC
Q 003996 371 ELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIG 414 (780)
Q Consensus 371 ~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp 414 (780)
+-.... ....+...++..++.-|...=+++ ...+.++-++-
T Consensus 237 ~~~~~~-Dk~gD~hYdliSA~hKSvRGSD~d--AALyylARmi~ 277 (436)
T COG2256 237 RRSARF-DKDGDAHYDLISALHKSVRGSDPD--AALYYLARMIE 277 (436)
T ss_pred hhhhcc-CCCcchHHHHHHHHHHhhccCCcC--HHHHHHHHHHh
Confidence 311111 111122345667777777666665 33444444443
No 24
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=1.8e-07 Score=102.69 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=108.2
Q ss_pred CcccccchHHHHHH---HHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 153 GYEAFESRVSTLKS---IQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 153 ~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
....++|++..+.. +.+++.......+.++|++|+||||+|+.+++..... | +.++....-.+-++++.+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHHH
Confidence 45578898888666 7777777777788999999999999999999876432 2 222221111111122221
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE--EeCChHHH---hhcCCC
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL--TARDINVL---LSMGSK 302 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv--TTR~~~v~---~~~~~~ 302 (780)
........+++.+|++|+++... ..+.+...+ ..|..++| ||.+.... ......
T Consensus 83 ----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 ----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred ----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhccc
Confidence 11111223467899999998653 222232222 12444444 34433211 122223
Q ss_pred ceEecCCCCHHHHHHHHHHHcCCCC-CC-cchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 303 DNFLIGNLNEEEAWRLFKIMNGDDV-EN-CKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 303 ~~~~l~~L~~~e~~~Lf~~~~~~~~-~~-~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
..+.+.+++.++...++.+.+.... .. .-..+....|++.|+|.+..+..+....
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5789999999999999998754211 11 2234677889999999998776555443
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=1.4e-06 Score=98.35 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=123.3
Q ss_pred cccccchHHHHHHHHHHhh----cCC-eEEEEEEeCCCChHHHHHHHHHHHhhcc---CCCC--EEEEEEeCCCCCHHHH
Q 003996 154 YEAFESRVSTLKSIQNALT----DAN-VSIIGVYGMGGIGKTTLVKEFVRQASEN---KLFD--RVVFSEVSQTPDIKKI 223 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~----~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~i 223 (780)
+..+.||++++++|...|. ..+ ..++.|+|++|+|||+.++.|.+..... .... .+++|+.....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3567899999999988876 222 3577899999999999999999876431 1122 3677777777788889
Q ss_pred HHHHHHHhCCCCC--chhHHHHHHHHHHHHhc--CCeEEEEEeCCCCccC-ccc-cCCCCC-CCCCCcEEEE--EeCChH
Q 003996 224 QGEIAEKLGLELS--DEAEYRRASRLYERLKN--ENKILVILDNIWKHLD-LDT-VGIPFG-NDHEGCRLLL--TARDIN 294 (780)
Q Consensus 224 ~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-~~~-l~~~l~-~~~~gs~Ilv--TTR~~~ 294 (780)
+..|.+++....+ ..+.......++..+.. +...+||||+++.... -++ +...+. ....+++|+| +|...+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 9999988843322 22334455666666532 2346899999975421 011 110010 1123455444 333211
Q ss_pred H--------HhhcCCCceEecCCCCHHHHHHHHHHHcCCC---CCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 003996 295 V--------LLSMGSKDNFLIGNLNEEEAWRLFKIMNGDD---VENCKFKSTAINVAQACGGLPIALTTVARALR 358 (780)
Q Consensus 295 v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (780)
. ...++ ...+...|++.++..+++..++... ..+..++-+|+.++...|-.-.|+.++-.+..
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 11222 2246679999999999999987632 22333344444444444555666666655543
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.63 E-value=2.5e-07 Score=93.13 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchh
Q 003996 160 RVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEA 239 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 239 (780)
.+..++.+.+++.......+.|+|++|+|||+||+.+++..... ....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45677778777665667789999999999999999999887543 33456665543211 00
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCcc---Ccc-ccCCCCCC-CCCCcEEEEEeCChH---------HHhhcCCCceE
Q 003996 240 EYRRASRLYERLKNENKILVILDNIWKHL---DLD-TVGIPFGN-DHEGCRLLLTARDIN---------VLLSMGSKDNF 305 (780)
Q Consensus 240 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~IlvTTR~~~---------v~~~~~~~~~~ 305 (780)
..+...+.+ .-+||+||++... .|. .+...+.. ...+.++|+||+... ....+.....+
T Consensus 82 -----~~~~~~~~~--~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLEQ--ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhccc--CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 011122222 3489999997653 222 22222211 122347888887532 12223234578
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 306 LIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 306 ~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
++.+++.++...++...+..... .--.+..+.|++.+.|+|..+..+...+
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999875431111 1123566788888999988777665443
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.59 E-value=1.2e-07 Score=110.00 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=114.8
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
.+..++.+.+.+|.+..+|... +++|++|.+.+|.. ..+|..+. .+|+.|+|++|.+..++. .+. .+|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L---tsLP~~l~---~~L~~L~Ls~N~L~~LP~-~l~--s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL---TSIPATLP---DTIQEMELSINRITELPE-RLP--SALQS 266 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc---ccCChhhh---ccccEEECcCCccCcCCh-hHh--CCCCE
Confidence 3457888888888887777543 46888888887765 35666543 468888888888877654 222 24454
Q ss_pred h---hhcccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCcc
Q 003996 583 F---CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLT 658 (780)
Q Consensus 583 L---~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~ 658 (780)
| ++.+.. |.. ++ .+|+.|.-+...+. .++.. ..++|+.|++++|+++.++. .+ .++|+
T Consensus 267 L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt-----~LP~~--lp~sL~~L~Ls~N~Lt~LP~------~l--~~sL~ 328 (754)
T PRK15370 267 LDLFHNKISCLPEN-LP--EELRYLSVYDNSIR-----TLPAH--LPSGITHLNVQSNSLTALPE------TL--PPGLK 328 (754)
T ss_pred EECcCCccCccccc-cC--CCCcEEECCCCccc-----cCccc--chhhHHHHHhcCCccccCCc------cc--cccce
Confidence 4 222222 321 00 01111100000000 00001 12356667777766654322 11 25788
Q ss_pred EEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCC
Q 003996 659 RLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW 738 (780)
Q Consensus 659 ~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 738 (780)
.|++++|. ++.+| ..+ .++|+.|++++|. +..++. ...++|++|+|++| +|..+|... .
T Consensus 329 ~L~Ls~N~-Lt~LP--~~l--~~sL~~L~Ls~N~-L~~LP~----------~lp~~L~~LdLs~N-~Lt~LP~~l----~ 387 (754)
T PRK15370 329 TLEAGENA-LTSLP--ASL--PPELQVLDVSKNQ-ITVLPE----------TLPPTITTLDVSRN-ALTNLPENL----P 387 (754)
T ss_pred eccccCCc-cccCC--hhh--cCcccEEECCCCC-CCcCCh----------hhcCCcCEEECCCC-cCCCCCHhH----H
Confidence 88888875 66665 222 2688888888653 554442 12467888888886 466664321 2
Q ss_pred cccceeecccCCCCCCcC
Q 003996 739 PALKNLVACNCDKITLSQ 756 (780)
Q Consensus 739 p~L~~L~i~~C~~L~~~~ 756 (780)
++|+.|++++|. |+.+|
T Consensus 388 ~sL~~LdLs~N~-L~~LP 404 (754)
T PRK15370 388 AALQIMQASRNN-LVRLP 404 (754)
T ss_pred HHHHHHhhccCC-cccCc
Confidence 467888887764 66655
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=98.58 E-value=3.4e-06 Score=94.52 Aligned_cols=251 Identities=15% Similarity=0.112 Sum_probs=140.1
Q ss_pred CCCcccccchHHHHHHHHHHhhc----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTD----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++-++.+...+.. .+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHH
Confidence 33456789999999999998863 2267899999999999999999999874 33 3334444433322 2223
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------ccccCCCCCCCCCCcEEEEEeCChH-HHh--
Q 003996 227 IAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD------LDTVGIPFGNDHEGCRLLLTARDIN-VLL-- 297 (780)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~IlvTTR~~~-v~~-- 297 (780)
++....... .+.+.++-+||+|+++.... +..+...+. ..+..||+|+.+.. ...
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 322211100 01112568999999976522 222222221 12344666664322 111
Q ss_pred hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhc-C---CHHHHHHHHHHhc
Q 003996 298 SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRN-K---SLHEWKNALRELQ 373 (780)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~-~---~~~~w~~~l~~l~ 373 (780)
.-.....+.+.+++.++....+.+.+......- -.++...|++.++|....+......+.. . +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--- 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--- 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---
Confidence 112345788999999999999888764222111 1467889999999977766554444442 2 2333222211
Q ss_pred CCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcccCCCCCHHHHHHHHHhcCcccCccchHH
Q 003996 374 TPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIGNSFCLIDLLRYSMGLGIFHRVNKMED 440 (780)
Q Consensus 374 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~Li~~W~a~g~i~~~~~~~~ 440 (780)
. .....++.++..-+..=....+...+ +-..++.+ .+-.|+.+.+.......++
T Consensus 224 ----~---d~~~~if~~l~~i~~~k~~~~a~~~~-----~~~~~~~~-~i~~~l~en~~~~~~~~~~ 277 (482)
T PRK04195 224 ----R---DREESIFDALDAVFKARNADQALEAS-----YDVDEDPD-DLIEWIDENIPKEYDDPED 277 (482)
T ss_pred ----C---CCCCCHHHHHHHHHCCCCHHHHHHHH-----HcccCCHH-HHHHHHHhccccccCCHHH
Confidence 1 11345566666555421121122221 11334444 4667999998765443333
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.57 E-value=3.8e-08 Score=110.29 Aligned_cols=203 Identities=22% Similarity=0.299 Sum_probs=105.7
Q ss_pred hccceEEEeecCcccccCCC-CCCCCccEEEeecCCCCC--------------------CcccchHHHhcCCcceEEEec
Q 003996 504 LKKCYAISLLNSSIHEVSEE-FECPQLEFLYIDPQITFS--------------------EVNIPDNFFKGMKKLRVVDLT 562 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~--------------------~~~i~~~~~~~l~~LrvLdL~ 562 (780)
+.+..++.++.+....+|.- ..|.+|..+.+..+.... -..+|+ +..++++||+|||+
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeeh
Confidence 45566666666666555522 245666665554443210 012232 23557777777777
Q ss_pred CCCcCcccccccCCChh-HHHh---hhcccC-CCCCCCccCCHHHHhccccccccccccccccccccccccccccccccc
Q 003996 563 RIEFGQLRSLTLGKLPK-VTRF---CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAIN 637 (780)
Q Consensus 563 ~~~~~~L~~L~i~~L~~-L~~L---~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 637 (780)
.|++..++.+.+..+.. |+.| +..+.. |...-.....+++|.-....+. ...++.+.++.+|+.|+|++|.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt----d~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT----DSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc----ccchhhhccccceeeeeecccc
Confidence 77776666543333333 4444 222222 3210001111333311111111 1234556677888888888877
Q ss_pred ccccccccCCCCccccccCccEEeeccCccCcccc--------------------chhhHhhccCCcEEEEecCchhHHh
Q 003996 638 ADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIF--------------------SASTIQSLEQLQHLEIRLCKSLQEI 697 (780)
Q Consensus 638 l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~--------------------~~~~l~~L~~L~~L~l~~c~~l~~l 697 (780)
|..++.. .+.+|..|+.|+|+|+. |+.+| .+|.+.+++.|+.++++ |+.++.+
T Consensus 395 L~~fpas-----~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 395 LNSFPAS-----KLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred cccCCHH-----HHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhh
Confidence 7644322 24566777777777765 66555 22455667777777776 6767665
Q ss_pred hccCcccccccccccCcccEEeccCCCC
Q 003996 698 ISEDRTDQVTAYFVFPRVTTLKLDGLPE 725 (780)
Q Consensus 698 ~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 725 (780)
...... .-|+|++|+++|+++
T Consensus 468 ~l~~~~-------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 468 TLPEAL-------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhC-------CCcccceeeccCCcc
Confidence 432111 116777777777765
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.56 E-value=1.2e-08 Score=103.76 Aligned_cols=223 Identities=18% Similarity=0.151 Sum_probs=128.2
Q ss_pred EEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh----
Q 003996 510 ISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---- 583 (780)
Q Consensus 510 lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---- 583 (780)
+.+..|.++.+|.. .+++++-+|.++.+.. ..+|+++ ..+++|..||+|+|.++.|+| .+|+| +|+.|
T Consensus 233 lh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl---ke~Pde~-clLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 233 LHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL---KEVPDEI-CLLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEG 306 (565)
T ss_pred HHhcccHHHhhHHHHhcccccceeeecccccc---ccCchHH-HHhhhhhhhcccCCccccCCc-ccccc-eeeehhhcC
Confidence 34445555555533 2577888888888876 5788874 789999999999999999999 89999 87766
Q ss_pred ---------------------------hhcccCCC----C-------CCCc---cCCHHHH--------------hccc-
Q 003996 584 ---------------------------CREVKTPS----T-------SPNR---QESQEEL--------------TASS- 607 (780)
Q Consensus 584 ---------------------------~~~l~~P~----~-------~l~~---~~~l~~L--------------~~~~- 607 (780)
|..+..|. + .++. ..+.+.| .+..
T Consensus 307 NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~ 386 (565)
T KOG0472|consen 307 NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK 386 (565)
T ss_pred CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh
Confidence 00111110 0 0000 0001111 0000
Q ss_pred -cccc-cccc----ccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhcc
Q 003996 608 -DEIS-SDTS----TLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLE 681 (780)
Q Consensus 608 -~~~~-~~~~----~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~ 681 (780)
..+. .+.+ ...+..+..+..+.+.-+..++... -.|-.++.+++|..|+|++.. |.++| ..++.+.
T Consensus 387 ~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-----fv~~~l~~l~kLt~L~L~NN~-Ln~LP--~e~~~lv 458 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-----FVPLELSQLQKLTFLDLSNNL-LNDLP--EEMGSLV 458 (565)
T ss_pred hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-----cchHHHHhhhcceeeecccch-hhhcc--hhhhhhh
Confidence 0000 0000 0111111122222222222222211 122336678888888888876 77776 5677777
Q ss_pred CCcEEEEecCchhHHhhccCcc----------cc------cccccccCcccEEeccCCCCccccCCCCCccCCcccceee
Q 003996 682 QLQHLEIRLCKSLQEIISEDRT----------DQ------VTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLV 745 (780)
Q Consensus 682 ~L~~L~l~~c~~l~~l~~~~~~----------~~------~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~ 745 (780)
.|+.|+|+. +.+..+|..-++ +. ...++.+.+|.+|+|.++ .+..+|+ ..|+|.+|++|.
T Consensus 459 ~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp--~LgnmtnL~hLe 534 (565)
T KOG0472|consen 459 RLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPP--ILGNMTNLRHLE 534 (565)
T ss_pred hhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhhCCh--hhccccceeEEE
Confidence 888888874 345544432111 00 023678899999999875 5889954 458999999999
Q ss_pred cccCC
Q 003996 746 ACNCD 750 (780)
Q Consensus 746 i~~C~ 750 (780)
+.|.|
T Consensus 535 L~gNp 539 (565)
T KOG0472|consen 535 LDGNP 539 (565)
T ss_pred ecCCc
Confidence 99988
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.55 E-value=1.2e-06 Score=94.14 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=110.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCC-EEEEEEeCCCCCH--HHHHH--H
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFD-RVVFSEVSQTPDI--KKIQG--E 226 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~i~~--~ 226 (780)
.....++|++..++.+.+++..+..+.+.++|++|+||||+|+.+.+..... .+. ..+.++++...+. ..+.. .
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcc
Confidence 3456788999999999999887766678899999999999999999876532 122 2344444321100 00000 0
Q ss_pred HHHHhCCC-CCchhHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccC--ccccCCCCCCCCCCcEEEEEeCChH-HHh
Q 003996 227 IAEKLGLE-LSDEAEYRRASRLYERLKN-----ENKILVILDNIWKHLD--LDTVGIPFGNDHEGCRLLLTARDIN-VLL 297 (780)
Q Consensus 227 i~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~IlvTTR~~~-v~~ 297 (780)
....++.. ............+.+.... ..+-+||+||+..... ...+...+......+++|+||.+.. +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 0000111122222222211 2345899999965421 2222222222233567777775432 222
Q ss_pred hc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 298 SM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 298 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
.+ .....+.+.+++.++...++.+.+...... --.+.+..+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 11 223478889999999999998876432211 1245778899999887765544
No 32
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=1.7e-07 Score=84.88 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=80.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
.+++.|.|+.|+||||++++++++.. ....+++++............ +....+.+.... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~~~-~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELIKP-G 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhhcc-C
Confidence 46899999999999999999998876 234567776655322111000 011222222222 5
Q ss_pred eEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhh------cCCCceEecCCCCHHHH
Q 003996 256 KILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLS------MGSKDNFLIGNLNEEEA 315 (780)
Q Consensus 256 ~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~------~~~~~~~~l~~L~~~e~ 315 (780)
+.+|++|++....+|......+.+.....+|++|+.+...... .+....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6899999999998888776666665567899999987665531 22344788999998763
No 33
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.2e-06 Score=86.90 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=130.2
Q ss_pred cccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003996 156 AFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL 231 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 231 (780)
.+.+|+.+++++...|. +....-+.|+|.+|+|||+.++.+.+..+....=..+++|+.-...+..+++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37899999999988876 33344489999999999999999999887642222279999999999999999999999
Q ss_pred C-CCCCchhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccCc--cccCCCCCC-CCCCcEE--EEEeCChHHHh-------
Q 003996 232 G-LELSDEAEYRRASRLYERLKN-ENKILVILDNIWKHLDL--DTVGIPFGN-DHEGCRL--LLTARDINVLL------- 297 (780)
Q Consensus 232 ~-~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs~I--lvTTR~~~v~~------- 297 (780)
+ .+....+..+....+.+.+.. ++.+++|||++.....- +.+..-+.. ....++| |..+-+.....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 5 344456666777788888865 57899999999755322 111111111 1124443 33343333222
Q ss_pred -hcCCCceEecCCCCHHHHHHHHHHHcC----CCCCCcc-hHHHHHHHHHHhCCChHHHHHHHHH
Q 003996 298 -SMGSKDNFLIGNLNEEEAWRLFKIMNG----DDVENCK-FKSTAINVAQACGGLPIALTTVARA 356 (780)
Q Consensus 298 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~-l~~~~~~I~~~c~GlPLai~~~~~~ 356 (780)
.++.. .+..+|-+.+|-...+..++. ...-++. ++-++...++..|-.-.|+..+-.+
T Consensus 178 s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 178 SSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 23333 478899999999999998874 1222333 3333333344444445555554433
No 34
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.6e-06 Score=91.68 Aligned_cols=180 Identities=10% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKL-------------------FDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------F~~~~w 211 (780)
.....++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++....... +....+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 3456788999999999998886554 56789999999999999999987642211 111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCR 285 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 285 (780)
+..+....+.+ ...+.+.+. .+++-++|+|+++... .++.+...+.......+
T Consensus 93 ~~~~~~~~v~~---------------------ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 93 IDAASRTKVEE---------------------MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred ecccccCCHHH---------------------HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22211111111 222222221 1345699999997663 34444333333344566
Q ss_pred EEEEeCCh-HHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 286 LLLTARDI-NVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 286 IlvTTR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
+|++|.+. .+... .+....+++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|..+...
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66666543 33322 222358899999999999988876643221 112356778999999988654433
No 35
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=2.4e-06 Score=96.23 Aligned_cols=189 Identities=13% Similarity=0.184 Sum_probs=115.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC-------------------CCCEEE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK-------------------LFDRVV 210 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~F~~~~ 210 (780)
|.....++|.+..++.|.+++..+.+ ..+.++|+.|+||||+|+.+.+...... .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 33556789999999999999986654 5668999999999999999988764321 122234
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv 288 (780)
+++.+....+.++ +++++.+ ......++.-++|||+++... .++.+...+-......++|+
T Consensus 92 EIDAas~rgVDdI-ReLIe~a----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 92 EMDAASNRGVDEM-AALLERA----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred EecccccccHHHH-HHHHHHH----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 4433332222221 1222211 111112345688999998663 35544433333344677777
Q ss_pred EeCChH-HHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHH
Q 003996 289 TARDIN-VLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP-IALTTVARAL 357 (780)
Q Consensus 289 TTR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~L 357 (780)
||++.. +... ...-..+.+.+++.++..+.+.+.+...... --.+....|++.++|.. -|+..+-..+
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777643 3222 2233578999999999999998877533211 12457778999998865 4555544333
No 36
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.49 E-value=6e-07 Score=81.74 Aligned_cols=116 Identities=24% Similarity=0.332 Sum_probs=80.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc---CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-hhHHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN---KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-EAEYRRASRLYER 250 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 250 (780)
+.+.+.|+|++|+|||++++.+.+..... ..-..++|+.+....+...+...|+.+++..... .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35788999999999999999999976431 0124577999988889999999999999987766 4556666888888
Q ss_pred HhcCCeEEEEEeCCCCc-c--CccccCCCCCCCCCCcEEEEEeCC
Q 003996 251 LKNENKILVILDNIWKH-L--DLDTVGIPFGNDHEGCRLLLTARD 292 (780)
Q Consensus 251 l~~~k~~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~IlvTTR~ 292 (780)
+...+..+||+|+++.. . .++.+.. +.+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 88766789999999654 2 1222211 112 556677777654
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.6e-06 Score=99.40 Aligned_cols=185 Identities=14% Similarity=0.184 Sum_probs=112.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeEE-EEEEeCCCChHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVSI-IGVYGMGGIGKTTLVKEFVRQASENKL-------------------FDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------F~~~~w 211 (780)
.....++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+++....... |..+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 355678999999999999988766654 589999999999999999987653211 111233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvT 289 (780)
+..+....+..+ ++|.+.+ ...-..+++-++|+|+++.. ...+.+...+-......++|++
T Consensus 93 idAas~~kVDdI-ReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 93 VDAASRTKVDDT-RELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred eccccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 322211222221 2222221 11111246679999999765 2334333333222335555554
Q ss_pred e-CChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 290 A-RDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 290 T-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
| ....+... ......+++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|.-+..+.
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 44444432 223358999999999999999887643211 1224577889999999886554443
No 38
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=4.5e-06 Score=88.25 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=113.8
Q ss_pred ccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhh----ccCCCCEEEEEEe-CCCCCHHHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQAS----ENKLFDRVVFSEV-SQTPDIKKIQGEIA 228 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~i~~~i~ 228 (780)
..++|.+...+.+.+++..+.. ..+.++|+.|+||||+|+.+++..- ...|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3567888889999999886554 5678999999999999999998653 2346676666552 333344442 3333
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCC--CccCccccCCCCCCCCCCcEEEEEeCChHHH-hh-cCCCce
Q 003996 229 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIW--KHLDLDTVGIPFGNDHEGCRLLLTARDINVL-LS-MGSKDN 304 (780)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~~-~~~~~~ 304 (780)
+.+....- .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. .. ......
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322110 1245566677664 3345666655665555688888888765422 21 223458
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 305 FLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 305 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
+.+.++++++....+.+.... . -.+.+..++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHH
Confidence 899999999998888765431 1 12346688899999887554
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.44 E-value=1.6e-06 Score=100.12 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=56.5
Q ss_pred cccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCccccc
Q 003996 627 NLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQV 706 (780)
Q Consensus 627 ~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 706 (780)
+|++|+|++|+++.++. +| ++|+.|+++++. +..+|.. .++|+.|+++++ .++.++.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~---lp------~~L~~L~Ls~N~-L~~LP~l-----~~~L~~LdLs~N-~Lt~LP~------- 399 (788)
T PRK15387 343 GLQELSVSDNQLASLPT---LP------SELYKLWAYNNR-LTSLPAL-----PSGLKELIVSGN-RLTSLPV------- 399 (788)
T ss_pred ccceEecCCCccCCCCC---CC------cccceehhhccc-cccCccc-----ccccceEEecCC-cccCCCC-------
Confidence 57777777776664432 12 456667776654 5555421 246777777753 3554442
Q ss_pred ccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 707 TAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 707 ~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
.+++|+.|+++++ .+..+|. .+++|+.|+++++. |+.+|
T Consensus 400 ----l~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~Nq-Lt~LP 438 (788)
T PRK15387 400 ----LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLP 438 (788)
T ss_pred ----cccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccCc-ccccC
Confidence 2457888888886 3666642 12456777766644 56565
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.2e-06 Score=81.48 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc
Q 003996 158 ESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD 237 (780)
Q Consensus 158 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 237 (780)
.|++..+..+...+.....+.+.|+|++|+||||+++.+++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3788889999998877667889999999999999999999987532 2346666665533322211111100
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEEeCCCCc-----cCccccCCCCCC---CCCCcEEEEEeCChH
Q 003996 238 EAEYRRASRLYERLKNENKILVILDNIWKH-----LDLDTVGIPFGN---DHEGCRLLLTARDIN 294 (780)
Q Consensus 238 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~IlvTTR~~~ 294 (780)
............++.++|+||++.. ..+..+...+.. ...+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111111236789999999854 112221112111 135778888887543
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.42 E-value=5.8e-06 Score=88.09 Aligned_cols=184 Identities=11% Similarity=0.099 Sum_probs=107.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe--CCCCCHHHHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV--SQTPDIKKIQGEIAEK 230 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~ 230 (780)
....++|+++.++.+..++.....+.+.++|++|+||||+|+.+++...... +. ..++.. +....... ..+.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~-~~~~i~~ 91 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDV-IRNKIKE 91 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHH-HHHHHHH
Confidence 4456889999999999998876667789999999999999999998864432 21 112222 22222111 1111111
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChH-HHh-hcCCCceEe
Q 003996 231 LGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDIN-VLL-SMGSKDNFL 306 (780)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~-~~~~~~~~~ 306 (780)
+....+ .....+-++++|+++... ....+...+......+++|+++.... ... .......+.
T Consensus 92 ~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 92 FARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 100000 001235689999986542 12223222222233466777664321 111 112234688
Q ss_pred cCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 307 IGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 307 l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
+.+++.++....+.+.+...... --.+.+..+++.++|.+.-+....
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999988877532211 124577889999999887644433
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.4e-06 Score=92.19 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=109.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCE------------------EEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDR------------------VVFSE 213 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~------------------~~wv~ 213 (780)
....++|.+...+.|..++..+.. ..+.++|++|+||||+|+.+++.......+.. +.+++
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 455788999999999888886665 45699999999999999999988754222222 22232
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeC
Q 003996 214 VSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTAR 291 (780)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR 291 (780)
.+....+.. .+++.+.+ ...-..+++-++|+|+++... .++.+...+......+.+|++|.
T Consensus 92 ~~~~~~vd~-iR~l~~~~----------------~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 92 AASNNSVED-VRDLREKV----------------LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred ccccCCHHH-HHHHHHHH----------------hhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 221111111 11111111 110011356799999997552 34444444433334455555554
Q ss_pred -ChHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 292 -DINVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 292 -~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
...+.... .....+++.+++.++....+.+.+...... --.+.+..|++.++|.+.-+.
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 33333222 234589999999999999999876532211 123577899999999886543
No 43
>PTZ00202 tuzin; Provisional
Probab=98.41 E-value=1e-05 Score=85.00 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=102.3
Q ss_pred ccCCCcccccchHHHHHHHHHHhhc---CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 149 KSNKGYEAFESRVSTLKSIQNALTD---ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 149 ~~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..|.+...|+||+.++..+...|.+ ...+++.|+|++|+|||||++.+..... + ..++++.. +..+++.
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 3455778999999999999998863 2346899999999999999999996543 1 13333333 6799999
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHH----hc-CCeEEEEEeCCCCccCccccC---CCCCCCCCCcEEEEEeCChHHHh
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERL----KN-ENKILVILDNIWKHLDLDTVG---IPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l----~~-~k~~LlVlDdv~~~~~~~~l~---~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
.++.+||.+... ...+....+.+.+ .. +++.+||+- +.+-..+..+. ..+.....-|.|++---.+....
T Consensus 328 ~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 328 SVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 999999984332 2223333333333 22 455666653 22222222110 12223344566776544333221
Q ss_pred ---hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 298 ---SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 298 ---~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
....-..|.+++++.++|..+-.+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 12223478899999999998877654
No 44
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=4.1e-06 Score=95.87 Aligned_cols=202 Identities=15% Similarity=0.080 Sum_probs=118.3
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCC---EEEEEEeCCC---CCHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFD---RVVFSEVSQT---PDIKKIQGE 226 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~i~~~ 226 (780)
..+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 4556889999999988888766667899999999999999999988765433331 2345544321 122222111
Q ss_pred ---------------HHHHhCCCC------------------CchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCcc
Q 003996 227 ---------------IAEKLGLEL------------------SDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLD 271 (780)
Q Consensus 227 ---------------i~~~l~~~~------------------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~ 271 (780)
.+...+... .+.-+...+..+.+.+.+ +++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccch
Confidence 111212110 001122345677777766 6788887766654 3577
Q ss_pred ccCCCCCCCCCCcEEEE--EeCChHH-Hhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 272 TVGIPFGNDHEGCRLLL--TARDINV-LLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 272 ~l~~~l~~~~~gs~Ilv--TTR~~~v-~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
.+...+....+...|++ ||++... ... ......+.+.+++.+|.+.++.+.+...... --.++.+.|.+.+..-+
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcHH
Confidence 67655555544444555 5554331 111 1122467889999999999999977532111 11345555666555456
Q ss_pred HHHHHHHHH
Q 003996 348 IALTTVARA 356 (780)
Q Consensus 348 Lai~~~~~~ 356 (780)
.|+..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 666655544
No 45
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=8.5e-07 Score=89.11 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=64.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCch-hH-HHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT--PDIKKIQGEI-----AEKLGLELSDE-AE-YRRAS 245 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i-----~~~l~~~~~~~-~~-~~~~~ 245 (780)
....++|+|++|+|||||++.+++..... +|+.++|+.+.+. .++.++++.+ +.+++.+.... .. .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999988765 8999999998776 7899999998 44444321110 01 11122
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 003996 246 RLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 246 ~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
........+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223468999999999543
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.8e-06 Score=93.37 Aligned_cols=184 Identities=11% Similarity=0.156 Sum_probs=110.9
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC------------------------CC
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK------------------------LF 206 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------------~F 206 (780)
.....++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+...... .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 3556789999999999999987665 4568999999999999999998765311 11
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCc
Q 003996 207 DRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGC 284 (780)
Q Consensus 207 ~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 284 (780)
..+++++.+....+.++ +++++ .+...-..++.-++|+|+++... .++.+...+-.-..++
T Consensus 93 pDviEIdAas~~gVDdI-ReLie----------------~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v 155 (700)
T PRK12323 93 VDYIEMDAASNRGVDEM-AQLLD----------------KAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHV 155 (700)
T ss_pred CcceEecccccCCHHHH-HHHHH----------------HHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCc
Confidence 11233332222222221 11111 11111112456799999998652 3444433333223455
Q ss_pred EE-EEEeCChHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 285 RL-LLTARDINVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 285 ~I-lvTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
++ ++||....+...+ ..-..+.+..++.++..+.+.+.+...... .-.+....|++.++|.|.-...+
T Consensus 156 ~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 156 KFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 54 4455445444322 223578999999999999988776532211 12345678999999998755443
No 47
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=3.9e-06 Score=88.88 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=107.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCC-EEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFD-RVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|.++.++.|.+++..++.+.+.++|++|+||||+|+.+++..... .|. .++-++.+...+.. ..+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 33456788998888888888877777778899999999999999999886432 132 22223333332322 2222222
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccCCCCCCCCCCcEEEEEeCCh-HHHhh-cCCCceE
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--LDTVGIPFGNDHEGCRLLLTARDI-NVLLS-MGSKDNF 305 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~ 305 (780)
.+..... .+..++.-++|+|+++.... ...+...+......+++++++... .+... ......+
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 1110000 00113467999999976521 112211121223456677766442 22111 1123478
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 306 LIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 306 ~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
++.++++++....+...+......- -.+....|++.++|....+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999988765322111 13567889999998764443
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.2e-06 Score=91.44 Aligned_cols=184 Identities=10% Similarity=0.163 Sum_probs=111.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC-------------------CCCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK-------------------LFDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~F~~~~w 211 (780)
.....++|.+...+.|.+++..+.. ..+.++|+.|+||||+|+.+++...... .|..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 3556789999999999999986654 5778999999999999999988764321 1112233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvT 289 (780)
+..+....+.++ ++++..+ ...-..++.-++|+|+++... ..+.+...+-....+.++|++
T Consensus 92 IDAAs~~~VddI-Reli~~~----------------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 92 IDAASRTKVEDT-RELLDNV----------------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred ecccccCCHHHH-HHHHHHH----------------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 333222222221 1122111 111112356789999997652 333333333222345667776
Q ss_pred eCCh-HHHh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 290 ARDI-NVLL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 290 TR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
|.+. .+.. .......+++.+++.++..+.+.+.+...... --.+....|++.++|.+..+..+
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6653 2322 22334689999999999999998876532221 12356778999999987554443
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=1.6e-07 Score=88.50 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=7.0
Q ss_pred CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccc
Q 003996 524 FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLR 570 (780)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~ 570 (780)
.++.+++.|.+.++... .+. ..-..+.+|++|||++|.+.++.
T Consensus 16 ~n~~~~~~L~L~~n~I~---~Ie-~L~~~l~~L~~L~Ls~N~I~~l~ 58 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS---TIE-NLGATLDKLEVLDLSNNQITKLE 58 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T
T ss_pred ccccccccccccccccc---ccc-chhhhhcCCCEEECCCCCCcccc
Confidence 34445566666655542 221 21124556666666666665544
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.3e-05 Score=88.90 Aligned_cols=182 Identities=11% Similarity=0.161 Sum_probs=110.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCC-----------------------CE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLF-----------------------DR 208 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F-----------------------~~ 208 (780)
....++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++........ ..
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 456788999999998887776554 678899999999999999999876432111 01
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEE
Q 003996 209 VVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRL 286 (780)
Q Consensus 209 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~I 286 (780)
++.+.......+.++ +++++.. ...-..+++-++|+|+++.. ..++.+...+......+.+
T Consensus 99 v~eidaas~~~vd~I-r~iie~a----------------~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 99 IIEIDAASKTSVDDI-RRIIESA----------------EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred EEEeeccCCCCHHHH-HHHHHHH----------------HhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 222222222222221 1111111 00001135678999999865 3355554444333445565
Q ss_pred EE-EeCChHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 287 LL-TARDINVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 287 lv-TTR~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
|+ ||+...+...+ .....+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 54 55555554432 2335789999999999999998876332211 235677899999997754433
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.36 E-value=2.2e-05 Score=75.79 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=95.8
Q ss_pred CCCcccccchHHHHHHHHHHhh-----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALT-----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
|.....|+|.++.++.+.-++. .+....+.++|++|+||||||.-+++..... | .+++........++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-H
Confidence 4467789999988887654443 2457789999999999999999999998754 3 22222111111111 1
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------ccccCCC-CCCCC-----------CCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD---------LDTVGIP-FGNDH-----------EGC 284 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~-l~~~~-----------~gs 284 (780)
.++ ..+. ++-+|.+|+++.... .++.... ....+ +=+
T Consensus 94 ~il--------------------~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AIL--------------------TNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHH--------------------HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHH--------------------HhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 111 1222 345677788765411 1111000 00111 122
Q ss_pred EEEEEeCChHHHhhcCCCc--eEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 003996 285 RLLLTARDINVLLSMGSKD--NFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALR 358 (780)
Q Consensus 285 ~IlvTTR~~~v~~~~~~~~--~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (780)
-|=.|||...+...+.... ..+++..+.+|-.++..+.+..-.. +--.+.+.+|++.+.|-|.-..-+-+..+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3556888755554443332 4579999999999999987753222 12246889999999999987666555443
No 52
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.35 E-value=3.1e-06 Score=85.44 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=106.3
Q ss_pred cccchHHHHH---HHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003996 156 AFESRVSTLK---SIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 232 (780)
Q Consensus 156 ~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (780)
.++|.+..+. -|.+.+.++.++.+.+||++|+||||||+.+....+... ..||..|....-..-.++|.++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a- 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA- 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH-
Confidence 4455444332 244445577889999999999999999999998876543 56777776544444444444431
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-ccccCCCCCCCCCCcEEEE--EeCChHHH---hhcCCCceEe
Q 003996 233 LELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-LDTVGIPFGNDHEGCRLLL--TARDINVL---LSMGSKDNFL 306 (780)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~Ilv--TTR~~~v~---~~~~~~~~~~ 306 (780)
+-...+ .++|.+|.+|.|..-.. -+++ .+|...+|.-++| ||.+...- ..+..-.++.
T Consensus 214 -------------q~~~~l-~krkTilFiDEiHRFNksQQD~--fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv 277 (554)
T KOG2028|consen 214 -------------QNEKSL-TKRKTILFIDEIHRFNKSQQDT--FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV 277 (554)
T ss_pred -------------HHHHhh-hcceeEEEeHHhhhhhhhhhhc--ccceeccCceEEEecccCCCccchhHHHHhccceeE
Confidence 111122 34789999999975422 1222 3455667877666 66665432 1233445889
Q ss_pred cCCCCHHHHHHHHHHHcC---CC------CCCc---chHHHHHHHHHHhCCChH
Q 003996 307 IGNLNEEEAWRLFKIMNG---DD------VENC---KFKSTAINVAQACGGLPI 348 (780)
Q Consensus 307 l~~L~~~e~~~Lf~~~~~---~~------~~~~---~l~~~~~~I~~~c~GlPL 348 (780)
|++|+.++...++.+... +. .+.+ --..+.+-++..|+|-..
T Consensus 278 LekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999999999999988432 11 1111 123456666777887654
No 53
>PRK08727 hypothetical protein; Validated
Probab=98.32 E-value=9e-06 Score=81.77 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=98.8
Q ss_pred ccccchH-HHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 155 EAFESRV-STLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 155 ~~~~gR~-~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
+.|++.. ..+..+.....+.....+.|+|++|+|||+|++.+++....+ ...+.|+++.+ ....
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~------- 83 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGR------- 83 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhh-------
Confidence 3454433 333333333333334569999999999999999999886654 33566666432 1111
Q ss_pred CCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---CccccCCCCCC--CCCCcEEEEEeCCh---------HHHhhc
Q 003996 234 ELSDEAEYRRASRLYERLKNENKILVILDNIWKHL---DLDTVGIPFGN--DHEGCRLLLTARDI---------NVLLSM 299 (780)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~l~~--~~~gs~IlvTTR~~---------~v~~~~ 299 (780)
.....+.+. +.-+||+||+.... .|......+.+ ...|..||+|++.. +....+
T Consensus 84 ----------~~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 84 ----------LRDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred ----------HHHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 111222333 34699999997542 23211111111 12355699999852 122233
Q ss_pred CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 300 GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 300 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
.....+.+++++.++-..++.+++.... -.--.+....|++.++|-.-.+.
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHHH
Confidence 3456889999999999999998765221 11124577788888887665553
No 54
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.5e-05 Score=88.75 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=110.3
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhcc-------------------CCCCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASEN-------------------KLFDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~F~~~~w 211 (780)
.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++..... ..|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456788999999999999886554 557899999999999999999865421 11223334
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEE-E
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLL-L 288 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Il-v 288 (780)
+.......+.++ +++++. +...-..+++-++|+|+++... ..+.+...+-.....+.+| +
T Consensus 93 idaas~~gvd~i-r~ii~~----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 93 IDAASRTGVEET-KEILDN----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred eecccccCHHHH-HHHHHH----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 433222222221 122211 1111112356799999997542 3333433333333455555 4
Q ss_pred EeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 003996 289 TARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTVAR 355 (780)
Q Consensus 289 TTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 355 (780)
||....+... ......+++.+++.++....+.+.+..... .--.+....|++.++|.+. |+..+-.
