Query 003996
Match_columns 780
No_of_seqs 418 out of 3799
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.7E-47 1.6E-51 431.5 19.6 307 158-485 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.5E-38 1.5E-42 360.4 16.9 281 156-477 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4E-37 1.4E-41 387.2 24.9 312 150-484 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.9E-34 2.4E-38 328.2 25.2 307 151-482 120-450 (591)
5 2qen_A Walker-type ATPase; unk 99.7 2.5E-15 8.6E-20 161.0 21.0 289 152-478 9-349 (350)
6 4fcg_A Uncharacterized protein 99.7 5.5E-16 1.9E-20 164.2 14.5 209 505-757 81-295 (328)
7 2fna_A Conserved hypothetical 99.6 1.5E-14 5.3E-19 155.2 20.8 288 153-477 11-356 (357)
8 1w5s_A Origin recognition comp 99.6 8E-14 2.7E-18 152.9 21.2 300 155-473 22-387 (412)
9 4fcg_A Uncharacterized protein 99.5 5.7E-14 2E-18 148.7 14.0 199 525-775 79-294 (328)
10 3qfl_A MLA10; coiled-coil, (CC 99.4 1.4E-12 4.9E-17 113.2 11.2 79 16-95 2-81 (115)
11 2o6q_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 131.2 13.8 195 507-750 18-216 (270)
12 2xwt_C Thyrotropin receptor; s 99.3 2.2E-12 7.7E-17 129.8 10.9 79 503-583 29-110 (239)
13 3zyi_A Leucine-rich repeat-con 99.3 4.5E-12 1.5E-16 140.6 13.5 231 493-750 64-301 (452)
14 2qby_A CDC6 homolog 1, cell di 99.3 3.7E-11 1.3E-15 130.2 20.3 286 154-460 19-347 (386)
15 2id5_A Lingo-1, leucine rich r 99.3 4.3E-12 1.5E-16 141.9 13.0 189 494-729 22-216 (477)
16 3zyi_A Leucine-rich repeat-con 99.3 4.8E-12 1.6E-16 140.4 13.1 197 504-724 98-301 (452)
17 3v47_A TOLL-like receptor 5B a 99.3 1.3E-11 4.4E-16 137.2 16.2 89 491-583 18-108 (455)
18 3zyj_A Leucine-rich repeat-con 99.3 7.4E-12 2.5E-16 138.4 13.8 230 494-750 54-290 (440)
19 1ozn_A Reticulon 4 receptor; N 99.3 4.8E-12 1.6E-16 131.1 11.4 200 503-750 30-236 (285)
20 2qby_B CDC6 homolog 3, cell di 99.3 3E-11 1E-15 131.0 18.0 283 155-460 20-338 (384)
21 1h6u_A Internalin H; cell adhe 99.3 6.6E-12 2.2E-16 131.6 11.9 194 503-756 39-233 (308)
22 3zyj_A Leucine-rich repeat-con 99.3 6.2E-12 2.1E-16 139.0 12.3 197 504-724 87-290 (440)
23 1fnn_A CDC6P, cell division co 99.3 2.5E-10 8.5E-15 123.8 24.3 284 155-460 17-350 (389)
24 2z62_A TOLL-like receptor 4, v 99.3 1.1E-11 3.8E-16 127.7 12.4 205 503-755 26-246 (276)
25 1ozn_A Reticulon 4 receptor; N 99.3 1.2E-11 4.1E-16 128.1 12.6 199 508-756 14-217 (285)
26 2z80_A TOLL-like receptor 2, v 99.3 1.6E-11 5.5E-16 131.4 13.5 231 504-751 51-313 (353)
27 4fmz_A Internalin; leucine ric 99.3 1.7E-11 5.7E-16 131.0 13.1 111 622-756 217-327 (347)
28 2z66_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 130.0 11.3 233 495-750 19-259 (306)
29 2v1u_A Cell division control p 99.3 1.6E-10 5.6E-15 125.2 21.1 281 155-460 19-350 (387)
30 3oja_B Anopheles plasmodium-re 99.3 1.6E-11 5.4E-16 141.2 13.6 92 650-756 249-340 (597)
31 1xku_A Decorin; proteoglycan, 99.3 2.7E-11 9.4E-16 128.3 14.4 223 504-756 51-279 (330)
32 3oja_B Anopheles plasmodium-re 99.3 5.6E-12 1.9E-16 145.0 9.6 109 620-750 248-356 (597)
33 4fmz_A Internalin; leucine ric 99.3 5.5E-11 1.9E-15 126.9 16.6 210 503-756 64-281 (347)
34 3o6n_A APL1; leucine-rich repe 99.3 6.9E-12 2.4E-16 136.3 9.6 106 623-750 245-350 (390)
35 1p9a_G Platelet glycoprotein I 99.3 2.4E-11 8.1E-16 126.0 13.0 196 505-750 10-206 (290)
36 3o6n_A APL1; leucine-rich repe 99.3 2.1E-11 7.3E-16 132.4 13.1 92 650-756 243-334 (390)
37 2o6q_A Variable lymphocyte rec 99.2 2.3E-11 7.7E-16 124.9 11.6 176 503-724 35-216 (270)
38 2id5_A Lingo-1, leucine rich r 99.2 1.8E-11 6.1E-16 136.9 11.4 233 504-756 55-312 (477)
39 1o6v_A Internalin A; bacterial 99.2 8.6E-11 2.9E-15 130.8 16.6 215 502-750 65-298 (466)
40 1ogq_A PGIP-2, polygalacturona 99.2 6.9E-12 2.3E-16 131.8 7.0 225 503-755 74-307 (313)
41 1njg_A DNA polymerase III subu 99.2 8.5E-11 2.9E-15 118.4 14.6 198 152-357 20-231 (250)
42 1ogq_A PGIP-2, polygalacturona 99.2 2.1E-11 7.2E-16 128.1 9.9 225 505-757 50-286 (313)
43 2xwt_C Thyrotropin receptor; s 99.2 6.6E-11 2.2E-15 119.0 12.3 192 514-757 20-222 (239)
44 3rfs_A Internalin B, repeat mo 99.2 1.5E-10 5E-15 119.0 15.0 175 502-724 38-216 (272)
45 2z66_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 126.0 10.5 216 509-750 11-234 (306)
46 2chg_A Replication factor C sm 99.2 1.5E-10 5.3E-15 114.7 14.6 190 152-357 14-207 (226)
47 3m19_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 118.3 13.8 172 506-724 15-190 (251)
48 2z80_A TOLL-like receptor 2, v 99.2 5.3E-11 1.8E-15 127.4 11.9 220 510-757 36-294 (353)
49 1h6t_A Internalin B; cell adhe 99.2 8.9E-11 3.1E-15 121.8 13.0 166 503-723 44-210 (291)
50 3rgz_A Protein brassinosteroid 99.2 3.2E-11 1.1E-15 142.9 10.3 64 621-691 413-476 (768)
51 1xku_A Decorin; proteoglycan, 99.2 1.2E-10 4.1E-15 123.4 13.1 222 506-757 32-257 (330)
52 2ft3_A Biglycan; proteoglycan, 99.2 2.2E-10 7.5E-15 121.4 15.1 108 626-750 193-305 (332)
53 1h6u_A Internalin H; cell adhe 99.2 5.2E-11 1.8E-15 124.7 9.5 173 524-756 38-211 (308)
54 1m9s_A Internalin B; cell inva 99.2 9.6E-11 3.3E-15 133.6 12.4 167 503-724 41-208 (605)
55 3oja_A Leucine-rich immune mol 99.2 3.1E-11 1.1E-15 134.8 8.1 210 505-752 34-250 (487)
56 3t6q_A CD180 antigen; protein- 99.1 1.3E-10 4.3E-15 134.2 13.0 119 621-753 395-513 (606)
57 1o6v_A Internalin A; bacterial 99.1 2.4E-10 8.1E-15 127.2 14.7 214 503-750 44-276 (466)
58 3v47_A TOLL-like receptor 5B a 99.1 1.1E-10 3.9E-15 129.4 12.0 113 621-750 294-406 (455)
59 2ft3_A Biglycan; proteoglycan, 99.1 1.4E-10 4.8E-15 122.9 12.1 223 504-757 53-281 (332)
60 4ecn_A Leucine-rich repeat pro 99.1 1.8E-10 6.2E-15 136.1 13.7 74 505-583 515-600 (876)
61 3rfs_A Internalin B, repeat mo 99.1 1.6E-10 5.5E-15 118.6 11.4 179 498-729 56-238 (272)
62 3bz5_A Internalin-J, INLJ; leu 99.1 3.5E-10 1.2E-14 125.1 14.5 70 504-583 63-132 (457)
63 3o53_A Protein LRIM1, AGAP0063 99.1 5.4E-11 1.9E-15 125.2 7.5 61 505-570 34-96 (317)
64 3j0a_A TOLL-like receptor 5; m 99.1 4.9E-10 1.7E-14 134.2 16.4 91 489-583 10-102 (844)
65 4eco_A Uncharacterized protein 99.1 1.3E-10 4.4E-15 134.5 10.9 52 527-583 305-358 (636)
66 2z62_A TOLL-like receptor 4, v 99.1 3E-10 1E-14 116.9 12.5 196 515-757 17-217 (276)
67 4ay9_X Follicle-stimulating ho 99.1 2.9E-10 9.9E-15 121.4 12.5 202 505-756 30-240 (350)
68 3o53_A Protein LRIM1, AGAP0063 99.1 1.2E-10 4.2E-15 122.4 9.4 195 525-756 32-230 (317)
69 3oja_A Leucine-rich immune mol 99.1 1.2E-10 4E-15 130.2 9.5 196 525-757 32-231 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.1 4.6E-10 1.6E-14 128.2 14.5 58 505-571 61-118 (622)
71 3vq2_A TLR4, TOLL-like recepto 99.1 2.3E-10 7.7E-15 132.1 12.1 114 621-751 443-557 (606)
72 3vq2_A TLR4, TOLL-like recepto 99.1 3.3E-10 1.1E-14 130.7 13.5 118 621-757 419-538 (606)
73 2ast_B S-phase kinase-associat 99.1 2.6E-11 8.9E-16 128.8 3.8 76 505-583 70-147 (336)
74 4ezg_A Putative uncharacterize 99.1 3.2E-10 1.1E-14 110.3 11.2 107 624-750 86-192 (197)
75 3t6q_A CD180 antigen; protein- 99.1 4.6E-10 1.6E-14 129.4 14.0 63 622-692 274-336 (606)
76 4ay9_X Follicle-stimulating ho 99.1 5.3E-10 1.8E-14 119.4 13.3 100 627-747 155-254 (350)
77 3bz5_A Internalin-J, INLJ; leu 99.1 2.2E-10 7.6E-15 126.7 10.3 116 622-756 208-324 (457)