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5544444322 233458899999999998888876542221 1223566789999999664 4444433
No 55
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.9e-06 Score=83.70 Aligned_cols=48 Identities=21% Similarity=0.401 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhh---cCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 156 AFESRVSTLKSIQNALT---DANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999993 4456899999999999999999999988776
No 56
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.31 E-value=1.2e-06 Score=101.65 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=119.4
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh--
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-- 583 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-- 583 (780)
+...+.+...++..+|... .++++.|.+.+|.. ..+|..++ .+|++|+|++|.+..++. .+. .+|+.|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L---tsLP~~l~---~nL~~L~Ls~N~LtsLP~-~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNEL---KSLPENLQ---GNIKTLYANSNQLTSIPA-TLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC---CcCChhhc---cCCCEEECCCCccccCCh-hhh--ccccEEEC
Confidence 3456777777777777533 46899999998876 46787654 589999999999988764 222 245555
Q ss_pred --hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 584 --CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 584 --~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
+....+|.. ++ ..|+.|.-++..+. .++..+ .++|+.|++++|+++.++.. +| ++|+.|+
T Consensus 249 s~N~L~~LP~~-l~--s~L~~L~Ls~N~L~-----~LP~~l--~~sL~~L~Ls~N~Lt~LP~~--lp------~sL~~L~ 310 (754)
T PRK15370 249 SINRITELPER-LP--SALQSLDLFHNKIS-----CLPENL--PEELRYLSVYDNSIRTLPAH--LP------SGITHLN 310 (754)
T ss_pred cCCccCcCChh-Hh--CCCCEEECcCCccC-----cccccc--CCCCcEEECCCCccccCccc--ch------hhHHHHH
Confidence 211222321 00 01111100111110 011111 24677777777776644321 12 4677777
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCccc
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPAL 741 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L 741 (780)
+++|. +..+| ..+ .++|+.|.+++|. +..++. ..+++|+.|++++| ++..+|.. ..++|
T Consensus 311 Ls~N~-Lt~LP--~~l--~~sL~~L~Ls~N~-Lt~LP~----------~l~~sL~~L~Ls~N-~L~~LP~~----lp~~L 369 (754)
T PRK15370 311 VQSNS-LTALP--ETL--PPGLKTLEAGENA-LTSLPA----------SLPPELQVLDVSKN-QITVLPET----LPPTI 369 (754)
T ss_pred hcCCc-cccCC--ccc--cccceeccccCCc-cccCCh----------hhcCcccEEECCCC-CCCcCChh----hcCCc
Confidence 77765 66554 222 3678888888654 555542 13478999999987 46777432 23789
Q ss_pred ceeecccCCCCCCcCC
Q 003996 742 KNLVACNCDKITLSQN 757 (780)
Q Consensus 742 ~~L~i~~C~~L~~~~~ 757 (780)
+.|++++|. |+.+|.
T Consensus 370 ~~LdLs~N~-Lt~LP~ 384 (754)
T PRK15370 370 TTLDVSRNA-LTNLPE 384 (754)
T ss_pred CEEECCCCc-CCCCCH
Confidence 999999985 777763
No 57
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=6.7e-07 Score=92.80 Aligned_cols=290 Identities=20% Similarity=0.217 Sum_probs=180.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLF-DRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
..+.+.++|.|||||||++-.+.. .+.. | +.+.++...+..+...+.-.+...++...... ......+......
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhh
Confidence 357899999999999999999998 4433 6 56777777777788877777777787765431 1123344444444
Q ss_pred CCeEEEEEeCCCCcc-CccccCCCCCCCCCCcEEEEEeCChHHHhhcCCCceEecCCCCHH-HHHHHHHHHcCC----CC
Q 003996 254 ENKILVILDNIWKHL-DLDTVGIPFGNDHEGCRLLLTARDINVLLSMGSKDNFLIGNLNEE-EAWRLFKIMNGD----DV 327 (780)
Q Consensus 254 ~k~~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~----~~ 327 (780)
++.++|+||..... .-..+...+..+...-.|+.|+|.... ........+++|+.. ++.++|...+.. -.
T Consensus 88 -rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 -RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred -hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 78999999975441 111122223334445568888885432 233456777887754 788998876641 11
Q ss_pred CCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHH----hcCCCCCCcCCCCccccchHHhhhccCChhhH
Q 003996 328 ENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRE----LQTPSVVNFEGVPAETYSSIELSFKYLKGEQL 403 (780)
Q Consensus 328 ~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 403 (780)
-...-.....+|.++.+|.|++|...++..+.....+-...++. +... ......-.......+.+||.=|... -
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-E 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-H
Confidence 12223457889999999999999999999987655554443332 2222 1111111345788999999999998 6
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHHHHHHHcccccccCC--CCeEEEcHHHHHHHHHHh
Q 003996 404 KKIFQLCSLIGNSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALVHELRDCCLLLEGDC--NETFSMHDVVCDVAVSIA 481 (780)
Q Consensus 404 k~cf~~~s~fp~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~~--~~~~~mHdlv~d~a~~~~ 481 (780)
+-.|.-++.|...|..+ ...|.+-|-... ...-.....+..+++.+++.-.+. .-.|+.-+-+|.|+..+.
T Consensus 242 ~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 242 RALFGRLAVFVGGFDLG--LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHhcchhhhhhhhccc--HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999777766 344554442110 011111223445666666533211 123555556666666655
Q ss_pred c
Q 003996 482 C 482 (780)
Q Consensus 482 ~ 482 (780)
.
T Consensus 315 ~ 315 (414)
T COG3903 315 H 315 (414)
T ss_pred H
Confidence 4
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.9e-06 Score=91.86 Aligned_cols=196 Identities=12% Similarity=0.035 Sum_probs=109.8
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEE----EEEeCCCCCHHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVV----FSEVSQTPDIKKIQGE 226 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~----wv~vs~~~~~~~i~~~ 226 (780)
.....++|.+...+.+.+.+..+... .+.++|+.|+||+|+|..+.+..-.+....... -.+... ......-+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHH
Confidence 34567899999999999999876654 588999999999999999988764322110000 000000 000001111
Q ss_pred HHHHhCCC-------CCc-------hhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEE
Q 003996 227 IAEKLGLE-------LSD-------EAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRL 286 (780)
Q Consensus 227 i~~~l~~~-------~~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~I 286 (780)
+...-..+ .++ .-..+.+..+.+.+. .+++.++|+||++... ....+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11000000 000 001122333333332 2466799999997552 233333333222345566
Q ss_pred EEEeCChH-HHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 287 LLTARDIN-VLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 287 lvTTR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
|++|.+.. +... ......+.+.+++.++..+++.+...... .+....+++.++|.|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 66666543 3332 23345889999999999999988643211 122267899999999866544
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=87.91 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=110.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKL-------------------FDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------F~~~~w 211 (780)
.....++|.+.....|...+..+.. ..+.++|++|+||||+|+.+++....... +..++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3556789999888888888876665 56889999999999999999887543210 112233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvT 289 (780)
++.+....+.++ ++|.+.... .-..+++-++|+|+++.. ...+.+...+........+|++
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 333322233222 222222110 001135679999999754 2233333333222234444444
Q ss_pred eCC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHHHH
Q 003996 290 ARD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTVARAL 357 (780)
Q Consensus 290 TR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~~L 357 (780)
|.+ ..+... ......+.+.+++.++....+.+.+..... .--.+....|++.++| ++.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 443 333332 223457889999999999998887642211 1123567788887765 466777665544
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.5e-05 Score=86.58 Aligned_cols=198 Identities=10% Similarity=0.111 Sum_probs=110.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.......... .......+-..+...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISS 90 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCc
Confidence 335567899999999999998877654 5899999999999999999987653211100 001111111111111000
Q ss_pred HhC-CCCCchhHHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEE-EEeCChHHHhh-cC
Q 003996 230 KLG-LELSDEAEYRRASRLYERL----KNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLL-LTARDINVLLS-MG 300 (780)
Q Consensus 230 ~l~-~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Il-vTTR~~~v~~~-~~ 300 (780)
.+. .........+.+..+.+.+ ..++.-++|+|+++.. ..++.+...+-.......+| .||....+... ..
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 000 0000000011122222222 2345679999999765 33554433332222344544 44444444332 22
Q ss_pred CCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 301 SKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 301 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
....|.+.+++.++..+.+.+.+..... .--.+....|++.++|.+.-+-.
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHHHHH
Confidence 2347999999999999998887653221 11245778999999998854433
No 61
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2e-05 Score=83.66 Aligned_cols=197 Identities=11% Similarity=0.079 Sum_probs=111.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCC--CCEEEEEEeCCCCCHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKL--FDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i 227 (780)
|.....++|.+.....+...+..+.. ..+.|+|+.|+||||+|..+.+..-.... +... ............+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 33566789999999999999886654 46889999999999999999987654210 1111 001111111122222
Q ss_pred HHH-------hCCCCCc-------hhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcE-E
Q 003996 228 AEK-------LGLELSD-------EAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCR-L 286 (780)
Q Consensus 228 ~~~-------l~~~~~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~-I 286 (780)
... +..+.+. .-..+.+..+.+++. .+++-++|+|+++... ..+.+...+.....+.. |
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 221 0000000 001122334444443 2466799999997653 22222222222222344 4
Q ss_pred EEEeCChHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 287 LLTARDINVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 287 lvTTR~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
++|++...+.... .....+.+.+++.++..+++.+...... --.+.+..|++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554443333322 2235899999999999999988432211 11345778999999999866543
No 62
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.28 E-value=1.1e-05 Score=81.38 Aligned_cols=167 Identities=16% Similarity=0.092 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhH
Q 003996 161 VSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAE 240 (780)
Q Consensus 161 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (780)
...+..+.++....+...+.|+|+.|+|||+|++.+++....+ -..+.++++.....
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---------------------
Confidence 3345555555544555788999999999999999999876643 34566766643100
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCc---cCccc----cCCCCCCCCCCcEEEEEeCCh---------HHHhhcCCCce
Q 003996 241 YRRASRLYERLKNENKILVILDNIWKH---LDLDT----VGIPFGNDHEGCRLLLTARDI---------NVLLSMGSKDN 304 (780)
Q Consensus 241 ~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~----l~~~l~~~~~gs~IlvTTR~~---------~v~~~~~~~~~ 304 (780)
....+.+.+.+ --+|++||+... ..|+. +...... .++.++|+||+.. +....+....+
T Consensus 87 --~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~ 161 (235)
T PRK08084 87 --FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred --hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCce
Confidence 00111222222 248899999654 23432 1111111 1234689998754 22234455678
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 003996 305 FLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARA 356 (780)
Q Consensus 305 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 356 (780)
+.++++++++-.+++.+++.... -.--+++..-|++.+.|..-++..+-..
T Consensus 162 ~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred eeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99999999999999988664321 1222467888899888876665554443
No 63
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=7.2e-06 Score=94.78 Aligned_cols=175 Identities=19% Similarity=0.253 Sum_probs=100.8
Q ss_pred CCcccccchHHHHH---HHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 152 KGYEAFESRVSTLK---SIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 152 ~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
.....|+|++..+. .+.+.+..+....+.++|++|+||||+|+.+++.... +|. .++... ..+.++ ++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~-- 95 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RA-- 95 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HH--
Confidence 34567889888774 5666666677778899999999999999999987643 241 111110 011110 11
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEE--eCChH--HHh-hcC
Q 003996 229 EKLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLT--ARDIN--VLL-SMG 300 (780)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvT--TR~~~--v~~-~~~ 300 (780)
......+.+. .+++.+||+||++... ..+.+...+ ..|+.++|+ |.+.. +.. ...
T Consensus 96 --------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 96 --------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred --------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 1111111111 1356799999997542 333332222 235555553 33321 111 112
Q ss_pred CCceEecCCCCHHHHHHHHHHHcCC------CCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 301 SKDNFLIGNLNEEEAWRLFKIMNGD------DVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 301 ~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
....+.+++++.++...++.+.+.. .....--.+....|++.+.|.-..+..
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln 216 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLN 216 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHH
Confidence 2357899999999999999887641 111112245678888889887544333
No 64
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.25 E-value=3.4e-05 Score=83.47 Aligned_cols=184 Identities=12% Similarity=0.163 Sum_probs=110.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhcc--------------------CCCCEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASEN--------------------KLFDRVVF 211 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~--------------------~~F~~~~w 211 (780)
....++|.+..++.+.+++.++.. ..+.++|++|+||||+|+.+.+..... .+++. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 455678999999999999886654 567899999999999999998876422 12332 33
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvT 289 (780)
+..+......+ .+++...+.... ..+++-++|+|++... .....+...+......+.+|++
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 33222112111 122222221100 0124568899998654 2233333333223345666667
Q ss_pred eCChH-HHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 290 ARDIN-VLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 290 TR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
|.+.. +... ......+.+.+++.++....+.+.+...... --.+.+..+++.++|.|..+.....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 65543 2222 2233578899999999999998866422211 1136778899999998876655443
No 65
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.6e-05 Score=83.95 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=103.2
Q ss_pred ccccchHHHHHHHHHHhhcCC----------eEEEEEEeCCCChHHHHHHHHHHHhhcc-------------------CC
Q 003996 155 EAFESRVSTLKSIQNALTDAN----------VSIIGVYGMGGIGKTTLVKEFVRQASEN-------------------KL 205 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~ 205 (780)
..++|.+..++.|.+++..+. ...+.++|+.|+|||++|+.+++..-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 467899999999999887543 4668899999999999999998765322 12
Q ss_pred CCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCC
Q 003996 206 FDRVVFSEVS-QTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHE 282 (780)
Q Consensus 206 F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~ 282 (780)
.| +.++... ....+.++ +++.+.+.. .-..+++-++|+|+++... ..+.+...+-....
T Consensus 85 pD-~~~i~~~~~~i~i~~i-R~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDEV-RELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEeccccccCCHHHH-HHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 22 2222211 11122221 122222111 0011345688889997652 22223222222234
Q ss_pred CcEEEEEeCC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 283 GCRLLLTARD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 283 gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
+..+|++|.+ ..+... ......+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5556665555 344432 223458899999999999988754321 1 345778999999999755433
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.25 E-value=3e-06 Score=88.63 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCC-CCchhHH-----HHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP--DIKKIQGEIAEKLGLE-LSDEAEY-----RRASR 246 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~-~~~~~~~-----~~~~~ 246 (780)
..+...|+|++|+||||||+.+++....+ +|+.++||.+.+.. .+.++++.|...+-.. .+..... ...-.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999998876 89999999998887 7778888876322111 1111111 11112
Q ss_pred HHHHH-hcCCeEEEEEeCCCC
Q 003996 247 LYERL-KNENKILVILDNIWK 266 (780)
Q Consensus 247 l~~~l-~~~k~~LlVlDdv~~ 266 (780)
..+++ ..+++.+|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 22222 346889999999854
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.5e-05 Score=88.92 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCC-------------------CEEE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLF-------------------DRVV 210 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F-------------------~~~~ 210 (780)
|.....++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++........ ...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii 91 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV 91 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE
Confidence 33556789999999999999876544 568899999999999999999876432111 0122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ilv 288 (780)
++..+....+.++ +++...+... -... ++-++|+|+++.. ..+..+...+-.....+.+|+
T Consensus 92 eIdaas~igVd~I-ReIi~~~~~~---------------P~~~-~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL 154 (605)
T PRK05896 92 ELDAASNNGVDEI-RNIIDNINYL---------------PTTF-KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIF 154 (605)
T ss_pred EeccccccCHHHH-HHHHHHHHhc---------------hhhC-CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 2222111122111 1111111100 0112 3447999998754 233333333322223455544
Q ss_pred Ee-CChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 003996 289 TA-RDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTVAR 355 (780)
Q Consensus 289 TT-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 355 (780)
+| ....+... ......+++.+++.++....+.+.+...... --.+.+..+++.++|.+. |+..+-.
T Consensus 155 ~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 155 ATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44 44444332 2334578999999999999988866422111 113567789999999665 4444433
No 68
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=2.6e-05 Score=75.87 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=93.4
Q ss_pred HHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhcc--------------------CCCCEEEEEEeC-CCCCHHHH
Q 003996 166 SIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASEN--------------------KLFDRVVFSEVS-QTPDIKKI 223 (780)
Q Consensus 166 ~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~i 223 (780)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+..... .+.|. .++... .....++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 34555555555 678999999999999999998886532 22222 222221 1222222
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCCh-HHHhh-c
Q 003996 224 QGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDI-NVLLS-M 299 (780)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~-~ 299 (780)
.+++.+.+.... ..+.+-++|+||++... ..+.+...+......+.+|++|++. .+... .
T Consensus 81 i~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 122222221100 01356789999986542 2334433333333455666666653 22221 2
Q ss_pred CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHH
Q 003996 300 GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIA 349 (780)
Q Consensus 300 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 349 (780)
.....+.+.+++.++..+.+.+. + .. .+.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 23358999999999999999887 2 11 36788999999998863
No 69
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-05 Score=89.21 Aligned_cols=180 Identities=12% Similarity=0.149 Sum_probs=108.9
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC------------------------CC
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK------------------------LF 206 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~------------------------~F 206 (780)
.....++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+...... .+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 3556788999999999999887665 5668999999999999999987654211 01
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCC
Q 003996 207 DRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGND 280 (780)
Q Consensus 207 ~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~ 280 (780)
..+++++.+....+.+ +..+.+... .++.-++|+|+++... .++.+...+-..
T Consensus 93 ~D~~eldaas~~~Vd~---------------------iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 93 VDYTELDAASNRGVDE---------------------VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred CceeecCcccccCHHH---------------------HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 1122222222222211 112222211 1345589999998652 344443333333
Q ss_pred CCCcEEEEEe-CChHHHh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 281 HEGCRLLLTA-RDINVLL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 281 ~~gs~IlvTT-R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
...+++|++| ....+.. .......+.+.+++.++..+.+.+.+...... --.+....|++.++|.+.-+..+
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3455555554 4444433 22334589999999999999998876532221 12356788999999977555443
No 70
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.5e-05 Score=85.78 Aligned_cols=182 Identities=11% Similarity=0.119 Sum_probs=112.0
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhcc-------------------CCCCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASEN-------------------KLFDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~F~~~~w 211 (780)
.....++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++..... ..+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 35567899999999998888866654 78999999999999999998754211 11223445
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvT 289 (780)
++.+....+.++ +++++..... -...+.-++|+|+++... ..+.+...+-.....+++|++
T Consensus 90 idaas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 555444444432 2233222100 001355689999996542 233333333333345665555
Q ss_pred e-CChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 290 A-RDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 290 T-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
| ....+... ......+.+.+++.++..+.+.+.+...... --.+.+..|++.++|.+..+.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 5 44444432 2334578999999999999998877533221 123567789999999876443
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.6e-05 Score=88.73 Aligned_cols=184 Identities=11% Similarity=0.163 Sum_probs=110.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccC-------------------CCCEEE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENK-------------------LFDRVV 210 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~F~~~~ 210 (780)
|.....++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++...... .|.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345667899999999999999876654 578999999999999999998764321 122244
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv 288 (780)
.+..+....+.++ +++++.+... -..++.-++|+|+++... ..+.+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 4443333333332 2333322111 112355689999997652 33333333322234566555
Q ss_pred EeCC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 289 TARD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 289 TTR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
+|.+ ..+... ......+++.+++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHH
Confidence 5543 333322 22234688999999998887776654322111 134567889999998765444
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.24 E-value=5.4e-08 Score=99.06 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=36.8
Q ss_pred cceEEEeecCcccccCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh
Q 003996 506 KCYAISLLNSSIHEVSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L 583 (780)
..+++.+..+....++++ .++..+..+...++.. ..+|+++ ..+..|-+|++.++.+..|+. ++-+++.|++|
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i---~slp~~~-~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~l 188 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQI---SSLPEDM-VNLSKLSKLDLEGNKLKALPE-NHIAMKRLKHL 188 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhcccccc---ccCchHH-HHHHHHHHhhccccchhhCCH-HHHHHHHHHhc
Confidence 344455555554444433 2455555555444443 2455443 445556666666666665554 33335666655
No 73
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.5e-07 Score=97.15 Aligned_cols=208 Identities=19% Similarity=0.155 Sum_probs=129.4
Q ss_pred hccceEEEeecCcccccCC---CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc----ccccccCC
Q 003996 504 LKKCYAISLLNSSIHEVSE---EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ----LRSLTLGK 576 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~----L~~L~i~~ 576 (780)
.+++|.+++.++.+...+. ...|++++.|.++.+-..+ ....-.+...+++|+.|+|+.|.+.. ...+ -
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---L 195 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCccccchh---h
Confidence 4678888888887765552 3579999999998775531 33345677899999999999987653 2221 2
Q ss_pred ChhHHHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccC
Q 003996 577 LPKVTRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQS 656 (780)
Q Consensus 577 L~~L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~ 656 (780)
+.+|+.| . +.+| ++. ........-.+|+|+.|.|.+|+.--. ...| ..-++.
T Consensus 196 l~~lK~L----~---------------l~~C-Gls---~k~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~--~~i~~~ 247 (505)
T KOG3207|consen 196 LSHLKQL----V---------------LNSC-GLS---WKDVQWILLTFPSLEVLYLEANEIILI---KATS--TKILQT 247 (505)
T ss_pred hhhhheE----E---------------eccC-CCC---HHHHHHHHHhCCcHHHhhhhcccccce---ecch--hhhhhH
Confidence 3333333 0 0000 000 011112345688999999998742110 0112 344578
Q ss_pred ccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCcc
Q 003996 657 LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTS 736 (780)
Q Consensus 657 L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~ 736 (780)
|+.|+|++.. +.+.+.....+.||.|..|+++.|. +..+-....+.. .-...||+|++|.+..++ ...|++-.+.-
T Consensus 248 L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~-~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~ 323 (505)
T KOG3207|consen 248 LQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESL-DKTHTFPKLEYLNISENN-IRDWRSLNHLR 323 (505)
T ss_pred HhhccccCCc-ccccccccccccccchhhhhccccC-cchhcCCCccch-hhhcccccceeeecccCc-cccccccchhh
Confidence 9999999986 5566566678889999999998654 555544332211 234589999999998865 45554444445
Q ss_pred CCcccceeecc
Q 003996 737 EWPALKNLVAC 747 (780)
Q Consensus 737 ~~p~L~~L~i~ 747 (780)
.+++|..|.+-
T Consensus 324 ~l~nlk~l~~~ 334 (505)
T KOG3207|consen 324 TLENLKHLRIT 334 (505)
T ss_pred ccchhhhhhcc
Confidence 66777777653
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.7e-05 Score=89.40 Aligned_cols=186 Identities=13% Similarity=0.180 Sum_probs=109.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCC-------------------CCEEE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKL-------------------FDRVV 210 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------F~~~~ 210 (780)
|.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+....... |..++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 33556789999999999999987664 56799999999999999999886532211 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--LDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~Ilv 288 (780)
.+..+....+.. +++++... ...-..+++-++|+|++..... ...+...+-.....+++|+
T Consensus 92 EidaAs~~gVd~-IRelle~a----------------~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 92 EIDAASNTGIDN-IREVLENA----------------QYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred EEeccccCCHHH-HHHHHHHH----------------HhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 333222222211 12222111 0000113567899999975432 2222222222223556666
Q ss_pred EeCC-hHHHh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 289 TARD-INVLL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 289 TTR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
+|.+ ..+.. ..+....+.+.+++.++....+.+.+...... --.+....|++.++|.+.-+..+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 6644 32222 12223467888999999999998876532211 123567899999999885554433
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.22 E-value=3.6e-05 Score=83.25 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=100.8
Q ss_pred CcccccchHHHHHHHHHHhh----c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT----D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....+.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch---
Confidence 34568899999999888764 1 124568899999999999999999976532 3 22211
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 281 (780)
..+.... ++ ........+.+......+.+|++||++.... +..+...+. ...
T Consensus 190 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 11 1112233344444444678999999865310 111111111 122
Q ss_pred CCcEEEEEeCChHHHh-h----cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 282 EGCRLLLTARDINVLL-S----MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~-~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
.+.+||.||....... . ......+.++..+.++..++|..++.......+. ....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 4667888887543221 1 1224578899999999999999887643322211 1346777777654
No 76
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.22 E-value=2.5e-06 Score=98.53 Aligned_cols=95 Identities=15% Similarity=0.027 Sum_probs=62.3
Q ss_pred ccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccc
Q 003996 626 PNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQ 705 (780)
Q Consensus 626 ~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 705 (780)
++|..|++++|.+..++.. ..+|+.|+|+++. +..+|.. .++|+.|+++++. +..+|.
T Consensus 362 ~~L~~L~Ls~N~L~~LP~l---------~~~L~~LdLs~N~-Lt~LP~l-----~s~L~~LdLS~N~-LssIP~------ 419 (788)
T PRK15387 362 SELYKLWAYNNRLTSLPAL---------PSGLKELIVSGNR-LTSLPVL-----PSELKELMVSGNR-LTSLPM------ 419 (788)
T ss_pred cccceehhhccccccCccc---------ccccceEEecCCc-ccCCCCc-----ccCCCEEEccCCc-CCCCCc------
Confidence 4677788887777643321 2568888888875 7766522 3578888888643 555542
Q ss_pred cccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 706 VTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 706 ~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+.+|+.|+++++ +++.+|.. .+.+++|+.|++++++
T Consensus 420 -----l~~~L~~L~Ls~N-qLt~LP~s--l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 -----LPSGLLSLSVYRN-QLTRLPES--LIHLSSETTVNLEGNP 456 (788)
T ss_pred -----chhhhhhhhhccC-cccccChH--HhhccCCCeEECCCCC
Confidence 2346777888774 46777433 3567888888887776
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.8e-05 Score=89.70 Aligned_cols=185 Identities=12% Similarity=0.145 Sum_probs=108.9
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCC-------------------CCEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKL-------------------FDRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-------------------F~~~~w 211 (780)
.....++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++....... |...+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 3566789999999999999887665 44689999999999999999887643211 111122
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE-
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL- 288 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv- 288 (780)
+..+....+++ .++|.+ .+...-..+++-++|+|+++... ..+.+...+-......++|+
T Consensus 93 idaas~~~Vdd-iR~li~----------------~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 93 IDAASRTKVED-TRELLD----------------NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred ecccccCCHHH-HHHHHH----------------HHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 22211111111 112221 11111112456799999997652 33333222222223445444
Q ss_pred EeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 289 TARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 289 TTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
||....+... ......+.+.+++.++....+.+.+..... ..-.+....|++.++|.+.-+..+.
T Consensus 156 Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred cCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4544444332 223458999999999999999886642211 1123566789999999886544443
No 78
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.20 E-value=2.3e-07 Score=83.62 Aligned_cols=74 Identities=18% Similarity=0.329 Sum_probs=52.1
Q ss_pred ccceEEEeecCcccccCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh
Q 003996 505 KKCYAISLLNSSIHEVSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L 583 (780)
..+.++.++.|.+..+|.. .++.+|++|.+.++.. ..+|.+ ++.++.||.|++.-+.+..|+. .+|.++-|+.|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi---e~lp~~-issl~klr~lnvgmnrl~~lpr-gfgs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI---EELPTS-ISSLPKLRILNVGMNRLNILPR-GFGSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh---hhcChh-hhhchhhhheecchhhhhcCcc-ccCCCchhhhh
Confidence 4567777777777666554 3677788877777665 456665 4778888888887777777776 67777777766
No 79
>PF14516 AAA_35: AAA-like domain
Probab=98.16 E-value=0.00014 Score=77.20 Aligned_cols=200 Identities=15% Similarity=0.204 Sum_probs=119.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-----CCHHHHHH--
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-----PDIKKIQG-- 225 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~-- 225 (780)
+.+..+.|...-+.+.+.+.+. ...+.|.|+-.+|||+|...+.+..+.. .+ .+++++...- .+....++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 4455678887777888777654 4688999999999999999999888764 23 4557766541 24554444
Q ss_pred --HHHHHhCCCCCch--------hHHHHHHHHHHHHh-c-CCeEEEEEeCCCCccCc----cccCCCCCC-------C-C
Q 003996 226 --EIAEKLGLELSDE--------AEYRRASRLYERLK-N-ENKILVILDNIWKHLDL----DTVGIPFGN-------D-H 281 (780)
Q Consensus 226 --~i~~~l~~~~~~~--------~~~~~~~~l~~~l~-~-~k~~LlVlDdv~~~~~~----~~l~~~l~~-------~-~ 281 (780)
.|.++++....-. +.......+.+.+. . +++.+|++|+++..... +++...+.. . .
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4455555442111 11111222333322 1 57999999999755221 111111100 0 0
Q ss_pred CCcEEEEEeCChH--HHh-----hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 282 EGCRLLLTARDIN--VLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 282 ~gs~IlvTTR~~~--v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
-..-.++...+.. ... .++....+.|++++.+|...|+.++-.. .. ....++|...+||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHH
Confidence 0111222222111 111 1233457889999999999999876322 11 1237899999999999999999
Q ss_pred HHHhcC
Q 003996 355 RALRNK 360 (780)
Q Consensus 355 ~~L~~~ 360 (780)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999753
No 80
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.3e-05 Score=85.45 Aligned_cols=199 Identities=12% Similarity=0.127 Sum_probs=109.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE-eCCCCCHHHHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE-VSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~ 230 (780)
....++|.+...+.|..++.++.++ .+.++|+.|+||||+|..+++.......+....|.. +.........-+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 4567889999999999988876664 488999999999999999998775432111111110 00001111111111100
Q ss_pred hCCC-----CCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEe-CChHHHhh
Q 003996 231 LGLE-----LSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTA-RDINVLLS 298 (780)
Q Consensus 231 l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTT-R~~~v~~~ 298 (780)
...+ .......+.+..+.+.+. ..++-++|+|+++... .++.+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000 000000112222333331 1345688999987553 4554444443334456655554 43444332
Q ss_pred c-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 299 M-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 299 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
+ .....+++.+++.++..+.+...+..... .--.+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 12347889999999999888887642211 11246788999999997754443
No 81
>PRK09087 hypothetical protein; Validated
Probab=98.14 E-value=2e-05 Score=78.58 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=88.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..+.+.|+|++|+|||+|++.+++.... .+++.. .+..++. ..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhhc-
Confidence 3467899999999999999988876432 133221 1111111 11111
Q ss_pred CeEEEEEeCCCCccC-ccccCCCCC-CCCCCcEEEEEeCC---------hHHHhhcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 255 NKILVILDNIWKHLD-LDTVGIPFG-NDHEGCRLLLTARD---------INVLLSMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 255 k~~LlVlDdv~~~~~-~~~l~~~l~-~~~~gs~IlvTTR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
-+|++||+..... -..+...+- -...|..||+|++. ++....+.....+++++++.++-.+++.+.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 3788899964321 011111110 01236678988874 2233344556789999999999999999987
Q ss_pred CCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 324 GDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 324 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
....- .--+++..-|++.+.|..-++..+...|
T Consensus 167 ~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 63211 1124678888898888877766544333
No 82
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.13 E-value=2.2e-06 Score=101.14 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCC
Q 003996 646 QLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPE 725 (780)
Q Consensus 646 ~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 725 (780)
+.|.|....++|+.|++..|..+... ++....+..++.+.+. +..++.+.. ..+.+.||++..+.+... .
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~--i~~~k~~~~l~~~i~~-f~~~~~l~~------~~~l~~l~~i~~~~l~~~-~ 830 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDI--IPKLKALLELKELILP-FNKLEGLRM------LCSLGGLPQLYWLPLSFL-K 830 (889)
T ss_pred cccchhhccCcccEEEEecccccccC--CCHHHHhhhcccEEec-cccccccee------eecCCCCceeEecccCcc-c
Confidence 44555666799999999999976654 4666777777775554 455554421 135677888888888774 3
Q ss_pred ccccCCCCCc----cCCcccceeecccC-CCCCCcCCCC
Q 003996 726 LRCLYPGMHT----SEWPALKNLVACNC-DKITLSQNDE 759 (780)
Q Consensus 726 L~~~~~~~~~----~~~p~L~~L~i~~C-~~L~~~~~~~ 759 (780)
|+.| ..+. +.+|.+.++.|.+| +++...|++.
T Consensus 831 l~~~--~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 831 LEEL--IVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred hhhe--ehhcCcccccCccccccceeccccceeecCCcc
Confidence 7777 3333 67899999999997 8898888764
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.4e-05 Score=86.73 Aligned_cols=183 Identities=13% Similarity=0.172 Sum_probs=107.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccC-------------------CCCEEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENK-------------------LFDRVVFS 212 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 212 (780)
....++|.+..++.+..++..+... .+.++|+.|+||||+|+.+.+...... .|...+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 4567889999999999998876654 568999999999999999988764321 12223333
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEe
Q 003996 213 EVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTA 290 (780)
Q Consensus 213 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTT 290 (780)
..+....+.+ +++++..+... -..+++-++|+|+++... ..+.+...+-.....+.+|++|
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 3322222222 12222221110 012356799999997553 2333333332223455555555
Q ss_pred CC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 003996 291 RD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTV 353 (780)
Q Consensus 291 R~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 353 (780)
.+ ..+... ......+++.+++.++..+.+.+.+...... .-.+.+..|++.++|.+. |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 333221 1123478899999999998888766422211 123566789999999775 44433
No 84
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=5.1e-05 Score=88.95 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=107.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCCC---------------------CEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKLF---------------------DRVV 210 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~F---------------------~~~~ 210 (780)
....++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+.+.....+.. ..++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 4567889999999999999876654 57899999999999999999877532111 1123
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ilv 288 (780)
++.......+.++ +++.+. +...-...+.-++|||+++.. ...+.|...+-.....+.+|+
T Consensus 93 eidaas~~~Vd~i-R~l~~~----------------~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 93 EIDAASHGGVDDA-RELRER----------------AFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred EecccccCCHHHH-HHHHHH----------------HHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3332222222222 112111 111111235568889999765 233334333333334555555
Q ss_pred Ee-CChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 289 TA-RDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 289 TT-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
+| ....+... ......|++..++.++..+++.+.+...... --.+....|++.++|.+..+.
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 54 44444432 2334578999999999998888765422211 123456788999999884443
No 85
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=5.8e-05 Score=85.54 Aligned_cols=182 Identities=10% Similarity=0.151 Sum_probs=110.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCC-----------------------
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLF----------------------- 206 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F----------------------- 206 (780)
|.....++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++........
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCC
Confidence 33566789999999999999987664 468899999999999999999876432111
Q ss_pred -CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCC
Q 003996 207 -DRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGN 279 (780)
Q Consensus 207 -~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~ 279 (780)
.-++++.......+.+ +..+.+.+. ..++-++|+|+++... ..+.+...+-.
T Consensus 100 h~Dv~e~~a~s~~gvd~---------------------IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 100 HVDVLEMDAASHTGVDD---------------------IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred CCceEEecccccCCHHH---------------------HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 0112222221111111 122222221 1345689999986553 23333333323
Q ss_pred CCCCcEEEEEe-CChHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 280 DHEGCRLLLTA-RDINVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 280 ~~~gs~IlvTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
...++.+|++| ....+...+ .....+.+.+++.++....+.+.+...... --.+....|++.++|.+.-+....
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33456655544 444443322 233578999999999999998876532211 113577889999999887665444
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.08 E-value=3.6e-05 Score=77.43 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=93.7
Q ss_pred HHHHHHHHHhh-cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhH
Q 003996 162 STLKSIQNALT-DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAE 240 (780)
Q Consensus 162 ~~~~~l~~~L~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (780)
..+..+.++.. ......+.|+|+.|+|||+||+.+++...... ....+++..... .. +
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~------~~----~--------- 85 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL------LA----F--------- 85 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH------HH----H---------
Confidence 33444444433 23446788999999999999999999764331 234455443311 00 0
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccCcc--ccCCCCCC-CCCCc-EEEEEeCChHHHh--------hcCCCceEecC
Q 003996 241 YRRASRLYERLKNENKILVILDNIWKHLDLD--TVGIPFGN-DHEGC-RLLLTARDINVLL--------SMGSKDNFLIG 308 (780)
Q Consensus 241 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~l~~~l~~-~~~gs-~IlvTTR~~~v~~--------~~~~~~~~~l~ 308 (780)
... . +.-+||+||+.....+. .+...+.. ...+. .||+|++...... .+.....+.++
T Consensus 86 --------~~~-~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~ 155 (227)
T PRK08903 86 --------DFD-P-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELK 155 (227)
T ss_pred --------hhc-c-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEec
Confidence 011 1 23478899997543221 12111211 11233 3666665432111 22224688999
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 309 NLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 309 ~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
++++++-..++.+.+.... ..--+++.+.+++.+.|++..+..+...+
T Consensus 156 pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 156 PLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999887777776543211 11123577888889999999887776655
No 87
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.08 E-value=9e-05 Score=75.09 Aligned_cols=192 Identities=18% Similarity=0.216 Sum_probs=115.3
Q ss_pred HHHHHHHHHhhc---CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCC----CEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003996 162 STLKSIQNALTD---ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLF----DRVVFSEVSQTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 162 ~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (780)
+.++.+.+.+.. ...+-+.|+|.+|.|||++++++.+.......- -.++.|.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 445555555552 345679999999999999999999876543111 1477888889999999999999999998
Q ss_pred CCc-hhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------ccccCCCCCCCCCCcEEEEEeCChHHHhh-----c
Q 003996 235 LSD-EAEYRRASRLYERLKNENKILVILDNIWKHLD---------LDTVGIPFGNDHEGCRLLLTARDINVLLS-----M 299 (780)
Q Consensus 235 ~~~-~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~IlvTTR~~~v~~~-----~ 299 (780)
... ...........+.++.-+.-+||+|++.+... ++.+ ..+.+.-.=+-|.+-|+.-.-+-. .
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 743 33334444455666655667999999987521 1111 111111122335555553211110 1
Q ss_pred CCCceEecCCCCH-HHHHHHHHHHc---C-CCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 300 GSKDNFLIGNLNE-EEAWRLFKIMN---G-DDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 300 ~~~~~~~l~~L~~-~e~~~Lf~~~~---~-~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
+....+.++.... +|...|+.... . .....-...++++.|...++|+.--+..+-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 1123555665554 34445544332 2 222223346789999999999875554443
No 88
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.7e-05 Score=83.58 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=64.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC--CCHHHHHHHHHH-----HhCCCCCch-hHHHH-HH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT--PDIKKIQGEIAE-----KLGLELSDE-AEYRR-AS 245 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~-----~l~~~~~~~-~~~~~-~~ 245 (780)
....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+.. .++.+.... ..... .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 45679999999999999999999988765 8999999999866 688999999843 333211110 11111 22
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 003996 246 RLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 246 ~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
........+++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222223468999999998543
No 89
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.6e-05 Score=83.31 Aligned_cols=189 Identities=14% Similarity=0.120 Sum_probs=110.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCCC---------------------CE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKLF---------------------DR 208 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~F---------------------~~ 208 (780)
|.....++|.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++........ ..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 335567899999999999999876655 46899999999999999999876432111 11
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEE
Q 003996 209 VVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRL 286 (780)
Q Consensus 209 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~I 286 (780)
++.+..+....+.++ ++|.+ .+...-...++-++|+|+++.. ...+.+...+......+.+
T Consensus 89 vieidaas~~gvd~i-Rel~~----------------~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 89 VVELDAASHGGVDDT-RELRD----------------RAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred EEEeccccccCHHHH-HHHHH----------------HHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 223322222222221 11111 1111111134568899999755 2333333333333335554
Q ss_pred E-EEeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHH
Q 003996 287 L-LTARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTVARAL 357 (780)
Q Consensus 287 l-vTTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~~L 357 (780)
| +||....+... ......+.+.+++.++..+.+.+.+...... --.+.+..|++.++|.+. |+..+-.++
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 45554554432 2334589999999999998888766532211 113566788999999775 444444433
No 90
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.06 E-value=4.7e-05 Score=90.43 Aligned_cols=179 Identities=11% Similarity=0.114 Sum_probs=101.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCEEEE-EEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDRVVF-SEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~i~~~i 227 (780)
...+++||+.++.++++.|......-+.++|++|+||||+|+.++++...... .+..+| +..+.-..
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------- 256 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------- 256 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc--------
Confidence 45688999999999999998776677789999999999999999998743211 122333 33322000
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc------Cccc---cCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKHL------DLDT---VGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~------~~~~---l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
+... .......+..+.+.+. .+++.+|++|+++... .-.+ +..+.... ..-++|-||..++...
T Consensus 257 ----g~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 257 ----GASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAEYKK 330 (852)
T ss_pred ----cccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHHHhh
Confidence 0000 0111122333333332 2467999999986542 1111 22222222 2345666665433211
Q ss_pred -------hcCCCceEecCCCCHHHHHHHHHHHcC---CCCCCcchHHHHHHHHHHhCC
Q 003996 298 -------SMGSKDNFLIGNLNEEEAWRLFKIMNG---DDVENCKFKSTAINVAQACGG 345 (780)
Q Consensus 298 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~l~~~~~~I~~~c~G 345 (780)
.......+.+++++.++..+++..... ....-.-..+....+++.+.+
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 112235899999999999999755442 111111123455566666654
No 91
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00013 Score=79.14 Aligned_cols=182 Identities=9% Similarity=0.126 Sum_probs=104.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhcc------CCCCE-EEEEEeCCCCCHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASEN------KLFDR-VVFSEVSQTPDIKKIQ 224 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~------~~F~~-~~wv~vs~~~~~~~i~ 224 (780)
....++|.+...+.+.+++..+.. +.+.++|++|+||||+|+.+.+..... ..|.. ++-+......+..+ .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 456778999999999999986654 588899999999999999998876431 11221 11121111111222 1
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeC-ChHHHh-hcC
Q 003996 225 GEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTAR-DINVLL-SMG 300 (780)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR-~~~v~~-~~~ 300 (780)
.++++++.... . .+++-++|+|++.... .+..+...+......+.+|++|. ...... ...
T Consensus 94 ~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22222221100 0 1245689999986542 23333222222233455555553 333322 122
Q ss_pred CCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 301 SKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 301 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
....++..+++.++....+.+.+...... --.+.+..|++.++|.+-.+..