78 3rgz_A Protein brassinosteroid 99.1 3.2E-10 1.1E-14 134.4 12.2 116 622-755 628-743 (768)
79 1wwl_A Monocyte differentiatio 99.1 9E-11 3.1E-15 123.2 6.6 201 504-750 94-307 (312)
80 1ziw_A TOLL-like receptor 3; i 99.1 1.1E-09 3.7E-14 128.2 15.6 86 494-583 15-102 (680)
81 2z63_A TOLL-like receptor 4, v 99.1 3.5E-10 1.2E-14 129.4 11.0 111 622-750 417-529 (570)
82 4ezg_A Putative uncharacterize 99.0 6.3E-10 2.1E-14 108.1 10.9 151 503-724 42-192 (197)
83 1wwl_A Monocyte differentiatio 99.0 1.9E-10 6.6E-15 120.6 6.6 184 525-756 93-290 (312)
84 2z63_A TOLL-like receptor 4, v 99.0 7.2E-10 2.4E-14 126.8 11.5 119 621-756 391-510 (570)
85 4ecn_A Leucine-rich repeat pro 99.0 1.1E-09 3.6E-14 129.5 13.2 204 503-756 446-689 (876)
86 4glp_A Monocyte differentiatio 99.0 2.4E-10 8.1E-15 119.8 6.7 76 506-583 92-174 (310)
87 3m19_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 110.8 11.4 151 504-692 34-190 (251)
88 4eco_A Uncharacterized protein 99.0 1E-09 3.5E-14 126.9 12.1 107 624-752 486-600 (636)
89 1ziw_A TOLL-like receptor 3; i 99.0 1.3E-09 4.5E-14 127.5 13.1 225 506-750 382-620 (680)
90 4glp_A Monocyte differentiatio 99.0 8E-10 2.7E-14 115.8 9.6 207 506-756 65-288 (310)
91 3g06_A SSPH2 (leucine-rich rep 99.0 2.9E-09 1E-13 121.5 15.0 211 489-750 67-295 (622)
92 1p9a_G Platelet glycoprotein I 99.0 8.9E-10 3E-14 114.1 9.6 171 504-724 30-206 (290)
93 2z81_A CD282 antigen, TOLL-lik 99.0 3.9E-10 1.3E-14 128.3 7.3 202 504-750 25-234 (549)
94 3e6j_A Variable lymphocyte rec 99.0 2.3E-09 7.9E-14 106.8 11.9 149 508-724 22-170 (229)
95 1m9s_A Internalin B; cell inva 99.0 9.4E-10 3.2E-14 125.4 9.4 186 512-757 28-214 (605)
96 3j0a_A TOLL-like receptor 5; m 98.9 2E-09 6.8E-14 128.9 12.3 198 508-749 7-214 (844)
97 1sxj_B Activator 1 37 kDa subu 98.9 3.1E-09 1.1E-13 111.9 12.3 191 151-356 17-212 (323)
98 2o6s_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 103.1 12.2 172 509-756 11-182 (208)
99 2v9t_B SLIT homolog 2 protein 98.9 2.3E-09 7.7E-14 106.1 10.2 150 508-724 14-163 (220)
100 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 3.4E-09 1.2E-13 120.9 13.0 86 491-583 39-126 (562)
101 2z7x_B TOLL-like receptor 1, v 98.9 3.7E-09 1.3E-13 119.4 13.1 73 505-583 21-95 (520)
102 2ell_A Acidic leucine-rich nuc 98.9 3.6E-09 1.2E-13 99.8 10.5 118 622-758 45-165 (168)
103 2z81_A CD282 antigen, TOLL-lik 98.9 2.5E-09 8.4E-14 121.7 10.9 203 504-750 49-262 (549)
104 1h6t_A Internalin B; cell adhe 98.9 6.6E-09 2.2E-13 107.6 12.2 149 499-692 62-211 (291)
105 2ast_B S-phase kinase-associat 98.9 3E-10 1E-14 120.5 2.0 197 527-749 70-282 (336)
106 2v70_A SLIT-2, SLIT homolog 2 98.9 4.3E-09 1.5E-13 104.1 10.2 151 508-724 14-164 (220)
107 1xeu_A Internalin C; cellular 98.9 1.4E-09 4.9E-14 110.8 6.7 78 626-724 106-183 (263)
108 2z7x_B TOLL-like receptor 1, v 98.9 7.3E-09 2.5E-13 116.9 12.9 194 505-750 276-479 (520)
109 2o6s_A Variable lymphocyte rec 98.9 3.8E-09 1.3E-13 103.5 9.2 153 504-729 27-181 (208)
110 1hqc_A RUVB; extended AAA-ATPa 98.8 5.4E-09 1.8E-13 110.2 8.9 175 153-357 10-214 (324)
111 2xot_A Amphoterin-induced prot 98.8 6.8E-09 2.3E-13 111.1 9.3 128 505-690 39-172 (361)
112 1xeu_A Internalin C; cellular 98.8 1.4E-08 4.9E-13 103.3 11.0 144 503-692 39-183 (263)
113 1jl5_A Outer protein YOPM; leu 98.8 2.7E-08 9.2E-13 109.8 13.9 194 504-750 90-288 (454)
114 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 2E-08 7E-13 114.4 13.1 108 622-750 399-508 (562)
115 1iqp_A RFCS; clamp loader, ext 98.8 1.1E-08 3.7E-13 107.9 9.6 189 152-358 22-216 (327)
116 2xot_A Amphoterin-induced prot 98.8 7.5E-09 2.6E-13 110.8 8.3 177 508-750 21-200 (361)