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHHHH
Confidence 33478999999999999888866532211 1136778888999987654433
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.2e-05 Score=84.03 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=110.5
Q ss_pred CcccccchHHHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhccCCC-------------------CEEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASENKLF-------------------DRVVFS 212 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F-------------------~~~~wv 212 (780)
....++|.+..++.|.+++..+. ...+.++|+.|+||||+|+.+++........ .-++++
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 45577898888888888887665 4778899999999999999999876432111 012233
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEe
Q 003996 213 EVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTA 290 (780)
Q Consensus 213 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTT 290 (780)
.......+.++ +.|.+.+ ...-..+++-++|+|+++... ..+.+...+........+|++|
T Consensus 94 d~a~~~~Id~i-R~L~~~~----------------~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 94 DGASNRGIDDA-KRLKEAI----------------GYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred ecccccCHHHH-HHHHHHH----------------HhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 22212122111 1111111 111112356799999997652 2333433332222345555555
Q ss_pred CC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 003996 291 RD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP-IALTTVARALR 358 (780)
Q Consensus 291 R~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~L~ 358 (780)
.+ ..+... ......+++.+++.++....+.+.+...... --.+.+..|++.++|.+ .|+..+..++.
T Consensus 157 t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 157 TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred CChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44 444432 2223478899999999999998866432211 12357788999999965 67777665543
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=6.6e-05 Score=75.51 Aligned_cols=153 Identities=19% Similarity=0.220 Sum_probs=93.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.|+|..|+|||.|++.+++....+ -..++|++... +... ...+.+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~-- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQY-- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhhC--
Confidence 578899999999999999999876543 24567776532 1110 11233334332
Q ss_pred EEEEEeCCCCc---cCccc-cCCCCCC-CCCCcEEEEEeCChHH-H--------hhcCCCceEecCCCCHHHHHHHHHHH
Q 003996 257 ILVILDNIWKH---LDLDT-VGIPFGN-DHEGCRLLLTARDINV-L--------LSMGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 257 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~IlvTTR~~~v-~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
=+||+||+... ..|+. +...+-. ...|..||+|++.... . ..+.....+++++++.++-.+++..+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 26889999643 24433 2222211 1236678888875321 1 12333467889999999999999966
Q ss_pred cCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 323 NGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 323 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
+.... -.--.++..-|++.+.|..-.+..+-..|
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 54221 11114678888888888766665544443
No 94
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.01 E-value=3.6e-06 Score=79.42 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=8.1
Q ss_pred ccCccEEeeccCccCccccchhhHhhccCCcEEEEe
Q 003996 654 FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIR 689 (780)
Q Consensus 654 l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~ 689 (780)
+.+|+.|++++|. ++.+ +.+..|++|+.|.++
T Consensus 41 l~~L~~L~Ls~N~-I~~l---~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKL---EGLPGLPRLKTLDLS 72 (175)
T ss_dssp -TT--EEE-TTS---S-----TT----TT--EEE--
T ss_pred hcCCCEEECCCCC-Cccc---cCccChhhhhhcccC
Confidence 4455555555554 4443 233445555555554
No 95
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00015 Score=83.14 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=109.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL 231 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 231 (780)
....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++......... ....++.....+.|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 456789999999999988886554 5568999999999999999998764321100 000111122222222211
Q ss_pred CCCC---C--chhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC-hHHHhh-
Q 003996 232 GLEL---S--DEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD-INVLLS- 298 (780)
Q Consensus 232 ~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~~- 298 (780)
+.+. + .....+.+..+.+.+. ..++-++|+|+++... ..+.+...+......+.+|++|.+ ..+...
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1100 0 0000111122222221 1356789999986542 233343333222345566655543 333322
Q ss_pred cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 299 MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 299 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
......+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+.....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2223478899999999998888876532211 1135778999999998865554443
No 96
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.00055 Score=72.27 Aligned_cols=203 Identities=11% Similarity=0.119 Sum_probs=124.6
Q ss_pred CcccccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
.+..+.||+.+++.+.+|+. ....+.+-|.|-+|.|||.+...++.+......=..+++++...-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45578899999999999886 34567888999999999999999998876532222457777666667778888888
Q ss_pred HHhC-CCCCchhHHHHHHHHHHHHhcCC-eEEEEEeCCCCccC--ccccCCCC-CCCCCCcEEEEEeCCh--HHH----h
Q 003996 229 EKLG-LELSDEAEYRRASRLYERLKNEN-KILVILDNIWKHLD--LDTVGIPF-GNDHEGCRLLLTARDI--NVL----L 297 (780)
Q Consensus 229 ~~l~-~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~l~~~l-~~~~~gs~IlvTTR~~--~v~----~ 297 (780)
..+- .........+.+..+..+..+.+ .+|+|+|.++.... -..+...| .+.-.++++|+.---. +.. .
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 7761 11111122445556666666544 79999999864321 11111111 1223456654432211 111 1
Q ss_pred hcC-----CCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 298 SMG-----SKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 298 ~~~-----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
.+. ....+...|.+.++-.++|..++.............+.+++++.|.-=-+..+-.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLd 370 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALD 370 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHH
Confidence 111 2346778899999999999999875444444444555556666554433333333
No 97
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=6.1e-05 Score=88.77 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC---C-CEEEEEEeCCCCCHHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL---F-DRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
..++++||++++..+++.|......-+.++|++|+|||++|+.+++....... + +..+|. + +...+...
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~-- 252 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG-- 252 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh--
Confidence 34678999999999999888666667789999999999999999998743221 1 334442 1 11111100
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------CccccCCCCCCCCCCcEEEEEeCChHHHh-
Q 003996 229 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL----------DLDTVGIPFGNDHEGCRLLLTARDINVLL- 297 (780)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~- 297 (780)
.... ......+..+.+.+...++.+|++|+++... +...+..+.... ..-++|-+|...+...
T Consensus 253 ----~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 ----TKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ----cccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHHHHH
Confidence 0000 1122334455555544467999999986331 111222222111 1234454444322111
Q ss_pred ------hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 298 ------SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 298 ------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
.......+.+++++.++..+++....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11123478999999999999998654
No 98
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00021 Score=81.28 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=106.1
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE-eCCCCCHHHHHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE-VSQTPDIKKIQGEIAE 229 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~ 229 (780)
.....++|.+..++.|.+++..+.+ ..+.++|+.|+||||+|+.+++.......++.-.|.. +..........+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3456788999999999998887665 4588999999999999999998765422111001110 0001111111111110
Q ss_pred HhCCC-----CCchhHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE-EeCChHHHh
Q 003996 230 KLGLE-----LSDEAEYRRASRLYERL----KNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL-TARDINVLL 297 (780)
Q Consensus 230 ~l~~~-----~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv-TTR~~~v~~ 297 (780)
.-..+ .......+.+..+.+.+ ..+++-++|+|+++... ..+.+...+-.....+.+|+ |++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00000 00000011122222222 11345688999987553 23333333322233455444 444444443
Q ss_pred h-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHH
Q 003996 298 S-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIA 349 (780)
Q Consensus 298 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 349 (780)
. ......+++.+++.++....+.+.+...... --.+.+..|++.++|..--
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRD 224 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHH
Confidence 2 3345689999999999988888765422111 1235778899999996553
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=82.65 Aligned_cols=181 Identities=12% Similarity=0.155 Sum_probs=109.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhc---------------------cCCCCEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASE---------------------NKLFDRVV 210 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~---------------------~~~F~~~~ 210 (780)
....++|.+...+.|..++..+.. ..+.++|+.|+||||+|+.+.+.... ..+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 456788999999999999987665 45889999999999999998886531 123442 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv 288 (780)
.+..+....+.++ ++++.++.... ..+++-++|+|++.... .++.+...+.....++.+|+
T Consensus 94 ~ld~~~~~~vd~I-r~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDDI-RNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHHH-HHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3333322223222 22222221110 01245688999987653 34444333333334555554
Q ss_pred -EeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 289 -TARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 289 -TTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
||+...+... ......+++.+++.++....+.+.+...... --.+.+..|++.++|...-+..
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 5454444442 2334578999999999999998766532211 1235678899999997754433
No 100
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.0002 Score=79.54 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=109.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCC------------------C-CEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKL------------------F-DRVVF 211 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~------------------F-~~~~w 211 (780)
.....++|.+...+.+..++..+... ++.++|+.|+||||+|+.+.+..-.... + ..++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34567889999999999988866654 5689999999999999999887632110 1 11233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEE
Q 003996 212 SEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 212 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvT 289 (780)
+..+....+.++. +++..... .-..+++-++|+|+++... ..+.+...+-.....+++|++
T Consensus 91 ldaas~~gId~IR-elie~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 91 MDAASNRGIDDIR-ELIEQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred eccccccCHHHHH-HHHHHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 3222222222221 22221110 0001345689999997652 233332223222345666666
Q ss_pred eCCh-HHHh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 290 ARDI-NVLL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 290 TR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
|.+. .+.. .......+++.+++.++....+.+.+...... --.+.+..|++.++|.+.-+....
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6543 2222 12224588999999999999988766532211 124677899999999886555544
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00016 Score=82.62 Aligned_cols=178 Identities=13% Similarity=0.200 Sum_probs=105.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCC-----------------CCEEEEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKL-----------------FDRVVFSE 213 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-----------------F~~~~wv~ 213 (780)
.....++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++..-.... ++ ++++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieid 93 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMD 93 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEe
Confidence 3456788999999999999986654 56689999999999999999886533211 11 11221
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcE-E
Q 003996 214 VSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKH--LDLDTVGIPFGNDHEGCR-L 286 (780)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-I 286 (780)
......+.+ +..+.+.+. .+++-++|+|+++.. ..+..+...+-.....+. |
T Consensus 94 aasn~~vd~---------------------IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 94 AASNNGVDE---------------------IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred ccccCCHHH---------------------HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 111111111 122222222 235568999998754 233333333322223444 4
Q ss_pred EEEeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 287 LLTARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 287 lvTTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
++|++...+... ......+.+.+++.++....+...+...... --.+.+..|++.++|.+.-+..
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 455555555432 3334589999999999998888765422111 1135677899999997654433
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=8.2e-05 Score=82.04 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=103.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++... .....+.+.+.. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~------~~~~~~~~~~~~--~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH------KEIEQFKNEICQ--N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh------hHHHHHHHHhcc--C
Confidence 56889999999999999999997654322234555443 456666666553210 123344444433 4
Q ss_pred EEEEEeCCCCcc---Ccc-ccCCCCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEecCCCCHHHHHHHHHHH
Q 003996 257 ILVILDNIWKHL---DLD-TVGIPFGN-DHEGCRLLLTARDI---------NVLLSMGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 257 ~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
-+||+||+.... .+. .+...+-. ...|..||+|+... .+...+...-.+.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996542 121 12111110 12344688886542 12223444567889999999999999998
Q ss_pred cCCCCC-CcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 323 NGDDVE-NCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 323 ~~~~~~-~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
+..... ..--+++..-|++.++|.|..+.-+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 753221 12235788899999999998877666444
No 103
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.95 E-value=4.4e-06 Score=94.24 Aligned_cols=228 Identities=17% Similarity=0.184 Sum_probs=145.6
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF- 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L- 583 (780)
...+++....|.+..+.......++.++.+..+.. ..+| +.+..+.+|..|+..+|.+..++. .|...++|++|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l---~~lp-~wi~~~~nle~l~~n~N~l~~lp~-ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL---SNLP-EWIGACANLEALNANHNRLVALPL-RISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhh---hcch-HHHHhcccceEecccchhHHhhHH-HHhhhhhHHHHH
Confidence 35677777777665444445567899999987776 3677 678999999999999999987664 67777777777
Q ss_pred hhc--cc-CCC-----CCC---CccC-CH---------------HHHhccccccc-cccccccccccccccccccccccc
Q 003996 584 CRE--VK-TPS-----TSP---NRQE-SQ---------------EELTASSDEIS-SDTSTLLFNEKVVLPNLEALELNA 635 (780)
Q Consensus 584 ~~~--l~-~P~-----~~l---~~~~-~l---------------~~L~~~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~ 635 (780)
+.. ++ +|. +++ .... .| .-|=.++..+. .. .-.-..++.|+.|.+.+
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-----~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-----SYEENNHAALQELYLAN 368 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-----cccchhhHHHHHHHHhc
Confidence 221 21 132 111 1100 00 00000111110 00 01123467789999999
Q ss_pred ccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcc------------
Q 003996 636 INADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRT------------ 703 (780)
Q Consensus 636 ~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~------------ 703 (780)
|.+++- -+| -+..+.+|+.|+|+++. |..+| -..+.+|+.|+.|.+++ +.++.++..-..
T Consensus 369 N~Ltd~----c~p-~l~~~~hLKVLhLsyNr-L~~fp-as~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 369 NHLTDS----CFP-VLVNFKHLKVLHLSYNR-LNSFP-ASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred Cccccc----chh-hhccccceeeeeecccc-cccCC-HHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCC
Confidence 888752 333 26788999999999986 88885 45788999999999997 667777642110
Q ss_pred --cccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCC
Q 003996 704 --DQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKI 752 (780)
Q Consensus 704 --~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L 752 (780)
...+.+..+|+|+.++++. .+|..+..+.. ...|.|+.|+++|.+.+
T Consensus 441 ~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~-~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 441 QLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEA-LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ceeechhhhhcCcceEEeccc-chhhhhhhhhh-CCCcccceeeccCCccc
Confidence 1113455566788888865 46776632222 23478999999998865
No 104
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.0002 Score=79.03 Aligned_cols=179 Identities=14% Similarity=0.188 Sum_probs=104.2
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC---------------------CCCEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK---------------------LFDRVV 210 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~---------------------~F~~~~ 210 (780)
....++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+.+...... +++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 456788999999999999886665 5688999999999999999988764321 122 12
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv 288 (780)
++.......+.++ +++.+.+. ..-...++-++|+|++.... ..+.+...+-....++.+|+
T Consensus 94 ~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 94 EIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 2221111112221 11221111 00011356788999986442 22233223322233555666
Q ss_pred EeCC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHH
Q 003996 289 TARD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIAL 350 (780)
Q Consensus 289 TTR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 350 (780)
+|.. ..+... ......+++.+++.++....+.+.+...... --.+.+..|++.++|.+.-+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDA 219 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 5543 333222 2234578999999999998888765422111 12357788999999976433
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00035 Score=77.69 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=105.7
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhcc-------------------CCCCEEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASEN-------------------KLFDRVVFS 212 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 212 (780)
....++|.+.....+.+++..+.. ..+.++|+.|+||||+|+.++...... ..|..++++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 455788999999999999986554 456789999999999999998865321 011123333
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEe
Q 003996 213 EVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTA 290 (780)
Q Consensus 213 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTT 290 (780)
..+....+.++ +.|...+ ...-..+++-++|+|+++... ..+.+...+........+|++|
T Consensus 94 daas~~gvd~i-r~I~~~~----------------~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 94 DAASNRGIDDI-RALRDAV----------------SYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred eCccCCCHHHH-HHHHHHH----------------HhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 32222222211 1111111 000011356799999987542 2333332332223344454444
Q ss_pred -CChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 291 -RDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 291 -R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
+...+... ......+.+.+++.++....+.+.+..... .--.+.+..|++.++|.+..+....
T Consensus 157 t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 157 TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43333322 223457889999999999888886642221 1123567788899999776554443
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.94 E-value=9.9e-05 Score=88.10 Aligned_cols=156 Identities=14% Similarity=0.229 Sum_probs=92.4
Q ss_pred cccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC---C-CEEEEEEeCCCCCHHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL---F-DRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
..+++||+++++++++.|......-+.++|++|+|||++|+.++........ . +..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 4578999999999999998666666789999999999999999988653211 1 234442 1 1111110
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------CccccCCCCCCCCCCcEEEEEeCChHHHh---
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL---------DLDTVGIPFGNDHEGCRLLLTARDINVLL--- 297 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~--- 297 (780)
|....+ .-.+.+..+.+.+...++.+|++|+++... +...+..+.... ..-++|.+|..+....
T Consensus 249 --g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHh
Confidence 111111 223344555555555568999999985321 111222222111 2345555555443311
Q ss_pred ----hcCCCceEecCCCCHHHHHHHHHHH
Q 003996 298 ----SMGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 298 ----~~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
.......+.++..+.++...++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122346788889999988887654
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.92 E-value=0.00019 Score=71.36 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=95.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
...+.|+|+.|+|||.|.+.+++.......-..+++++. .+....+...+.. .....+.+.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~~-- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLRS-- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHCT--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhhc--
Confidence 356889999999999999999998765422234666543 3455555554422 112345555554
Q ss_pred eEEEEEeCCCCccC---cccc-CCCCC-CCCCCcEEEEEeCCh---------HHHhhcCCCceEecCCCCHHHHHHHHHH
Q 003996 256 KILVILDNIWKHLD---LDTV-GIPFG-NDHEGCRLLLTARDI---------NVLLSMGSKDNFLIGNLNEEEAWRLFKI 321 (780)
Q Consensus 256 ~~LlVlDdv~~~~~---~~~l-~~~l~-~~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 321 (780)
-=+|++||++.... |+.. ...+- -...|.+||+|++.. +....+.....+++.+.+.++-..++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 35899999975532 2221 11110 012466899999642 2223445566899999999999999999
Q ss_pred HcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 322 MNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 322 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
.+....-. --+++++-|++.+.+..-.+..+-.
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 87622111 1246777888888776665554443
No 108
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.91 E-value=8e-05 Score=76.49 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=68.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
....+.++|++|+||||+|+.+++.......-....++.++. .++... .++ .. ......+.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~---~~g-----~~-~~~~~~~~~~a--- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGE---YIG-----HT-AQKTREVIKKA--- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhh---hcc-----ch-HHHHHHHHHhc---
Confidence 346788999999999999999998754321111112333322 111111 001 01 11112222221
Q ss_pred CeEEEEEeCCCCcc----------CccccCCCCCCCCCCcEEEEEeCChHHHh------hc--CCCceEecCCCCHHHHH
Q 003996 255 NKILVILDNIWKHL----------DLDTVGIPFGNDHEGCRLLLTARDINVLL------SM--GSKDNFLIGNLNEEEAW 316 (780)
Q Consensus 255 k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~------~~--~~~~~~~l~~L~~~e~~ 316 (780)
..-+|++|+++... ..+.+...+........+++++....... .+ .....+.+++++.++-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23588999997531 11222222222223334555554322211 11 11246889999999999
Q ss_pred HHHHHHcC
Q 003996 317 RLFKIMNG 324 (780)
Q Consensus 317 ~Lf~~~~~ 324 (780)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988765
No 109
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.90 E-value=9.8e-05 Score=78.44 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.... ....++.+. ..... .++.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~-i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDF-VRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHH-HHHHHH
Confidence 34556789999999999999886554 56777999999999999999887532 123444443 22221 111111
Q ss_pred HhCCCCCchhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc--Cc-cccCCCCCCCCCCcEEEEEeCChHHH-h-hcCCCc
Q 003996 230 KLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKHL--DL-DTVGIPFGNDHEGCRLLLTARDINVL-L-SMGSKD 303 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~-~~l~~~l~~~~~gs~IlvTTR~~~v~-~-~~~~~~ 303 (780)
. ...... ...+-+||+||+.... .. ..+...+.....++++|+||...... . ......
T Consensus 90 ~----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 R----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred H----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1 001110 1235689999997541 11 11221122233567888888653311 1 112223
Q ss_pred eEecCCCCHHHHHHHHHH
Q 003996 304 NFLIGNLNEEEAWRLFKI 321 (780)
Q Consensus 304 ~~~l~~L~~~e~~~Lf~~ 321 (780)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777778777766554
No 110
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.87 E-value=0.00013 Score=72.84 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=116.9
Q ss_pred ccCCCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCE-EEEEEeCCCCCHHHHHHHH
Q 003996 149 KSNKGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDR-VVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 149 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i 227 (780)
..|.....+.|.+..+..+.+.+.....++...+|++|.|||+-|..+++..-..+.|.+ +.=.++|....+.-+-..+
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 344566788999999999999998877899999999999999999999988766556654 3334555443322111100
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHh-----cCCe-EEEEEeCCCCc--cCccccCCCCCCCCCCcE-EEEEeCChHHHhh
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLK-----NENK-ILVILDNIWKH--LDLDTVGIPFGNDHEGCR-LLLTARDINVLLS 298 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-----~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-IlvTTR~~~v~~~ 298 (780)
...+++..... .-++ -.+|||+++.. +.|..+...+-+....++ |+||+--..+...
T Consensus 110 --------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 110 --------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred --------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 00111111110 0123 47889999866 567777655555455666 4444433332221
Q ss_pred -cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH
Q 003996 299 -MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI 348 (780)
Q Consensus 299 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 348 (780)
...-..++.++|.+++...-++..+......-+ .+..+.|++.++|--.
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR 225 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence 112236788999999999998888764332222 3577899999998543
No 111
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.84 E-value=6e-05 Score=80.92 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=72.1
Q ss_pred ccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH-HhCC
Q 003996 155 EAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE-KLGL 233 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~-~l~~ 233 (780)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+.+..+.- ..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy 252 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGF 252 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCe
Confidence 34667788899999888743 56778999999999999999998876667889999999998887776643311 0111
Q ss_pred CCCchhHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 003996 234 ELSDEAEYRRASRLYERLK-NENKILVILDNIWKH 267 (780)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 267 (780)
...... ....+..... ..++++||+|++...
T Consensus 253 ~~~~G~---f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 RRKDGI---FYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred EecCch---HHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000000 0111111111 136799999999644
No 112
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00055 Score=77.39 Aligned_cols=183 Identities=12% Similarity=0.151 Sum_probs=108.1
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC--------------------CCCEEE
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK--------------------LFDRVV 210 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~F~~~~ 210 (780)
.....++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++..-... +++ ++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~ 91 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VI 91 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eE
Confidence 3456788999999999999986654 4688999999999999999998764321 122 12
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE
Q 003996 211 FSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 211 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv 288 (780)
++.......+.++. ++.+. +...-..+++-++|+|+++... .++.+...+......+.+|+
T Consensus 92 ~idgas~~~vddIr-~l~e~----------------~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 92 EIDGASNTSVQDVR-QIKEE----------------IMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred EecCcccCCHHHHH-HHHHH----------------HHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 22111111121111 11111 1111112355689999987553 34444444433334555555
Q ss_pred EeC-ChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 289 TAR-DINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 289 TTR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
+|. ...+... ......+...+++.++....+.+.+..... +--.+.+..|++.++|.+..+...
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 554 3344332 223346889999999999888877642221 112457778999999988654443
No 113
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.83 E-value=1.1e-05 Score=82.66 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=53.7
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
+..+++|+.|+|++|.++++-.+ |+..+..++.|+|..+. +... .-..+..|..|+.|++.+.. ++.+..
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~-----aFe~~a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~N~-it~~~~-- 339 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDG-----AFEGAAELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYDNQ-ITTVAP-- 339 (498)
T ss_pred HhhcccceEeccCCCccchhhhh-----hhcchhhhhhhhcCcch-HHHH-HHHhhhccccceeeeecCCe-eEEEec--
Confidence 35577888888888777766554 66777777777777764 5554 22356677778888877633 433322
Q ss_pred cccccccccccCcccEEeccCCC
Q 003996 702 RTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
...+...+|.+|.+..+|
T Consensus 340 -----~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 340 -----GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -----ccccccceeeeeehccCc
Confidence 123334455666665443
No 114
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00077 Score=70.63 Aligned_cols=197 Identities=12% Similarity=0.150 Sum_probs=108.8
Q ss_pred ccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC-------------CCCEEEEEEeCCCCCH
Q 003996 155 EAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK-------------LFDRVVFSEVSQTPDI 220 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~~ 220 (780)
..++|.+...+.+.+.+..+.. ....++|+.|+||+++|..+.+..-... .+.-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999887664 7899999999999999999988753221 1122344432100000
Q ss_pred HHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC
Q 003996 221 KKIQGEIAEKLGLE--LSDEAEYRRASRLYERLKN----ENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD 292 (780)
Q Consensus 221 ~~i~~~i~~~l~~~--~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~ 292 (780)
..+-..-++..+.. ....-..+.+..+.+.+.. +++-++|+|+++... ..+.+...+-...+..-|++|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 00000111111110 0000011223344444432 456789999986553 222222222111123334445444
Q ss_pred hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 293 INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 293 ~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
+.+... ......+.+.+++.++..+.+.+........ .....++..++|.|..+.....
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHHHH
Confidence 444443 2334588999999999999999864321111 1135788999999976655433
No 115
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.81 E-value=4.4e-06 Score=82.13 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=89.2
Q ss_pred CCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHhc
Q 003996 526 CPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELTA 605 (780)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~ 605 (780)
...|.++.+++|... .+..+ ..-.+.+|+|++|.|.+....
T Consensus 283 Wq~LtelDLS~N~I~---~iDES-vKL~Pkir~L~lS~N~i~~v~----------------------------------- 323 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT---QIDES-VKLAPKLRRLILSQNRIRTVQ----------------------------------- 323 (490)
T ss_pred Hhhhhhccccccchh---hhhhh-hhhccceeEEeccccceeeeh-----------------------------------
Confidence 456777777766542 34333 366777888888888764322
Q ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcE
Q 003996 606 SSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQH 685 (780)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~ 685 (780)
.+..+++|+.|+|++|.+.++ -.|...|.|.+.|.|+++. +..+ +.+++|-+|..
T Consensus 324 ---------------nLa~L~~L~~LDLS~N~Ls~~------~Gwh~KLGNIKtL~La~N~-iE~L---SGL~KLYSLvn 378 (490)
T KOG1259|consen 324 ---------------NLAELPQLQLLDLSGNLLAEC------VGWHLKLGNIKTLKLAQNK-IETL---SGLRKLYSLVN 378 (490)
T ss_pred ---------------hhhhcccceEeecccchhHhh------hhhHhhhcCEeeeehhhhh-Hhhh---hhhHhhhhhee
Confidence 123456888888888877653 2356778888999988875 5555 67788888888
Q ss_pred EEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 686 LEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 686 L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
|++++ +.++.+... ..+|.+|+|++|.|.++|
T Consensus 379 LDl~~-N~Ie~ldeV------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 379 LDLSS-NQIEELDEV------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccccc-cchhhHHHh------cccccccHHHHHhhcCCC
Confidence 88885 456666542 467888999888888877
No 116
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.81 E-value=0.00045 Score=75.05 Aligned_cols=201 Identities=16% Similarity=0.267 Sum_probs=110.4
Q ss_pred CcccccchHHHHHHHHHHhh----c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT----D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 34567899999998887663 1 235678999999999999999999876532 222221
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------C------ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL----------D------LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~~ 281 (780)
.++.... .+ ........+++......+.+|++||++... . +..+...+. ...
T Consensus 199 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111110 01 011223344444444467899999997531 0 111111111 112
Q ss_pred CCcEEEEEeCChHHHh-h-c---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh-HHHHHH--
Q 003996 282 EGCRLLLTARDINVLL-S-M---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP-IALTTV-- 353 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~-- 353 (780)
.+..||.||...+... . . .....+.+++.+.++-.++|+.++.......+. ....+++.+.|.- --+..+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCCHHHHHHHHH
Confidence 3556777776543222 1 1 124578999999999999999887633222111 1345666666643 222222
Q ss_pred -HHHH--h-cC---CHHHHHHHHHHhcCC
Q 003996 354 -ARAL--R-NK---SLHEWKNALRELQTP 375 (780)
Q Consensus 354 -~~~L--~-~~---~~~~w~~~l~~l~~~ 375 (780)
|+.. + +. +.++...+++.....
T Consensus 347 eA~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 347 EAGMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 2222 1 11 566666666665433
No 117
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=7.1e-06 Score=85.10 Aligned_cols=162 Identities=18% Similarity=0.217 Sum_probs=93.2
Q ss_pred CCCCCccEEEeecCCCCCCcccch--HHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHH
Q 003996 524 FECPQLEFLYIDPQITFSEVNIPD--NFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQE 601 (780)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~i~~--~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~ 601 (780)
.++++||.+.+.+.... .+. .....++++|-||||+|-+.+-..
T Consensus 118 sn~kkL~~IsLdn~~V~----~~~~~~~~k~~~~v~~LdLS~NL~~nw~~------------------------------ 163 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE----DAGIEEYSKILPNVRDLDLSRNLFHNWFP------------------------------ 163 (505)
T ss_pred hhHHhhhheeecCcccc----ccchhhhhhhCCcceeecchhhhHHhHHH------------------------------
Confidence 36789999999876642 222 467899999999999986654211
Q ss_pred HHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhcc
Q 003996 602 ELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLE 681 (780)
Q Consensus 602 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~ 681 (780)
.......+|+|+.|.|+.|.+...... .. -..+++|+.|.|+.|. +..-.-...+..+|
T Consensus 164 ----------------v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~---~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 164 ----------------VLKIAEQLPSLENLNLSSNRLSNFISS-NT---TLLLSHLKQLVLNSCG-LSWKDVQWILLTFP 222 (505)
T ss_pred ----------------HHHHHHhcccchhcccccccccCCccc-cc---hhhhhhhheEEeccCC-CCHHHHHHHHHhCC
Confidence 112345677777777777665432221 00 2356778888888886 44221123445678
Q ss_pred CCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccC
Q 003996 682 QLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 749 (780)
Q Consensus 682 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 749 (780)
+|+.|.+.....+ +... .+-..+..|+.|+|++++ +...+-..-.++||.|..|.+..|
T Consensus 223 sl~~L~L~~N~~~--~~~~------~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 223 SLEVLYLEANEII--LIKA------TSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred cHHHhhhhccccc--ceec------chhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc
Confidence 8888877754311 1110 122355666667776643 333322223356666666655444
No 118
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.80 E-value=0.00082 Score=69.18 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=104.1
Q ss_pred cccccchHHHHHHHHHHhhcCC---eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALTDAN---VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
.+.|.+|+.++..+...+.+.. +..|.|+|.+|.|||.+++.+.+..... .+|+++-..++.+.++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHH
Confidence 3467899999999999887433 3556899999999999999999987432 5899999999999999999999
Q ss_pred hCC-CCCchhHH---HHH----HHHHH--HHhc-CCeEEEEEeCCCCccCccccCCC----C--CCCCCCcEEEEEeCC-
Q 003996 231 LGL-ELSDEAEY---RRA----SRLYE--RLKN-ENKILVILDNIWKHLDLDTVGIP----F--GNDHEGCRLLLTARD- 292 (780)
Q Consensus 231 l~~-~~~~~~~~---~~~----~~l~~--~l~~-~k~~LlVlDdv~~~~~~~~l~~~----l--~~~~~gs~IlvTTR~- 292 (780)
++. +.+..... +.. ..+.+ ...+ ++.++||||+++...+.+.+.-+ + .-..+...|+...-.
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 862 22221111 111 12222 1111 35799999999766543332110 0 011223333332221
Q ss_pred hHHHh-hcCCCc--eEecCCCCHHHHHHHHHHH
Q 003996 293 INVLL-SMGSKD--NFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 293 ~~v~~-~~~~~~--~~~l~~L~~~e~~~Lf~~~ 322 (780)
+.... .++... ++..+.-+.+|...++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22222 234433 5567889999999999764
No 119
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0007 Score=77.46 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=107.6
Q ss_pred CcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL 231 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 231 (780)
....++|.+.....|..++..+.. ..+.++|+.|+||||+|+.+++.......... ....+......+.+....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCC
Confidence 456788999999999998886553 67889999999999999999998654211100 000111112222222111
Q ss_pred CCCC-----CchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC-hHHHhh-
Q 003996 232 GLEL-----SDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD-INVLLS- 298 (780)
Q Consensus 232 ~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~~- 298 (780)
..+. ......+.+..+.+... .+++-++|+|+++... .++.+...+-.....+.+|++|.+ ..+...
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1100 00000111222222221 1345688999997552 333343333222234554544443 333332
Q ss_pred cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 299 MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 299 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
......+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+.....
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2233477888999999888887766432111 1125678899999998865544433
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00075 Score=76.63 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=105.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|.+...+.+.+++..+. ...+.++|+.|+||||+|+.+.+........+ +...+....-+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 3356678999999999999988655 45677899999999999999988754321100 001111111111111
Q ss_pred HhCCC-----CCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE-EeCChHHHh
Q 003996 230 KLGLE-----LSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL-TARDINVLL 297 (780)
Q Consensus 230 ~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv-TTR~~~v~~ 297 (780)
....+ .......+.+..+.+... .++.-++|+|+++... .+..+...+........+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 00000 000000111122222211 2356788999997552 33333333322223444444 444443333
Q ss_pred h-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 298 S-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 298 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
. ......+...+++.++....+...+......- -.+.+..|++.++|.+..+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 2 22345788999999999998888764222111 13567788889988776443
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.77 E-value=0.00041 Score=71.90 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=70.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeE
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKI 257 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 257 (780)
.+.++|++|+||||+|+.+++...........-|+.++. .++...+ .|. ... ....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~~-~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TAP-KTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----chH-HHHHHHHHc---cCc
Confidence 588999999999999998887765432222222444442 1221111 111 111 122222222 236
Q ss_pred EEEEeCCCCc------cCc-----cccCCCCCCCCCCcEEEEEeCChHHHhhc--C------CCceEecCCCCHHHHHHH
Q 003996 258 LVILDNIWKH------LDL-----DTVGIPFGNDHEGCRLLLTARDINVLLSM--G------SKDNFLIGNLNEEEAWRL 318 (780)
Q Consensus 258 LlVlDdv~~~------~~~-----~~l~~~l~~~~~gs~IlvTTR~~~v~~~~--~------~~~~~~l~~L~~~e~~~L 318 (780)
+|++|++... ..| ..+...+.....+.+||+++......... . ....+.+++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 111 22222222333455666666543222111 1 134788999999999999
Q ss_pred HHHHcC
Q 003996 319 FKIMNG 324 (780)
Q Consensus 319 f~~~~~ 324 (780)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888764
No 122
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00035 Score=69.01 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=104.2
Q ss_pred CCCcccccchHHHHHHHHHHhh-----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALT-----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
|.....|+|.++..+++.=.+. +...-.+.++|++|.||||||.-+++...++ + -++.+....-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~---- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKP---- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccCh----
Confidence 3456789999888888766554 3457789999999999999999999998865 1 11111111100
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-C--------ccccCCC-CCCCCCCc-----------
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL-D--------LDTVGIP-FGNDHEGC----------- 284 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~--------~~~l~~~-l~~~~~gs----------- 284 (780)
.....+...|.. .=++.+|.++... . .+++..- ....++++
T Consensus 92 ----------------gDlaaiLt~Le~--~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 92 ----------------GDLAAILTNLEE--GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----------------hhHHHHHhcCCc--CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 111122222222 3455566664331 0 1111000 00111222
Q ss_pred EEEEEeCChHHHhhcC--CCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 003996 285 RLLLTARDINVLLSMG--SKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALR 358 (780)
Q Consensus 285 ~IlvTTR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (780)
-|=-|||.-.+...+. ...+.+++-.+.+|-.++..+.+..-.- .--.+.+.+|++...|-|.-..-+.+..+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 2445888654433221 1236778899999999999988752111 11235788999999999987666555544
No 123
>CHL00181 cbbX CbbX; Provisional
Probab=97.76 E-value=0.00053 Score=71.03 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=71.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++.... .|.. .. ....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~-----~~-~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT-----AP-KTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc-----hH-HHHHHHHHc---cC
Confidence 4578999999999999999988754322111112444442 1222111 1111 11 112222222 23
Q ss_pred EEEEEeCCCCcc------Cc-----cccCCCCCCCCCCcEEEEEeCChHHHhhc--------CCCceEecCCCCHHHHHH
Q 003996 257 ILVILDNIWKHL------DL-----DTVGIPFGNDHEGCRLLLTARDINVLLSM--------GSKDNFLIGNLNEEEAWR 317 (780)
Q Consensus 257 ~LlVlDdv~~~~------~~-----~~l~~~l~~~~~gs~IlvTTR~~~v~~~~--------~~~~~~~l~~L~~~e~~~ 317 (780)
-+|++|++.... ++ ..+...+.+...+.+||+++......... .....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 599999996420 11 11222222333456677776544332111 123478899999999999
Q ss_pred HHHHHcC
Q 003996 318 LFKIMNG 324 (780)
Q Consensus 318 Lf~~~~~ 324 (780)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888764
No 124
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.00034 Score=76.94 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=94.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.|+|+.|+|||+|++.+++....+..-..+++++. .++..++...+... ....+.+.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 46889999999999999999998765421234566643 33444455444321 12233344433 3
Q ss_pred EEEEEeCCCCccC---cc-ccCCCCCC-CCCCcEEEEEeCCh-HHH--------hhcCCCceEecCCCCHHHHHHHHHHH
Q 003996 257 ILVILDNIWKHLD---LD-TVGIPFGN-DHEGCRLLLTARDI-NVL--------LSMGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 257 ~LlVlDdv~~~~~---~~-~l~~~l~~-~~~gs~IlvTTR~~-~v~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
-+||+||++.... +. .+...+.. ...|..+|+|+... ... ..+.....+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975421 11 11111100 11345678877642 211 12333357889999999999999998
Q ss_pred cCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 323 NGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 323 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
+..... .--.++...|++.+.|..-.+.-
T Consensus 281 ~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 281 AEEEGL-ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 763221 11246788888888887765443
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00052 Score=78.30 Aligned_cols=187 Identities=13% Similarity=0.187 Sum_probs=106.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC--------------------CCCEE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK--------------------LFDRV 209 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~F~~~ 209 (780)
|.....++|.+...+.|..++..+.. ..+.++|+.|+||||+|+.+++.....+ +++ +
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-V 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 33556789999999999999887665 4568999999999999999988764321 111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEE
Q 003996 210 VFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLL 287 (780)
Q Consensus 210 ~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Il 287 (780)
+.+.......+.++ ++|...+.. .-...++-++|+|+++... ..+.+...+-.....+.+|
T Consensus 91 ~eid~~s~~~v~~i-r~l~~~~~~----------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI 153 (576)
T PRK14965 91 FEIDGASNTGVDDI-RELRENVKY----------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI 153 (576)
T ss_pred eeeeccCccCHHHH-HHHHHHHHh----------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 11111111122221 122211110 0011245688999997552 2333322222222355555
Q ss_pred E-EeCChHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHH
Q 003996 288 L-TARDINVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP-IALTTVARA 356 (780)
Q Consensus 288 v-TTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~ 356 (780)
+ ||....+... ......+.+.+++.++....+...+...... --.+.+..|++.++|.. .|+..+-..
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 5544545432 2234478899999999988887765422111 11356778899999866 454444333
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.72 E-value=0.00051 Score=74.86 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=88.6
Q ss_pred CcccccchHHHHHHHHHHhh----c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT----D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....+.|.+..+++|.+.+. . ....-+.++|++|+|||++|+.+++..... | +.+..+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se--- 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE--- 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch---
Confidence 44567788888888877663 1 234568899999999999999999976532 3 1121111
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 281 (780)
+... .++ . .......+++......+.+|+||+++.... +..+...+. ...
T Consensus 253 ---L~~k---~~G-----e-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 ---LIQK---YLG-----D-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ---hhhh---hcc-----h-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1110 000 0 112233444444445688999999753210 000111110 112
Q ss_pred CCcEEEEEeCChHHHhh--c---CCCceEecCCCCHHHHHHHHHHHcC
Q 003996 282 EGCRLLLTARDINVLLS--M---GSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
.+.+||+||...+.... . .....+.++..+.++..++|..++.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 35678888876544331 1 1245788999999999999998765
No 127
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.70 E-value=0.00045 Score=82.82 Aligned_cols=157 Identities=10% Similarity=0.139 Sum_probs=91.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCC----CEEEE-EEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLF----DRVVF-SEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~i~~~i 227 (780)
...+++||+.++.+++..|.......+.++|++|+|||++|+.++++....... ...+| +.++ .++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh--
Confidence 346789999999999999987666677799999999999999999876432111 22233 2221 1110
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC---------ccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKN-ENKILVILDNIWKHLD---------LDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
+.... .........+.+.+.. +++.+|++|+++.... ...+..+.... ..-++|-+|..+..-.
T Consensus 243 ----~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 ----GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDEYRK 316 (852)
T ss_pred ----cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHHHHH
Confidence 00111 1122234444444432 3589999999974321 11222222221 2234555555443211
Q ss_pred -------hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 298 -------SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 298 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
.......+.++..+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11223467899999999999987654
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.68 E-value=0.00034 Score=83.53 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=90.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC----CC-EEEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL----FD-RVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~-~~~wv~vs~~~~~~~i~~~i 227 (780)
...+++||+.++.++++.|.......+.++|++|+|||++|+.+......... .. .++++.++.- ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a-- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA-- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh--
Confidence 45679999999999999998766667789999999999999999988643211 12 2333333321 00
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc---------CccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLK-NENKILVILDNIWKHL---------DLDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
+..... ........+.+.+. ..++.+|++|+++... +...+..|.... ..-++|-+|..+....
T Consensus 248 ----g~~~~g-~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ----GAKYRG-EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQ 321 (857)
T ss_pred ----ccchhh-hhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHHHHH
Confidence 000001 11222333333332 2467999999986542 112232333222 2345555555443211
Q ss_pred -------hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 298 -------SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 298 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
.......+.+...+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11122356677778899999887654
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.64 E-value=0.00092 Score=73.97 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=90.2
Q ss_pred CcccccchHHHHHHHHHHhhc-------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccC---CCCEEEEEEeCC
Q 003996 153 GYEAFESRVSTLKSIQNALTD-------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENK---LFDRVVFSEVSQ 216 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~ 216 (780)
....+.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.....- .+....|+.+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345677888888888776531 2345688999999999999999999875321 112344555443
Q ss_pred CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH----HhcCCeEEEEEeCCCCcc---------C-----ccccCCCCC
Q 003996 217 TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYER----LKNENKILVILDNIWKHL---------D-----LDTVGIPFG 278 (780)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~k~~LlVlDdv~~~~---------~-----~~~l~~~l~ 278 (780)
.. + +.. ..... ......+++. ...+++++|+||+++... + +..+...+.