117 4g8a_A TOLL-like receptor 4; l 98.8 1.2E-08 4.2E-13 118.0 10.6 78 503-583 50-129 (635)
118 2ell_A Acidic leucine-rich nuc 98.8 6.5E-09 2.2E-13 98.0 6.6 140 526-729 23-162 (168)
119 1a9n_A U2A', U2A'; complex (nu 98.8 5.1E-09 1.7E-13 99.6 5.8 136 524-724 16-151 (176)
120 1jl5_A Outer protein YOPM; leu 98.8 2.9E-08 1E-12 109.5 12.1 185 505-756 71-273 (454)
121 3te6_A Regulatory protein SIR3 98.8 1.1E-07 3.6E-12 98.2 15.3 168 156-324 21-212 (318)
122 3e6j_A Variable lymphocyte rec 98.7 2.9E-08 1E-12 98.7 10.6 131 503-692 38-170 (229)
123 3cvr_A Invasion plasmid antige 98.7 3.1E-08 1E-12 111.7 11.7 181 506-750 60-241 (571)
124 2ca6_A RAN GTPase-activating p 98.7 6.6E-09 2.3E-13 112.5 5.7 121 621-750 182-314 (386)
125 2v9t_B SLIT homolog 2 protein 98.7 5E-08 1.7E-12 96.4 11.3 139 494-691 22-162 (220)
126 2ca6_A RAN GTPase-activating p 98.7 1.1E-09 3.7E-14 118.7 -1.6 210 505-750 32-285 (386)
127 2je0_A Acidic leucine-rich nuc 98.7 9.3E-09 3.2E-13 94.8 4.8 16 551-566 39-54 (149)
128 2v70_A SLIT-2, SLIT homolog 2 98.7 7E-08 2.4E-12 95.3 11.0 130 504-691 31-163 (220)
129 4b8c_D Glucose-repressible alc 98.7 3.3E-08 1.1E-12 115.6 9.6 150 505-692 173-327 (727)
130 2chq_A Replication factor C sm 98.7 1.3E-07 4.4E-12 99.2 13.3 185 153-356 15-206 (319)
131 4g8a_A TOLL-like receptor 4; l 98.7 7.3E-08 2.5E-12 111.4 11.9 113 621-749 464-577 (635)
132 2je0_A Acidic leucine-rich nuc 98.6 4.6E-08 1.6E-12 90.0 7.8 127 504-689 16-148 (149)
133 1jr3_A DNA polymerase III subu 98.6 2.9E-07 9.9E-12 98.9 13.0 181 153-355 14-222 (373)
134 1jbk_A CLPB protein; beta barr 98.6 2.7E-07 9.1E-12 88.7 10.9 153 153-319 20-194 (195)
135 1ds9_A Outer arm dynein; leuci 98.5 2E-08 6.8E-13 97.5 1.8 41 528-570 24-64 (198)
136 1a9n_A U2A', U2A'; complex (nu 98.5 1.2E-07 4E-12 90.1 7.1 134 504-695 18-154 (176)
137 2wfh_A SLIT homolog 2 protein 98.5 3.9E-07 1.3E-11 87.8 10.8 123 508-690 13-135 (193)
138 2o6r_A Variable lymphocyte rec 98.5 3.7E-07 1.2E-11 86.7 10.3 126 508-692 10-135 (177)
139 3cvr_A Invasion plasmid antige 98.5 1.9E-07 6.6E-12 105.2 9.2 154 505-724 80-241 (571)
140 1w8a_A SLIT protein; signaling 98.5 3E-07 1E-11 88.5 9.2 124 508-690 11-135 (192)
141 4b8c_D Glucose-repressible alc 98.5 1E-07 3.5E-12 111.5 6.2 107 525-671 222-331 (727)
142 1dce_A Protein (RAB geranylger 98.5 2.9E-07 9.8E-12 104.2 9.5 61 622-690 482-542 (567)
143 3goz_A Leucine-rich repeat-con 98.5 3.7E-08 1.2E-12 105.5 1.9 61 505-568 22-94 (362)
144 3h4m_A Proteasome-activating n 98.4 1.8E-06 6.3E-11 88.8 14.2 179 153-353 15-230 (285)
145 1d2n_A N-ethylmaleimide-sensit 98.4 6.5E-06 2.2E-10 84.0 17.7 195 156-375 34-264 (272)
146 2wfh_A SLIT homolog 2 protein 98.4 4.6E-07 1.6E-11 87.3 8.4 125 530-724 13-137 (193)
147 3ogk_B Coronatine-insensitive 98.4 2.8E-08 9.5E-13 114.1 -0.4 119 625-753 402-526 (592)
148 3ogk_B Coronatine-insensitive 98.4 8.8E-08 3E-12 109.9 3.7 78 505-583 164-248 (592)
149 1w8a_A SLIT protein; signaling 98.4 3.9E-07 1.3E-11 87.8 7.5 127 530-724 11-137 (192)
150 1z7x_W Ribonuclease inhibitor; 98.4 4.6E-08 1.6E-12 108.5 0.1 60 506-567 29-98 (461)
151 3bos_A Putative DNA replicatio 98.4 2.4E-07 8.1E-12 92.8 5.1 174 154-355 27-218 (242)
152 3pvs_A Replication-associated 98.4 6.6E-06 2.2E-10 89.7 16.7 182 151-357 22-218 (447)
153 2qz4_A Paraplegin; AAA+, SPG7, 98.4 9.2E-06 3.1E-10 82.3 16.8 180 154-353 5-221 (262)
154 1dce_A Protein (RAB geranylger 98.3 1E-06 3.5E-11 99.7 10.2 123 506-687 442-566 (567)
155 2p1m_B Transport inhibitor res 98.3 5.4E-08 1.8E-12 111.7 -1.1 206 504-751 288-518 (594)
156 2o6r_A Variable lymphocyte rec 98.3 1.4E-06 4.7E-11 82.6 8.7 88 622-724 48-135 (177)