T Consensus 260 ~e----L----l~k----yvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 PE----L----LNK----YVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred hh----h----ccc----ccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 11 1 100 00011 1111222222 223468999999997431 0 111211111
Q ss_pred C--CCCCcEEEEEeCChHHHh-h-c---CCCceEecCCCCHHHHHHHHHHHcCC
Q 003996 279 N--DHEGCRLLLTARDINVLL-S-M---GSKDNFLIGNLNEEEAWRLFKIMNGD 325 (780)
Q Consensus 279 ~--~~~gs~IlvTTR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 325 (780)
. ...+..||.||...+... . . .-...+.++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 113444566665443322 1 1 22446899999999999999998753
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0006 Score=75.22 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=104.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
...+.|+|++|+|||+|++.+++.......-..++|++. .++..++...+... ....+.+.+.. +
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~~-~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYRK-K 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHHh-c
Confidence 346899999999999999999998765321135677654 34555555554321 11223333332 3
Q ss_pred eEEEEEeCCCCcc---Cc-cccCCCCCC-CCCCcEEEEEeC-ChHHHh--------hcCCCceEecCCCCHHHHHHHHHH
Q 003996 256 KILVILDNIWKHL---DL-DTVGIPFGN-DHEGCRLLLTAR-DINVLL--------SMGSKDNFLIGNLNEEEAWRLFKI 321 (780)
Q Consensus 256 ~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IlvTTR-~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~ 321 (780)
.-+|++||+.... .+ +.+...+.. ...|..||+||. ...-.. .+.....+.+++.+.+.-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 112111110 112446888874 332211 233445788999999999999998
Q ss_pred HcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh------cC--CHHHHHHHHHHh
Q 003996 322 MNGDDVENCKFKSTAINVAQACGGLPIALTTVARALR------NK--SLHEWKNALREL 372 (780)
Q Consensus 322 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 372 (780)
.+..... .--.++...|++.+.|.--.+.-+-..|. ++ +...-+.++..+
T Consensus 275 ~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8753211 11246788888888876554443332221 22 666666666654
No 131
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=5.8e-05 Score=80.08 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=67.5
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
+..+.++..|++++++++.++ .+| ++|+.|.+++|.++..+| ..+ .++|+.|.+++|..+..+|..-
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP------~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLP------NELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCC------CCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccccccc
Confidence 334578889999988887764 245 579999999998888775 222 2588999999887776665311
Q ss_pred cc-----ccccccccc-CcccEEeccCCCCccccCCCCCccCC-cccceeecccCCCCC
Q 003996 702 RT-----DQVTAYFVF-PRVTTLKLDGLPELRCLYPGMHTSEW-PALKNLVACNCDKIT 753 (780)
Q Consensus 702 ~~-----~~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~-p~L~~L~i~~C~~L~ 753 (780)
.. .....++.+ ++|+.|.+.++.....+ ... ..+ ++|+.|.|.+|..+.
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~--~lp-~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQA--RID-NLISPSLKTLSLTGCSNII 170 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheecccccccccc--ccc-cccCCcccEEEecCCCccc
Confidence 00 000112223 23555554332111111 000 113 458888888888664
No 132
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.62 E-value=0.00072 Score=73.45 Aligned_cols=137 Identities=19% Similarity=0.171 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchh
Q 003996 160 RVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEA 239 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 239 (780)
|..-..++.+.+..... ++.|.|+-++||||+++.+....... .+++..-.......-+.+..
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH-----------
Confidence 44455566665544333 99999999999999997666654432 45554433211111111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHh------hcCCCceEecCCCCHH
Q 003996 240 EYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLL------SMGSKDNFLIGNLNEE 313 (780)
Q Consensus 240 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~------~~~~~~~~~l~~L~~~ 313 (780)
..+.+.- ..++..++||.|....+|......+.+..+. +|++|+-+..... ..+....+.+.||+..
T Consensus 85 -----~~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 85 -----RAYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHHHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 1111111 1156899999999999999877777666655 8888888755433 2344568899999999
Q ss_pred HHHHHHH
Q 003996 314 EAWRLFK 320 (780)
Q Consensus 314 e~~~Lf~ 320 (780)
|...+-.
T Consensus 158 Efl~~~~ 164 (398)
T COG1373 158 EFLKLKG 164 (398)
T ss_pred HHHhhcc
Confidence 9876543
No 133
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.62 E-value=2.1e-05 Score=80.54 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=40.6
Q ss_pred hccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEec-CCCcCcccccccCCChhH
Q 003996 504 LKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLT-RIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~-~~~~~~L~~L~i~~L~~L 580 (780)
+...--+.+..|.+..+|.. ..+++||.|.++.|..+ .|-++.|.+++.|-.|-+. +|+|+.|+.=-+++|..|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 34445555555555555543 24555555555555542 4444555555555433332 355555554236677777
Q ss_pred HHh
Q 003996 581 TRF 583 (780)
Q Consensus 581 ~~L 583 (780)
|.|
T Consensus 143 qrL 145 (498)
T KOG4237|consen 143 QRL 145 (498)
T ss_pred HHH
Confidence 766
No 134
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.61 E-value=0.00084 Score=72.65 Aligned_cols=173 Identities=12% Similarity=0.155 Sum_probs=96.2
Q ss_pred CcccccchHHHHHHHHHHhh----c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT----D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....+.|-+...++|.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+ ..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i--~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRV--VG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEE--eh---
Confidence 34567788888877776553 1 235678899999999999999999876432 2 122 11
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL------------D----LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 281 (780)
..+... .++ . .......++.......+.+|++|+++... . +..+...+. ...
T Consensus 213 -s~l~~k---~~g-----e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQK---YLG-----E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHH---hcc-----h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111111 111 1 11223344444455578999999986421 0 111111111 122
Q ss_pred CCcEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 282 EGCRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
.+..||+||...+... .. .-...+.++..+.++-.++|..+.......++. -..++++.+.|..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 3566888887654332 11 224568888889998888888765532211111 1335566665543
No 135
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.60 E-value=2.4e-06 Score=91.25 Aligned_cols=188 Identities=23% Similarity=0.334 Sum_probs=93.4
Q ss_pred EeecCcccccCCCC-CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccC
Q 003996 511 SLLNSSIHEVSEEF-ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKT 589 (780)
Q Consensus 511 sl~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~ 589 (780)
.++.|.+..+|... .+-.|.++.+..+.. -.+|.. +.++..|.+|||+.|.+..|+. .|+.|+ |+.|
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~---r~ip~~-i~~L~~lt~l~ls~NqlS~lp~-~lC~lp-Lkvl------ 148 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCI---RTIPEA-ICNLEALTFLDLSSNQLSHLPD-GLCDLP-LKVL------ 148 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccc---eecchh-hhhhhHHHHhhhccchhhcCCh-hhhcCc-ceeE------
Confidence 33444455555432 355666666665554 234433 4667777777777777666553 333332 1111
Q ss_pred CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCc
Q 003996 590 PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLK 669 (780)
Q Consensus 590 P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~ 669 (780)
+-+...+ ..++..++..+.|..|+.+.|++. .+|+.++.+.+|+.|.++.++ +.
T Consensus 149 --------------i~sNNkl-----~~lp~~ig~~~tl~~ld~s~nei~------slpsql~~l~slr~l~vrRn~-l~ 202 (722)
T KOG0532|consen 149 --------------IVSNNKL-----TSLPEEIGLLPTLAHLDVSKNEIQ------SLPSQLGYLTSLRDLNVRRNH-LE 202 (722)
T ss_pred --------------EEecCcc-----ccCCcccccchhHHHhhhhhhhhh------hchHHhhhHHHHHHHHHhhhh-hh
Confidence 0000000 112224445555666666666554 344446666666666666654 55
Q ss_pred cccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCC-CccCCcccceeeccc
Q 003996 670 YIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGM-HTSEWPALKNLVACN 748 (780)
Q Consensus 670 ~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~-~~~~~p~L~~L~i~~ 748 (780)
++| +.+..|| |..|+++ |+.+..||. .+..+..|++|.|.++| |.+=|..+ ..|...--+.|++.-
T Consensus 203 ~lp--~El~~Lp-Li~lDfS-cNkis~iPv--------~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 203 DLP--EELCSLP-LIRLDFS-CNKISYLPV--------DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred hCC--HHHhCCc-eeeeecc-cCceeecch--------hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchh
Confidence 554 4444443 5566665 666666664 33445566666666655 33332111 112233344555666
Q ss_pred C
Q 003996 749 C 749 (780)
Q Consensus 749 C 749 (780)
|
T Consensus 270 ~ 270 (722)
T KOG0532|consen 270 C 270 (722)
T ss_pred c
Confidence 6
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00016 Score=84.25 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=92.2
Q ss_pred cccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccC-C---CCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENK-L---FDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
..+++||++++.++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...++ .
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll----a 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL----A 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh----c
Confidence 457899999999999988865555667899999999999999998753321 1 13444421 111111 0
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------CccccCCCCCCCCCCcEEEEEeCChHHHh--
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL----------DLDTVGIPFGNDHEGCRLLLTARDINVLL-- 297 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~-- 297 (780)
+.... .........+.+.+...++.+|++|+++... +...+..++... ..-+||-+|...+...
T Consensus 256 --G~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 11111 1222334445555544467899999996431 111122222221 2344555555433211
Q ss_pred -----hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 298 -----SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 298 -----~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
.......+.+++.+.++..+++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11223478999999999999998654
No 137
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0024 Score=65.42 Aligned_cols=199 Identities=18% Similarity=0.251 Sum_probs=119.7
Q ss_pred ccCCCcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC
Q 003996 149 KSNKGYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS 215 (780)
Q Consensus 149 ~~~~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 215 (780)
.+...+..+-|-++.+++|.+.+. =+.++=|.++|++|.|||-||+.|+++-... | +.|.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEec
Confidence 333456667788888888888764 1346778899999999999999999987654 4 3333
Q ss_pred CCCCHHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccC---C
Q 003996 216 QTPDIKKIQGEIAEK-LGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVG---I 275 (780)
Q Consensus 216 ~~~~~~~i~~~i~~~-l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~---~ 275 (780)
.. ++.+. +|. -......+++.-+.+.+.+|.+|.++.... .-++. .
T Consensus 218 gS--------ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 218 GS--------ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred cH--------HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 31 22221 121 123456677777778899999999864311 11111 2
Q ss_pred CCCCCCCCcEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHcCC--CCCCcchHHHHHHHHHHhCCCh-
Q 003996 276 PFGNDHEGCRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNGD--DVENCKFKSTAINVAQACGGLP- 347 (780)
Q Consensus 276 ~l~~~~~gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~l~~~~~~I~~~c~GlP- 347 (780)
.| +....-|||..|...+... .-.-+..++++.-+.+.-.++|+=++.. -..+-+++ .+++.|.|.-
T Consensus 284 GF-D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sG 358 (406)
T COG1222 284 GF-DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSG 358 (406)
T ss_pred CC-CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCch
Confidence 22 2245678998887655443 1122446777655555556667666652 22333444 5666666654
Q ss_pred ---HHHHHHHHHHh---cC---CHHHHHHHHHHhc
Q 003996 348 ---IALTTVARALR---NK---SLHEWKNALRELQ 373 (780)
Q Consensus 348 ---Lai~~~~~~L~---~~---~~~~w~~~l~~l~ 373 (780)
.|+.+=|++++ .+ +.+++..+.++..
T Consensus 359 AdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 359 ADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 45556666665 22 6677777666643
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.58 E-value=0.00031 Score=69.41 Aligned_cols=135 Identities=15% Similarity=-0.001 Sum_probs=79.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. . +... ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~------------------------~---~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN------------------------E---EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc------------------------h---hHHh--cC
Confidence 56899999999999999987765431 1111 00000 0 0111 23
Q ss_pred EEEEEeCCCCccC--ccccCCCCCCCCCCcEEEEEeCChH-------HHhhcCCCceEecCCCCHHHHHHHHHHHcCCCC
Q 003996 257 ILVILDNIWKHLD--LDTVGIPFGNDHEGCRLLLTARDIN-------VLLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDV 327 (780)
Q Consensus 257 ~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~IlvTTR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 327 (780)
-+|++||++...+ +-.+...+ ...|..||+|++... ....+....++.+++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 5788899973321 11111111 134668999987432 222344455899999999998888888765221
Q ss_pred CCcchHHHHHHHHHHhCCChHHHHH
Q 003996 328 ENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 328 ~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
-.--+++.+-|++.+.|.--.+.-
T Consensus 165 -l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 -VTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred -CCCCHHHHHHHHHHccCCHHHHHH
Confidence 111246777888888776554443
No 139
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.57 E-value=9.1e-06 Score=79.99 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=84.1
Q ss_pred hhhhccceEEEeecCcccccCCCCC-CCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChh
Q 003996 501 EDALKKCYAISLLNSSIHEVSEEFE-CPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPK 579 (780)
Q Consensus 501 ~~~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~ 579 (780)
.+.|+.+..+.++.|.+..+..+.. .|++|.|.++.|... .+ .+ +..+.+|..||||+|.+.++.-+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~---~v-~n-La~L~~L~~LDLS~N~Ls~~~Gw------- 347 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR---TV-QN-LAELPQLQLLDLSGNLLAECVGW------- 347 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee---ee-hh-hhhcccceEeecccchhHhhhhh-------
Confidence 3567888889999999988877764 799999999988752 33 33 68899999999999987654321
Q ss_pred HHHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccE
Q 003996 580 VTRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTR 659 (780)
Q Consensus 580 L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~ 659 (780)
...+-|.++|.|.+|.++.+.. ++.|-+|..
T Consensus 348 ------------------------------------------h~KLGNIKtL~La~N~iE~LSG-------L~KLYSLvn 378 (490)
T KOG1259|consen 348 ------------------------------------------HLKLGNIKTLKLAQNKIETLSG-------LRKLYSLVN 378 (490)
T ss_pred ------------------------------------------HhhhcCEeeeehhhhhHhhhhh-------hHhhhhhee
Confidence 1123455555555555554322 445555666
Q ss_pred EeeccCccCccccchhhHhhccCCcEEEEecC
Q 003996 660 LIVWGCDKLKYIFSASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 660 L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 691 (780)
|+++++. ++++..+..+++||+|+.|.+.+.
T Consensus 379 LDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 379 LDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 6665553 444444455566666666665543
No 140
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.00022 Score=65.43 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=51.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.|+|++|+||||+++.++....... ..++++..+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998876542 23555555443322211111 11111111122222333445555554345
Q ss_pred EEEEEeCCCCccC
Q 003996 257 ILVILDNIWKHLD 269 (780)
Q Consensus 257 ~LlVlDdv~~~~~ 269 (780)
.++++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987644
No 141
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.56 E-value=3e-05 Score=82.56 Aligned_cols=123 Identities=16% Similarity=-0.017 Sum_probs=59.8
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccc---hhhHhhccCCcEEEEecCchhHHhh
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFS---ASTIQSLEQLQHLEIRLCKSLQEII 698 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~---~~~l~~L~~L~~L~l~~c~~l~~l~ 698 (780)
+..+++|++|+++++++..-.. ..++..+..+++|+.|++++|. +..... ...+..+++|++|++++|. +....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~ 237 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAG 237 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHH
Confidence 3345677778877766653100 0111123344678888888775 432210 1234456778888887764 22211
Q ss_pred ccCcccccccccccCcccEEeccCCCCccccC---CCCCccCCcccceeecccCC
Q 003996 699 SEDRTDQVTAYFVFPRVTTLKLDGLPELRCLY---PGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 699 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~---~~~~~~~~p~L~~L~i~~C~ 750 (780)
...-... -....++|++|++.+|. ++... -......+++|+.|++.+|+
T Consensus 238 ~~~l~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 238 AAALASA--LLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHH--HhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 0000000 00024678888887763 32100 01111234677777777665
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.55 E-value=0.0072 Score=59.54 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=40.2
Q ss_pred CcccccchHHHHHHHHHH----hhcCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 153 GYEAFESRVSTLKSIQNA----LTDANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~----L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
....++|-+...+.|++- +......-+.++|..|+|||++++.+.+....+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 456788988888777653 334456678899999999999999999988765
No 143
>PRK10536 hypothetical protein; Provisional
Probab=97.53 E-value=0.00075 Score=67.17 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=42.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVF 211 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~w 211 (780)
+...+.+|......+..++.+. .++.+.|++|+|||+||..+..+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3445678888888888888764 48999999999999999999886432233554443
No 144
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.53 E-value=0.00084 Score=74.80 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=104.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
...+.|+|++|+|||+|++.+++....+..-..+++++.. ++..++...+... ....+.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~-- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYRS-- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHhc--
Confidence 3568899999999999999999988754222345666543 2333444443211 12233444443
Q ss_pred eEEEEEeCCCCccC---c-cccCCCCCC-CCCCcEEEEEeCChH---------HHhhcCCCceEecCCCCHHHHHHHHHH
Q 003996 256 KILVILDNIWKHLD---L-DTVGIPFGN-DHEGCRLLLTARDIN---------VLLSMGSKDNFLIGNLNEEEAWRLFKI 321 (780)
Q Consensus 256 ~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~IlvTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 321 (780)
.-+||+||++.... + +.+...+.. ...|..||+||.... +...+.....+.+++.+.++-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999965321 1 112111100 112445788776431 122334445789999999999999999
Q ss_pred HcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh------cC--CHHHHHHHHHHh
Q 003996 322 MNGDDVENCKFKSTAINVAQACGGLPIALTTVARALR------NK--SLHEWKNALREL 372 (780)
Q Consensus 322 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~------~~--~~~~w~~~l~~l 372 (780)
.+.... ..--.++...|++.+.|..-.+.-+-..+. ++ +....+.+++.+
T Consensus 292 ~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 876321 111246788899988887765443322221 22 666666666654
No 145
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.52 E-value=0.0044 Score=73.71 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.8
Q ss_pred cccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 156 AFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.++|.++..+.|.+++. ....+++.++|++|+|||++|+.+++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46788888888888664 123458999999999999999999998753
No 146
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.0082 Score=58.94 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCc--h
Q 003996 162 STLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS-QTPDIKKIQGEIAEKLGLELSD--E 238 (780)
Q Consensus 162 ~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~--~ 238 (780)
+.+..+...+ .++.+++.++|.-|+|||.+.+......... .++-+.+. +..+...+...|+..+..+... .
T Consensus 38 e~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 3344444333 4556799999999999999999555544322 12223333 4567778888888888763221 1
Q ss_pred -hHHHHHHHHHHHHhcCCe-EEEEEeCCCCcc--Ccccc---CCCCCCCCCCcEEEEEeCC--------hHHHhhcCCCc
Q 003996 239 -AEYRRASRLYERLKNENK-ILVILDNIWKHL--DLDTV---GIPFGNDHEGCRLLLTARD--------INVLLSMGSKD 303 (780)
Q Consensus 239 -~~~~~~~~l~~~l~~~k~-~LlVlDdv~~~~--~~~~l---~~~l~~~~~gs~IlvTTR~--------~~v~~~~~~~~ 303 (780)
........+....+++++ ..+++||..... .++.+ ...--+...--+|+..-.. ......-....
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEE
Confidence 122233344445555566 999999986542 22211 1111111111123332221 11111111122
Q ss_pred e-EecCCCCHHHHHHHHHHHcCCCCCCcc--hHHHHHHHHHHhCCChHHHHHHHHH
Q 003996 304 N-FLIGNLNEEEAWRLFKIMNGDDVENCK--FKSTAINVAQACGGLPIALTTVARA 356 (780)
Q Consensus 304 ~-~~l~~L~~~e~~~Lf~~~~~~~~~~~~--l~~~~~~I~~~c~GlPLai~~~~~~ 356 (780)
. |.+.|++.++...++..+......+.. -.+....|.....|.|.+|+.++..
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 3 899999999999999888763332221 2356778999999999999987754
No 147
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.51 E-value=8.3e-05 Score=57.22 Aligned_cols=59 Identities=25% Similarity=0.273 Sum_probs=31.2
Q ss_pred ccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecC
Q 003996 626 PNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 626 ~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 691 (780)
|+|++|++++|+++.++.+ ++..+++|+.|+|++|. ++.++ ...+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~-----~f~~l~~L~~L~l~~N~-l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-----SFSNLPNLETLDLSNNN-LTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTT-----TTTTGTTESEEEETSSS-ESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHH-----HHcCCCCCCEeEccCCc-cCccC-HHHHcCCCCCCEEeCcCC
Confidence 3555666666555544332 34555666666666554 55553 124455556666655543
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0024 Score=67.30 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=87.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC--------------------CCCEEEEEEeC---CCCCHHHHHHHHHHHhC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK--------------------LFDRVVFSEVS---QTPDIKKIQGEIAEKLG 232 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~~~~~~~i~~~i~~~l~ 232 (780)
...+.++|+.|+||||+|..+++..--.. |.| ..|+.-. +...++++ +++.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~i-R~l~~~~~ 99 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQV-RELVSFVV 99 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHH-HHHHHHHh
Confidence 45688999999999999999988764321 122 2333211 11122221 11222211
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEecC
Q 003996 233 LELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDI-NVLLS-MGSKDNFLIG 308 (780)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~-~~~~~~~~l~ 308 (780)
..-..+++-++|+|+++... ..+.+...+-....++.+|+||.+. .+... ...-..+.+.
T Consensus 100 ----------------~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 100 ----------------QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred ----------------hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 11111234556779997652 2333322222222466677777664 33332 2334578999
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 309 NLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 309 ~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
+++.+++.+.+.+..... ..+.+..++..++|.|+.+..+
T Consensus 164 ~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998764211 1234567789999999765443
No 149
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.47 E-value=0.00023 Score=64.57 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=42.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC-eE
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN-KI 257 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 257 (780)
|.|+|++|+||||+|+.+++..... .+.++.+...+ . ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~--------------~-~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELIS--------------S-YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHT--------------S-STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----ccccccccccc--------------c-cccccccccccccccccccccce
Confidence 5799999999999999999997522 34444332110 0 11122233334444443333 89
Q ss_pred EEEEeCCCCc
Q 003996 258 LVILDNIWKH 267 (780)
Q Consensus 258 LlVlDdv~~~ 267 (780)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999644
No 150
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0084 Score=67.03 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=92.4
Q ss_pred ccccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
..-+|-++..++|++.|. .-+.++++++||+|||||.|++.+++....+ | +-++++.-.|..++-..=-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 455788999999999886 2345899999999999999999999988754 4 3355666555554422111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhc--CCeEEEEEeCCCCccC---------ccccCCC---------CCCCC-CCcE-E
Q 003996 229 EKLGLELSDEAEYRRASRLYERLKN--ENKILVILDNIWKHLD---------LDTVGIP---------FGNDH-EGCR-L 286 (780)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~---------~~~l~~~---------l~~~~-~gs~-I 286 (780)
..+|. .-.++.+.++. .++=+++||.++.... +-++..| +.... .=|+ +
T Consensus 398 TYIGa---------mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYIGA---------MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccc---------CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 11110 01123333322 3567888999864411 1111111 11100 1233 4
Q ss_pred EEEeCCh-H-H-HhhcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 287 LLTARDI-N-V-LLSMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 287 lvTTR~~-~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
.|||-|. + + ++.+....++++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444432 1 1 2245566799999999999999888875
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0019 Score=71.07 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=88.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.|+|+.|+|||+|++.+++..... ...+++++. ..+...+...+... ....+.+.+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 568899999999999999999987643 234555542 33444555444321 1122333332 34
Q ss_pred EEEEEeCCCCccC--c--cccCCCCCC-CCCCcEEEEEeCC-hH--------HHhhcCCCceEecCCCCHHHHHHHHHHH
Q 003996 257 ILVILDNIWKHLD--L--DTVGIPFGN-DHEGCRLLLTARD-IN--------VLLSMGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 257 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~IlvTTR~-~~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
-+|++||+..... + +.+...+-. ...|..||+||.. .. +...+.....+.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5889999865422 1 111111100 0134568888754 22 1123334468889999999999999988
Q ss_pred cCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 323 NGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 323 ~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
+..... .--.++..-|++.+.|.-
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCH
Confidence 753211 111356666777666543
No 152
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.00046 Score=78.43 Aligned_cols=204 Identities=11% Similarity=0.102 Sum_probs=104.2
Q ss_pred cCCCcccccchHHHHHHHHHHhhc-----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC---CCCHH
Q 003996 150 SNKGYEAFESRVSTLKSIQNALTD-----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ---TPDIK 221 (780)
Q Consensus 150 ~~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~ 221 (780)
.|.....++|.++.++++..|+.. ...+++.|+|++|+||||+++.++.... ++..-|++-.. ..+..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~ 154 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDH 154 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhccccccc
Confidence 344567789999999999998873 2345799999999999999999998654 22233322110 00111
Q ss_pred HHHHHHHHHhCCCCCchhH-HHHHHHHHHH---H---hcCCeEEEEEeCCCCcc-----CccccCC-CCCCCCCCcEEEE
Q 003996 222 KIQGEIAEKLGLELSDEAE-YRRASRLYER---L---KNENKILVILDNIWKHL-----DLDTVGI-PFGNDHEGCRLLL 288 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~-~~~~~~l~~~---l---~~~k~~LlVlDdv~~~~-----~~~~l~~-~l~~~~~gs~Ilv 288 (780)
.+...+..++......... .......... + ..+++.+|++|++.+.. .+..+.. .+...+.-.-|++
T Consensus 155 ~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I 234 (637)
T TIGR00602 155 KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFI 234 (637)
T ss_pred ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEE
Confidence 1112222222221111110 0111111111 1 12357899999995432 2333323 2222222223555
Q ss_pred EeCChH---------HH------h-hc--CCCceEecCCCCHHHHHHHHHHHcCCCC----CC--cchHHHHHHHHHHhC
Q 003996 289 TARDIN---------VL------L-SM--GSKDNFLIGNLNEEEAWRLFKIMNGDDV----EN--CKFKSTAINVAQACG 344 (780)
Q Consensus 289 TTR~~~---------v~------~-~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~----~~--~~l~~~~~~I~~~c~ 344 (780)
||.+.. .. . .. .....+...|++..+-.+.+.+.+.... .. -.-.+....|+..++
T Consensus 235 ~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~ 314 (637)
T TIGR00602 235 ITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCS 314 (637)
T ss_pred ecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCC
Confidence 553211 00 0 11 1223588999999997777776654211 11 011356677777887
Q ss_pred CChHHHHHHHHHH
Q 003996 345 GLPIALTTVARAL 357 (780)
Q Consensus 345 GlPLai~~~~~~L 357 (780)
|--..+...-.+.
T Consensus 315 GDiRsAIn~LQf~ 327 (637)
T TIGR00602 315 GDIRSAINSLQFS 327 (637)
T ss_pred ChHHHHHHHHHHH
Confidence 7655444444443
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.42 E-value=0.0033 Score=70.91 Aligned_cols=172 Identities=14% Similarity=0.160 Sum_probs=92.4
Q ss_pred CcccccchHHHHHHHHHHh---hc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNAL---TD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....+.|-+...+++.+.+ .. ...+-+.++|++|+|||++|+.+++..... | +.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~-----~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--e-----eeccH----
Confidence 4456778766655554433 21 123458899999999999999999875432 2 22221
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------c----cccCCCCC--CCCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD------------L----DTVGIPFG--NDHE 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~----~~l~~~l~--~~~~ 282 (780)
.++.... .+. .......+++......+.+|++||++.... + ..+...+. ....
T Consensus 122 ~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111110 010 111233444444444679999999964310 0 01111110 1223
Q ss_pred CcEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCC
Q 003996 283 GCRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGL 346 (780)
Q Consensus 283 gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 346 (780)
+..||.||....... .-.-...+.++..+.++-.++|..++......++ .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCC
Confidence 445666665543211 1123457889999999999999887753322211 1234777777773
No 154
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=2.1e-05 Score=77.58 Aligned_cols=177 Identities=17% Similarity=0.139 Sum_probs=89.7
Q ss_pred cceEEEeecCcccc--cCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCc-Cc--ccccccCCChh
Q 003996 506 KCYAISLLNSSIHE--VSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEF-GQ--LRSLTLGKLPK 579 (780)
Q Consensus 506 ~~r~lsl~~~~~~~--~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~-~~--L~~L~i~~L~~ 579 (780)
.+.|+.++...+.. +... ..|.+|+-|.+.+.... ..+-.. +.+-.+|+-|+|+.++- +. ++. -+.+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--D~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~l-l~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--DPIVNT-IAKNSNLVRLNLSMCSGFTENALQL-LLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--cHHHHH-HhccccceeeccccccccchhHHHH-HHHhhhh
Confidence 46777777666532 2111 25888888888876554 333333 57788899999988753 32 332 2445555
Q ss_pred HHHh-hhcccC--CCCCCCccCCHHHHhccccccccccccccccccccccccccccccc--ccccccccccCCCCccccc
Q 003996 580 VTRF-CREVKT--PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNA--INADEIWHYNQLPGMVPCF 654 (780)
Q Consensus 580 L~~L-~~~l~~--P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~--~~l~~l~~~~~lP~~~~~l 654 (780)
|+.| ..|... |. ++ -. .-.--++|..|+|+| .++..- .+..-....
T Consensus 262 L~~LNlsWc~l~~~~------------------Vt-----v~--V~hise~l~~LNlsG~rrnl~~s----h~~tL~~rc 312 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEK------------------VT-----VA--VAHISETLTQLNLSGYRRNLQKS----HLSTLVRRC 312 (419)
T ss_pred HhhcCchHhhccchh------------------hh-----HH--HhhhchhhhhhhhhhhHhhhhhh----HHHHHHHhC
Confidence 5555 111111 11 00 00 001123455566665 122110 000002344
Q ss_pred cCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCC
Q 003996 655 QSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGL 723 (780)
Q Consensus 655 ~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~ 723 (780)
++|.+|+|++|-.++.- -+..+.+++.|++|.++.|+.+---.. -.+...|+|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~-------~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETL-------LELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHe-------eeeccCcceEEEEeccc
Confidence 66777777776655542 234556667777777776665421111 13445666666666665
No 155
>CHL00176 ftsH cell division protein; Validated
Probab=97.39 E-value=0.0039 Score=71.56 Aligned_cols=170 Identities=15% Similarity=0.213 Sum_probs=93.5
Q ss_pred cccccchHHHHHHH---HHHhhcC---------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRVSTLKSI---QNALTDA---------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~~~~~~l---~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
...+.|.++..+++ ++++.+. ..+-+.++|++|+|||++|+.++...... |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 34566766555444 4444321 23568999999999999999998876432 2333211
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccCCCCC--CCCCC
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL------------D----LDTVGIPFG--NDHEG 283 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~g 283 (780)
++.... .+. .......+++......+++|++||++... . +..+...+. ....+
T Consensus 251 ~f~~~~---~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMF---VGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHh---hhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111000 010 11223344444455578999999996431 0 111211111 12235
Q ss_pred cEEEEEeCChHHHh-h-c---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC
Q 003996 284 CRLLLTARDINVLL-S-M---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG 345 (780)
Q Consensus 284 s~IlvTTR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 345 (780)
..||.||...+... . . .....+.++..+.++-.++++.++......+ ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 55666766544322 1 1 1245788888999999999988876422211 2345677777777
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0051 Score=69.16 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=94.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.|+|..|+|||.|++.+++.......-..+++++. .++..++...+... ....+.+.+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~~--~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYRE--M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhhc--C
Confidence 45899999999999999999998764321234566543 33444444433211 12233334433 3
Q ss_pred EEEEEeCCCCcc---Cccc-cCCCCCC-CCCCcEEEEEeCCh---------HHHhhcCCCceEecCCCCHHHHHHHHHHH
Q 003996 257 ILVILDNIWKHL---DLDT-VGIPFGN-DHEGCRLLLTARDI---------NVLLSMGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 257 ~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
=+|||||+.... .|+. +...+-. ...|..|||||+.. .+...+...-.+.+.+.+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 589999997542 2221 1111110 12345688888752 22234455668899999999999999988
Q ss_pred cCCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 003996 323 NGDDVENCKFKSTAINVAQACGGLPIALTT 352 (780)
Q Consensus 323 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 352 (780)
+....- .--.+++.-|++.+.+..-.+.-
T Consensus 459 a~~r~l-~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 459 AVQEQL-NAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHhcCC-CCCHHHHHHHHHhccCCHHHHHH
Confidence 763221 11246777788777766544433
No 157
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.32 E-value=0.0002 Score=76.23 Aligned_cols=92 Identities=18% Similarity=0.097 Sum_probs=59.2
Q ss_pred cccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhh----ccCCcEEEEecCchh----
Q 003996 623 VVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQS----LEQLQHLEIRLCKSL---- 694 (780)
Q Consensus 623 ~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~----L~~L~~L~l~~c~~l---- 694 (780)
..+++|++|+++++.+...... .++..+..+++|++|++++|. +........... .+.|+.|++++|.-.
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~-~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGAS-ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HhCCCCCEEeccCCccChHHHH-HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 3457999999998777543221 233346677899999999986 554321122223 379999999987532
Q ss_pred HHhhccCcccccccccccCcccEEeccCCC
Q 003996 695 QEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 695 ~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
..+.. ....+++|++|+++++.
T Consensus 268 ~~l~~--------~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 268 KDLAE--------VLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHH--------HHhcCCCccEEECCCCC
Confidence 12221 33456899999998863
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.006 Score=70.03 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=64.5
Q ss_pred cccchHHHHHHHHHHhh---------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 156 AFESRVSTLKSIQNALT---------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
.++|.++.++.+.+.+. +.+..+....||.|||||.||+.++...-... +..+-++.|..-.-. .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkH----s 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKH----S 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHH----H
Confidence 56899999999988876 23457888899999999999999998764221 334444444322111 1
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhcCCeE-EEEEeCCCCc
Q 003996 227 IAEKLGLELSDEAEYRRASRLYERLKNENKI-LVILDNIWKH 267 (780)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 267 (780)
+.+-+|.+..--...+ -..+.+..++ +|| +|.||++...
T Consensus 566 VSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 2233343322111111 3455666666 566 8889999755
No 159
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.31 E-value=0.0086 Score=70.66 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=84.9
Q ss_pred ccccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
...+|.++..+.|++++. .....++.++|++|+||||+|+.++...... |- -+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EE---EEEcCCCCCHHHhccchh
Confidence 457899999999998886 1245689999999999999999999876532 32 233444444433322111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-c-----cccCCCC------------C---CCCCCcEEE
Q 003996 229 EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-L-----DTVGIPF------------G---NDHEGCRLL 287 (780)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~-----~~l~~~l------------~---~~~~gs~Il 287 (780)
...|. .+. .....+.. ... ..-+++||.++.... . ..+...+ . -.-.+.-+|
T Consensus 397 ~~~g~-~~G----~~~~~l~~-~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS-MPG----KLIQKMAK-VGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC-CCc----HHHHHHHh-cCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11111 010 11111211 111 234788999864421 0 1111111 0 011233344
Q ss_pred EEeCChHHHh-hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 288 LTARDINVLL-SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 288 vTTR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
.|+....+.. .......+.+.+++.+|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4554332222 22334578899999999988887764
No 160
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.022 Score=59.59 Aligned_cols=176 Identities=11% Similarity=0.151 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhcc-------------------CCCCEEEEEEeC---CCC
Q 003996 162 STLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASEN-------------------KLFDRVVFSEVS---QTP 218 (780)
Q Consensus 162 ~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs---~~~ 218 (780)
...+.+.+.+..+. ...+.++|+.|+||+++|..+++..--. .|.| ..|+.-. +..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 44566666666555 4578899999999999999998765321 1222 2222211 111
Q ss_pred CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC
Q 003996 219 DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD 292 (780)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~ 292 (780)
.++++ ..+.+.+. .++.-++|+|+++... ..+.+...+-....++.+|++|.+
T Consensus 89 ~vdqi---------------------R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 89 TVEQI---------------------RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CHHHH---------------------HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 22222 22222221 2345688899987652 233332223222345665555554
Q ss_pred -hHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHH
Q 003996 293 -INVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALR 370 (780)
Q Consensus 293 -~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~ 370 (780)
..+.+.. ..-..+.+.+++.+++.+.+...... .+..+++.++|.|+.+..+ +.+...+.++.+++
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~ 215 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLER 215 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHH
Confidence 4454433 33457899999999999988764111 1346788999999976544 33333444444444
Q ss_pred H
Q 003996 371 E 371 (780)
Q Consensus 371 ~ 371 (780)
.
T Consensus 216 ~ 216 (319)
T PRK06090 216 Q 216 (319)
T ss_pred H
Confidence 3
No 161
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00014 Score=68.84 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=28.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhcc-CCCCEEEE
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASEN-KLFDRVVF 211 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~-~~F~~~~w 211 (780)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999987654 35777776
No 162
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.25 E-value=0.02 Score=61.03 Aligned_cols=201 Identities=16% Similarity=0.229 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHH-HHHHHHhhccCCCCEEEEEEeCC---CCCHHHHHHHHHHHhCCC-
Q 003996 160 RVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLV-KEFVRQASENKLFDRVVFSEVSQ---TPDIKKIQGEIAEKLGLE- 234 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~~l~~~- 234 (780)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++.++.+ .+..+...+ ..+-..+++.++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888889999999999999999 77766533 255665543 234455666666666421
Q ss_pred ----------------------CCc--hhHHHHHH--------HHHH-----H--------------Hh--cCCeEEEEE
Q 003996 235 ----------------------LSD--EAEYRRAS--------RLYE-----R--------------LK--NENKILVIL 261 (780)
Q Consensus 235 ----------------------~~~--~~~~~~~~--------~l~~-----~--------------l~--~~k~~LlVl 261 (780)
..+ ++.+.... .|.+ + +. ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 000 11111111 1111 0 00 012568999
Q ss_pred eCCCCcc-----------CccccCCCCCCCCCCcEEEEEeCChHHHh----hc--CCCceEecCCCCHHHHHHHHHHHcC
Q 003996 262 DNIWKHL-----------DLDTVGIPFGNDHEGCRLLLTARDINVLL----SM--GSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 262 Ddv~~~~-----------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~----~~--~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
|++-... +|.. .+- ..+=.+||++|-+..... .+ .....+.|...+.+.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa---~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAA---SLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHH---HHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9985432 2332 111 223446888887654433 23 2345788999999999999999886
Q ss_pred CCCCC-------------------cchHHHHHHHHHHhCCChHHHHHHHHHHh-cCCH-HHHHHHHH
Q 003996 325 DDVEN-------------------CKFKSTAINVAQACGGLPIALTTVARALR-NKSL-HEWKNALR 370 (780)
Q Consensus 325 ~~~~~-------------------~~l~~~~~~I~~~c~GlPLai~~~~~~L~-~~~~-~~w~~~l~ 370 (780)
..... .....-....++.+||=-.-+..+++.++ +.++ +.-..+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33110 12334455677888998889999999888 4444 34444444
No 163
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0069 Score=64.30 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=83.7
Q ss_pred ccc-hHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC--------------------CCCEEEEEEe
Q 003996 157 FES-RVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK--------------------LFDRVVFSEV 214 (780)
Q Consensus 157 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 214 (780)
++| .+..++.+...+..+.. ....++|+.|+||||+|..+.+..-... |.|..+....
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 345 66677788887776654 5668999999999999999988754321 2232221111
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE
Q 003996 215 SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL 288 (780)
Q Consensus 215 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv 288 (780)
+....+++ +..+.+.+. .+++-++|+|+++... .-+.+...+-....++.+|+
T Consensus 87 ~~~i~id~---------------------ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 87 GQSIKKDQ---------------------IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred cccCCHHH---------------------HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 11111111 222222221 1345678999986542 22233333333344666666
Q ss_pred EeCCh-HHHhh-cCCCceEecCCCCHHHHHHHHHHH
Q 003996 289 TARDI-NVLLS-MGSKDNFLIGNLNEEEAWRLFKIM 322 (780)
Q Consensus 289 TTR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~ 322 (780)
+|.+. .+... ......+.+.+++.++..+.+.+.
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 66653 33332 233457899999999998888753
No 164
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.012 Score=63.10 Aligned_cols=157 Identities=17% Similarity=0.256 Sum_probs=93.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc-
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN- 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 253 (780)
+...+.+.|++|+|||+||..++.... |..+--++..... .-++......+...+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi------------------G~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI------------------GLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc------------------CccHHHHHHHHHHHHHHh
Confidence 456788999999999999999987654 7654433221111 11222223333333322
Q ss_pred --CCeEEEEEeCCCCccCccccCCCCCC-------------CCCCcE--EEEEeCChHHHhhcCC----CceEecCCCCH
Q 003996 254 --ENKILVILDNIWKHLDLDTVGIPFGN-------------DHEGCR--LLLTARDINVLLSMGS----KDNFLIGNLNE 312 (780)
Q Consensus 254 --~k~~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gs~--IlvTTR~~~v~~~~~~----~~~~~l~~L~~ 312 (780)
..--.||+||+....+|-.++..|.+ ...|-| |+-||....+...|+- ...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 24568999999888888777654322 123444 5556666777776553 34788888887
Q ss_pred -HHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 313 -EEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 313 -~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
++..+.++..- ...+.+.+.++.+...+| +-..|+.+-.++
T Consensus 675 ~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 77777776642 122344555666666666 223344444443
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.21 E-value=0.0012 Score=67.76 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=59.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
..+.++|..|+|||.||..+++....+ ...+++++ ..+++..+......... .....+.+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~~-- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLVNA-- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhcCC--
Confidence 458899999999999999999998654 34466665 34455555544332111 1122344555542
Q ss_pred EEEEEeCCCC--ccCccc--cCCCCCC-CCCCcEEEEEeCC
Q 003996 257 ILVILDNIWK--HLDLDT--VGIPFGN-DHEGCRLLLTARD 292 (780)
Q Consensus 257 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~IlvTTR~ 292 (780)
=||||||+.. ..+|.. +...+.. -..|..+||||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3899999943 334432 1111100 1245568888874
No 166
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.21 E-value=0.0025 Score=67.08 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCE-EEEEEeCCC-CCHHHHHHHHHHHhCCCCCchhH
Q 003996 164 LKSIQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDR-VVFSEVSQT-PDIKKIQGEIAEKLGLELSDEAE 240 (780)
Q Consensus 164 ~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~ 240 (780)
..++++.+.. ...+-+.|+|++|+|||||++.+++....+ +-+. ++|+.+++. .++.++.+.+...+.....+.+.
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3446666652 233567899999999999999999877654 2344 477777654 46788888888877654422211
Q ss_pred ------HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 003996 241 ------YRRASRLYERLK-NENKILVILDNIW 265 (780)
Q Consensus 241 ------~~~~~~l~~~l~-~~k~~LlVlDdv~ 265 (780)
........+++. .+++.+||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 112223334443 4789999999984
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.01 Score=61.99 Aligned_cols=172 Identities=14% Similarity=0.111 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC-----------------CCCEEEEEEeCCC-CCHH
Q 003996 161 VSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK-----------------LFDRVVFSEVSQT-PDIK 221 (780)
Q Consensus 161 ~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~-----------------~F~~~~wv~vs~~-~~~~ 221 (780)
+...+.+...+..+.. ..+.++|+.|+||+++|..+++..-... |.| ..|+..... .+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~- 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD- 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc-
Confidence 3456677777766655 4688999999999999999887653321 112 223321100 000
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC-hH
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD-IN 294 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~-~~ 294 (780)
.....-..+.+..+.+.+. .+++-++|+|+++... .-+.+...+-....++.+|++|.+ ..
T Consensus 88 ------------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 88 ------------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPAR 155 (319)
T ss_pred ------------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhh
Confidence 0000000112222333222 2356799999997652 111221122122345666666654 44
Q ss_pred HHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 295 VLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 295 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
+...+ ..-..+.+.+++.+++.+.+.+. + .. ...+..++..++|.|+.+..+
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 44332 23447889999999999888763 1 11 223567899999999866543
No 168
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.015 Score=61.01 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC--------------------CCCEEEEEEe--CCCC
Q 003996 162 STLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK--------------------LFDRVVFSEV--SQTP 218 (780)
Q Consensus 162 ~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v--s~~~ 218 (780)
...+.+.+.+..+.. ..+.++|+.|+||+++|..+++..--.. |.| ..++.- +...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~I 87 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD-FHILEPIDNKDI 87 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEccccCCCC
Confidence 345667777765553 6777999999999999999988754321 111 111110 0011
Q ss_pred CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC
Q 003996 219 DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD 292 (780)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~ 292 (780)
. .+.+..+.+.+. .+++-++|+|+++... ..+.+...+-....++.+|++|.+
T Consensus 88 ~---------------------id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 88 G---------------------VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred C---------------------HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 1 112222222222 2456688899997653 222332223222345566666655
Q ss_pred -hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHH
Q 003996 293 -INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIAL 350 (780)
Q Consensus 293 -~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 350 (780)
..+... ...-..+.+.+++.++..+.+.+..... ...+...+..++|.|+.+
T Consensus 147 ~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 147 SAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 344433 2234588999999999999988764211 113556778899999643
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.13 E-value=0.049 Score=65.35 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=59.5
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD-------A--NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..... -...+.++.+..... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h---
Confidence 3567988888888877751 1 23578899999999999999999866422 123344444432111 1
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
.+.+-+|.+...... .....+.+.+.....-+|+|||+...
T Consensus 642 ~~~~LiG~~pgy~g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVGY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCccccc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 111223322111110 01122334443333469999999744
No 170
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.015 Score=64.80 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
...-+|.++..++|++++. +.+.+++..+|++|||||.+|+.++.....+ | +-++++.-.+..+|-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccc
Confidence 3456788999999999886 3456899999999999999999999988754 4 335677766666543211
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKN--ENKILVILDNIWKH 267 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 267 (780)
-..+| ..-.++.+.|+. ..+=|+.+|.|+..
T Consensus 485 RTYVG---------AMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 485 RTYVG---------AMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eeeec---------cCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 11111 011234444432 24568888888543
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00012 Score=72.31 Aligned_cols=43 Identities=7% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~ 568 (780)
.++.++.+.+.+|..+. ..-...++.+|+.|++|+|+.|.+..
T Consensus 69 ~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSS 111 (418)
T ss_pred Hhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCC
Confidence 46677777777665431 12223456788888888888887654
No 172
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.0017 Score=64.44 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=30.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
-.++|+|..|+|||||+..+....... |..+++++-..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~~~ 51 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITPEY 51 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEecCC
Confidence 467899999999999999999876644 88887775533
No 173
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.10 E-value=0.0039 Score=74.38 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=60.8
Q ss_pred ccccchHHHHHHHHHHhh-------c--CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALT-------D--ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.++...... ....+-++++......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 467899999999888874 1 234578999999999999999998876432 1222333333221111
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
.+.+-+|.+..-... .....+.+.++....-+|+||++...
T Consensus 640 ~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 111112222111110 01123445555556679999999654
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.08 E-value=0.0051 Score=68.24 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=80.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
.+-|.++|++|+|||.+|+.+++..... | +-+..+. +.. ...+.+ ......+.+......
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l~~--------~~vGes-e~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------LFG--------GIVGES-ESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------hcc--------cccChH-HHHHHHHHHHHHhcC
Confidence 4678899999999999999999987532 2 1122111 110 111111 123334444444457
Q ss_pred eEEEEEeCCCCccC----c----------cccCCCCCCCCCCcEEEEEeCChHHHh-h----cCCCceEecCCCCHHHHH
Q 003996 256 KILVILDNIWKHLD----L----------DTVGIPFGNDHEGCRLLLTARDINVLL-S----MGSKDNFLIGNLNEEEAW 316 (780)
Q Consensus 256 ~~LlVlDdv~~~~~----~----------~~l~~~l~~~~~gs~IlvTTR~~~v~~-~----~~~~~~~~l~~L~~~e~~ 316 (780)
+++|++|+++.... . ..+...+.....+.-||.||....... . -..+..+.++.-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 89999999964310 0 001011111222334556666543211 1 123457788888999999
Q ss_pred HHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 317 RLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 317 ~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
++|..+.........-......+++.+.|.-
T Consensus 399 ~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 399 KIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 9998877532211000112345666665543
No 175
>PHA00729 NTP-binding motif containing protein
Probab=97.06 E-value=0.0034 Score=61.55 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 166 SIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 166 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555556667899999999999999999998753
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00032 Score=81.00 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=53.9
Q ss_pred hccceEEEeecCcc-cccC---CCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChh
Q 003996 504 LKKCYAISLLNSSI-HEVS---EEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPK 579 (780)
Q Consensus 504 ~~~~r~lsl~~~~~-~~~~---~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~ 579 (780)
..+++|+.+.+... ..-+ -...+|.|++|.+.+-... ..-....+.++++|+.||+|++++++|- +|++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCcH--HHhcccc
Confidence 35677777766432 1111 1135899999999875432 1112345789999999999999999983 7999999
Q ss_pred HHHh
Q 003996 580 VTRF 583 (780)
Q Consensus 580 L~~L 583 (780)
||.|
T Consensus 197 Lq~L 200 (699)
T KOG3665|consen 197 LQVL 200 (699)
T ss_pred HHHH
Confidence 9999
No 177
>PLN03150 hypothetical protein; Provisional
Probab=97.02 E-value=0.0009 Score=77.50 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=79.4
Q ss_pred cccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCccccc
Q 003996 627 NLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQV 706 (780)
Q Consensus 627 ~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 706 (780)
.+..|+|.++++. +.+|..++.|++|+.|+|++|.-...+| +.++.+++|+.|+|+++.-...++.
T Consensus 419 ~v~~L~L~~n~L~-----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~------- 484 (623)
T PLN03150 419 FIDGLGLDNQGLR-----GFIPNDISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNGSIPE------- 484 (623)
T ss_pred EEEEEECCCCCcc-----ccCCHHHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECCCCCCCCCCch-------
Confidence 4677888887775 3567678889999999999986333565 5788899999999987653334443
Q ss_pred ccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 707 TAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 707 ~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
.++.+++|+.|+|+++.--..+|.... ..+.++..+.+.+++.+...|
T Consensus 485 -~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 485 -SLGQLTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred -HHhcCCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 567889999999988764445543221 123456778888777766544
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0038 Score=66.66 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=80.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
...+.|+|+.|.|||.|++.+.+.......=..++++ +. +....+.+..+.. .......+.. +
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~--~s----e~f~~~~v~a~~~--------~~~~~Fk~~y-~-- 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL--TS----EDFTNDFVKALRD--------NEMEKFKEKY-S-- 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec--cH----HHHHHHHHHHHHh--------hhHHHHHHhh-c--
Confidence 6789999999999999999999988765211234443 22 2333333333211 1233444444 2
Q ss_pred eEEEEEeCCCCcc---Cccc-c---CCCCCCCCCCcEEEEEeCCh---------HHHhhcCCCceEecCCCCHHHHHHHH
Q 003996 256 KILVILDNIWKHL---DLDT-V---GIPFGNDHEGCRLLLTARDI---------NVLLSMGSKDNFLIGNLNEEEAWRLF 319 (780)
Q Consensus 256 ~~LlVlDdv~~~~---~~~~-l---~~~l~~~~~gs~IlvTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 319 (780)
-=++++||++... .|+. + ...+.. .|-.||+|++.. .....+...-.+.+.+.+.+....++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 2488999997542 2221 1 122222 233799998642 23334555678999999999999999
Q ss_pred HHHcC
Q 003996 320 KIMNG 324 (780)
Q Consensus 320 ~~~~~ 324 (780)
.+.+.
T Consensus 254 ~kka~ 258 (408)
T COG0593 254 RKKAE 258 (408)
T ss_pred HHHHH
Confidence 99765
No 179
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.01 E-value=0.0029 Score=67.45 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=37.9
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCC-CcCc
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRI-EFGQ 568 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~-~~~~ 568 (780)
...++|.+..+.+..+|. -.++|++|.+.++... ..+|..+ ..+|+.|++++| .+..
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nL--tsLP~~L---P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LPNELTEITIENCNNL--TTLPGSI---PEGLEKLTVCHCPEISG 109 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCc--ccCCchh---hhhhhheEccCcccccc
Confidence 467788888887777763 2346999998876654 4555433 246788888776 4433
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.99 E-value=0.0014 Score=62.62 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=67.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 232 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (780)
....++|-++.++.+.-.-.+++.+-+.|.||+|+||||-+..+++..-....=+.+.=.+.|....+.-+-..|-.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~--- 101 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM--- 101 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHH---
Confidence 44578899998888887777888999999999999999999999988765433345555566655544433222211
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 233 LELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
.++-.-.+..++.-++|||..++.
T Consensus 102 -----------FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 -----------FAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -----------HHHhhccCCCCceeEEEeeccchh
Confidence 000011112246678899998766
No 181
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.98 E-value=0.0038 Score=58.77 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHhhcCCeE-EEEEEeCCCChHHHHHHHHHHHhhccCC------------------CCEEEEEEeCCC--
Q 003996 159 SRVSTLKSIQNALTDANVS-IIGVYGMGGIGKTTLVKEFVRQASENKL------------------FDRVVFSEVSQT-- 217 (780)
Q Consensus 159 gR~~~~~~l~~~L~~~~~~-vi~I~G~~GvGKTtLa~~v~~~~~~~~~------------------F~~~~wv~vs~~-- 217 (780)
|.++..+.|.+.+..+..+ .+.++|+.|+||+|+|..+++..-.... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777888888776654 6799999999999999999886533211 222444443332
Q ss_pred -CCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEEeCChH
Q 003996 218 -PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLTARDIN 294 (780)
Q Consensus 218 -~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvTTR~~~ 294 (780)
..++++. ++...+..... .++.-++|+||++.. .....+...+-....++.+|++|++.+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 3344333 55544433221 125678999999765 233333333323345788888887654
Q ss_pred -HHh-hcCCCceEecCCCC
Q 003996 295 -VLL-SMGSKDNFLIGNLN 311 (780)
Q Consensus 295 -v~~-~~~~~~~~~l~~L~ 311 (780)
+.. ....-..+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 333 22333456666553
No 182
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.98 E-value=0.0041 Score=60.46 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=56.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC----chhHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELS----DEAEYRRASRLYER 250 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~~ 250 (780)
++++.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+.. ..+..+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999999888765 445777776543 3456777888999987632 12233334444444
Q ss_pred HhcCCeEEEEEeCC
Q 003996 251 LKNENKILVILDNI 264 (780)
Q Consensus 251 l~~~k~~LlVlDdv 264 (780)
...++.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44323346777755
No 183
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.96 E-value=0.0053 Score=60.78 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=52.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh-C---C-----CC-CchhHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL-G---L-----EL-SDEAEYRRAS 245 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~---~-----~~-~~~~~~~~~~ 245 (780)
..++.|+|++|+|||+++.++....... ...++|++... ++...+.+ +++.. . . .. +.........
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5799999999999999999998776543 56899999876 55554433 33321 0 0 00 0011122344
Q ss_pred HHHHHHhcCCeEEEEEeCC
Q 003996 246 RLYERLKNENKILVILDNI 264 (780)
Q Consensus 246 ~l~~~l~~~k~~LlVlDdv 264 (780)
.+.+.+...+.-+||+|.+
T Consensus 88 ~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHhhcCccEEEEeCc
Confidence 4444444445567888876
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0002 Score=70.86 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=81.5
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCc-cCccccchhhHhhccCCcEEEEecCchhHHhhc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCD-KLKYIFSASTIQSLEQLQHLEIRLCKSLQEIIS 699 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~-~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~ 699 (780)
.+..+|.|+.|+|++|.+...... +| -.+.+|+.|.|-|.+ .++.. -.++..+|.++.|++++. ++..+..
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~--lp---~p~~nl~~lVLNgT~L~w~~~--~s~l~~lP~vtelHmS~N-~~rq~n~ 163 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKS--LP---LPLKNLRVLVLNGTGLSWTQS--TSSLDDLPKVTELHMSDN-SLRQLNL 163 (418)
T ss_pred HHhcCccceEeeccCCcCCCcccc--Cc---ccccceEEEEEcCCCCChhhh--hhhhhcchhhhhhhhccc-hhhhhcc
Confidence 456788999999999877643332 22 235788888887753 11222 145677888889988853 3444433
Q ss_pred cCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcCCCC-CCcCCCCCCc
Q 003996 700 EDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQNDE-NDQFGVPAQQ 769 (780)
Q Consensus 700 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~~~~-~~~~~~~~~~ 769 (780)
...+ .-..-|.+++|++..|+...+..--...--||++..+.++.|| |+....++ .|++...+|-
T Consensus 164 Dd~c----~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 164 DDNC----IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred cccc----ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhh
Confidence 2222 1234567788888777644333111112347888888888888 77666443 3555544443
No 185
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.11 Score=55.56 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=83.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
+=..++||+|.|||+++.++++... |+.. =...+...+-.+ ++. |... ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d-Lr~--------------------LL~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD-LRH--------------------LLLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH-HHH--------------------HHHh--CCCC
Confidence 5677999999999999999999876 5422 122222111111 222 2221 1356
Q ss_pred EEEEEeCCCCccCc-----------cc---------c---CCCCCCCCCCcE-EEEEeCChHHHh-----hcCCCceEec
Q 003996 257 ILVILDNIWKHLDL-----------DT---------V---GIPFGNDHEGCR-LLLTARDINVLL-----SMGSKDNFLI 307 (780)
Q Consensus 257 ~LlVlDdv~~~~~~-----------~~---------l---~~~l~~~~~gs~-IlvTTR~~~v~~-----~~~~~~~~~l 307 (780)
-+||+.|++...+. +. + ...+...+.+-| ||.||...+-.. .-..+..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 88888888654211 10 1 111222222335 555666543322 1122447788
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 308 GNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 308 ~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
.--+.+....||.+..+...++ .+..+|.+.-.|.-+.=..++..|
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999998854433 345566665555544444444444
No 186
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.94 E-value=0.0058 Score=61.73 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=56.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------------h
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------------E 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 238 (780)
..++.|+|++|+|||+|+.+++........ ...++|++....++...+ .++++..+..... .
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 478999999999999999999865332211 257999998887765443 4444544432110 1
Q ss_pred hHHHHHHHHHHHHhcC-CeEEEEEeCCC
Q 003996 239 AEYRRASRLYERLKNE-NKILVILDNIW 265 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~-k~~LlVlDdv~ 265 (780)
........+.+.+.+. +.-+||+|-+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1122334455555555 67788888874
No 187
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.94 E-value=0.00095 Score=51.27 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=43.8
Q ss_pred cceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCc
Q 003996 506 KCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEF 566 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~ 566 (780)
+++.+.+..|.+..++.. ..+++|++|.+.++.. ..++++.|.++++|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l---~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL---TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE---SEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc---CccCHHHHcCCCCCCEEeCcCCcC
Confidence 456778888877777643 3688888888887765 467777788888888888888764
No 188
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.94 E-value=0.00077 Score=74.08 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=31.7
Q ss_pred cceEEEeecCcccccCCCCCCC--CccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 506 KCYAISLLNSSIHEVSEEFECP--QLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~--~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
....+.+..+.+..++...... +|+.|.+.++... .+|.. +..++.|+.|++++|.+..++.
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~---~l~~~-~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---SLPSP-LRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh---hhhhh-hhccccccccccCCchhhhhhh
Confidence 3555555555555555444332 5666665555432 33212 3555666666666665555544
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.93 E-value=0.013 Score=60.15 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHH
Q 003996 163 TLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQ 224 (780)
Q Consensus 163 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 224 (780)
.++++..++..+ ..+.+.|++|+|||++|+.+++... ...+.++.....+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 345555555433 3566899999999999999997442 124455555555555444
No 190
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.92 E-value=0.025 Score=57.65 Aligned_cols=168 Identities=18% Similarity=0.177 Sum_probs=101.7
Q ss_pred ccccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC-HHHHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD-IKKIQGEIAE 229 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~ 229 (780)
..++|-.++...+-.++. .+...-+.|+|+.|.|||+|......+.+. .-+..+-|...+..- -+-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHHHH
Confidence 467788888888887776 345567889999999999999888877221 123344455544322 2335666666
Q ss_pred HhCCCCC-----chhHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccC-------ccccCCCCCCCCCCcEEEEEeCC
Q 003996 230 KLGLELS-----DEAEYRRASRLYERLKN-----ENKILVILDNIWKHLD-------LDTVGIPFGNDHEGCRLLLTARD 292 (780)
Q Consensus 230 ~l~~~~~-----~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~IlvTTR~ 292 (780)
|+..... ..+-.+....+.+.|.. +.++++|+|.++-... ..-+-..-....+=|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 6643322 12333456677777764 3458888888753311 11111111123345668889996
Q ss_pred hHHH-------hhcCCCceEecCCCCHHHHHHHHHHHcC
Q 003996 293 INVL-------LSMGSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 293 ~~v~-------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
.... ..+....++-++.++-++...++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 4322 2333444666788889999999988764
No 191
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.90 E-value=0.0065 Score=71.87 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=60.2
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD-------A--NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++... ...+.++.+......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 3467888888888777651 1 245788999999999999999998763 234555555432211
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
.+...+|.+..... .+....+.+.+.....-+++||+++..
T Consensus 525 ~~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11122222211100 011223444454444569999999755
No 192
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.90 E-value=0.016 Score=53.00 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=78.2
Q ss_pred chHHHH-HHHHHHHhhhHhHHHhhhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Q 003996 2 LEIIVT-LVLELVKCLAPPAERQLVYLLERNYSANLENLKAEMEKLMVERTSIQRRVSEAKEKGEDIEEKVEKWLVSANG 80 (780)
Q Consensus 2 ae~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~l~~ 80 (780)
||++++ ++|.+++.++..+.+..... ...+.-+++|...+++|...+++.+......+..-+.-++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~---------~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKS---------LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 456654 33445555555555443333 35666777888888888888888887665555555888999999
Q ss_pred HHHHHHHHHHHHhhhccccccCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 003996 81 IIDRAAKFVEHEESTNKRCLKGLCPNLKTRYQLSKKAETEMKALLELG 128 (780)
Q Consensus 81 ~~~~~ed~ld~~~~~~~~~~~~~~~~~~~r~~i~~~i~~~~~~l~~i~ 128 (780)
...+++++++.+.+.+ .+++...++.+++|+++.+.+....
T Consensus 74 ~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999998766533 2456677788999999888877663
No 193
>PRK08181 transposase; Validated
Probab=96.89 E-value=0.0013 Score=67.16 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 003996 168 QNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRL 247 (780)
Q Consensus 168 ~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 247 (780)
.+|+. ...-+.++|++|+|||.||..+.+....+ ...++|+++ .+++..+..... +. .....
T Consensus 100 ~~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~~----~~~~~ 161 (269)
T PRK08181 100 DSWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----EL----QLESA 161 (269)
T ss_pred HHHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----CC----cHHHH
Confidence 34554 23458999999999999999999876543 334566543 445555543321 11 12233
Q ss_pred HHHHhcCCeEEEEEeCCCCc
Q 003996 248 YERLKNENKILVILDNIWKH 267 (780)
Q Consensus 248 ~~~l~~~k~~LlVlDdv~~~ 267 (780)
.+.+. +.=|||+||+...
T Consensus 162 l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh--cCCEEEEeccccc
Confidence 44443 3469999999643
No 194
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.86 E-value=0.012 Score=70.63 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=61.6
Q ss_pred ccccchHHHHHHHHHHhhc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+...+.. ....++.++|+.|+|||++|+.+....... -...+.++.+.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH--
Confidence 4578999999999888762 124678899999999999999999876432 123344555543221111
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
..-+|.+..-.. ......+.+.+......+|+||++...
T Consensus 641 --~~l~g~~~g~~g-~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGYVG-YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCccC-cccccHHHHHHHcCCCcEEEEeccccC
Confidence 111222211000 001123444444434459999999755
No 195
>PLN03150 hypothetical protein; Provisional
Probab=96.85 E-value=0.0022 Score=74.31 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=21.9
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCc
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCD 666 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~ 666 (780)
++.+++|+.|+|++|++. +.+|..++.|++|+.|+|++|.
T Consensus 462 ~~~l~~L~~LdLs~N~ls-----g~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFN-----GSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred HhCCCCCCEEECCCCCCC-----CCCchHHhcCCCCCEEECcCCc
Confidence 344555556666655554 2344445556666666666554
No 196
>PRK07261 topology modulation protein; Provisional
Probab=96.82 E-value=0.0032 Score=59.93 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=26.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhcc-CCCCEEEE
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASEN-KLFDRVVF 211 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~-~~F~~~~w 211 (780)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999998775432 13455666
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.81 E-value=0.054 Score=60.61 Aligned_cols=199 Identities=21% Similarity=0.201 Sum_probs=118.1
Q ss_pred ccccchHHHHHHHHHHhh----c-CCeEEEEEEeCCCChHHHHHHHHHHHhhc---c---CCCCEEEEEEeCCCCCHHHH
Q 003996 155 EAFESRVSTLKSIQNALT----D-ANVSIIGVYGMGGIGKTTLVKEFVRQASE---N---KLFDRVVFSEVSQTPDIKKI 223 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~---~~F~~~~wv~vs~~~~~~~i 223 (780)
..+-+|+.+..+|...+. + ...+.+-|.|.+|+|||..+..|.+.... + ..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 446689999999888775 3 33458899999999999999999986542 1 2243 344555556678999
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCccC--ccccCCCCC-CCCCCcEEEEEeC-C-hH
Q 003996 224 QGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHLD--LDTVGIPFG-NDHEGCRLLLTAR-D-IN 294 (780)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~IlvTTR-~-~~ 294 (780)
...|..++....... ...++.+..++. ..+..+|++|+++..-. -+-+...|. ...++||++|.+= + .+
T Consensus 475 Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 475 YEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 999999987653322 122334444443 24678999998754311 000111111 2345777555432 1 11
Q ss_pred ---------HHhhcCCCceEecCCCCHHHHHHHHHHHcCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 295 ---------VLLSMGSKDNFLIGNLNEEEAWRLFKIMNGDD--VENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 295 ---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
++..++ ...+...|.+.++-.++...+..+. ......+-++++|+.-.|..-.|+...-++.
T Consensus 553 lPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred CHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111111 2367778888888888887776532 2333344455566555555555555544443
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0036 Score=71.77 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=92.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCC----CEEEE-EEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLF----DRVVF-SEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~i~~~i 227 (780)
..++++||++|+.++++.|......--.++|.+|||||++|.-++.+....+-. +..++ ..+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~------------- 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL------------- 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH-------------
Confidence 356789999999999999985433334489999999999999988876543211 11111 111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------cc--ccCCCCCCCCCCcEEEEEeCChHHH-
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--------LD--TVGIPFGNDHEGCRLLLTARDINVL- 296 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~--~l~~~l~~~~~gs~IlvTTR~~~v~- 296 (780)
..-+....-...-+++...+.+.+...++.+|++|.++..-. .+ .+..|-...+.--.|-.||-++.--
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 111111111223345566666666665689999999865411 11 1222222222222255555543221
Q ss_pred -----hhcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 297 -----LSMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 297 -----~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
......+.+.++.-+.+++..+++...
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 112234578899999999999987654
No 199
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.80 E-value=0.081 Score=56.35 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhc---CCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 161 VSTLKSIQNALTD---ANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 161 ~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
+.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445666666663 467899999999999999999999988765
No 200
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.044 Score=58.04 Aligned_cols=162 Identities=11% Similarity=0.084 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhcc--------------------CCCCEEEEEEeCC---C
Q 003996 162 STLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASEN--------------------KLFDRVVFSEVSQ---T 217 (780)
Q Consensus 162 ~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~---~ 217 (780)
..-+++.+.+.++. ...+.+.|+.|+||+++|..++...--. .|.|. .++.-.. .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~~~ 87 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGKSS 87 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccccc
Confidence 44567777776554 4677899999999999999988865321 12222 2221110 0
Q ss_pred CCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeC
Q 003996 218 PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTAR 291 (780)
Q Consensus 218 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR 291 (780)
..+ +.+..+.+.+. .+++-++|+|+++... .-+.+...+-....++.+|++|.
T Consensus 88 I~i---------------------dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 88 LGV---------------------DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCH---------------------HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 111 11222222222 2466789999987552 22222222222234556555555
Q ss_pred C-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHH
Q 003996 292 D-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALT 351 (780)
Q Consensus 292 ~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 351 (780)
+ ..+... ...-..+.+.+++.+++.+.+.+..+ .+ .+.+..++..++|.|....
T Consensus 147 ~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 147 EPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChhhChHHHHhccccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 4 445543 23344788999999999988866432 11 2346688999999996443
No 201
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.011 Score=65.28 Aligned_cols=189 Identities=14% Similarity=0.152 Sum_probs=110.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
.....++|.+.....|...+..+.. ......|+-|+||||+|+-++...--.+. .....++....-+.|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 3456779999999999999886553 56678899999999999999987653311 111222222222333222
Q ss_pred hCCC-----CCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcE-EEEEeCChHHHh-
Q 003996 231 LGLE-----LSDEAEYRRASRLYERLK----NENKILVILDNIWKH--LDLDTVGIPFGNDHEGCR-LLLTARDINVLL- 297 (780)
Q Consensus 231 l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-IlvTTR~~~v~~- 297 (780)
-..+ .......+....+.+... .++.-+.|+|.|+.. ..|..+...+-..-...+ |+.||-...+..
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0010 001111223344444443 245568899999754 455555444432223445 444555454443
Q ss_pred hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH
Q 003996 298 SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI 348 (780)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 348 (780)
.......|.+..++.++-...+...+....-.. ..+....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCChh
Confidence 334456899999999999998888776333222 23456677777777543
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.73 E-value=0.0045 Score=64.61 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHhhc----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003996 159 SRVSTLKSIQNALTD----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 159 gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (780)
+|........+++.+ ...+-+.++|..|+|||.||..+++....+ -..+.+++++ +++.++....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555542 234678899999999999999999998743 2335565543 4555665544311
Q ss_pred CCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccc--cCCCCCC-C-CCCcEEEEEeC
Q 003996 235 LSDEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDT--VGIPFGN-D-HEGCRLLLTAR 291 (780)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~~l~~-~-~~gs~IlvTTR 291 (780)
+ .....+.+. +-=||||||+... ..|.. +...+.+ . ..+-.+|+||.
T Consensus 207 ----~----~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ----S----VKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ----c----HHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 223334443 3569999999643 44542 3222211 1 23445777776
No 203
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.71 E-value=0.014 Score=57.00 Aligned_cols=171 Identities=18% Similarity=0.250 Sum_probs=97.1
Q ss_pred cccccchHHHHHH---HHHHhhcC------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHH
Q 003996 154 YEAFESRVSTLKS---IQNALTDA------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQ 224 (780)
Q Consensus 154 ~~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 224 (780)
.+.++|.++...+ |++.|.+. ..+-|..+|++|.|||-+|+.+++..++- | +.+.. .+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HH--
Confidence 4567888766543 66666643 36889999999999999999999987753 2 12211 11
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------C----ccccCCCCC--CCCCCcEEEE
Q 003996 225 GEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL----------D----LDTVGIPFG--NDHEGCRLLL 288 (780)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~----~~~l~~~l~--~~~~gs~Ilv 288 (780)
-|-+.+| +....+.++.++-...-++++.+|.++... + .+.+..-+. ..+.|...|-
T Consensus 187 -liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 -LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1112222 223456677777766679999999985431 1 111111111 1234555555
Q ss_pred EeCChHHHh-hc--CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCC
Q 003996 289 TARDINVLL-SM--GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGL 346 (780)
Q Consensus 289 TTR~~~v~~-~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 346 (780)
.|.+.+... .. .....|+..--+++|-.+++...+..-.-+-+ .-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 565554433 11 12235666667788888888887752211111 1134566666664
No 204
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.70 E-value=0.0016 Score=58.16 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=22.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 205
>PRK12377 putative replication protein; Provisional
Probab=96.69 E-value=0.0094 Score=60.02 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=48.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
+...+.++|++|+|||+||..+++....+ ...++++++. +++..|-...... . ....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHhc--
Confidence 34678999999999999999999988754 3445666553 4444444433211 1 1123444443
Q ss_pred CeEEEEEeCCCC
Q 003996 255 NKILVILDNIWK 266 (780)
Q Consensus 255 k~~LlVlDdv~~ 266 (780)
+-=|||+||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 357999999943
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.071 Score=56.40 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=54.8
Q ss_pred CCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEecCCCCHHHHHHHHHHHcCCCCCC
Q 003996 254 ENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARD-INVLLS-MGSKDNFLIGNLNEEEAWRLFKIMNGDDVEN 329 (780)
Q Consensus 254 ~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 329 (780)
++.-++|+|+++... ..+.+...+-....++.+|++|.+ ..+... ...-..+.+.+++.++..+.+... +. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--A- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC--C-
Confidence 355688899997652 333333333333345555555544 555443 233458899999999999999775 21 1
Q ss_pred cchHHHHHHHHHHhCCChHHHHHH
Q 003996 330 CKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 330 ~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
+ ...++..++|.|..+..+
T Consensus 207 -~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755443
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.68 E-value=0.0026 Score=66.67 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHHhhc------CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 156 AFESRVSTLKSIQNALTD------ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.++|-++.++++++++.. ...+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999998862 24589999999999999999999998765
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.018 Score=68.45 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=92.3
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 154 YEAFESRVSTLKSIQNALTD-------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
...+.|.++.++.+.+++.- ...+.+.++|++|+|||+||+.+++..... | +.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH-----
Confidence 34577999988888776631 224568899999999999999999876422 2 222211
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCCCCC-CCCCcEE
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIPFGN-DHEGCRL 286 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~gs~I 286 (780)
++. .. .... .......+++......+.+|++|+++.... ...+...+.. ...+..+
T Consensus 247 -~i~----~~----~~g~-~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SK----YYGE-SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cc----cccH-HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 110 00 0111 122233444444444678999999854310 0111111111 1123334
Q ss_pred EE-EeCChH-HHhhc----CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH
Q 003996 287 LL-TARDIN-VLLSM----GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI 348 (780)
Q Consensus 287 lv-TTR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 348 (780)
+| ||.... +...+ .....+.+...+.++-.+++...........+ .....+++.+.|..-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 44 444332 11111 12346778888888888888865542221111 124577788887653
No 209
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.66 E-value=0.0056 Score=63.78 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=55.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------chhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 249 (780)
.+++-|+|++|+||||||.++....... -..++||+..+.++.. .+++++.+.+ ....++....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4799999999999999999988776543 4567898777655542 4566665321 1122233334444
Q ss_pred HHhcCCeEEEEEeCCCC
Q 003996 250 RLKNENKILVILDNIWK 266 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~ 266 (780)
.+.....-+||+|-+..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 44445677999999853
No 210
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00048 Score=68.31 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=107.9
Q ss_pred CccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh----hhcccCCCCCCCccCCHHHH
Q 003996 528 QLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF----CREVKTPSTSPNRQESQEEL 603 (780)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L----~~~l~~P~~~l~~~~~l~~L 603 (780)
.|+.|.+...... ..-.-.+++.+..|+-|.|+|+.+.+--.-.|.+=.+|+.| |..+..- .+.
T Consensus 186 Rlq~lDLS~s~it--~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--------~~~-- 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVIT--VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--------ALQ-- 253 (419)
T ss_pred hhHHhhcchhhee--HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------HHH--
Confidence 4666777654432 22344568899999999999988765000012222233322 2111110 000
Q ss_pred hcccccccccccccccccccccccccccccccccccccccccCCCCccccc-cCccEEeeccCccCccccchhhH-hhcc
Q 003996 604 TASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCF-QSLTRLIVWGCDKLKYIFSASTI-QSLE 681 (780)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l-~~L~~L~L~~c~~l~~l~~~~~l-~~L~ 681 (780)
-.+.+++.|+.|+|+|+.+..-- ..-.+.+. ++|+.|+|+||.+--....+..+ ...|
T Consensus 254 ----------------ll~~scs~L~~LNlsWc~l~~~~----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 254 ----------------LLLSSCSRLDELNLSWCFLFTEK----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ----------------HHHHhhhhHhhcCchHhhccchh----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 12456788999999996553210 00001122 68999999999632222122333 4689
Q ss_pred CCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 682 QLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 682 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
+|..|++++|..++.-.. ..+..|+.|++|.++.|-.+--= .-.+....|+|..|++.+|-
T Consensus 314 ~l~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~-~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPE-TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ceeeeccccccccCchHH-------HHHHhcchheeeehhhhcCCChH-HeeeeccCcceEEEEecccc
Confidence 999999999988865322 34568999999999998532100 01345678999999998864
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.62 E-value=0.02 Score=68.05 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=93.7
Q ss_pred ccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 155 EAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
..+.|.+...+.|.+.+. -...+-+.++|++|+|||++|+.+++..... | +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----H
Confidence 445677777666665543 1224558899999999999999999986532 2 22221 1
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------------ccccCCCCCC--CCCCcE
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--------------LDTVGIPFGN--DHEGCR 285 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~--~~~gs~ 285 (780)
+++.. ..+.+ ...+..+++......+.+|++|+++.... ...+...+.. ...+.-
T Consensus 522 ----~l~~~----~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSK----WVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhc----ccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111 11111 22344555555555789999999864310 0111111111 122444
Q ss_pred EEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 286 LLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 286 IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
||.||...+... .. .....+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 666665544332 11 234578888889999999998765532221111 1346667777644
No 212
>PRK09354 recA recombinase A; Provisional
Probab=96.58 E-value=0.0073 Score=63.49 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=56.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------chhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 249 (780)
.+++-|+|++|+||||||.+++...... -..++||.....++. ..++++|.+.+ ....++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999988776543 467889988877665 34566665421 1122333333444
Q ss_pred HHhcCCeEEEEEeCCCC
Q 003996 250 RLKNENKILVILDNIWK 266 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~ 266 (780)
.+...+.-+||+|-|-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 44455677999999853
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.018 Score=57.85 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhc--CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchh
Q 003996 162 STLKSIQNALTD--ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEA 239 (780)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 239 (780)
..+..+.++..+ .+...+.++|.+|+|||+||..+++....+ -..+++++ ..+++..+-..... ...
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~- 151 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SET- 151 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--ccc-
Confidence 344555554432 233578899999999999999999987654 34556664 34455554443321 111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 240 EYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 240 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
....+.+.+.+ .=+||+||+...
T Consensus 152 ---~~~~~l~~l~~--~dlLvIDDig~~ 174 (244)
T PRK07952 152 ---SEEQLLNDLSN--VDLLVIDEIGVQ 174 (244)
T ss_pred ---cHHHHHHHhcc--CCEEEEeCCCCC
Confidence 12234444543 458889999644
No 214
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.55 E-value=0.0067 Score=63.25 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=54.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------chhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 249 (780)
.+++-|+|++|+||||||.+++...... -..++||+....++.. .+++++.+.+ ..+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4789999999999999999988766543 4568899887766642 4555554321 1122233333433
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.+..+..-+||+|-|-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3445567799999874
No 215
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.52 E-value=0.0003 Score=77.65 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.6
Q ss_pred hcCCcceEEEecCCCcCc
Q 003996 551 KGMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 551 ~~l~~LrvLdL~~~~~~~ 568 (780)
-.++.||+|.|.++++..
T Consensus 106 fpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLST 123 (1096)
T ss_pred ccccceeeEEecCcchhh
Confidence 458999999999998865
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.013 Score=59.58 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=52.6
Q ss_pred HHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 003996 167 IQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASR 246 (780)
Q Consensus 167 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 246 (780)
+.+++. +..-+.++|.+|+|||.||..+.++.- +. --.+.++++ .+++.++...... .....+
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~~------~el~~~Lk~~~~~-------~~~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFITA------PDLLSKLKAAFDE-------GRLEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEEH------HHHHHHHHHHHhc-------CchHHH
Confidence 344443 567788999999999999999999988 32 234555543 4566666555432 112234
Q ss_pred HHHHHhcCCeEEEEEeCCCCc
Q 003996 247 LYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 247 l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+.+.+.. -=||||||+-..
T Consensus 161 l~~~l~~--~dlLIiDDlG~~ 179 (254)
T COG1484 161 LLRELKK--VDLLIIDDIGYE 179 (254)
T ss_pred HHHHhhc--CCEEEEecccCc
Confidence 4443433 459999998543
No 217
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.51 E-value=0.022 Score=57.16 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=38.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
..++.|+|++|+|||+||.+++....... .=..++|++....++...+ .++++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~ 76 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVR 76 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHH
Confidence 57999999999999999999987654321 0156889988777665444 344444
No 218
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.49 E-value=0.14 Score=56.18 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=53.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 249 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~~ 249 (780)
...+|.++|.+|+||||+|..++.....+. + .+.-|+.... ....+.++.++++++.+... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998877542 2 4444544332 23355567777777765322 122222333344
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.... . -+||+|..-
T Consensus 172 ~~~~-~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKK-A-DVIIVDTAG 185 (437)
T ss_pred Hhhc-C-CEEEEECCC
Confidence 4433 2 568888763
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.48 E-value=0.0056 Score=58.54 Aligned_cols=75 Identities=29% Similarity=0.352 Sum_probs=45.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
...-+.++|+.|+|||.||..+.+....+ -..+.|+++ .+++..+-. ...... ...+.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~~- 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLKR- 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHHT-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceeccccc----cccccc----hhhhcCcccc-
Confidence 34568999999999999999999877653 234566653 344444432 111111 2234455554
Q ss_pred CeEEEEEeCCCCc
Q 003996 255 NKILVILDNIWKH 267 (780)
Q Consensus 255 k~~LlVlDdv~~~ 267 (780)
-=||||||+-..
T Consensus 109 -~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 -VDLLILDDLGYE 120 (178)
T ss_dssp -SSCEEEETCTSS
T ss_pred -ccEeccccccee
Confidence 458889999644
No 220
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.04 Score=62.99 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=103.0
Q ss_pred cccccchHHH---HHHHHHHhhcC---------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRVST---LKSIQNALTDA---------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~~~---~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
..++.|-++. +.++++.|.++ -++=+.++|++|+|||-||+.++-...+- |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 3456666554 55556666532 24668899999999999999999887653 3455442
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------------ccccCCCCCCCC--C
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-----------------LDTVGIPFGNDH--E 282 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----------------~~~l~~~l~~~~--~ 282 (780)
+..+.+... ...++..++..-+...++++.+|+++.... ++.+..-..... .