157 1sxj_D Activator 1 41 kDa subu 98.3 9.3E-07 3.2E-11 94.1 7.7 197 151-354 33-235 (353)
158 3goz_A Leucine-rich repeat-con 98.2 1.9E-07 6.5E-12 99.9 0.5 204 526-750 21-264 (362)
159 1sxj_E Activator 1 40 kDa subu 98.2 3.2E-06 1.1E-10 90.0 10.0 198 152-356 11-239 (354)
160 3d8b_A Fidgetin-like protein 1 98.2 2.5E-05 8.5E-10 82.9 16.6 182 153-355 82-296 (357)
161 2p1m_B Transport inhibitor res 98.2 1.1E-06 3.8E-11 100.7 6.4 122 623-749 181-324 (594)
162 2z4s_A Chromosomal replication 98.2 9.2E-06 3.1E-10 88.7 13.4 200 154-371 104-331 (440)
163 1sxj_A Activator 1 95 kDa subu 98.2 4.2E-06 1.4E-10 93.6 10.8 190 151-354 35-253 (516)
164 2r9u_A Variable lymphocyte rec 98.2 5.7E-06 2E-10 78.0 10.0 106 508-671 15-120 (174)
165 3pfi_A Holliday junction ATP-d 98.2 3E-05 1E-09 81.8 16.6 175 153-356 27-229 (338)
166 3eie_A Vacuolar protein sortin 98.2 2.6E-05 8.7E-10 81.6 15.3 183 152-355 15-229 (322)
167 3sb4_A Hypothetical leucine ri 98.1 4.8E-06 1.6E-10 87.6 9.5 53 526-582 100-152 (329)
168 3u61_B DNA polymerase accessor 98.1 6.3E-06 2.1E-10 86.5 10.3 182 151-355 22-217 (324)
169 2p65_A Hypothetical protein PF 98.1 8.2E-06 2.8E-10 77.7 9.8 50 153-202 20-69 (187)
170 1xwi_A SKD1 protein; VPS4B, AA 98.1 6.8E-05 2.3E-09 78.3 17.5 183 153-355 10-224 (322)
171 3g39_A Variable lymphocyte rec 98.1 6.3E-06 2.2E-10 77.4 8.7 102 508-666 12-113 (170)
172 3e4g_A ATP synthase subunit S, 98.1 3.5E-06 1.2E-10 78.5 6.4 88 656-753 62-153 (176)
173 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.6E-11 80.7 3.9 91 626-729 61-155 (176)
174 3syl_A Protein CBBX; photosynt 98.1 1.2E-05 4.2E-10 83.6 11.0 153 156-324 32-218 (309)
175 3b9p_A CG5977-PA, isoform A; A 98.1 0.00016 5.6E-09 74.5 19.3 179 153-354 19-233 (297)
176 1sxj_C Activator 1 40 kDa subu 98.1 2E-05 7E-10 83.1 12.5 180 151-349 21-207 (340)
177 1a5t_A Delta prime, HOLB; zinc 98.1 4.3E-05 1.5E-09 80.3 14.8 170 160-353 7-204 (334)
178 3vfd_A Spastin; ATPase, microt 98.0 6.4E-05 2.2E-09 80.8 16.1 183 152-355 112-327 (389)
179 2zan_A Vacuolar protein sortin 98.0 0.00018 6E-09 78.7 19.3 183 153-355 132-346 (444)
180 3uk6_A RUVB-like 2; hexameric 98.0 3.2E-05 1.1E-09 82.6 13.1 197 154-355 43-304 (368)
181 1ds9_A Outer arm dynein; leuci 98.0 2.4E-07 8.3E-12 89.7 -3.5 109 621-750 43-151 (198)
182 1z7x_W Ribonuclease inhibitor; 98.0 6.4E-07 2.2E-11 99.2 -0.7 117 624-753 254-383 (461)
183 4b4t_J 26S protease regulatory 98.0 0.00023 8E-09 75.1 18.7 174 152-347 145-354 (405)
184 2qp9_X Vacuolar protein sortin 98.0 9.5E-05 3.2E-09 78.3 15.8 182 153-355 49-262 (355)
185 3pxg_A Negative regulator of g 98.0 2.9E-05 1E-09 85.5 12.2 150 153-324 178-339 (468)
186 1qvr_A CLPB protein; coiled co 98.0 2E-05 7E-10 93.7 11.0 158 152-323 167-345 (854)
187 2r9u_A Variable lymphocyte rec 97.9 1.3E-05 4.3E-10 75.7 7.3 64 621-691 52-115 (174)
188 1l8q_A Chromosomal replication 97.9 4.5E-05 1.5E-09 79.9 11.9 168 162-350 21-204 (324)
189 3g39_A Variable lymphocyte rec 97.9 1.7E-05 5.7E-10 74.5 7.2 62 622-690 50-111 (170)
190 4b4t_L 26S protease subunit RP 97.9 0.0002 6.8E-09 76.9 16.1 171 153-347 179-387 (437)
191 4b4t_H 26S protease regulatory 97.9 0.00043 1.5E-08 74.1 18.1 172 154-347 208-415 (467)
192 3sb4_A Hypothetical leucine ri 97.8 2.7E-05 9.2E-10 81.8 8.0 100 654-773 225-325 (329)
193 4b4t_I 26S protease regulatory 97.8 0.00055 1.9E-08 72.5 17.3 172 152-347 179-388 (437)
194 4b4t_M 26S protease regulatory 97.8 0.00012 4.1E-09 78.6 12.4 171 152-346 178-386 (434)
195 3cf0_A Transitional endoplasmi 97.8 0.00026 9E-09 73.1 14.4 173 153-349 13-223 (301)