T Consensus 379 ----EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 112111111 023455566666666889999998865421 112211111111 2
Q ss_pred CcEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHH
Q 003996 283 GCRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIAL 350 (780)
Q Consensus 283 gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 350 (780)
+--++-+|+..++.. .-.-+..+.++.-+...-.++|.-++.......+..++.+ |+....|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 222333455444433 1122456778888888888999988875444345556666 888888877553
No 221
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0071 Score=67.45 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=55.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH-hc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERL-KN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~ 253 (780)
..+++.++|++|.||||||+.++++.. ..++=|++|...+...+-..|...+.... .+ .+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHS--------------VLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhcc--------------ccccC
Confidence 458999999999999999999998765 24778899998888877777665543221 11 12
Q ss_pred CCeEEEEEeCCCCc
Q 003996 254 ENKILVILDNIWKH 267 (780)
Q Consensus 254 ~k~~LlVlDdv~~~ 267 (780)
.++.-||+|.++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 47888999998754
No 222
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.47 E-value=0.012 Score=60.95 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=51.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
+.+++.|+|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.+..............+.+.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRD 272 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccC
Confidence 35799999999999999999998877543111345666654322 23344445556666654322222223344444432
Q ss_pred CCeEEEEEeCC
Q 003996 254 ENKILVILDNI 264 (780)
Q Consensus 254 ~k~~LlVlDdv 264 (780)
.=+|++|..
T Consensus 273 --~d~vliDt~ 281 (282)
T TIGR03499 273 --KDLILIDTA 281 (282)
T ss_pred --CCEEEEeCC
Confidence 347777753
No 223
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.46 E-value=0.019 Score=60.12 Aligned_cols=89 Identities=26% Similarity=0.311 Sum_probs=58.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------------h
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN----KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------------E 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 238 (780)
..++-|+|++|+|||+|+.+++-..... ..=..++||+....++.+.+. +++++++.+.+. .
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4788899999999999999877543221 112478999999988888764 567777654321 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 003996 239 AEYRRASRLYERLKNENKILVILDNIW 265 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 265 (780)
...+....+...+...+.-|||+|.+.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 112233344444444455688888873
No 224
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.013 Score=62.38 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=80.4
Q ss_pred ccchHHHHHHHHHHhh-cCCeEE-EEEEeCCCChHHHHHHHHHHHhhccC-------------------CCCEEEEEEeC
Q 003996 157 FESRVSTLKSIQNALT-DANVSI-IGVYGMGGIGKTTLVKEFVRQASENK-------------------LFDRVVFSEVS 215 (780)
Q Consensus 157 ~~gR~~~~~~l~~~L~-~~~~~v-i~I~G~~GvGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 215 (780)
++|-+....++..+.. ..+.+. +.++|++|+||||+|..+.+...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566677777877777 333444 99999999999999999999876332 12345555555
Q ss_pred CCCC---HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccCCCCCCCCCCcEEEEEe
Q 003996 216 QTPD---IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--LDTVGIPFGNDHEGCRLLLTA 290 (780)
Q Consensus 216 ~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~IlvTT 290 (780)
.... ..+..+++.+....... .++.-++++|+++.... -..+...+......+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 5444 34444555544433211 13567899999875521 122222222233466777777
Q ss_pred CC-hHHHhhcC-CCceEecCCCCHH
Q 003996 291 RD-INVLLSMG-SKDNFLIGNLNEE 313 (780)
Q Consensus 291 R~-~~v~~~~~-~~~~~~l~~L~~~ 313 (780)
.. ..+..... ....+++.+.+..
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred CChhhccchhhhcceeeecCCchHH
Confidence 63 33333222 2235666663333
No 225
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.012 Score=62.76 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..++.++|+.|+||||++..+......+.....+..++... .....+-++..++.++.+................+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~- 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN- 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC-
Confidence 47899999999999999999998765331123566665433 2345566677777887765432222222333344443
Q ss_pred CeEEEEEeCCC
Q 003996 255 NKILVILDNIW 265 (780)
Q Consensus 255 k~~LlVlDdv~ 265 (780)
.-++++|..-
T Consensus 216 -~DlVLIDTaG 225 (374)
T PRK14722 216 -KHMVLIDTIG 225 (374)
T ss_pred -CCEEEEcCCC
Confidence 3567789874
No 226
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0076 Score=64.68 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=60.8
Q ss_pred cccccchH---HHHHHHHHHhhcC--------C-eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRV---STLKSIQNALTDA--------N-VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~---~~~~~l~~~L~~~--------~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
..++.|-+ .|+++|+++|.++ + ++=|.++|++|.|||-||+.++-...+- | |...+..|+..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm 376 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM 376 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh
Confidence 34455654 4677888888753 1 4678899999999999999999877654 2 33333333321
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+ --. -..++..++..-+..-+++|.+|.++..
T Consensus 377 --~----VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 377 --F----VGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred --h----hcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 000 1234455666666667999999998654
No 227
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.43 E-value=0.02 Score=60.42 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=57.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc----------hhH-
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE----NKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD----------EAE- 240 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~- 240 (780)
..++-|+|++|+|||+|+.+++-.... ...-..++||+....|+...+. ++++.++.+.+. .+.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCHH
Confidence 478889999999999999998644322 1112478999999999988764 567777664321 011
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEeCCC
Q 003996 241 --YRRASRLYERLKNENKILVILDNIW 265 (780)
Q Consensus 241 --~~~~~~l~~~l~~~k~~LlVlDdv~ 265 (780)
......+...+...+--|||+|.+-
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 1222333333434445688888773
No 228
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.42 E-value=0.02 Score=58.30 Aligned_cols=88 Identities=27% Similarity=0.386 Sum_probs=57.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------------h
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------------E 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 238 (780)
..+.=|+|++|+|||.|+.+++-...... .=..++||+....++...+. +|+++.+...+. .
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 35888999999999999998876654321 12469999999999887764 577776543211 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCC
Q 003996 239 AEYRRASRLYERLKNENKILVILDNI 264 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv 264 (780)
.....+..+...+.+.+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 11223334444444456678999987
No 229
>PRK06696 uridine kinase; Validated
Probab=96.42 E-value=0.0053 Score=61.38 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhh---cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 159 SRVSTLKSIQNALT---DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 159 gR~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46677788877775 356789999999999999999999998754
No 230
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.41 E-value=0.026 Score=59.71 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcC----CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC
Q 003996 162 STLKSIQNALTDA----NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELS 236 (780)
Q Consensus 162 ~~~~~l~~~L~~~----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~ 236 (780)
+....+..++.++ +.++|.++|+.||||||-...++.++.....=..+..|+..... ...+-++..++-++.+..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 3445555555544 47999999999999997655555554421113457777766533 455667777888888876
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEEeCC
Q 003996 237 DEAEYRRASRLYERLKNENKILVILDNI 264 (780)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv 264 (780)
..........-...+.+ . =+|.+|-+
T Consensus 265 vv~~~~el~~ai~~l~~-~-d~ILVDTa 290 (407)
T COG1419 265 VVYSPKELAEAIEALRD-C-DVILVDTA 290 (407)
T ss_pred EecCHHHHHHHHHHhhc-C-CEEEEeCC
Confidence 54433444444444544 2 34445554
No 231
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.39 E-value=0.021 Score=57.15 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=35.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKK 222 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 222 (780)
..++.|+|++|+|||++|.+++...... -..++|++.. .++...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPER 66 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHH
Confidence 5799999999999999999998876543 4678999887 555443
No 232
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.39 E-value=0.0029 Score=44.67 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred cccccccccccccccccccCCCCccccccCccEEeeccCccCccc
Q 003996 627 NLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYI 671 (780)
Q Consensus 627 ~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l 671 (780)
+|++|++++|++++++. .++.|++|+.|++++|. ++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~------~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP------ELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG------HGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCc------hHhCCCCCCEEEecCCC-CCCC
Confidence 55666666666654332 25556666666666664 4444
No 233
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.25 Score=54.65 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLEL 235 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 235 (780)
..|++++|+.|+||||++..++.....++....+..++... .....+-++..++.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 47999999999999999999998775432222455555433 1233444566667776654
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.37 E-value=0.0093 Score=71.49 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=60.5
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD-------A--NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..-.. -...+-++.+.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 4578989999988887751 1 23567789999999999999999876322 122344444443221111
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
..-+|.+..-.. ......+.+.+......+++||+++..
T Consensus 585 --~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 111222211000 001123445555534468999999755
No 235
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.37 E-value=0.0012 Score=71.13 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=92.5
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh--
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-- 583 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-- 583 (780)
....+.+..|.++.+|.....--|+.|.+.+++. ..+|.++ .....|..||.+.|++.+|+. -++.|.+|+.|
T Consensus 122 ~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl---~~lp~~i-g~~~tl~~ld~s~nei~slps-ql~~l~slr~l~v 196 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKL---TSLPEEI-GLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNV 196 (722)
T ss_pred HHHHhhhccchhhcCChhhhcCcceeEEEecCcc---ccCCccc-ccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHH
Confidence 3445555556666666555555577777776665 4566654 467777777777777777665 56777777766
Q ss_pred --hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 584 --CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 584 --~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
.+.+.+|. ++.. -.|..|++++|++..+ |-.+..|..|+.|.
T Consensus 197 rRn~l~~lp~-----------------------------El~~-LpLi~lDfScNkis~i------Pv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 197 RRNHLEDLPE-----------------------------ELCS-LPLIRLDFSCNKISYL------PVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhhhCCH-----------------------------HHhC-CceeeeecccCceeec------chhhhhhhhheeee
Confidence 11122232 3332 2467788888888644 43478889999999
Q ss_pred eccCccCccccc-hhhHhhccCCcEEEEecC
Q 003996 662 VWGCDKLKYIFS-ASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 662 L~~c~~l~~l~~-~~~l~~L~~L~~L~l~~c 691 (780)
|.+++ |++-|- +...|...--++|++..|
T Consensus 241 LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 241 LENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 98887 777541 223456777788888877
No 236
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.37 E-value=0.2 Score=54.39 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=37.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~ 234 (780)
...+|.++|+.|+||||++..++...+.+. + .++.|+.... ....+-++..+++.+.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 468999999999999999999988776432 2 4555554322 23333344455555543
No 237
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.057 Score=53.97 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHhh---------c---CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHH
Q 003996 156 AFESRVSTLKSIQNALT---------D---ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKI 223 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~---------~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 223 (780)
.+-|-+...+.|.++.. . ..-+-|.++|++|.||+.||+.|+...... |.+||...-+.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSSDLvS-- 204 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSSDLVS-- 204 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehHHHHH--
Confidence 34566666666666543 1 234788999999999999999999876532 34454421111
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 224 QGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+.+| ..+.++..+++.-+..|+-+|.+|.++..
T Consensus 205 -----KWmG------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 205 -----KWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred -----HHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 1112 12345666777777789999999998643
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.34 E-value=0.025 Score=53.11 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=31.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
++.|+|++|+||||++..+....... -..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999998877542 45678887765543
No 239
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.33 E-value=0.0064 Score=42.91 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccccc
Q 003996 527 PQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSL 572 (780)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L 572 (780)
++|++|.+.++.. ..+|+. +.+|++|++|++++|.+.+++.|
T Consensus 1 ~~L~~L~l~~N~i---~~l~~~-l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQI---TDLPPE-LSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS----SSHGGH-GTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCC---cccCch-HhCCCCCCEEEecCCCCCCCcCC
Confidence 4789999998876 367764 69999999999999999876643
No 240
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.073 Score=58.49 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=62.3
Q ss_pred cccccchHHHHHHHHHHhh---c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRVSTLKSIQNALT---D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
...+-|-+..+.++.+.+. . ...+=|.++|++|.|||.||+.++++..+- | +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 4456788888888777654 1 235678899999999999999999988764 3 333321
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+|...+. ++ .++.+..+++.-.+.-++++++|+++..
T Consensus 258 ----eivSGvS----GE-SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS----GE-SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC----cc-cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2222211 11 2234556666666668999999998644
No 241
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.31 E-value=0.0015 Score=75.50 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=74.1
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHh--hc
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEI--IS 699 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l--~~ 699 (780)
..++|||.+|++++++++.+ .| ++.|.||+.|.+++.. ...-+.+..+..|.+|+.|+||.-.....- +.
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~G------IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~ 240 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SG------ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIE 240 (699)
T ss_pred hhccCccceeecCCCCccCc-HH------HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHH
Confidence 35689999999999998876 33 7889999999998876 433334457778999999999853322211 11
Q ss_pred cCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCC
Q 003996 700 EDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKIT 753 (780)
Q Consensus 700 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~ 753 (780)
.....-..+|+|+.|+.++- .+..---.....+-|+|+.+.+-+|....
T Consensus 241 ----qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 241 ----QYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAALDCLALS 289 (699)
T ss_pred ----HHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence 00012235899999998752 11111000011234677777666555443
No 242
>PRK04132 replication factor C small subunit; Provisional
Probab=96.29 E-value=0.065 Score=63.06 Aligned_cols=156 Identities=10% Similarity=0.063 Sum_probs=92.0
Q ss_pred CCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeC
Q 003996 184 MGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDN 263 (780)
Q Consensus 184 ~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDd 263 (780)
|.++||||+|..++++.-....-..++-++.+...++..+. +++..+....+ +.+.+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 77999999999999986432111246777888765555433 33322210000 0112457999999
Q ss_pred CCCcc--CccccCCCCCCCCCCcEEEEEeCC-hHHHhhc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 003996 264 IWKHL--DLDTVGIPFGNDHEGCRLLLTARD-INVLLSM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINV 339 (780)
Q Consensus 264 v~~~~--~~~~l~~~l~~~~~gs~IlvTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I 339 (780)
++... ....+...+-.....+++|++|.+ ..+.... .....+++.+++.++....+.+.+....-. --.+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 98763 333333333222345666665554 3333322 234588999999999998888765422111 114577899
Q ss_pred HHHhCCChHHHHHHHH
Q 003996 340 AQACGGLPIALTTVAR 355 (780)
Q Consensus 340 ~~~c~GlPLai~~~~~ 355 (780)
++.++|.+..+..+..
T Consensus 718 a~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 718 LYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999998865544433
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.016 Score=55.56 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=29.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEE
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFS 212 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv 212 (780)
...+|.+.|+.|+||||+|+.+++..... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45689999999999999999999988653 5555555
No 244
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.24 E-value=0.032 Score=56.33 Aligned_cols=48 Identities=10% Similarity=0.252 Sum_probs=35.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
...++.|.|++|+|||++|.++......+ -..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 35799999999999999999987654322 46788888765 45555554
No 245
>PRK10867 signal recognition particle protein; Provisional
Probab=96.23 E-value=0.3 Score=53.38 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=36.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE 234 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~ 234 (780)
...+|.++|++|+||||.+..++.....+. -..++.|+..... ...+-++..+++.+.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 468999999999999999999888765431 1234444443221 2223344556666543
No 246
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.038 Score=58.63 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=50.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
+.++|+++|++|+||||++..++.....+ -..+..++..... ...+-++..++.++.+................+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 35799999999999999999998877543 1245555544322 23333445556666654322122222233333432
Q ss_pred -CCeEEEEEeCCC
Q 003996 254 -ENKILVILDNIW 265 (780)
Q Consensus 254 -~k~~LlVlDdv~ 265 (780)
.+.=+|++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 122467777763
No 247
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0083 Score=70.21 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=59.4
Q ss_pred cccchHHHHHHHHHHhhc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 156 AFESRVSTLKSIQNALTD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
.++|.++.++.|.+.+.. .....+.++|++|+|||++|+.++..... ..+.++.+...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 467888888888887761 12457899999999999999999887632 23344444322211 1
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 227 IAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+.+-+|.+..... ......+.+.+......+|+||++...
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222332211110 011123334444444579999999765
No 248
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.032 Score=62.23 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=81.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT--PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
.+.|.|.|+.|+|||+||+.+++... +.+.-.+.+++.+.- ...+.+++.+-..+ .+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~- 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW- 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh-
Confidence 46788999999999999999999887 444555666666542 23444444333221 11222
Q ss_pred CCeEEEEEeCCCCcc--------Cccc-----------cCCCCCCCCCCcE--EEEEeCChHHHh-----hcCCCceEec
Q 003996 254 ENKILVILDNIWKHL--------DLDT-----------VGIPFGNDHEGCR--LLLTARDINVLL-----SMGSKDNFLI 307 (780)
Q Consensus 254 ~k~~LlVlDdv~~~~--------~~~~-----------l~~~l~~~~~gs~--IlvTTR~~~v~~-----~~~~~~~~~l 307 (780)
..+-+|||||++... +|.. +..-+ ...+.+ +|.|.....-.. ..-...+..|
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 268999999986431 1211 10111 122333 333433322111 1112346678
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC
Q 003996 308 GNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG 345 (780)
Q Consensus 308 ~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 345 (780)
.++...+-.++++.......... ..+...-+..+|+|
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEG 607 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEG 607 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCC
Confidence 88888887777766544222111 12223337778877
No 249
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.02 Score=61.51 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=49.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..++.++|++|+||||++..++........+ .+..++... .......++..++.++.+...... ...+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~---~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD---IKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHH---HHHHHHHHHhC
Confidence 4689999999999999999998765322222 333333322 122344556666677765433221 23344444332
Q ss_pred CeEEEEEeCC
Q 003996 255 NKILVILDNI 264 (780)
Q Consensus 255 k~~LlVlDdv 264 (780)
+.=+||+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3346888843
No 250
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.18 E-value=0.044 Score=55.63 Aligned_cols=90 Identities=22% Similarity=0.383 Sum_probs=57.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
.-+-++|.|.+|+|||||++.+++....+ +-+.++++.+++.. .+.++.+++...-... .++...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999999988754 12456777777654 4556666665432111 111111
Q ss_pred HHHHHHHHHHHh-c-CCeEEEEEeCCC
Q 003996 241 YRRASRLYERLK-N-ENKILVILDNIW 265 (780)
Q Consensus 241 ~~~~~~l~~~l~-~-~k~~LlVlDdv~ 265 (780)
....-.+.+++. . ++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 112334555554 2 589999999984
No 251
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.063 Score=59.67 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=79.7
Q ss_pred cccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 154 YEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
...+-|-++...+|.+.+. -...+-|..+|++|.|||++|+.+++..... | +.++..
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH---
Confidence 3445456555555554433 1356788999999999999999999988765 4 333321
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCCCCCCCCCcEEE
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIPFGNDHEGCRLL 287 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~gs~Il 287 (780)
++... +-+++ +..+..+++.-+.--+.++.||.++.... +..+..-+........|+
T Consensus 503 -----EL~sk----~vGeS-Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -----ELFSK----YVGES-ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -----HHHHH----hcCch-HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 11110 11111 22334444444444578888988764311 111111111111121233
Q ss_pred -E-EeCChHHHh--hcC---CCceEecCCCCHHHHHHHHHHHcCC
Q 003996 288 -L-TARDINVLL--SMG---SKDNFLIGNLNEEEAWRLFKIMNGD 325 (780)
Q Consensus 288 -v-TTR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 325 (780)
| .|...+... .+. .+..+.++.-+.+.-.++|+.++..
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3 233222222 222 3456667777777778899988863
No 252
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.16 E-value=0.039 Score=55.28 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=35.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
..++.|.|++|+||||+|.++......+ -..+++++.. .+..++++.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e--~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQ--LTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCC--CCHHHHHHHH-HHhCC
Confidence 4689999999999999987776654322 1345666633 3456666665 34443
No 253
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.15 E-value=0.039 Score=58.43 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
..++-|+|++|+|||+++.+++........ =..++||+....++...+. ++++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 578899999999999999999876532211 1479999998888877654 55566554
No 254
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.13 E-value=0.034 Score=55.78 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
.+..+++|.|+.|+|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999887654
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.13 E-value=0.035 Score=55.33 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=33.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
..++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 5789999999999999999998876533 34678887655543
No 256
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.11 E-value=0.045 Score=57.82 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=42.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (780)
..++-|+|++|+||||++.+++....... .-..++||+....++...+ .++++.++..
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~gl~ 156 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEARGLD 156 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 57889999999999999999987654211 0137999999888887765 4556665543
No 257
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.015 Score=52.93 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=36.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS 236 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (780)
+|.|.|++|+||||+|+.++++..-. | | +.-.++++|++..|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCCHH
Confidence 68899999999999999999987643 1 1 233688999999988754
No 258
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.08 E-value=0.025 Score=52.94 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
....+.|+|++|.|||||.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 4468899999999999999999998764
No 259
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.17 Score=57.35 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHhh---------cC---CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRVSTLKSIQNALT---------DA---NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~---------~~---~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
-+++-|-++.+..|.+-+. .. +..=|.++|++|.|||-+|++|+.+..-. |++|...
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----
Confidence 3456678888888887664 22 24568899999999999999999887643 4555442
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+++.. .+| ..++...+++++-+..++++|.||.+++.
T Consensus 740 ELLNM---YVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNM---YVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHH---Hhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 111 12234566777777779999999999765
No 260
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.07 E-value=0.034 Score=58.40 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=41.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN---K-LFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (780)
..++.|+|.+|+|||||+..++...... . .-..++|++....++... +.++++.++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 5799999999999999999987643211 0 123679999888777775 45566666543
No 261
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.06 E-value=0.034 Score=58.84 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN----KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (780)
..++-|+|.+|+|||+|+..++-..... ..-..++||+....++.+.+ .+|++.++..
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 5788899999999999999887543321 11136999999999888776 5677777654
No 262
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.014 Score=55.76 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.|.|.|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998553
No 263
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.023 Score=62.56 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=50.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..+++|+|++|+||||++..+......+.....+..++.... ....+.++...+.++................+.+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~- 428 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD- 428 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc-
Confidence 578999999999999999999887654322344555554322 122333444445555543332222233344444433
Q ss_pred CeEEEEEeCCC
Q 003996 255 NKILVILDNIW 265 (780)
Q Consensus 255 k~~LlVlDdv~ 265 (780)
.=+|++|..-
T Consensus 429 -~DLVLIDTaG 438 (559)
T PRK12727 429 -YKLVLIDTAG 438 (559)
T ss_pred -CCEEEecCCC
Confidence 4578888763
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.0086 Score=54.36 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=24.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENK 204 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~ 204 (780)
--|.|.|++|+||||+++.+.+..+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4588999999999999999999887653
No 265
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.01 E-value=0.0054 Score=67.42 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=117.2
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCC-cceEEEecCCCcCcccccccCCChhHHHh----hhcccCCCCCCCccCC
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMK-KLRVVDLTRIEFGQLRSLTLGKLPKVTRF----CREVKTPSTSPNRQES 599 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~-~LrvLdL~~~~~~~L~~L~i~~L~~L~~L----~~~l~~P~~~l~~~~~ 599 (780)
..+++..|.+.++.. ..+++. ...+. +|+.|+++++.+..++. .++.|++|+.| +....+|
T Consensus 114 ~~~~l~~L~l~~n~i---~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N~l~~l~--------- 179 (394)
T COG4886 114 ELTNLTSLDLDNNNI---TDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLP--------- 179 (394)
T ss_pred cccceeEEecCCccc---ccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccCCchhhhhh---------
Confidence 456788888877766 356553 24453 89999999998887753 57777887777 1111111
Q ss_pred HHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhh
Q 003996 600 QEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQS 679 (780)
Q Consensus 600 l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~ 679 (780)
...+..++|+.|+++++.+..++.. +....+|..|.+++....+.+ ..+..
T Consensus 180 --------------------~~~~~~~~L~~L~ls~N~i~~l~~~------~~~~~~L~~l~~~~N~~~~~~---~~~~~ 230 (394)
T COG4886 180 --------------------KLLSNLSNLNNLDLSGNKISDLPPE------IELLSALEELDLSNNSIIELL---SSLSN 230 (394)
T ss_pred --------------------hhhhhhhhhhheeccCCccccCchh------hhhhhhhhhhhhcCCcceecc---hhhhh
Confidence 1223678888999999888765442 344567889998887533333 56677
Q ss_pred ccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 680 LEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 680 L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+.+|..|.+. ...+..++ ..++.+++|++|.+.++ .+..++. .+.+.+|+.|++.+......+|
T Consensus 231 ~~~l~~l~l~-~n~~~~~~--------~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELS-NNKLEDLP--------ESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccC-Cceeeecc--------chhccccccceeccccc-ccccccc---ccccCccCEEeccCccccccch
Confidence 7788877755 33343322 25567888999999886 4677743 4678899999998877654444
No 266
>PTZ00035 Rad51 protein; Provisional
Probab=96.00 E-value=0.051 Score=57.67 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=54.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------------h
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE----NKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------------E 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------------~ 238 (780)
..++.|+|++|+|||||+..++-.... ...-..++|++....++... +.++++.++..... .
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 578999999999999999988765431 00123577999888777766 45566666553211 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 003996 239 AEYRRASRLYERLKNENKILVILDNIW 265 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 265 (780)
...+....+...+...+.-|||+|-+.
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcH
Confidence 111222223333334455688888773
No 267
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.037 Score=58.46 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=55.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
+.+++.++|+.|+||||++..++.....+ -..+.+|+..... ...+-++..++.++.+..............+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998876543 2456777765433 33455667777777654322222223333444431
Q ss_pred -CCeEEEEEeCCC
Q 003996 254 -ENKILVILDNIW 265 (780)
Q Consensus 254 -~k~~LlVlDdv~ 265 (780)
+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 234577788764
No 268
>PRK06526 transposase; Provisional
Probab=95.93 E-value=0.016 Score=58.90 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
...+.|+|++|+|||+||..+........ + .+.|+ +..+++..+..... .. ........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----AG----RLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHhc--c
Confidence 35689999999999999999988765432 2 23442 33445555443211 00 1112222332 3
Q ss_pred eEEEEEeCCCCc
Q 003996 256 KILVILDNIWKH 267 (780)
Q Consensus 256 ~~LlVlDdv~~~ 267 (780)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 468999999643
No 269
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.93 E-value=0.00078 Score=68.46 Aligned_cols=122 Identities=19% Similarity=0.105 Sum_probs=60.3
Q ss_pred ccccccccccccccccccccccc-CCCCccccccCccEEeeccCccCccccc---hhhHhhccCCcEEEEecCchhHHhh
Q 003996 623 VVLPNLEALELNAINADEIWHYN-QLPGMVPCFQSLTRLIVWGCDKLKYIFS---ASTIQSLEQLQHLEIRLCKSLQEII 698 (780)
Q Consensus 623 ~~l~~L~~L~l~~~~l~~l~~~~-~lP~~~~~l~~L~~L~L~~c~~l~~l~~---~~~l~~L~~L~~L~l~~c~~l~~l~ 698 (780)
...+.|+.+.+..|.+. +.|. .+-..+..+++|+.|+|+++. ++.-.. ...+..+|+|+.|++.+|.- +.-.
T Consensus 182 ~~~~~leevr~~qN~I~--~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll-~~~G 257 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIR--PEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLL-ENEG 257 (382)
T ss_pred HhccccceEEEeccccc--CchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccccc-cccc
Confidence 33466677776665443 1110 011114566778888887765 322111 12445677788888887752 1100
Q ss_pred ccCcccccccccccCcccEEeccCCCCcc-cc-CCCCCccCCcccceeecccCC
Q 003996 699 SEDRTDQVTAYFVFPRVTTLKLDGLPELR-CL-YPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 699 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~-~~-~~~~~~~~~p~L~~L~i~~C~ 750 (780)
...-.+ .-...+|+|+.|.+.+|.-=. .. -........|.|++|.+.+|.
T Consensus 258 a~a~~~--al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 258 AIAFVD--ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHH--HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 000000 011247888888887763110 00 000111346888888888776
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.91 E-value=0.036 Score=53.63 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=31.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
++.|.|++|+|||+|+.++......+ -..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999987765432 34577887654 34444443
No 271
>PRK06921 hypothetical protein; Provisional
Probab=95.91 E-value=0.036 Score=56.77 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=44.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
....+.++|..|+|||+||..+++....+. ...++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 356789999999999999999999876431 244666664 23333332221 11122333343
Q ss_pred CeEEEEEeCCC
Q 003996 255 NKILVILDNIW 265 (780)
Q Consensus 255 k~~LlVlDdv~ 265 (780)
+-=|||+||+.
T Consensus 177 ~~dlLiIDDl~ 187 (266)
T PRK06921 177 KVEVLFIDDLF 187 (266)
T ss_pred CCCEEEEeccc
Confidence 34699999993
No 272
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.90 E-value=0.13 Score=51.03 Aligned_cols=206 Identities=13% Similarity=0.135 Sum_probs=113.1
Q ss_pred ccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhc----cCCCCEEEEEEeCCC----------C--
Q 003996 155 EAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASE----NKLFDRVVFSEVSQT----------P-- 218 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~----------~-- 218 (780)
..+.++++....+......++.+...++|++|.||-|.+..+.+..-. +-.-+..-|.+-+.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 345677777777776665667899999999999999998888876532 111233445433321 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeE-EEEEeCCCCc--cCccccCCCCCCCCCCcEE
Q 003996 219 ---------DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKI-LVILDNIWKH--LDLDTVGIPFGNDHEGCRL 286 (780)
Q Consensus 219 ---------~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~I 286 (780)
.-.-+.++|+++++....-+ ...+++| ++|+-.+++. +.-..+....-.-.+.+|+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 12334455555443221100 0112344 3344433322 1000111111111245666
Q ss_pred EEEeCCh--HHHhhcCCCceEecCCCCHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHHhCCChHHHHHHHHHHh--c--
Q 003996 287 LLTARDI--NVLLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDV-ENCKFKSTAINVAQACGGLPIALTTVARALR--N-- 359 (780)
Q Consensus 287 lvTTR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~--~-- 359 (780)
|+...+. -+.+.-..--.++++..+++|....+.+.+.... .-| .+++.+|+++++|+-.-.-.+...++ +
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 6643321 1111111223688999999999999998876332 222 57999999999997665555555554 1
Q ss_pred -----C--CHHHHHHHHHHhcC
Q 003996 360 -----K--SLHEWKNALRELQT 374 (780)
Q Consensus 360 -----~--~~~~w~~~l~~l~~ 374 (780)
. ..-+|+-++.+...
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHH
Confidence 1 45578877776543
No 273
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.05 Score=57.19 Aligned_cols=85 Identities=25% Similarity=0.367 Sum_probs=60.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHHHHhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD--EAEYRRASRLYERLKN 253 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~ 253 (780)
..++.|-|.+|+|||||.-++..+...+. .+++|+-.+ +..++ +--+++++.+.+. .-.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47999999999999999999999987653 666665443 44433 3446777765432 1223345667777777
Q ss_pred CCeEEEEEeCCCC
Q 003996 254 ENKILVILDNIWK 266 (780)
Q Consensus 254 ~k~~LlVlDdv~~ 266 (780)
.++-++|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 7899999998853
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.89 E-value=0.031 Score=60.04 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=53.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHHHhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 253 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (780)
..++.|.|.+|+|||||+.+++...... -..++|++... +..++ ..-+++++...+.. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4789999999999999999998876543 35678877643 33333 33345666543221 001123445555555
Q ss_pred CCeEEEEEeCCC
Q 003996 254 ENKILVILDNIW 265 (780)
Q Consensus 254 ~k~~LlVlDdv~ 265 (780)
.++-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 567789999874
No 275
>PRK06547 hypothetical protein; Provisional
Probab=95.88 E-value=0.012 Score=55.81 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=29.0
Q ss_pred HHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 166 SIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 166 ~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334445567788999999999999999999998754
No 276
>PRK04328 hypothetical protein; Provisional
Probab=95.88 E-value=0.039 Score=56.08 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=37.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
...++.|.|++|+|||+|+.++......+ -..++|++.... ..++ .+.+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i-~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQV-RRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHH-HHHHHHcCC
Confidence 35789999999999999999987664322 456788887663 3333 333455543
No 277
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.16 Score=55.96 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=79.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
..=|.++|++|.|||-||+.|+|....+ | ++|... +++.. .+| ..+..+..++++-+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNk---YVG------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNK---YVG------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHH---Hhh------hHHHHHHHHHHHhhcCC
Confidence 4568899999999999999999998765 4 555442 11111 111 12234556777777778
Q ss_pred eEEEEEeCCCCcc-------Cc------cccCCCCC--CCCCCcEEEEEeCChHHHh--hcC---CCceEecCCCCHHHH
Q 003996 256 KILVILDNIWKHL-------DL------DTVGIPFG--NDHEGCRLLLTARDINVLL--SMG---SKDNFLIGNLNEEEA 315 (780)
Q Consensus 256 ~~LlVlDdv~~~~-------~~------~~l~~~l~--~~~~gs~IlvTTR~~~v~~--~~~---~~~~~~l~~L~~~e~ 315 (780)
+++|.||.++... .| ..+..-+. ....|.-||-.|...++.. .+. -+...-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999986541 11 11211121 1224555666665554433 111 234566777788888
Q ss_pred HHHHHHHcCC
Q 003996 316 WRLFKIMNGD 325 (780)
Q Consensus 316 ~~Lf~~~~~~ 325 (780)
..+++....+
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 8999888763
No 278
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.86 E-value=0.011 Score=65.33 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=41.6
Q ss_pred ccccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 155 EAFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
..++|-++.+++|++.|. +...+++.++||+|+||||||+.+.+..+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 357899999999999883 456689999999999999999999997764
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=95.84 E-value=0.045 Score=55.90 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+.|+|++|+|||+||..+......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356779999999999999999877543
No 280
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.84 E-value=0.033 Score=58.26 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
.....++|+|++|.|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999998754
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.84 E-value=0.06 Score=54.25 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=53.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------------------
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------------------ 237 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------ 237 (780)
..++.|+|.+|+|||+++.++......+ =..++|++.... ..++.+.+ ++++....+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 5789999999999999999997654322 457888888653 45555543 344432211
Q ss_pred ---hhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 003996 238 ---EAEYRRASRLYERLKNENKILVILDNIW 265 (780)
Q Consensus 238 ---~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 265 (780)
.........+.+.+...+.-++|+|.+-
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1123444555555554455688888864
No 282
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.13 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+.++|+.|+||||+|..+++..-
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 45788999999999999999988753
No 283
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.04 Score=59.26 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=54.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc--CCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN--KLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERL 251 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l 251 (780)
..+++.++|+.|+||||.+..++...... ..-..+..++..... ...+-++..++.++.+................+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999999998876532 122356666665422 233346777777877654322222233333333
Q ss_pred hcCCeEEEEEeCCC
Q 003996 252 KNENKILVILDNIW 265 (780)
Q Consensus 252 ~~~k~~LlVlDdv~ 265 (780)
. +.-++++|...
T Consensus 253 ~--~~DlVLIDTaG 264 (388)
T PRK12723 253 K--DFDLVLVDTIG 264 (388)
T ss_pred C--CCCEEEEcCCC
Confidence 2 34688888874
No 284
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.77 E-value=0.11 Score=45.62 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHHHhh----c---CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 156 AFESRVSTLKSIQNALT----D---ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.++|..-..+.+++++. + .+.-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34565555555555443 2 345689999999999999999999874
No 285
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.76 E-value=0.036 Score=52.89 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=34.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCC
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGL 233 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~ 233 (780)
++.++|++|+||||++..++...... -..++.++.... ....+.+...+++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 67899999999999999999877644 123444443322 1333444444555554
No 286
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.76 E-value=0.023 Score=52.05 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=32.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
|.++|++|+|||+||+.+++.... ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999998832 3445677887777776543
No 287
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.25 Score=55.93 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=74.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..+.+.++|++|.|||.||+.+++..+.. |-.+.+ . ++ .. .+-.++ ...+..++..-...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~v~~-----~----~l----~s----k~vGes-ek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FISVKG-----S----EL----LS----KWVGES-EKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEEeeC-----H----HH----hc----cccchH-HHHHHHHHHHHHcC
Confidence 45689999999999999999999966543 433222 1 11 10 011111 22233444444445
Q ss_pred CeEEEEEeCCCCccCccc-------------cCCCCC--CCCCCcEEEEEeCChHHHhh-----cCCCceEecCCCCHHH
Q 003996 255 NKILVILDNIWKHLDLDT-------------VGIPFG--NDHEGCRLLLTARDINVLLS-----MGSKDNFLIGNLNEEE 314 (780)
Q Consensus 255 k~~LlVlDdv~~~~~~~~-------------l~~~l~--~~~~gs~IlvTTR~~~v~~~-----~~~~~~~~l~~L~~~e 314 (780)
.+..|.+|+++....+.. +...+. ....+..||-||........ ..-...+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 789999999975532221 111111 11223334445544333221 1224578889999999
Q ss_pred HHHHHHHHcCC
Q 003996 315 AWRLFKIMNGD 325 (780)
Q Consensus 315 ~~~Lf~~~~~~ 325 (780)
..+.|..+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998873
No 288
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.0097 Score=56.18 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.8
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999988764
No 289
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.71 E-value=0.063 Score=54.38 Aligned_cols=92 Identities=25% Similarity=0.271 Sum_probs=59.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh--ccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH---
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS--ENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE--- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~--- 240 (780)
.-+-++|.|..|+|||+|+..+.++.. .+.+-+.++++-+++.. ...++.+++...=... .++...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 346789999999999999999887754 12224678888888755 5666776665542221 111111
Q ss_pred --HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 003996 241 --YRRASRLYERLKN--ENKILVILDNIWK 266 (780)
Q Consensus 241 --~~~~~~l~~~l~~--~k~~LlVlDdv~~ 266 (780)
.-..-.+.+++.. +++.|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1123356666654 5899999999843
No 290
>PRK07667 uridine kinase; Provisional
Probab=95.68 E-value=0.017 Score=56.17 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=29.5
Q ss_pred HHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 165 KSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 165 ~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+.|.+.+. ..+..+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444 344579999999999999999999998764
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.66 E-value=0.037 Score=52.74 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=62.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc---c---CCCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCCC--c------h
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE---N---KLFD--RVVFSEVSQTPDIKKIQGEIAEKLGLELS--D------E 238 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~---~---~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~--~------~ 238 (780)
.-.+++|+|+.|+|||||.+.+..+... . ..|. .+.|+ .+ .+.++.+++... + .
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 3468999999999999999988642111 0 0010 12222 21 456666665321 1 1
Q ss_pred hHHHHHHHHHHHHhcCC--eEEEEEeCCCCccC---ccccCCCCCC-CCCCcEEEEEeCChHHHhhcCCCceEec
Q 003996 239 AEYRRASRLYERLKNEN--KILVILDNIWKHLD---LDTVGIPFGN-DHEGCRLLLTARDINVLLSMGSKDNFLI 307 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~IlvTTR~~~v~~~~~~~~~~~l 307 (780)
.-....-.+...+.. + +-++++|+.-..-+ .+.+...+.. ...|..||++|.+...... .+..+.+
T Consensus 90 gGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 112222334444444 5 67889999754422 1122222211 1136668888888766542 3444444
No 292
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.65 E-value=0.048 Score=55.74 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHHhh-cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC-CCCc-----
Q 003996 165 KSIQNALT-DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL-ELSD----- 237 (780)
Q Consensus 165 ~~l~~~L~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~-~~~~----- 237 (780)
+.++..+. +.....++|.|+.|.|||||.+.+....... ...+++.-..-... +-..+++..... +...
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecc-hhHHHHHHHhcccccccccccc
Confidence 33344443 3445789999999999999999999776532 33333321110000 111233322211 1100
Q ss_pred --hhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 238 --EAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 238 --~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
.+.......+...+....+-++++|.+...+.+..+...+ ..|..||+||....+..
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 0111123334445554468899999987665555443333 24777999998765533
No 293
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.65 E-value=0.01 Score=53.39 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~ 200 (780)
|.|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 294
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.63 E-value=0.05 Score=54.05 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=28.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
+|+|.|+.|+||||+|+.+.........=..+..++....+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999877531101234455555443
No 295
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.62 E-value=0.045 Score=55.37 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=73.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCC----------CCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----------
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKL----------FDRVVFSEVSQTP-DIKKIQGEIAEKLGLELS---------- 236 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~----------F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~---------- 236 (780)
+..|+|++|+|||+||..++-....... -..+++++..... .+..-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5679999999999999999876542111 1235556555433 233444444444421100
Q ss_pred -------c---hhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--------cCccccCCCCCC--CCCCcEEEEEeCChHHH
Q 003996 237 -------D---EAEYRRASRLYERLKNENKILVILDNIWKH--------LDLDTVGIPFGN--DHEGCRLLLTARDINVL 296 (780)
Q Consensus 237 -------~---~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------~~~~~l~~~l~~--~~~gs~IlvTTR~~~v~ 296 (780)
. .........+.+.+...+.-+||+|-+... .....+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 012234455555554446789999965321 111112111111 22466777777654221
Q ss_pred h---------------hcCCCceEecCCCCHHHHHH
Q 003996 297 L---------------SMGSKDNFLIGNLNEEEAWR 317 (780)
Q Consensus 297 ~---------------~~~~~~~~~l~~L~~~e~~~ 317 (780)
. .-.....+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 01123466777888887766
No 296
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.077 Score=52.05 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=60.9
Q ss_pred CCcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 152 KGYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
..+..+-|-.+.++++.+... -+..+-|.++|++|.|||-+|+.|+|+-... | +.|-.
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig-- 244 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG-- 244 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh--
Confidence 345566778888888776543 1345678899999999999999999875432 3 22211
Q ss_pred CHHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 003996 219 DIKKIQGEIAEK-LGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 266 (780)
Q Consensus 219 ~~~~i~~~i~~~-l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 266 (780)
.++.+. +| .-......+++.-+.+|-++|.||.++.
T Consensus 245 ------selvqkyvg------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 ------SELVQKYVG------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ------HHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 112211 11 1123455667767777889999999854
No 297
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.60 E-value=0.082 Score=55.05 Aligned_cols=85 Identities=24% Similarity=0.293 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
.+++-|+|+.|+||||||..+....... -..++||.....++. ..++++|.+.+. ...++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 3689999999999999999998876543 456899999887664 445666765332 122233333333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 003996 250 RLKNENKILVILDNIWKH 267 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~~ 267 (780)
.++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 345555568999998654
No 298
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.60 E-value=1.7 Score=46.63 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=41.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS-QTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~ 234 (780)
.+.+|..+|.-|.||||.|..+++.++.+ .+ .+.-|+.. ..+...+-++.++++++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~-kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GK-KVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CC-ceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 46899999999999999999999988763 22 23333332 2334556677888888765
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.60 E-value=0.078 Score=57.86 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=50.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 249 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~~ 249 (780)
+..++.++|++|+||||.|..++.....+.. ..++-|+..... ...+-++..+++.+.+.-. .+.........+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4679999999999999999999887643211 234444443322 2344455566666654221 122233333444
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.....+.=++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4433232377777653
No 300
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.59 E-value=0.065 Score=52.13 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=29.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCC--------CEEEEEEeCCC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLF--------DRVVFSEVSQT 217 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 217 (780)
.++.|.|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 578899999999999999998877643323 35888877665
No 301
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.58 E-value=0.012 Score=57.50 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=23.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
||+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988753
No 302
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.57 E-value=0.017 Score=54.47 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=39.5
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
....+.+..|++..+...+.++.|.+|.+..|.. ..|.+.+-.-+++|.+|.|++|++..|-.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI---t~I~p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI---TRIDPDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcc---eeeccchhhhccccceEEecCcchhhhhh
Confidence 3445566666665555556677777777776665 34555555556667777777777665443
No 303
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.57 E-value=0.07 Score=54.55 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=30.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
..++.|.|++|+|||++|.++......+ -..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4789999999999999999987664332 34678888764
No 304
>PRK04296 thymidine kinase; Provisional
Probab=95.57 E-value=0.024 Score=55.02 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=60.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc---hhHHHHHHHHHHHHhc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD---EAEYRRASRLYERLKN 253 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 253 (780)
.++.|+|+.|.||||+|..+..+.... ...++.+. ..++.......++++++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887644 33344442 1112222233456666654332 112222333333 23
Q ss_pred CCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEEeCChH
Q 003996 254 ENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLTARDIN 294 (780)
Q Consensus 254 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvTTR~~~ 294 (780)
++.-+||+|.+... ++..++...+ ...|..|++|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999999543 1122221111 235778999988643
No 305
>PTZ00494 tuzin-like protein; Provisional
Probab=95.55 E-value=0.5 Score=50.48 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=94.6
Q ss_pred CCcccccchHHHHHHHHHHhh---cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALT---DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
.....++.|+.+-..+.+.|. ...++++.+.|.-|.||++|.+........ ..++|.+.... +-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHH
Confidence 345678888887666666554 456899999999999999999998887654 35778887654 4567888
Q ss_pred HHhCCCCCch--hHHH----HHHHHHHHHhcCCeEEEEEeCCCCccCccccC---CCCCCCCCCcEEEEEeCChHHHh--
Q 003996 229 EKLGLELSDE--AEYR----RASRLYERLKNENKILVILDNIWKHLDLDTVG---IPFGNDHEGCRLLLTARDINVLL-- 297 (780)
Q Consensus 229 ~~l~~~~~~~--~~~~----~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~---~~l~~~~~gs~IlvTTR~~~v~~-- 297 (780)
+.+|.+.-+. +..+ ..........+ +.=+||+- +.+-..+..+. ..+.....-|.|++--=.+....
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g-~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASD-GVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCC-CCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 8888865431 1111 11111111222 33444442 11111111110 11222334566666443333221
Q ss_pred -hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 298 -SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 298 -~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
....-..|.+++++.++|.++-.+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 12233478899999999999887754
No 306
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.18 Score=49.06 Aligned_cols=148 Identities=17% Similarity=0.218 Sum_probs=80.6
Q ss_pred cccc-hHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 156 AFES-RVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 156 ~~~g-R~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
.++| -++.+++|.+.+. -.+.+-+.++|++|.|||-||+.|+++.. ..|+.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHH---
Confidence 3444 4556666555443 23567788999999999999999997543 4567777631
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------c----cccCCCCC--CCCCC
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD------------L----DTVGIPFG--NDHEG 283 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------------~----~~l~~~l~--~~~~g 283 (780)
+.+..+ |. .......++---+..-+.+|..|.+++... . -++...+. ...+.
T Consensus 217 -lvqk~i---ge------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 -LVQKYI---GE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred -HHHHHh---hh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 111111 10 011223333333344678888888765411 0 00111111 12346
Q ss_pred cEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 284 CRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 284 s~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
-+||+.|..-++.. .-..+..++.++-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 67888776544433 11223456777777766666666544
No 307
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.55 E-value=0.069 Score=55.07 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
....+|+|.|+.|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999988876554
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.55 E-value=0.038 Score=60.60 Aligned_cols=87 Identities=14% Similarity=0.209 Sum_probs=49.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
.+++.++|++|+||||++..++........-..+..|+..... ...+-+...++.++.+................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 3689999999999999999988776511113456667654422 1223344555666665432211122222223333
Q ss_pred CeEEEEEeCC
Q 003996 255 NKILVILDNI 264 (780)
Q Consensus 255 k~~LlVlDdv 264 (780)
..=+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 2457888876
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.54 E-value=0.019 Score=62.66 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=40.5
Q ss_pred cccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCC
Q 003996 156 AFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFD 207 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~ 207 (780)
.++||++.++.+...+..+ ..|.|.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 5789999999998888654 4578999999999999999998765443443
No 310
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.058 Score=54.68 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=25.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
-++|.++||+|.|||+|.+.++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999987653
No 311
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.52 E-value=0.014 Score=57.04 Aligned_cols=110 Identities=11% Similarity=0.130 Sum_probs=56.8
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNEN 255 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 255 (780)
+++.|+|+.|+||||++..+....... ....+++--.. ...... ...+..+-..... .......+...+.. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~~---~~~~~~~i~~aLr~-~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHES-KRSLINQREVGLD---TLSFENALKAALRQ-D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccC-ccceeeecccCCC---ccCHHHHHHHHhcC-C
Confidence 478999999999999999888766532 23333322111 100000 0011111111111 11223345555555 5
Q ss_pred eEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHH
Q 003996 256 KILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVL 296 (780)
Q Consensus 256 ~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~ 296 (780)
+=.+++|++.+.+....+... ...|..++.|+...++.
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 679999999776554432222 22355577777655443
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.51 E-value=0.098 Score=53.75 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=39.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE 234 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~ 234 (780)
.+.+++.++|++|+||||++..++...... -..+.+++..... ...+-+...++..+.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 346899999999999999999998877543 2456666654321 1223344556666643
No 313
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.51 E-value=0.086 Score=54.10 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=36.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT 217 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 217 (780)
+..+++.|+|.+|+|||+++.++....... ...++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC
Confidence 345899999999999999999999887755 788999988764
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.50 E-value=0.024 Score=56.20 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=38.9
Q ss_pred HHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHH
Q 003996 163 TLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQ 224 (780)
Q Consensus 163 ~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 224 (780)
...++++.+. ..+..+|+|.|++|+|||||+..+....+.+.+=-.++-|.-|..++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 3445555554 3467899999999999999999999988865433455556656655544443
No 315
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.48 E-value=0.064 Score=56.57 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=30.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS 215 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 215 (780)
...+.++|+.|+|||.||..+++....+ -..++++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH
Confidence 3779999999999999999999988654 2356666543
No 316
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.48 E-value=0.06 Score=62.58 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
+-+.++|++|+|||++|+.+.+..... | +.++.+. +.. +. .+. . ......+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g~-----~-~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VGV-----G-ASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hcc-----c-HHHHHHHHHHHHhcCC
Confidence 448899999999999999998876532 2 2222221 110 00 010 0 1122233333344468
Q ss_pred EEEEEeCCCCccC----------------ccccCCCCC--CCCCCcEEEEEeCChHHHh-h-c---CCCceEecCCCCHH
Q 003996 257 ILVILDNIWKHLD----------------LDTVGIPFG--NDHEGCRLLLTARDINVLL-S-M---GSKDNFLIGNLNEE 313 (780)
Q Consensus 257 ~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~IlvTTR~~~v~~-~-~---~~~~~~~l~~L~~~ 313 (780)
.+|++|+++.... +..+...+. ....+.-||.||...+... . . .....+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999865411 011111111 1123444555776655332 1 1 22457778888888
Q ss_pred HHHHHHHHHcCC
Q 003996 314 EAWRLFKIMNGD 325 (780)
Q Consensus 314 e~~~Lf~~~~~~ 325 (780)
+-.+++..+...
T Consensus 326 ~R~~Il~~~~~~ 337 (644)
T PRK10733 326 GREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHhhc
Confidence 888888887653
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.08 Score=57.45 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=49.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..+++++|+.|+||||++..+..........+.+..+.... .....+-+...++.++.+................+.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~- 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG- 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC-
Confidence 47999999999999999999887653322233444554433 2233344556677777665432222222233333433
Q ss_pred CeEEEEEeCC
Q 003996 255 NKILVILDNI 264 (780)
Q Consensus 255 k~~LlVlDdv 264 (780)
.-++++|-.
T Consensus 270 -~d~VLIDTa 278 (420)
T PRK14721 270 -KHMVLIDTV 278 (420)
T ss_pred -CCEEEecCC
Confidence 345666654
No 318
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.44 E-value=0.033 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998764
No 319
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.41 E-value=0.12 Score=50.40 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=61.2
Q ss_pred cccccchHHHHHHHHH----HhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQN----ALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
...++|-+...+.+++ .+......-|.++|.-|+|||.|++.+.+....+ .-. -|.|++
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k------------- 121 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDK------------- 121 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcH-------------
Confidence 3456676666666654 3334455678899999999999999999988765 222 222222
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhc-CCeEEEEEeCCCCc---cCccccCCCC
Q 003996 230 KLGLELSDEAEYRRASRLYERLKN-ENKILVILDNIWKH---LDLDTVGIPF 277 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~---~~~~~l~~~l 277 (780)
.+......+.+.|+. ..||+|..||+.-+ ...+.++..+
T Consensus 122 ---------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 122 ---------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred ---------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 122233445555543 47899999999543 2344454444
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.38 E-value=0.014 Score=46.04 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 321
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.38 E-value=0.03 Score=51.74 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=28.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE 213 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (780)
..+|.|.|.+|+||||||+.+.+..... -..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 4689999999999999999999998865 34455554
No 322
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.1 Score=53.17 Aligned_cols=86 Identities=21% Similarity=0.299 Sum_probs=55.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH-hC---CCCC--chhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK-LG---LELS--DEAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~---~~~~--~~~~~~~~~~l~~ 249 (780)
.+++=|+|+.|+||||+|.+++-..... -..++||+....+++..+. .++.. +. ...+ .......+..+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4788899999999999999988776544 4589999999999887653 34443 22 1111 1222222333333
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
...+ +--|+|+|.+-
T Consensus 137 ~~~~-~i~LvVVDSva 151 (279)
T COG0468 137 SGAE-KIDLLVVDSVA 151 (279)
T ss_pred hccC-CCCEEEEecCc
Confidence 3332 35688898873
No 323
>PRK14974 cell division protein FtsY; Provisional
Probab=95.37 E-value=0.12 Score=54.45 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=50.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSD----EAEYRRASRLYE 249 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~~ 249 (780)
+..++.++|+.|+||||++..++...... .+ .++.+..... ....+-++..+..++.+... .+....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46899999999999999999998877643 23 3444443211 12334456677777765321 111121222222
Q ss_pred HHhcCCeEEEEEeCCCC
Q 003996 250 RLKNENKILVILDNIWK 266 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~ 266 (780)
.....+.=++++|-...
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222223888888743
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.37 E-value=0.023 Score=57.11 Aligned_cols=63 Identities=27% Similarity=0.349 Sum_probs=46.9
Q ss_pred HHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 165 KSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 165 ~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
.+++..+. .++..+|+|.|.+|+|||||.-.+...+..+.+=-.++-|.-|..++--.++.+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 44555444 4566799999999999999999999999877655567777777777655555443
No 325
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.37 E-value=0.052 Score=55.50 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998775
No 326
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.37 E-value=0.015 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 327
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.35 E-value=0.002 Score=67.14 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=109.0
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCC-CcCc--ccccccCCChhHHHh-hhcccC-CC---CCCCc
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRI-EFGQ--LRSLTLGKLPKVTRF-CREVKT-PS---TSPNR 596 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~-~~~~--L~~L~i~~L~~L~~L-~~~l~~-P~---~~l~~ 596 (780)
.|++++.|.+.++... ......++-..+..|+.|+|..| .+++ |++| ...+++|.|| ..|-.. -. +.+..
T Consensus 162 ~CpnIehL~l~gc~~i-Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKI-TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL-AEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hCCchhhhhhhcceec-cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-HHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 6888888877776532 01122344578888999999884 4544 5552 3556667766 111100 00 00000
Q ss_pred -cCCHHHH-hccccccccccccccccccccccccccccccc-ccccccccccCCCCccccccCccEEeeccCccCccccc
Q 003996 597 -QESQEEL-TASSDEISSDTSTLLFNEKVVLPNLEALELNA-INADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFS 673 (780)
Q Consensus 597 -~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~ 673 (780)
...++++ .++|.++... .+...-...+-+..+++.. +.++..... - .-.....|+.|..++|...... .
T Consensus 240 G~~~l~~~~~kGC~e~~le---~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---~-i~~~c~~lq~l~~s~~t~~~d~-~ 311 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELE---ALLKAAAYCLEILKLNLQHCNQLTDEDLW---L-IACGCHALQVLCYSSCTDITDE-V 311 (483)
T ss_pred cchhhhhhhhcccccccHH---HHHHHhccChHhhccchhhhccccchHHH---H-HhhhhhHhhhhcccCCCCCchH-H
Confidence 0001111 0111111100 0000001112233333333 222211000 0 0123577899999999877655 3
Q ss_pred hhhHh-hccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCC
Q 003996 674 ASTIQ-SLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKI 752 (780)
Q Consensus 674 ~~~l~-~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L 752 (780)
+..++ +-++|+.|.+..|..+....+.. -..+.|.|+.+.+.+|.....-.-.......|.|++|+++.|...
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~------l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTM------LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhh------hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhh
Confidence 34443 67899999999998877665421 112567888888888753322210112246788999999888876
Q ss_pred CC
Q 003996 753 TL 754 (780)
Q Consensus 753 ~~ 754 (780)
+-
T Consensus 386 tD 387 (483)
T KOG4341|consen 386 TD 387 (483)
T ss_pred hh
Confidence 63
No 328
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.34 E-value=0.061 Score=62.50 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=57.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
.+++-|+|++|+|||||+.+++...... -..++|+.....++. ..++++|.+.+. ...+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788999999999999998876654432 356899988877763 377788775431 122333444444
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.+..++.-+||+|-+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 4555567899999985
No 329
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.34 E-value=1.1 Score=46.93 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=33.2
Q ss_pred eEecCCCCHHHHHHHHHHHcCCCCC--CcchHHHHHHHHHHhCCChHHH
Q 003996 304 NFLIGNLNEEEAWRLFKIMNGDDVE--NCKFKSTAINVAQACGGLPIAL 350 (780)
Q Consensus 304 ~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~GlPLai 350 (780)
++++++++.+|+..++.-....... ...-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887652211 1233445667777779998654
No 330
>PRK08233 hypothetical protein; Provisional
Probab=95.31 E-value=0.015 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.26 E-value=0.075 Score=59.71 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=53.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc----------------h
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD----------------E 238 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------~ 238 (780)
...++.|.|++|+|||||+.++......+ -..+++++... +..++...+ +.+|.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 35799999999999999999998876543 34567766544 455555553 555543211 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCC
Q 003996 239 AEYRRASRLYERLKNENKILVILDNI 264 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv 264 (780)
...+.+..+.+.+...+.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 12345555666665545556777765
No 332
>PTZ00301 uridine kinase; Provisional
Probab=95.26 E-value=0.018 Score=56.62 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=23.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999988764
No 333
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.25 E-value=0.079 Score=58.06 Aligned_cols=90 Identities=23% Similarity=0.407 Sum_probs=60.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
.-+-++|.|.+|+|||||+.++.+....+ +-+.++++-+++.. ...++..++...-... .+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34678999999999999999998887654 56788888887654 4566666665432211 111111
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 241 YRRASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 241 ~~~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
...+-.+.++++. ++++||++|++-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1223356666653 589999999984
No 334
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.25 E-value=0.058 Score=51.00 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=45.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC-CeE
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE-NKI 257 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 257 (780)
+.|.|.+|+|||++|.++.... ...++++.-...++.+ +.+.|.+............+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999997651 3456777666666543 44444332222222211112223344444221 234
Q ss_pred EEEEeCC
Q 003996 258 LVILDNI 264 (780)
Q Consensus 258 LlVlDdv 264 (780)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 335
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.25 E-value=0.051 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|.|+.|.|||||++.+.....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987543
No 336
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.24 E-value=0.018 Score=56.89 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 337
>PRK05439 pantothenate kinase; Provisional
Probab=95.21 E-value=0.13 Score=53.58 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
...-+|+|.|.+|+||||+|+.+............+.-++...-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456799999999999999999998866432111234445544433
No 338
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.21 E-value=0.022 Score=53.87 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=52.4
Q ss_pred ccccccccccccccccccccccCCCCccc-cccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCc
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVP-CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDR 702 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~-~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~ 702 (780)
.+++|..|.+..|.+..+.+. +. .+++|..|.|.++. ++.+..+..+..+|.|++|.+-+.+. +.... +
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~------L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~--Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPD------LDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV-EHKKN--Y 131 (233)
T ss_pred CccccceEEecCCcceeeccc------hhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch-hcccC--c
Confidence 456677777777777765444 33 34677777777765 55555555666777777777765432 21111 1
Q ss_pred ccccccccccCcccEEeccCCC
Q 003996 703 TDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 703 ~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
... .+-.+|+|++|++.+-.
T Consensus 132 R~y--vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 132 RLY--VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeE--EEEecCcceEeehhhhh
Confidence 111 23467777777776543
No 339
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.20 E-value=0.068 Score=53.45 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=68.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCCc-------hhHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-----TPDIKKIQGEIAEKLGLELSD-------EAEYR 242 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~~-------~~~~~ 242 (780)
...+++|+|.+|.||||+++.+..-.+.. .+.+++.-.+ .....+-..++++.+|.+.+. -+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999999866532 2333333211 222345566777777754321 11112
Q ss_pred HHH-HHHHHHhcCCeEEEEEeCCCCccCc---cccCCCCC--CCCCCcEEEEEeCChHHHhhcCC
Q 003996 243 RAS-RLYERLKNENKILVILDNIWKHLDL---DTVGIPFG--NDHEGCRLLLTARDINVLLSMGS 301 (780)
Q Consensus 243 ~~~-~l~~~l~~~k~~LlVlDdv~~~~~~---~~l~~~l~--~~~~gs~IlvTTR~~~v~~~~~~ 301 (780)
.+. .+.+.+.- ++-++|.|..-+..+. ..+...+. ....|-..+..|.+-.++..+..
T Consensus 115 rQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 222 23333433 6899999997655331 11111110 12235557777777777665443
No 340
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.17 E-value=0.026 Score=54.74 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE
Q 003996 160 RVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE 213 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (780)
+..+-...++.|. ...++.+.|++|+|||.||...+-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3344455555665 456899999999999999999987766667899888864
No 341
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.16 E-value=0.058 Score=53.06 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=53.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCC--------CCchhHH-----H
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLE--------LSDEAEY-----R 242 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~--------~~~~~~~-----~ 242 (780)
.-++|.|.+|+|||+|+..+.+... -+.++++.+++. ..+.++.+++...-... .++.... .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5788999999999999999999875 345588888765 45666666664331110 1111111 1
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCC
Q 003996 243 RASRLYERLK-NENKILVILDNI 264 (780)
Q Consensus 243 ~~~~l~~~l~-~~k~~LlVlDdv 264 (780)
..-.+.+++. .+++.|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 1123334443 368999999997
No 342
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.15 E-value=0.1 Score=56.95 Aligned_cols=91 Identities=20% Similarity=0.388 Sum_probs=60.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchh-----H
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEA-----E 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~-----~ 240 (780)
.-+-++|.|.+|+|||+|+.++.+..... +-+.++++-+++.. ...++.+++...-... .++.. .
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 34678999999999999999998876533 34778888887655 4566666665432211 11111 1
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLKN--ENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~~--~k~~LlVlDdv~~ 266 (780)
....-.+.++++. ++++|+++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1233456677764 6899999999854
No 343
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.12 E-value=0.063 Score=57.49 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=47.7
Q ss_pred ccccchHHHHHHHHHHhhcC--------------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCC---CEEEEEEeC-C
Q 003996 155 EAFESRVSTLKSIQNALTDA--------------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLF---DRVVFSEVS-Q 216 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 216 (780)
..++|.++.++.+.-++... ..+.|.++|++|+|||++|+.+....... | +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~--fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe--EEEeecceeecCCcc
Confidence 34778888887776555421 23678999999999999999999987643 3 222222222 2
Q ss_pred CCCHHHHHHHHHHH
Q 003996 217 TPDIKKIQGEIAEK 230 (780)
Q Consensus 217 ~~~~~~i~~~i~~~ 230 (780)
..+.+.+++.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 23566666666544
No 344
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.10 E-value=0.024 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 345
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.09 E-value=0.022 Score=56.24 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=24.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|+|+|++|+|||||++.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998764
No 346
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.075 Score=49.93 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..++.|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 347
>PRK06762 hypothetical protein; Provisional
Probab=95.05 E-value=0.021 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.01 E-value=0.049 Score=52.40 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=62.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE---eCCCCCHHHH------HHHHHHHhCCCC------Cc-h
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE---VSQTPDIKKI------QGEIAEKLGLEL------SD-E 238 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~i------~~~i~~~l~~~~------~~-~ 238 (780)
...+++|+|+.|.|||||++.+...... ..+.+++. +.. .+.... ..++++.++... .. .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3468999999999999999999875432 33444432 221 122111 112455555431 01 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---ccccCCCCCC--CCCCcEEEEEeCChHHHh
Q 003996 239 AEYRRASRLYERLKNENKILVILDNIWKHLD---LDTVGIPFGN--DHEGCRLLLTARDINVLL 297 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~IlvTTR~~~v~~ 297 (780)
.-....-.+...+.. ++-++++|+.-..-+ .+.+...+.. ...|..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112222334445555 578999999754432 2222222211 112567888888766543
No 349
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.01 E-value=0.049 Score=62.41 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=58.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLG 232 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 232 (780)
....++|.++.++.|...+... +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+...+++.++.++|
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 4557889999888888777654 46889999999999999999987643 24677888665 44467777777777665
Q ss_pred C
Q 003996 233 L 233 (780)
Q Consensus 233 ~ 233 (780)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 4
No 350
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.099 Score=60.61 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=53.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
..+++++|+.|+||||.+..++......+....+..++.... ....+-++...+.++.+..............+.+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~- 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD- 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC-
Confidence 479999999999999999999887643221234555554322 224566677777887765422222223344444443
Q ss_pred CeEEEEEeCCC
Q 003996 255 NKILVILDNIW 265 (780)
Q Consensus 255 k~~LlVlDdv~ 265 (780)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 2 477778764
No 351
>PF13245 AAA_19: Part of AAA domain
Probab=94.98 E-value=0.062 Score=43.16 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=18.7
Q ss_pred CeEEEEEEeCCCChHHHHHHH-HHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKE-FVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~-v~~~~ 200 (780)
+.+++.|.|++|.|||+++.. +.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788899999999955444 44444
No 352
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.96 E-value=0.12 Score=49.38 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+|.|+|++|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999998764
No 353
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.95 E-value=0.045 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHhh
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
|.|.|++|+||||+|+.+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998765
No 354
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.95 E-value=0.21 Score=62.69 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.+-|.++|++|+|||.||++++.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 457889999999999999999998764
No 355
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.94 E-value=0.0012 Score=73.20 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=85.8
Q ss_pred hhhccceEEEeecCcccccCCCCC-CCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhH
Q 003996 502 DALKKCYAISLLNSSIHEVSEEFE-CPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 502 ~~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L 580 (780)
..|.++-..+...|....+..+.. ++.+++|.+..|... ++ .++..+++|+.|||+.|.+..+++++...++ |
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~---~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT---KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh---hh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence 345566666666665544443333 678999999887653 22 3678999999999999999888887755555 5
Q ss_pred HHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEE
Q 003996 581 TRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRL 660 (780)
Q Consensus 581 ~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L 660 (780)
+.|. +.. ..++. ...+.++.+|+.|++++|-|.+... -.| ++.|..|+.|
T Consensus 235 ~~L~----lrn------N~l~t----------------L~gie~LksL~~LDlsyNll~~hse--L~p--LwsLs~L~~L 284 (1096)
T KOG1859|consen 235 QLLN----LRN------NALTT----------------LRGIENLKSLYGLDLSYNLLSEHSE--LEP--LWSLSSLIVL 284 (1096)
T ss_pred eeee----ecc------cHHHh----------------hhhHHhhhhhhccchhHhhhhcchh--hhH--HHHHHHHHHH
Confidence 5440 000 00111 1245678899999999977765332 234 6788999999
Q ss_pred eeccCc
Q 003996 661 IVWGCD 666 (780)
Q Consensus 661 ~L~~c~ 666 (780)
+|.|++
T Consensus 285 ~LeGNP 290 (1096)
T KOG1859|consen 285 WLEGNP 290 (1096)
T ss_pred hhcCCc
Confidence 999987
No 356
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.92 E-value=0.11 Score=49.23 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=57.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEE-------EeCCCCCH--HHHHHHHHHHhCCCCCc-hhHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFS-------EVSQTPDI--KKIQGEIAEKLGLELSD-EAEYRRA 244 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~i~~~i~~~l~~~~~~-~~~~~~~ 244 (780)
...+++|+|+.|.|||||++.+....... .+.+++ .+.+.... ..+.+.+... .... ..-....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 34689999999999999999998764321 121111 12222211 1222222210 1111 1122233
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCccCc---cccCCCCCCCCCCcEEEEEeCChHHH
Q 003996 245 SRLYERLKNENKILVILDNIWKHLDL---DTVGIPFGNDHEGCRLLLTARDINVL 296 (780)
Q Consensus 245 ~~l~~~l~~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~IlvTTR~~~v~ 296 (780)
-.+...+.. ++-++++|+.-+.-+. ..+...+... +..||++|.+....
T Consensus 100 v~laral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 100 LAFARLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 344455554 5788999987544321 1121111111 34577788776554
No 357
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.91 E-value=0.027 Score=54.66 Aligned_cols=29 Identities=45% Similarity=0.598 Sum_probs=25.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
.+.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999988754
No 358
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.91 E-value=0.066 Score=63.23 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=86.9
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh-hccCCCCEEEEEEeCCC---CCHHHHH------HHHHHHhCCCCCchhHHHH
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA-SENKLFDRVVFSEVSQT---PDIKKIQ------GEIAEKLGLELSDEAEYRR 243 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~---~~~~~i~------~~i~~~l~~~~~~~~~~~~ 243 (780)
.+..++.|+|+.|.||||+.+.+.-.. ..+. -++|..+.. .-...++ ..+...+.. -......
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt---fS~~m~~ 392 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSEIPYFEEIFADIGDEQSIEQNLST---FSGHMKN 392 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCccccccchhheeeecChHhHHhhhhhH---HHHHHHH
Confidence 345789999999999999999987652 1110 011111110 0000110 011111100 0111112
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCccCc---ccc----CCCCCCCCCCcEEEEEeCChHHHhhcCCCceEecCCCCHH-HH
Q 003996 244 ASRLYERLKNENKILVILDNIWKHLDL---DTV----GIPFGNDHEGCRLLLTARDINVLLSMGSKDNFLIGNLNEE-EA 315 (780)
Q Consensus 244 ~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~l----~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~L~~~-e~ 315 (780)
...+...+ .++-|+++|.+-.--+. ..+ ...+ ...|+.+|+||..............+.-..+..+ +.
T Consensus 393 ~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~ 468 (771)
T TIGR01069 393 ISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVLFDEET 468 (771)
T ss_pred HHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCC
Confidence 22333333 35799999998654221 111 1122 1247889999998776542211111111001100 00
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 003996 316 WRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQ 373 (780)
Q Consensus 316 ~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 373 (780)
.. |..++-...+. ...|-.|++++ |+|-.+..-|..+.+....++..++.++.
T Consensus 469 l~-p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 469 LS-PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred Cc-eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00 00111111111 24567787776 78888888887776555556666666543
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.90 E-value=0.06 Score=59.54 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=52.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHHHhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 253 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (780)
..++.|.|.+|+|||||+.+++.....+ -..++|++... +..++. .-++.++...+.. ........+.+.+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIK-LRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999998876532 34678877654 333432 2255666432210 000113344444544
Q ss_pred CCeEEEEEeCCC
Q 003996 254 ENKILVILDNIW 265 (780)
Q Consensus 254 ~k~~LlVlDdv~ 265 (780)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 456788888874
No 360
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.89 E-value=0.023 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999765
No 361
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.83 E-value=0.1 Score=52.38 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=59.1
Q ss_pred hhHhHHHhhhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003996 16 LAPPAERQLVYLLERNYSANLENLKAEMEKLMVERTSIQRRVSEA-KEKGEDIEEKVEKWLVSANGIIDRAAKFVEHE 92 (780)
Q Consensus 16 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~v~~wl~~l~~~~~~~ed~ld~~ 92 (780)
.++++.+.+-.+. ..|.+.+..++.+++-++.+++++|.|+++. ++...+.+ .......++.+.||++|.++|-.
T Consensus 297 yVdFlL~NLkdfq-~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~-~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKDFQ-GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHD-TNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHHHh-ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhh-hhhhHHHHHHHHHhheeeeeehh
Confidence 4566666666554 3555678899999999999999999999987 44343334 49999999999999999999864
No 362
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.095 Score=49.89 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|+|+.|.|||||.+.++.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999999987654
No 363
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.82 E-value=0.21 Score=50.04 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=36.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
..++.|.|.+|+||||++.++......+ -..++|++... +..++... +++++.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFGM 72 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhCC
Confidence 5789999999999999999987654322 45788887644 33444433 455553
No 364
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.025 Score=50.52 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=40.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
.+-|.|.|.+|+||||++..++....- -|+++|.-.....+....-+..... .-++......|-..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y~c~--i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEYKCH--ILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhcccccccCc--cccHHHHHHHHHHHHhc
Confidence 356889999999999999999965542 3677776444333333322222211 12333444455555544
No 365
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.81 E-value=0.069 Score=58.15 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhhc-------C---------CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALTD-------A---------NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|.+..++.+...+.+ . ....+.++|++|+|||++|+.+++...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478998888877554421 0 235689999999999999999997664
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.80 E-value=0.022 Score=49.43 Aligned_cols=24 Identities=46% Similarity=0.728 Sum_probs=21.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhc
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
|.|+|++|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887664
No 367
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.79 E-value=0.14 Score=47.55 Aligned_cols=115 Identities=25% Similarity=0.221 Sum_probs=60.9
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe---CCCCCHHHHHHHHH----HHhCCC--C--Cc-hhHHH--
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV---SQTPDIKKIQGEIA----EKLGLE--L--SD-EAEYR-- 242 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~i~~~i~----~~l~~~--~--~~-~~~~~-- 242 (780)
..|-|++..|.||||+|...+-+.... -..+.++.. ........+++.+- .+.+.. + .+ .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888999999999999888776543 223444332 22334444443330 000110 0 11 11111
Q ss_pred --HHHHHHHHHhcCCeEEEEEeCCCCcc-----CccccCCCCCCCCCCcEEEEEeCCh
Q 003996 243 --RASRLYERLKNENKILVILDNIWKHL-----DLDTVGIPFGNDHEGCRLLLTARDI 293 (780)
Q Consensus 243 --~~~~l~~~l~~~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~IlvTTR~~ 293 (780)
......+.+..++-=|||||++-... +.+++...+.....+.-||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22233444444455699999985442 2333333333334466799999974
No 368
>PRK03839 putative kinase; Provisional
Probab=94.76 E-value=0.026 Score=54.32 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=22.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 369
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.75 E-value=0.034 Score=50.82 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=28.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998754 355555555554
No 370
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.75 E-value=0.053 Score=48.64 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhc--CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 162 STLKSIQNALTD--ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
++.+++-+.+.. ....+|.+.|.-|+||||+++.+++....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344444444432 33468999999999999999999998754
No 371
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.74 E-value=0.21 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
++.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 372
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.73 E-value=0.048 Score=61.08 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=42.7
Q ss_pred ccccchHHHHHHHHHHhhc-----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe
Q 003996 155 EAFESRVSTLKSIQNALTD-----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV 214 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (780)
..+.--.+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 3444456678888888872 2357999999999999999999999875 666778643
No 373
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.71 E-value=0.1 Score=56.48 Aligned_cols=88 Identities=20% Similarity=0.377 Sum_probs=54.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCchhH------
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE-------LSDEAE------ 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~~~~~~------ 240 (780)
....++|+|..|+|||||++.+.+... .+.++.+-+++.. .+.++.++++..-+.. ..+.+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346799999999999999999986432 3566667777654 3455666655442221 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
...+-.+.+++. .++++|+++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112234555553 36899999999843
No 374
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.70 E-value=0.028 Score=53.04 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=59.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT--PDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK 252 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 252 (780)
...+++|.|+.|.|||||.+.+..... .....+++.-... .+..+. ..+.++.-..-..-....-.+...+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh
Confidence 346899999999999999999986543 2344555432111 111111 11111111111111222333444454
Q ss_pred cCCeEEEEEeCCCCccC---ccccCCCCCC-CCCCcEEEEEeCChHHHh
Q 003996 253 NENKILVILDNIWKHLD---LDTVGIPFGN-DHEGCRLLLTARDINVLL 297 (780)
Q Consensus 253 ~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~IlvTTR~~~v~~ 297 (780)
. ++-++++|+.-+.-+ .+.+...+.. ...|..||++|.+.....
T Consensus 99 ~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 R-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred c-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4 578999999865432 1122122211 123566888888766444
No 375
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.68 E-value=0.15 Score=55.53 Aligned_cols=88 Identities=17% Similarity=0.310 Sum_probs=54.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
....++|+|..|+|||||++.+++... .+.++++-+++.. .+.++..+.+..-+.. .+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999987654 3455666676544 3445555554433221 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
....-.+.+++. .++++|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 112334555553 36899999999843
No 376
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.63 E-value=0.062 Score=53.86 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
..++.|.|++|+|||+++.++......+ .=..++|++.... ..++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHH
Confidence 4799999999999999999977554322 0245788877553 3444444
No 377
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.028 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=24.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
..+|+|-||=|+||||||+.+.++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999999874
No 378
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.63 E-value=0.26 Score=54.00 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=55.4
Q ss_pred CeEEEEEEeCCCChHHHHH-HHHHHHhhc-----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CC--------CCchh
Q 003996 175 NVSIIGVYGMGGIGKTTLV-KEFVRQASE-----NKLFDRVVFSEVSQTPDIKKIQGEIAEKLG-LE--------LSDEA 239 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-~~--------~~~~~ 239 (780)
.-+-++|.|..|+|||+|| ..+.+.... .+.-+.++++.+++..+...-+.+.+++-+ .. .++..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 666766532 123457888899887654333444444444 21 11111
Q ss_pred HHH-----HHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 240 EYR-----RASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 240 ~~~-----~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
... ..-.+.+++. .++..|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 1223444443 36889999999854
No 379
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.62 E-value=0.073 Score=51.71 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=35.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS 236 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (780)
.|+|+|-||+||||+|..+......++. ..+.-|....++++. .+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCCC
Confidence 5899999999999999997776665533 345556666665544 45565543
No 380
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.60 E-value=0.097 Score=57.97 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=50.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHHHhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDE--AEYRRASRLYERLKN 253 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (780)
..++.|.|.+|+|||||+.++....... -..++|++... +..++. .-++.++...+.. ........+.+.+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~-~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIK-MRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHH-HHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4789999999999999999998766533 23577876544 333332 2234455432110 000113344455555
Q ss_pred CCeEEEEEeCCC
Q 003996 254 ENKILVILDNIW 265 (780)
Q Consensus 254 ~k~~LlVlDdv~ 265 (780)
.+.-++|+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 466788888874
No 381
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.71 Score=45.41 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=42.1
Q ss_pred ccccCCCcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 147 WLKSNKGYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 147 ~~~~~~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+..+...+..+-|-++.++++++++. -...+-+..+|++|.|||-+|+..+..-.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 34444556778889999999998875 12356788999999999999998877654
No 382
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.60 E-value=0.041 Score=52.21 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=32.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
..++.+.|+.|+|||.+|+.+.+.... ......+-++.+....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 467889999999999999999998873 1245566667665444
No 383
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.21 Score=45.79 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=34.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 234 (780)
..++.|+|.+|+||||+.+.+.... +. +. .-+.-++.-+++...|..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~---------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HK---------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--ce---------eeeHhHHHHHHHHHhCCc
Confidence 5799999999999999999888776 21 11 124456677777777654
No 384
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.57 E-value=0.074 Score=48.97 Aligned_cols=103 Identities=24% Similarity=0.264 Sum_probs=54.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLEL-SDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~ 253 (780)
...+++|+|+.|.|||||++.+...... ....+|+.-.. .++.-. -.... ...-.+...+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~-~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGE-KMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHH-HHHHHHHHHHhc
Confidence 3468999999999999999999876532 23344432100 000000 01111 222234444544
Q ss_pred CCeEEEEEeCCCCccC---ccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 254 ENKILVILDNIWKHLD---LDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 254 ~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
++-++++|+.-..-+ ...+...+... +..||++|.+.....
T Consensus 88 -~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 567999999754422 11221122111 245888888766554
No 385
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.56 E-value=0.044 Score=54.10 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=40.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEE-------EeCCCCCHHHH--HHHHHHHhCCCCCc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFS-------EVSQTPDIKKI--QGEIAEKLGLELSD 237 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~~~i--~~~i~~~l~~~~~~ 237 (780)
....|.++||+|+||||+.+.++.+...+.....++=. ....+.++++. .++..++.++...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 35678899999999999999999988766332222221 11223455543 35667776665443
No 386
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=1.3 Score=46.19 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=88.9
Q ss_pred HHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHh--------hccCCCCEEEEEEe-CCCCCHHHHHHHHHHHhCC
Q 003996 164 LKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQA--------SENKLFDRVVFSEV-SQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 164 ~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~~l~~ 233 (780)
++.+.+.+..+. ..+..++|..|.||+++|..+.+.. ....|-+...++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555555444 4677799999999999999999886 22222223444432 2223333332 33433322
Q ss_pred CCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeC-ChHHHhh-cCCCceEecCC
Q 003996 234 ELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTAR-DINVLLS-MGSKDNFLIGN 309 (780)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR-~~~v~~~-~~~~~~~~l~~ 309 (780)
..- ..+++-++|+|++.... ....+...+-....++.+|++|. ...+... ......+++.+
T Consensus 84 ~~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SSF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CCc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 110 11356788889886542 22333333333334566665554 3444433 33456899999
Q ss_pred CCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC
Q 003996 310 LNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG 345 (780)
Q Consensus 310 L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 345 (780)
+++++..+.+... + .+ .+.+..++...+|
T Consensus 149 l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 149 PDQQKILAKLLSK-N---KE---KEYNWFYAYIFSN 177 (299)
T ss_pred CCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCC
Confidence 9999998887764 2 11 1345566666666
No 387
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.55 E-value=0.22 Score=54.54 Aligned_cols=91 Identities=22% Similarity=0.422 Sum_probs=58.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
.-+-++|.|.+|+|||||+.++........ -+.++++-+++.. .+.++++++...=... .+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999887765432 2467778787654 4566777766542221 111111
Q ss_pred HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLK--NENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~--~~k~~LlVlDdv~~ 266 (780)
....-.+.++++ .++++||++|++-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 112334566663 36899999999843
No 388
>PRK04040 adenylate kinase; Provisional
Probab=94.55 E-value=0.035 Score=53.66 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=32.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
..+|+|+|++|+||||+++.+.+..... +.. ++ ..++..+++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~--~~~---~~------~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKED--YKI---VN------FGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccC--CeE---Ee------cchHHHHHHHHcCC
Confidence 3589999999999999999999887411 222 22 23455666666664
No 389
>PRK13768 GTPase; Provisional
Probab=94.47 E-value=0.25 Score=50.35 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=27.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV 214 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (780)
.++.|.|++|+||||++..+....... -..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEEC
Confidence 578999999999999999998877643 223444443
No 390
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.45 E-value=0.026 Score=49.78 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=18.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
|.|.|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999987644
No 391
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.41 E-value=0.061 Score=56.86 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 154 YEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999998888777777777778899999999999999998765
No 392
>PRK00625 shikimate kinase; Provisional
Probab=94.38 E-value=0.034 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998765
No 393
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.35 E-value=0.056 Score=57.00 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=38.9
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+...++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 445678999988887765555555678999999999999999998765
No 394
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.34 E-value=0.046 Score=51.58 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
...+++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999887653
No 395
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.32 E-value=0.27 Score=53.61 Aligned_cols=92 Identities=21% Similarity=0.417 Sum_probs=59.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
.-+-++|.|.+|+|||||+.++........ -..++++-+++.. .+.++++++...=... .+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999988765432 3467788887654 4567777765432211 111111
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 003996 241 YRRASRLYERLKN--ENKILVILDNIWKH 267 (780)
Q Consensus 241 ~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 267 (780)
.-..-.+.++++. ++++||++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1123456677754 58999999998543
No 396
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.32 E-value=0.085 Score=52.93 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 164 LKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 164 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.+.+...+.... +..|.|++|+||||++..+....