196 4b4t_K 26S protease regulatory 97.7 0.001 3.6E-08 71.2 17.4 171 153-347 170-379 (428)
197 3ec2_A DNA replication protein 97.7 3.2E-05 1.1E-09 73.3 5.1 116 160-292 19-142 (180)
198 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00035 1.2E-08 82.1 14.4 156 153-323 184-362 (758)
199 3pxi_A Negative regulator of g 97.6 0.00023 7.7E-09 83.7 12.2 150 153-324 178-339 (758)
200 2gno_A DNA polymerase III, gam 97.6 0.00013 4.5E-09 75.1 8.8 145 160-323 2-152 (305)
201 2ifg_A High affinity nerve gro 97.6 0.00014 4.6E-09 77.0 9.1 103 510-670 13-117 (347)
202 3n70_A Transport activator; si 97.6 1.4E-05 4.8E-10 72.8 1.2 46 156-201 2-49 (145)
203 3hu3_A Transitional endoplasmi 97.5 0.0014 4.9E-08 72.0 16.3 178 153-354 202-415 (489)
204 3un9_A NLR family member X1; l 97.5 2.3E-05 7.7E-10 83.7 1.6 62 505-568 72-140 (372)
205 1lv7_A FTSH; alpha/beta domain 97.5 0.0028 9.7E-08 63.5 17.0 179 153-353 10-224 (257)
206 1ofh_A ATP-dependent HSL prote 97.5 0.00067 2.3E-08 70.2 12.2 46 156-201 16-75 (310)
207 2w58_A DNAI, primosome compone 97.4 0.00038 1.3E-08 67.1 8.6 114 161-292 35-158 (202)
208 2ifg_A High affinity nerve gro 97.4 0.00021 7.2E-09 75.5 7.1 101 531-691 12-113 (347)
209 2ce7_A Cell division protein F 97.3 0.0021 7.1E-08 70.1 14.6 198 154-373 15-257 (476)
210 4fcw_A Chaperone protein CLPB; 97.3 0.00023 7.8E-09 73.9 6.9 105 156-267 18-131 (311)
211 3un9_A NLR family member X1; l 97.3 2.9E-05 1E-09 82.8 -0.0 40 526-568 71-115 (372)
212 1in4_A RUVB, holliday junction 97.3 0.0012 3.9E-08 69.3 11.8 174 153-355 23-224 (334)
213 2ra8_A Uncharacterized protein 97.2 0.00064 2.2E-08 71.9 7.8 65 653-723 250-317 (362)
214 2r62_A Cell division protease 97.1 0.00014 4.7E-09 73.8 2.5 49 154-202 10-70 (268)
215 3pxi_A Negative regulator of g 97.1 0.00029 9.9E-09 82.7 5.0 148 155-323 491-675 (758)
216 2bjv_A PSP operon transcriptio 97.1 0.00023 7.8E-09 72.1 3.6 60 155-216 6-67 (265)
217 3m6a_A ATP-dependent protease 97.0 0.0028 9.5E-08 70.9 11.7 46 156-201 82-133 (543)
218 2c9o_A RUVB-like 1; hexameric 97.0 0.0031 1.1E-07 69.0 11.7 48 154-201 36-88 (456)
219 3cf2_A TER ATPase, transitiona 97.0 0.0027 9.2E-08 73.4 11.5 171 155-347 204-407 (806)
220 3t15_A Ribulose bisphosphate c 96.9 0.0099 3.4E-07 60.8 14.0 27 176-202 36-62 (293)
221 2ra8_A Uncharacterized protein 96.9 0.00065 2.2E-08 71.8 5.0 116 621-753 167-292 (362)
222 1ixz_A ATP-dependent metallopr 96.9 0.0065 2.2E-07 60.7 11.9 173 153-347 14-221 (254)
223 1n0w_A DNA repair protein RAD5 96.8 0.0065 2.2E-07 60.1 11.6 89 176-265 24-129 (243)
224 1qvr_A CLPB protein; coiled co 96.8 0.053 1.8E-06 64.3 20.5 46 156-201 559-613 (854)
225 3co5_A Putative two-component 96.7 0.00044 1.5E-08 62.5 1.7 45 156-200 5-51 (143)
226 2x8a_A Nuclear valosin-contain 96.7 0.011 3.7E-07 59.7 12.1 150 154-324 9-192 (274)
227 3hr8_A Protein RECA; alpha and 96.7 0.0066 2.2E-07 63.4 10.5 85 176-267 61-151 (356)
228 3io5_A Recombination and repai 96.7 0.0075 2.6E-07 61.1 10.4 86 177-267 29-123 (333)
229 1r6b_X CLPA protein; AAA+, N-t 96.6 0.003 1E-07 74.2 8.2 103 155-267 458-569 (758)
230 4fdw_A Leucine rich hypothetic 96.6 0.0093 3.2E-07 64.0 11.1 60 506-571 136-197 (401)
231 1v5w_A DMC1, meiotic recombina 96.5 0.013 4.5E-07 61.3 11.6 90 175-265 121-229 (343)
232 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.003 1E-07 64.3 6.2 68 177-266 124-193 (331)
233 2i1q_A DNA repair and recombin 96.5 0.015 5.2E-07 60.3 11.6 89 176-265 98-214 (322)
234 2cvh_A DNA repair and recombin 96.5 0.015 5E-07 56.5 10.9 85 176-267 20-117 (220)