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344444443322 78899999999998877777766
No 397
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.32 E-value=0.086 Score=54.24 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=42.1
Q ss_pred cccccchHHHHHH---HHHHhhcC--CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCC
Q 003996 154 YEAFESRVSTLKS---IQNALTDA--NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFD 207 (780)
Q Consensus 154 ~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~ 207 (780)
..+++|..+..+. +++++.+. ..+.|.|+|++|.|||+||-.+.+.....-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 4578897766553 56666644 358899999999999999999999998765663
No 398
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.099 Score=50.71 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCccCccccC------CCCCCCCCCcEEEEEeCChHHHhhcCCCceEe
Q 003996 245 SRLYERLKNENKILVILDNIWKHLDLDTVG------IPFGNDHEGCRLLLTARDINVLLSMGSKDNFL 306 (780)
Q Consensus 245 ~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~------~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~ 306 (780)
..+.+.+.- ++-+.|||..++--+.+.+. ..+. ..|+-+++.|..+.++....++.++-
T Consensus 153 ~EilQ~~~l-ePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 153 NEILQLLLL-EPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHhc-CCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 345555544 57899999998775544432 1222 23556788888888888766655443
No 399
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.28 E-value=0.11 Score=56.42 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh-----CC--CCCchhH-----HHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL-----GL--ELSDEAE-----YRR 243 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-----~~--~~~~~~~-----~~~ 243 (780)
...++|+|+.|+|||||++.+...... ...+++..-....++.++....+... +. ..++... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999988764332 23445544334445555444443322 11 1111111 112
Q ss_pred HHHHHHHHhc-CCeEEEEEeCCCC
Q 003996 244 ASRLYERLKN-ENKILVILDNIWK 266 (780)
Q Consensus 244 ~~~l~~~l~~-~k~~LlVlDdv~~ 266 (780)
.-.+.+++.. ++..|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 2344555533 6889999999843
No 400
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.28 E-value=0.051 Score=55.85 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHH
Q 003996 165 KSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRA 244 (780)
Q Consensus 165 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~ 244 (780)
..+++.+...+ +-+.++|+.|+|||++++...+...... | ...-++.+...+...+++-+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------- 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGR------- 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTE-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-------
Confidence 44555555554 4558999999999999999886544321 1 233455555544444332211111100000
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCc
Q 003996 245 SRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 245 ~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
.. .-..+|+.++.+||+.-+
T Consensus 93 --~~-gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 --VY-GPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp --EE-EEESSSEEEEEEETTT-S
T ss_pred --CC-CCCCCcEEEEEecccCCC
Confidence 00 001257899999998544
No 401
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.45 Score=47.62 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=58.9
Q ss_pred CcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
.+..+-|-+..+++|.+... -...+-|.++|.+|.|||-||+.|+|.-... |-.+
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv---------- 250 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV---------- 250 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh----------
Confidence 45567788888888888764 1235667799999999999999999876543 4221
Q ss_pred HHHHHHHHH-HHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 003996 220 IKKIQGEIA-EKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 266 (780)
Q Consensus 220 ~~~i~~~i~-~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 266 (780)
+-.+++ +.+|.. ..+..++++.-...-+.++.+|.++.
T Consensus 251 ---vGseLiQkylGdG------pklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 251 ---VGSELIQKYLGDG------PKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred ---hhHHHHHHHhccc------hHHHHHHHHHHHhcCCceEEeehhhh
Confidence 112222 223321 23445555555555678888888753
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.26 E-value=0.041 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 403
>PRK08149 ATP synthase SpaL; Validated
Probab=94.26 E-value=0.17 Score=54.95 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=53.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
....++|+|..|+|||||++.++.... -+.++...++. ..++.++..+........ .+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346789999999999999998886543 34444444543 345566666666543221 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
......+.+++. .++++||++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 112334455553 36899999999843
No 404
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.25 E-value=0.031 Score=54.72 Aligned_cols=23 Identities=48% Similarity=0.744 Sum_probs=21.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+|+|.|++|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 405
>PRK06851 hypothetical protein; Provisional
Probab=94.24 E-value=0.7 Score=49.26 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=34.2
Q ss_pred cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC
Q 003996 173 DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT 217 (780)
Q Consensus 173 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 217 (780)
++-.+++.|.|++|+|||||++.++.....+ .++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 3446889999999999999999999988654 3666666555544
No 406
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.23 E-value=0.054 Score=57.30 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+...++|.++.+..|...+.+.+..-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4457889999888888888888888888999999999999999987654
No 407
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.22 E-value=0.13 Score=52.35 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=22.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.|.++|.+|+||||+|+.+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988764
No 408
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.19 E-value=0.081 Score=54.14 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=53.4
Q ss_pred HHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------hh
Q 003996 167 IQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD-------EA 239 (780)
Q Consensus 167 l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~ 239 (780)
..+++...+..++.|.|.+|+|||||+..+.+..... . .++.+ .....+..+ .+.++..+.+.-. ..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 4444556789999999999999999999999987643 2 22222 222222222 2234444433111 11
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 003996 240 EYRRASRLYERLKNENKILVILDNIWK 266 (780)
Q Consensus 240 ~~~~~~~l~~~l~~~k~~LlVlDdv~~ 266 (780)
+..........|.....-++|++++-+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 122333344444443446788999864
No 409
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.18 E-value=0.056 Score=61.28 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=40.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
....++|.+..++.+...+.......+.|+|++|+|||++|+.+++..+
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456889999999998887766566778999999999999999987543
No 410
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.18 E-value=0.18 Score=54.87 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=60.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc-----------CCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CC--------
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN-----------KLFDRVVFSEVSQTPDIKKIQGEIAEKLG-LE-------- 234 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-----------~~F~~~~wv~vs~~~~~~~i~~~i~~~l~-~~-------- 234 (780)
.-+-++|.|.+|+|||||+.++.+..... ..=..++++.+++.....+.+.+.+..-+ ..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 34678999999999999999998876510 00115677888887777776666666655 21
Q ss_pred CCchhHH-----HHHHHHHHHHh--cCCeEEEEEeCCCC
Q 003996 235 LSDEAEY-----RRASRLYERLK--NENKILVILDNIWK 266 (780)
Q Consensus 235 ~~~~~~~-----~~~~~l~~~l~--~~k~~LlVlDdv~~ 266 (780)
.++.... -..-.+.+++. .++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 12335667776 36899999999843
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.16 E-value=0.035 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 412
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.14 E-value=0.13 Score=59.31 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=52.3
Q ss_pred cccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 154 YEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
...++|.++.++.+...+.... .+.++|++|+||||+|+.+.+..... .|...+++.-+ ..+...+++.++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 4567899888888877776543 56699999999999999999877643 34434433322 23445557777766654
No 413
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.12 E-value=0.043 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+++|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 414
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.08 E-value=0.11 Score=54.39 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=38.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
.+++.+.|.|||||||+|...+-..... ...++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999977766654 345777877777777776654
No 415
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.07 E-value=0.17 Score=52.98 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=26.1
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
....+|+|+|++|+|||||+..+......+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999999876654
No 416
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.04 E-value=0.042 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 417
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.04 E-value=0.41 Score=49.41 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=37.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
..++.|.|.+|+||||++.+++.....+ +-..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 4588899999999999999988765432 124688887765 445555555443
No 418
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.03 E-value=0.06 Score=51.91 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=30.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS 215 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 215 (780)
.+++.|+|+.|+|||||++.+......+ |...++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeeccc
Confidence 4688999999999999999999987644 7555555544
No 419
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.01 E-value=0.11 Score=56.08 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 162 STLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 162 ~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
...+.+++.+.......+.|.|+||+|||+|.+.+.+..+..
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 345666666666667888999999999999999999988653
No 420
>PRK06217 hypothetical protein; Validated
Probab=94.00 E-value=0.042 Score=53.02 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCC--CEEEEE
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLF--DRVVFS 212 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F--~~~~wv 212 (780)
.|.|.|.+|+||||+|+.+.+..... +| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 48899999999999999999887542 33 446663
No 421
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.00 E-value=0.19 Score=52.44 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=41.1
Q ss_pred cccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHH
Q 003996 156 AFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKI 223 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 223 (780)
.++=+.+....+..++..+ +.|.|.|++|+||||+|+.++...... .+.|..+...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 4444455566777777543 468999999999999999999987632 234555554444333
No 422
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.00 E-value=0.15 Score=51.36 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=42.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC--CHHHHHHHHHHH----hCCCC--CchhHHHHHHHHHH
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP--DIKKIQGEIAEK----LGLEL--SDEAEYRRASRLYE 249 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~----l~~~~--~~~~~~~~~~~l~~ 249 (780)
+|+|.|.+|+||||+++.+.+..+... ..+..++..... +-...-+.+..+ ..... ++..+.+.+....+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999998776432 123444433322 222222222222 22222 34455556666666
Q ss_pred HHhcC
Q 003996 250 RLKNE 254 (780)
Q Consensus 250 ~l~~~ 254 (780)
.+.++
T Consensus 79 ~L~~g 83 (277)
T cd02029 79 TYGET 83 (277)
T ss_pred HHHcC
Confidence 66553
No 423
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.77 Score=47.87 Aligned_cols=29 Identities=38% Similarity=0.481 Sum_probs=25.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
..+-|.++||+|.|||-||+.++.+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 45678899999999999999999987754
No 424
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.98 E-value=0.2 Score=54.44 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhHH----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAEY---- 241 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~~---- 241 (780)
+...++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++.++.+..-+.. .+.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999988654 3567777777654 4555554443322211 1111111
Q ss_pred -HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 242 -RRASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 242 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
-..-.+.++++ .++++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12234555553 36899999999843
No 425
>PLN02924 thymidylate kinase
Probab=93.98 E-value=0.38 Score=47.68 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=35.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
...|+|.|..|+||||+++.+.+..... .+....+-..+......+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999998864 3444333222223345555555554
No 426
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.98 E-value=0.04 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 427
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.97 E-value=0.51 Score=49.72 Aligned_cols=39 Identities=28% Similarity=0.495 Sum_probs=30.4
Q ss_pred HHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 165 KSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 165 ~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
..+.+.+. ..+..+|+|.|.+|+|||||+..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999998887754
No 428
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.97 E-value=0.048 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 429
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.96 E-value=0.1 Score=54.41 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=60.3
Q ss_pred ccccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe----CCCC---CHH
Q 003996 155 EAFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV----SQTP---DIK 221 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~---~~~ 221 (780)
..|+|-++.++++++.+. +..-+++.++||.|.||||||..+.+-.+.- .+|.-. ...+ =..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y-----~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY-----PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE-----EEEEecCCccccChhhhCCH
Confidence 378999999999999886 3457899999999999999999999887642 333321 1111 134
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHh
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLK 252 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 252 (780)
++-.++.+.++...+..-......++.+...
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~ 166 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYG 166 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhC
Confidence 4555666667664443222222334444443
No 430
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.94 E-value=0.05 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhc
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
|.|.|.+|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998753
No 431
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.93 E-value=0.16 Score=54.50 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=48.2
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCeEEEEEEeCCCChHHHHHHHHHHHhhcc-CCCCEEEEEEeC-CCC
Q 003996 155 EAFESRVSTLKSIQNALTD--------------ANVSIIGVYGMGGIGKTTLVKEFVRQASEN-KLFDRVVFSEVS-QTP 218 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs-~~~ 218 (780)
..++|.++.++.+..++.. .....+.++|++|+|||++|+.+....... -+++..-|...+ ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3578888888888776642 013678999999999999999999886532 011222222221 223
Q ss_pred CHHHHHHHHHHH
Q 003996 219 DIKKIQGEIAEK 230 (780)
Q Consensus 219 ~~~~i~~~i~~~ 230 (780)
+...+++.+...
T Consensus 95 d~e~~ir~L~~~ 106 (443)
T PRK05201 95 DVESIIRDLVEI 106 (443)
T ss_pred CHHHHHHHHHHH
Confidence 555666666544
No 432
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.92 E-value=0.044 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 433
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.91 E-value=0.18 Score=54.75 Aligned_cols=47 Identities=26% Similarity=0.188 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhh-------c-------C----CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 155 EAFESRVSTLKSIQNALT-------D-------A----NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~-------~-------~----~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..++|.++.++.+...+. . + ....+.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 356899888888765551 1 0 125799999999999999999997664
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.89 E-value=0.49 Score=49.79 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=29.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV 214 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (780)
+..+++++|++|+||||++..++...... -..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 46899999999999999999999887643 123444443
No 435
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.88 E-value=0.099 Score=54.70 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=33.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQ 224 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 224 (780)
+++.+.|-|||||||+|...+-....+ -..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~--G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR--GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC--CCCeeEeecCCCccHHHHh
Confidence 578999999999999998887776654 2346666666665555544
No 436
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.80 E-value=0.069 Score=52.65 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=27.1
Q ss_pred hhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 171 LTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 171 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+...++++|+++|..|+|||||..++.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999999988754
No 437
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.78 E-value=0.015 Score=57.21 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred ccccccccccccccccccccccCCCCccccccCccEEeeccCccCcccc--chhhHhhccCCcEEEEecCchh
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIF--SASTIQSLEQLQHLEIRLCKSL 694 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~--~~~~l~~L~~L~~L~l~~c~~l 694 (780)
.+|+|.+|.+++|.++.+.. .-| +..+.||..|++.+|...+ +. .-..+.-+|+|++|+-.++..-
T Consensus 89 ~~P~l~~l~ls~Nki~~lst--l~p--l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLST--LRP--LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hCCceeEEeecCCccccccc--cch--hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 34888888888877764311 122 5667788888888886333 21 1234556788887776655443
No 438
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.75 E-value=0.24 Score=54.39 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=58.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCC--EEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH----
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFD--RVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE---- 240 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 240 (780)
-+-++|.|..|+|||||+.++.+.....+.+. .++++.+++.. .+.++++++...=... .+....
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 46789999999999999999998765321121 56777776644 5666666665432221 111111
Q ss_pred -HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 003996 241 -YRRASRLYERLK--NENKILVILDNIWK 266 (780)
Q Consensus 241 -~~~~~~l~~~l~--~~k~~LlVlDdv~~ 266 (780)
.-....+.++++ .++++||++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 122345777777 47899999999843
No 439
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.35 Score=54.40 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=36.8
Q ss_pred cccccchHHHHH---HHHHHhhcCC---------eEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 154 YEAFESRVSTLK---SIQNALTDAN---------VSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 154 ~~~~~gR~~~~~---~l~~~L~~~~---------~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
...+-|.++..+ ++++.|.++. ++-+.++|++|.|||.||+.++....+-
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 445667766554 5566665432 4668899999999999999999988764
No 440
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.72 E-value=0.47 Score=49.72 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=37.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIA 228 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~ 228 (780)
.-+.++|.|..|+|||+|++++.+... -+.++++.+++.. .+.+++.++-
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 346889999999999999999988543 4578888887654 4555665543
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.70 E-value=0.049 Score=50.32 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.7
Q ss_pred EEEEEeCCCChHHHHHHHHH
Q 003996 178 IIGVYGMGGIGKTTLVKEFV 197 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~ 197 (780)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999988
No 442
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.13 Score=48.06 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=59.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHhcC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLEL-SDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~~ 254 (780)
..+++|+|..|.|||||++.+...... ....+++......... .......++... -...+ ...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~--~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~- 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLP--LEELRRRIGYVPQLSGGQ-RQRVALARALLL- 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCC--HHHHHhceEEEeeCCHHH-HHHHHHHHHHhc-
Confidence 368999999999999999999875432 3445554322111100 011111122111 11122 222334444544
Q ss_pred CeEEEEEeCCCCccC---ccccCCCCCC-CCCCcEEEEEeCChHHHhh
Q 003996 255 NKILVILDNIWKHLD---LDTVGIPFGN-DHEGCRLLLTARDINVLLS 298 (780)
Q Consensus 255 k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~IlvTTR~~~v~~~ 298 (780)
.+-++++|+.-..-+ ...+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 468999999865432 1112111111 1124568888887766554
No 443
>PHA02774 E1; Provisional
Probab=93.69 E-value=0.11 Score=57.77 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHHHHHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 163 TLKSIQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 163 ~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
-+..+..++.. .+..-+.|+|++|+|||.+|..+.+-.. -..+.||+....+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s~F 472 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKSHF 472 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcccc
Confidence 45566666653 2346899999999999999999998764 2345677764433
No 444
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.69 E-value=0.19 Score=48.96 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 445
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.69 E-value=0.33 Score=48.48 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=34.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
..++.|.|.+|+|||++|.+++.....+ =..++|++... +..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 5789999999999999999988765433 35678887765 34444333
No 446
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.67 E-value=0.14 Score=48.51 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=30.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
++.|.|.+|+||||+|..+...... .++++...... -.+..+.|...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHH
Confidence 5889999999999999999876432 23444433333 33444555443
No 447
>PRK05922 type III secretion system ATPase; Validated
Probab=93.67 E-value=0.32 Score=52.97 Aligned_cols=88 Identities=19% Similarity=0.331 Sum_probs=51.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-------Cchh------H
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLEL-------SDEA------E 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~-------~~~~------~ 240 (780)
....++|+|..|+|||||.+.+.+... .+....+.++. .....+.+.+......... .+.+ .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345689999999999999999987543 33334444443 2334455555444332211 1111 1
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
....-.+.++++ .++++|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122334556664 36899999999844
No 448
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.66 E-value=1.4 Score=45.41 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 163 TLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 163 ~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.-+.+...+.++. .....++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 3456666666655 45777999999999999999887654
No 449
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.66 E-value=0.11 Score=54.44 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=37.3
Q ss_pred cccccchHHHHHH---HHHHhhcCC--eEEEEEEeCCCChHHHHHHHHHHHhhccCCC
Q 003996 154 YEAFESRVSTLKS---IQNALTDAN--VSIIGVYGMGGIGKTTLVKEFVRQASENKLF 206 (780)
Q Consensus 154 ~~~~~gR~~~~~~---l~~~L~~~~--~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F 206 (780)
..+++|..+..+. +++++.+.+ .+.+.+.|++|.|||+||..+.+.....-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4588998766554 566666554 5889999999999999999999998765333
No 450
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.66 E-value=0.029 Score=55.31 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=61.2
Q ss_pred ccccccccccccccccccccccCCCCccccccCccEEeeccC--ccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGC--DKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c--~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
.+.+|+.|++.+..++.+.. +..|++|++|.++.. +--..++ .....+|+|++|++++ +.++.+-.
T Consensus 41 ~~~~le~ls~~n~gltt~~~-------~P~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~-Nki~~lst-- 108 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN-------FPKLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSG-NKIKDLST-- 108 (260)
T ss_pred cccchhhhhhhccceeeccc-------CCCcchhhhhcccCCcccccccce--ehhhhCCceeEEeecC-Cccccccc--
Confidence 35566666665544433211 345678888888776 2222221 2334558888888875 33332211
Q ss_pred cccccccccccCcccEEeccCCCCcc--ccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 702 RTDQVTAYFVFPRVTTLKLDGLPELR--CLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l~~~~~L~--~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
...+..+++|..|.+.+|+-.. .-... ...-+|+|..|+-+.+..=+..+
T Consensus 109 ----l~pl~~l~nL~~Ldl~n~~~~~l~dyre~-vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 109 ----LRPLKELENLKSLDLFNCSVTNLDDYREK-VFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred ----cchhhhhcchhhhhcccCCccccccHHHH-HHHHhhhhccccccccCCccccc
Confidence 1244566777777777775333 11111 11346777777766666555444
No 451
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.66 E-value=0.059 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHhh
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987554
No 452
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.64 E-value=0.3 Score=45.94 Aligned_cols=116 Identities=22% Similarity=0.156 Sum_probs=62.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEE---EEEeCCCCCHHHHHHHHH---HHhCCC--C---CchhHHH--
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVV---FSEVSQTPDIKKIQGEIA---EKLGLE--L---SDEAEYR-- 242 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~i~~~i~---~~l~~~--~---~~~~~~~-- 242 (780)
...|-|++..|.||||.|.-+.-+..... + .++ |+--.........++.+. .+.+.. + +...+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-K-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 46788899999999999999887766432 2 222 333232334444443320 001111 1 1111112
Q ss_pred --HHHHHHHHHhcCCeEEEEEeCCCCc-----cCccccCCCCCCCCCCcEEEEEeCCh
Q 003996 243 --RASRLYERLKNENKILVILDNIWKH-----LDLDTVGIPFGNDHEGCRLLLTARDI 293 (780)
Q Consensus 243 --~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IlvTTR~~ 293 (780)
......+.+..++-=+||||.+-.. -+.+++...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2333444455555569999998533 22334433343344566899999974
No 453
>PRK14530 adenylate kinase; Provisional
Probab=93.63 E-value=0.058 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998764
No 454
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.62 E-value=1.2 Score=50.20 Aligned_cols=230 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcchhhhhHHHHHHHHHHHHHHHHHhhccC-cccccccCCccccc
Q 003996 69 EKVEKWLVSANGIIDRAAKFVEHEESTNKRCLKGLCPNLKTRYQLSKKAETEMKALLELGEEVKK-FDIVSHRTIPEEIW 147 (780)
Q Consensus 69 ~~v~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~~~~~~~r~~i~~~i~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~~ 147 (780)
.+...--++.+......+++++.+...+... +...+|.+...+|+............... +.+...........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~-----k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~v 321 (530)
T COG0488 247 RQEAAAYEKQQKELAKEQEWIRRGKAAASKA-----KKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLV 321 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----HHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCee
Q ss_pred cccCCCcccccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhcc------CCCCEEEEEEeCCCCC
Q 003996 148 LKSNKGYEAFESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASEN------KLFDRVVFSEVSQTPD 219 (780)
Q Consensus 148 ~~~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~------~~F~~~~wv~vs~~~~ 219 (780)
-..-.....+.+. ..|.+-+. -.....|+|+|+.|+|||||.+.+....... ..--.+.|+.=.....
T Consensus 322 l~~~~~~~~y~~~----~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l 397 (530)
T COG0488 322 LEFENVSKGYDGG----RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL 397 (530)
T ss_pred EEEeccccccCCC----ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc
Q ss_pred H-----------------HHHHHHHHHHhCCCCCc-------hhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCcccc--
Q 003996 220 I-----------------KKIQGEIAEKLGLELSD-------EAEYRRASRLYERLKNENKILVILDNIWKHLDLDTV-- 273 (780)
Q Consensus 220 ~-----------------~~i~~~i~~~l~~~~~~-------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l-- 273 (780)
. ..-.+..+.+++.+.+. -+-.+...-....+.-.++-+||||.--+.-+.+.+
T Consensus 398 ~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~a 477 (530)
T COG0488 398 DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477 (530)
T ss_pred CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHH
Q ss_pred CCCCCCCCCCcEEEEEeCChHHHhhcCCCceEecCC
Q 003996 274 GIPFGNDHEGCRLLLTARDINVLLSMGSKDNFLIGN 309 (780)
Q Consensus 274 ~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~ 309 (780)
.......-.|+ ||+.|.++....... ..++.+.+
T Consensus 478 Le~aL~~f~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 478 LEEALLDFEGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHHhCCCe-EEEEeCCHHHHHhhc-ceEEEEcC
No 455
>PRK14529 adenylate kinase; Provisional
Probab=93.58 E-value=0.27 Score=48.65 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=45.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhccCCCCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASENKLFDR--VVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
|.|.|++|+||||+|+.++...... +.+. .+.-.+..........++++.+-.. .++.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7789999999999999999887643 2221 1111222233344444455443221 1222233445555543223
Q ss_pred EEEEEeCCC
Q 003996 257 ILVILDNIW 265 (780)
Q Consensus 257 ~LlVlDdv~ 265 (780)
-=+|||..-
T Consensus 78 ~g~iLDGfP 86 (223)
T PRK14529 78 NGWLLDGFP 86 (223)
T ss_pred CcEEEeCCC
Confidence 458888874
No 456
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.58 E-value=0.19 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998763
No 457
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.55 E-value=0.14 Score=47.55 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=28.1
Q ss_pred hhcCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 171 LTDANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 171 L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
+..++..+|.+.|.+|.||||+|..+.+.....
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 334567899999999999999999999988754
No 458
>PRK13949 shikimate kinase; Provisional
Probab=93.55 E-value=0.058 Score=51.16 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
-|.|+|+.|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998875
No 459
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.54 E-value=0.19 Score=48.93 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 168 QNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 168 ~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
+..+..++-+++.|.|++|+||||+++.+.......
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 333434555788899999999999999998877764
No 460
>PRK14527 adenylate kinase; Provisional
Probab=93.54 E-value=0.066 Score=52.03 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+|.|+|++|+||||+|+.+++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999887753
No 461
>PRK13947 shikimate kinase; Provisional
Probab=93.53 E-value=0.058 Score=51.36 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=22.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988753
No 462
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.52 E-value=0.069 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 78999999999999999999843
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.52 E-value=0.052 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
++++|+|+.|+|||||++.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 464
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.43 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
+-|..+|++|.|||-||+.|+......
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 578899999999999999999988744
No 465
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.48 E-value=0.098 Score=49.46 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 158 ESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 158 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|....++++.+.+. ......|.|+|..|+||+.+|+.+++...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 566666777766654 12235566999999999999999998543
No 466
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.48 E-value=0.28 Score=49.76 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=51.7
Q ss_pred eEEEEEEeCCCChHHHHH-HHHHHHhhccCCCCEE-EEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhHH---
Q 003996 176 VSIIGVYGMGGIGKTTLV-KEFVRQASENKLFDRV-VFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAEY--- 241 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~~--- 241 (780)
-+-++|.|.+|+|||+|| ..+.+.. .-+.+ +++.+++.. ...++.+++...-... .++....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 467899999999999996 5565542 13444 667777654 4566666665432211 1111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 003996 242 --RRASRLYERLKN-ENKILVILDNIWKH 267 (780)
Q Consensus 242 --~~~~~l~~~l~~-~k~~LlVlDdv~~~ 267 (780)
...-.+.+++.. ++..||++||+-..
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 112334444443 58899999998443
No 467
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.48 E-value=0.14 Score=49.58 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=31.1
Q ss_pred ccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
..++|.+..+..+.-+... ..-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 4677888777777655543 36789999999999999999875
No 468
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.48 E-value=0.28 Score=49.94 Aligned_cols=87 Identities=23% Similarity=0.372 Sum_probs=51.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh-ccCCC-------CEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCchh---------
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS-ENKLF-------DRVVFSEVSQT-PDIKKIQGEIAEKLGLELSDEA--------- 239 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~-~~~~F-------~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~~--------- 239 (780)
++.|+|.||+|||||+-..+=... .++.| ..+++|+.... .++-.-++.+..+++++..+..
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 445679999999999887654332 22233 35777777543 3455666777888877532210
Q ss_pred --------HHHHHHHHHHHHhcCCeEEEEEeCC
Q 003996 240 --------EYRRASRLYERLKNENKILVILDNI 264 (780)
Q Consensus 240 --------~~~~~~~l~~~l~~~k~~LlVlDdv 264 (780)
......+....+.+.++-++|+|-.
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcch
Confidence 0112233333344456678888875
No 469
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.48 E-value=0.32 Score=50.98 Aligned_cols=87 Identities=17% Similarity=0.333 Sum_probs=51.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS-QTPDIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
....++|+|..|+|||||.+.+..... -+..+...++ ...++.++..+....-+.. .++...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998887543 2333444444 3345666666655543321 111111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 003996 241 YRRASRLYERLK-NENKILVILDNIW 265 (780)
Q Consensus 241 ~~~~~~l~~~l~-~~k~~LlVlDdv~ 265 (780)
....-.+.+++. .++.+|+++||+-
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccch
Confidence 112223444443 3688999999974
No 470
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.47 E-value=0.26 Score=53.63 Aligned_cols=89 Identities=16% Similarity=0.303 Sum_probs=51.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC--------CCchhHH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE--------LSDEAEY----- 241 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~~~~----- 241 (780)
....++|.|..|+|||||++.+...... ...++...-.....+.++.++.+..-+.. .++....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 3467999999999999999988865432 22233222233444555666554433221 1111111
Q ss_pred HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 003996 242 RRASRLYERLKN-ENKILVILDNIWK 266 (780)
Q Consensus 242 ~~~~~l~~~l~~-~k~~LlVlDdv~~ 266 (780)
...-.+.+++.. +++.||++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 123345555543 5789999999843
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.46 E-value=0.33 Score=57.61 Aligned_cols=179 Identities=18% Similarity=0.241 Sum_probs=90.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhc--c------------CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASE--N------------KLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEA 239 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~--~------------~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 239 (780)
.+.+++.|+|+.+.||||+.+.+.-..-- - ..|+ .++..++...++..-+.....
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~---------- 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSG---------- 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHH----------
Confidence 34578999999999999999998643210 0 1122 223333333222221111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccCcc---cc----CCCCCCCCCCcEEEEEeCChHHHhhcCCCceEecCC--C
Q 003996 240 EYRRASRLYERLKNENKILVILDNIWKHLDLD---TV----GIPFGNDHEGCRLLLTARDINVLLSMGSKDNFLIGN--L 310 (780)
Q Consensus 240 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---~l----~~~l~~~~~gs~IlvTTR~~~v~~~~~~~~~~~l~~--L 310 (780)
.......+...+ .++-|+++|..-.--+.. .+ ...+ ...|+.+|+||..............+.-.. +
T Consensus 394 ~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 394 HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 111222333333 357899999986542211 12 1122 124788999999877765332221111000 1
Q ss_pred CHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 003996 311 NEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQ 373 (780)
Q Consensus 311 ~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 373 (780)
+. +......+...+... ...|-.|++.+ |+|-.+..-|.-+.+........++..+.
T Consensus 470 d~-~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 470 DE-ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred ec-CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 11 110000000011111 24566777776 78888888887777555556666666543
No 472
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.45 E-value=0.076 Score=49.30 Aligned_cols=28 Identities=36% Similarity=0.668 Sum_probs=25.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
.++++|+|+.|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4789999999999999999999998875
No 473
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.38 E-value=0.086 Score=52.29 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
...++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999877
No 474
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.38 E-value=0.18 Score=53.64 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 157 FESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 157 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
++|++.....+..++..+ +.+.+.|++|+|||+||+.++...... .++|.........++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCch
Confidence 678887777777666544 457899999999999999999987632 3556666666666555443
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.37 E-value=0.068 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|+|+|++|+|||||++.+.....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346899999999999999999998653
No 476
>PRK13975 thymidylate kinase; Provisional
Probab=93.37 E-value=0.074 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 477
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.36 E-value=0.28 Score=49.53 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=55.0
Q ss_pred ccchHHHHHHHHHHhh----c---CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 157 FESRVSTLKSIQNALT----D---ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 157 ~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
++|..-..+.|+..+. + .+.=+++.+|.+|+||...++.+++.......-. ........
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fva 149 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFVA 149 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhhh
Confidence 4455444555555443 2 3456999999999999999999998765421000 00111111
Q ss_pred HhCCCCCch---hHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 230 KLGLELSDE---AEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 230 ~l~~~~~~~---~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
.+..+.+.. =..+...++......-+|-|+|||+++..
T Consensus 150 t~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 150 TLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 111111110 11233445555555567899999999765
No 478
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.35 E-value=0.69 Score=46.76 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=36.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
..++.|.|.+|+|||+++.++..+...+. =..++|++... +..++...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 46899999999999999999887765431 23567766654 55566666653
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.35 E-value=0.32 Score=54.67 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=51.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc-----------------
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD----------------- 237 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------------- 237 (780)
..+++.|.|++|+||||||.++...-..+ .=...+||+..+ +..++.+. +..++.....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhc
Confidence 35799999999999999999986653222 014678888754 34444433 3444432110
Q ss_pred -------hhHHHHHHHHHHHHhcCCeEEEEEeCC
Q 003996 238 -------EAEYRRASRLYERLKNENKILVILDNI 264 (780)
Q Consensus 238 -------~~~~~~~~~l~~~l~~~k~~LlVlDdv 264 (780)
.+.......+...+...++-.+|+|-+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 112234455556665556667888844
No 480
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.34 E-value=0.057 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|+|+.|+|||||++.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998653
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.32 E-value=0.11 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 164 LKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 164 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+++|.+++.+ ++++++|..|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666666643 789999999999999999988754
No 482
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.32 E-value=0.08 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.32 E-value=0.4 Score=48.96 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=50.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
+..+++++|.+|+||||++..+......+ -..+.+++..... ....-++..++.++.+..............+.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998776532 1345666654332 22223344455555443221112222333444432
Q ss_pred -CCeEEEEEeCCC
Q 003996 254 -ENKILVILDNIW 265 (780)
Q Consensus 254 -~k~~LlVlDdv~ 265 (780)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 234678888874
No 484
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=0.016 Score=57.35 Aligned_cols=104 Identities=14% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHh
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELT 604 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~ 604 (780)
++.+++-|.+-++... .-++..+|+.|.||.||-|.|++|..
T Consensus 17 dl~~vkKLNcwg~~L~-----DIsic~kMp~lEVLsLSvNkIssL~p--------------------------------- 58 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-----DISICEKMPLLEVLSLSVNKISSLAP--------------------------------- 58 (388)
T ss_pred HHHHhhhhcccCCCcc-----HHHHHHhcccceeEEeeccccccchh---------------------------------
Q ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCcccc---chhhHhhcc
Q 003996 605 ASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIF---SASTIQSLE 681 (780)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~---~~~~l~~L~ 681 (780)
+..+++|+.|.|..|.|+.+..- ..+..+++|+.|.|..++-+..-+ ....+..||
T Consensus 59 -----------------l~rCtrLkElYLRkN~I~sldEL----~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 59 -----------------LQRCTRLKELYLRKNCIESLDEL----EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred -----------------HHHHHHHHHHHHHhcccccHHHH----HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Q ss_pred CCcEEE
Q 003996 682 QLQHLE 687 (780)
Q Consensus 682 ~L~~L~ 687 (780)
||+.|+
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
No 485
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.30 E-value=0.075 Score=53.40 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=23.3
Q ss_pred EEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC
Q 003996 181 VYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS 215 (780)
Q Consensus 181 I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 215 (780)
|+||+|+||||+++.+.+.....+ ..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999887652 345555544
No 486
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.29 E-value=0.072 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHhh
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 487
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.28 E-value=0.34 Score=53.38 Aligned_cols=90 Identities=26% Similarity=0.275 Sum_probs=58.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc---CCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH---
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN---KLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE--- 240 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~--- 240 (780)
-+-++|.|..|+|||||+..+.+..... ..+ .++++.+++.. .+.++++++...=... .+....
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 4678899999999999999998876532 111 56777777654 5667777766542221 111111
Q ss_pred --HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 003996 241 --YRRASRLYERLK--NENKILVILDNIWK 266 (780)
Q Consensus 241 --~~~~~~l~~~l~--~~k~~LlVlDdv~~ 266 (780)
.-..-.+.++++ .++++||++||+-.
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 122346777776 46899999999843
No 488
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.28 E-value=0.067 Score=52.38 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|+|.+|+|||||++.+.--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999986544
No 489
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.27 E-value=0.34 Score=53.80 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=49.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEE-EEEEeCCCCC-HHHHHHHHHHHh-CCCCCchh-----HHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRV-VFSEVSQTPD-IKKIQGEIAEKL-GLELSDEA-----EYRRASR 246 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~i~~~i~~~l-~~~~~~~~-----~~~~~~~ 246 (780)
.-.-..|+|++|+|||||++.+.+..... +-+.. +.+-|++... +.++.+.+-..+ ....+... .....-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999876542 23443 3445555433 333322220000 00111111 1122334
Q ss_pred HHHHHh-cCCeEEEEEeCCC
Q 003996 247 LYERLK-NENKILVILDNIW 265 (780)
Q Consensus 247 l~~~l~-~~k~~LlVlDdv~ 265 (780)
+.+++. .++.+||++|++-
T Consensus 494 ~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHcCCCEEEEEeCch
Confidence 445553 3688999999984
No 490
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.27 E-value=0.23 Score=54.26 Aligned_cols=89 Identities=17% Similarity=0.291 Sum_probs=52.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC--------CCchhH-----H
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE--------LSDEAE-----Y 241 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~~~-----~ 241 (780)
....++|.|..|+|||||++.+....... ..+++..-.....+.++.+.+...-+.. .+.... .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999998654321 2344433334445566656655442221 111111 1
Q ss_pred HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 003996 242 RRASRLYERLK-NENKILVILDNIWK 266 (780)
Q Consensus 242 ~~~~~l~~~l~-~~k~~LlVlDdv~~ 266 (780)
-..-.+.+++. .++++|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12234555554 36899999999843
No 491
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.27 E-value=0.076 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFV 197 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~ 197 (780)
...++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 492
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.27 E-value=0.59 Score=51.47 Aligned_cols=92 Identities=23% Similarity=0.367 Sum_probs=59.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC--------------Cchh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLEL--------------SDEA 239 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~--------------~~~~ 239 (780)
.-+-++|.|.+|+|||||+.++....... +=+.++++-+++.. .+.++..++...-.... .+.+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 34678999999999999999988874321 12678888887754 45667776665211110 0111
Q ss_pred H------HHHHHHHHHHHhc-C-CeEEEEEeCCCCc
Q 003996 240 E------YRRASRLYERLKN-E-NKILVILDNIWKH 267 (780)
Q Consensus 240 ~------~~~~~~l~~~l~~-~-k~~LlVlDdv~~~ 267 (780)
. .-..-.+.++++. + +++||++||+-..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 1223457777754 3 4899999998543
No 493
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.25 Score=55.45 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=49.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCe
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENK 256 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 256 (780)
.-|.++|++|.|||-||..++.....+ +|+|... +++. +.+|. .++....++.+-+.-++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~---KyIGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLS---KYIGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHH---HHhcc------cHHHHHHHHHHhhccCC
Confidence 458899999999999999999876643 4666553 2222 22221 12345566666667799
Q ss_pred EEEEEeCCCCc
Q 003996 257 ILVILDNIWKH 267 (780)
Q Consensus 257 ~LlVlDdv~~~ 267 (780)
++|.||.+++.
T Consensus 762 CiLFFDEfdSi 772 (952)
T KOG0735|consen 762 CILFFDEFDSI 772 (952)
T ss_pred eEEEecccccc
Confidence 99999998765
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.24 E-value=0.057 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~ 200 (780)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 495
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.24 E-value=0.072 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=25.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEE
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVF 211 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~w 211 (780)
|++|+|+.|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999987654 3443333
No 496
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.22 E-value=0.073 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.9
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~ 199 (780)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 497
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.22 E-value=0.075 Score=51.23 Aligned_cols=26 Identities=15% Similarity=0.393 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.21 E-value=0.13 Score=50.30 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
....+|.|+|++|+||||+|+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999987643
No 499
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.33 Score=52.92 Aligned_cols=89 Identities=16% Similarity=0.280 Sum_probs=48.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC-------CCc------hhH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLE-------LSD------EAE 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~-------~~~------~~~ 240 (780)
....++|.|..|+|||||++.+..... .+..+...++. ...+.++..+.+.+-+.. ..+ ...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 457899999999999999998877543 23332333332 223444443444333221 111 111
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 003996 241 YRRASRLYERLK-NENKILVILDNIWKH 267 (780)
Q Consensus 241 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 267 (780)
...+..+.+++. .++++||++||+-..
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 122233333332 258899999998443
No 500
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.18 E-value=0.3 Score=53.17 Aligned_cols=88 Identities=14% Similarity=0.257 Sum_probs=52.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCC--------CCCchhH-----
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGL--------ELSDEAE----- 240 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~--------~~~~~~~----- 240 (780)
....++|.|..|+|||||++.+.+... .+..++..++.. ..+.+.+.+....=.. ..++...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 456889999999999999998886543 455566666553 3444555554321110 0111111
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 003996 241 YRRASRLYERLKN-ENKILVILDNIWK 266 (780)
Q Consensus 241 ~~~~~~l~~~l~~-~k~~LlVlDdv~~ 266 (780)
....-.+.+++.. ++++||++||+-.
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 1123345555543 6789999999843
Done!