235 4fdw_A Leucine rich hypothetic 96.4 0.011 3.6E-07 63.5 10.6 191 507-749 159-355 (401)
236 3rw6_A Nuclear RNA export fact 96.4 0.0015 5.1E-08 65.5 3.5 91 623-720 167-258 (267)
237 2dhr_A FTSH; AAA+ protein, hex 96.4 0.057 2E-06 59.1 16.3 173 153-347 29-236 (499)
238 2z43_A DNA repair and recombin 96.4 0.016 5.3E-07 60.3 11.1 89 176-265 107-213 (324)
239 2kjq_A DNAA-related protein; s 96.3 0.0042 1.4E-07 56.4 5.4 40 175-216 35-74 (149)
240 3lda_A DNA repair protein RAD5 96.3 0.016 5.5E-07 61.7 10.8 89 176-265 178-283 (400)
241 2qgz_A Helicase loader, putati 96.3 0.0051 1.7E-07 63.4 6.6 53 160-214 133-189 (308)
242 2zr9_A Protein RECA, recombina 96.3 0.013 4.4E-07 61.4 9.7 84 176-266 61-150 (349)
243 1xp8_A RECA protein, recombina 96.1 0.018 6.1E-07 60.6 10.0 84 176-266 74-163 (366)
244 4a74_A DNA repair and recombin 96.1 0.034 1.2E-06 54.2 11.5 90 176-266 25-136 (231)
245 3rw6_A Nuclear RNA export fact 96.0 0.0073 2.5E-07 60.4 6.2 85 550-687 166-257 (267)
246 1iy2_A ATP-dependent metallopr 96.0 0.015 5.2E-07 58.9 8.6 152 153-324 38-224 (278)
247 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.021 7.3E-07 55.8 9.2 47 176-226 23-69 (235)
248 1u94_A RECA protein, recombina 96.0 0.02 6.7E-07 60.0 9.3 83 176-265 63-151 (356)
249 3dm5_A SRP54, signal recogniti 95.8 0.36 1.2E-05 51.7 18.4 29 175-203 99-127 (443)
250 1rz3_A Hypothetical protein rb 95.8 0.012 4.1E-07 56.4 6.4 44 159-202 2-48 (201)
251 3kl4_A SRP54, signal recogniti 95.8 0.15 5.2E-06 54.6 15.3 89 175-265 96-189 (433)
252 1jr3_D DNA polymerase III, del 95.8 0.099 3.4E-06 54.6 13.8 165 169-355 11-186 (343)
253 2px0_A Flagellar biosynthesis 95.7 0.023 7.7E-07 58.0 8.5 87 175-264 104-191 (296)
254 1pzn_A RAD51, DNA repair and r 95.7 0.04 1.4E-06 57.7 10.3 92 175-267 130-243 (349)
255 3c8u_A Fructokinase; YP_612366 95.4 0.015 5.3E-07 56.0 5.7 41 162-202 6-48 (208)
256 1sky_E F1-ATPase, F1-ATP synth 95.4 0.039 1.3E-06 59.3 8.9 88 177-265 152-255 (473)
257 2dr3_A UPF0273 protein PH0284; 95.1 0.072 2.5E-06 52.5 9.7 39 176-216 23-61 (247)
258 3bh0_A DNAB-like replicative h 95.1 0.13 4.3E-06 53.0 11.5 51 176-230 68-118 (315)
259 2ehv_A Hypothetical protein PH 95.1 0.04 1.4E-06 54.6 7.5 38 176-215 30-68 (251)
260 1io0_A Tropomodulin; LRR prote 95.1 0.0091 3.1E-07 56.4 2.6 18 550-567 61-78 (185)
261 1ypw_A Transitional endoplasmi 95.0 0.035 1.2E-06 65.1 8.1 150 154-324 203-386 (806)
262 1g8p_A Magnesium-chelatase 38 95.0 0.012 4.3E-07 61.7 3.8 49 153-201 22-70 (350)
263 1fx0_B ATP synthase beta chain 94.9 0.073 2.5E-06 57.3 9.4 90 175-265 164-276 (498)
264 3kb2_A SPBC2 prophage-derived 94.9 0.015 5.1E-07 53.9 3.6 25 177-201 2-26 (173)
265 2r44_A Uncharacterized protein 94.9 0.02 6.7E-07 59.7 4.8 45 155-201 27-71 (331)
266 1qhx_A CPT, protein (chloramph 94.9 0.015 5.1E-07 54.4 3.5 25 177-201 4-28 (178)
267 2xxa_A Signal recognition part 94.8 0.12 4.1E-06 55.6 10.9 89 175-264 99-192 (433)
268 2ck3_D ATP synthase subunit be 94.8 0.14 4.8E-06 54.9 11.0 90 175-265 152-263 (482)
269 3ice_A Transcription terminati 94.7 0.025 8.6E-07 58.8 5.0 95 166-265 163-271 (422)
270 2hf9_A Probable hydrogenase ni 94.7 0.035 1.2E-06 54.1 5.9 39 163-201 25-63 (226)
271 1vma_A Cell division protein F 94.7 0.15 5.2E-06 52.0 10.8 86 175-264 103-195 (306)
272 1ojl_A Transcriptional regulat 94.7 0.021 7.3E-07 58.6 4.3 46 156-201 3-50 (304)
273 1io0_A Tropomodulin; LRR prote 94.7 0.016 5.4E-07 54.7 3.1 94 624-723 63-161 (185)
274 3vaa_A Shikimate kinase, SK; s 94.6 0.02 6.8E-07 54.7 3.8 27 175-201 24-50 (199)
275 3lw7_A Adenylate kinase relate 94.6 0.018 6.2E-07 53.5 3.4 20 177-196 2-21 (179)
276 3umf_A Adenylate kinase; rossm 94.6 0.042 1.4E-06 53.0 6.0 28 174-201 27-54 (217)
277 3cmu_A Protein RECA, recombina 94.6 0.062 2.1E-06 67.8 8.9 84 175-265 1426-1515(2050)
278 3uie_A Adenylyl-sulfate kinase 94.6 0.029 1E-06 53.6 4.8 29 173-201 22-50 (200)
279 2j37_W Signal recognition part 94.6 0.29 9.8E-06 53.6 13.1 58 175-234 100-158 (504)
280 1g5t_A COB(I)alamin adenosyltr 94.5 0.071 2.4E-06 50.1 7.2 116 176-293 28-163 (196)
281 1kgd_A CASK, peripheral plasma 94.5 0.02 6.8E-07 53.7 3.5 26 176-201 5-30 (180)
282 1odf_A YGR205W, hypothetical 3 94.5 0.041 1.4E-06 55.9 5.9 55 174-228 29-84 (290)
283 1ly1_A Polynucleotide kinase; 94.5 0.022 7.6E-07 53.2 3.6 22 177-198 3-24 (181)
284 1zp6_A Hypothetical protein AT 94.5 0.023 7.7E-07 53.8 3.7 25 175-199 8-32 (191)
285 1nks_A Adenylate kinase; therm 94.4 0.026 8.7E-07 53.4 4.1 26 177-202 2-27 (194)
286 3trf_A Shikimate kinase, SK; a 94.4 0.022 7.7E-07 53.5 3.6 26 176-201 5-30 (185)
287 4eun_A Thermoresistant glucoki 94.4 0.025 8.4E-07 54.1 3.8 27 174-200 27-53 (200)
288 2rhm_A Putative kinase; P-loop 94.3 0.03 1E-06 53.0 4.3 26 176-201 5-30 (193)
289 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.022 7.4E-07 62.5 3.7 44 156-201 23-66 (500)
290 2yvu_A Probable adenylyl-sulfa 94.3 0.029 9.9E-07 52.8 4.2 28 175-202 12-39 (186)
291 3tqc_A Pantothenate kinase; bi 94.3 0.12 4E-06 53.2 8.9 44 158-201 70-117 (321)
292 2wsm_A Hydrogenase expression/ 94.3 0.038 1.3E-06 53.6 5.1 41 161-201 15-55 (221)
293 3hws_A ATP-dependent CLP prote 94.3 0.037 1.3E-06 58.5 5.3 45 157-201 17-76 (363)
294 1kag_A SKI, shikimate kinase I 94.2 0.022 7.4E-07 52.9 3.0 25 177-201 5-29 (173)
295 2b8t_A Thymidine kinase; deoxy 94.2 0.017 6E-07 55.9 2.4 109 175-292 11-125 (223)
296 1gvn_B Zeta; postsegregational 94.2 0.046 1.6E-06 55.5 5.6 26 175-200 32-57 (287)
297 1kht_A Adenylate kinase; phosp 94.1 0.03 1E-06 52.8 3.8 26 177-202 4-29 (192)
298 1j8m_F SRP54, signal recogniti 94.1 0.16 5.6E-06 51.6 9.4 87 176-264 98-189 (297)
299 2ze6_A Isopentenyl transferase 94.0 0.032 1.1E-06 55.6 3.9 25 177-201 2-26 (253)
300 3t61_A Gluconokinase; PSI-biol 94.0 0.026 8.8E-07 54.0 3.1 26 176-201 18-43 (202)
301 2ga8_A Hypothetical 39.9 kDa p 94.0 0.069 2.4E-06 55.2 6.5 43 160-202 4-50 (359)
302 3tau_A Guanylate kinase, GMP k 94.0 0.03 1E-06 53.9 3.6 27 175-201 7-33 (208)
303 3iij_A Coilin-interacting nucl 94.0 0.027 9.3E-07 52.7 3.2 26 176-201 11-36 (180)
304 1knq_A Gluconate kinase; ALFA/ 94.0 0.035 1.2E-06 51.6 3.9 25 176-200 8-32 (175)
305 1xjc_A MOBB protein homolog; s 94.0 0.034 1.2E-06 51.2 3.7 29 175-203 3-31 (169)
306 1zuh_A Shikimate kinase; alpha 93.9 0.033 1.1E-06 51.4 3.6 27 175-201 6-32 (168)
307 1um8_A ATP-dependent CLP prote 93.9 0.049 1.7E-06 57.8 5.3 26 176-201 72-97 (376)
308 3tr0_A Guanylate kinase, GMP k 93.9 0.033 1.1E-06 53.3 3.6 25 176-200 7-31 (205)
309 3asz_A Uridine kinase; cytidin 93.8 0.043 1.5E-06 52.8 4.4 27 175-201 5-31 (211)
310 1ex7_A Guanylate kinase; subst 93.8 0.029 9.7E-07 52.8 2.9 25 177-201 2-26 (186)
311 1ls1_A Signal recognition part 93.8 0.18 6E-06 51.3 9.0 88 175-264 97-189 (295)
312 2jaq_A Deoxyguanosine kinase; 93.8 0.036 1.2E-06 52.9 3.7 24 178-201 2-25 (205)
313 1via_A Shikimate kinase; struc 93.8 0.03 1E-06 52.2 3.0 25 177-201 5-29 (175)
314 2qor_A Guanylate kinase; phosp 93.8 0.03 1E-06 53.7 3.1 27 175-201 11-37 (204)
315 1tev_A UMP-CMP kinase; ploop, 93.8 0.04 1.4E-06 52.1 4.0 26 176-201 3-28 (196)
316 2bdt_A BH3686; alpha-beta prot 93.8 0.037 1.3E-06 52.2 3.7 22 177-198 3-24 (189)
317 2c95_A Adenylate kinase 1; tra 93.7 0.041 1.4E-06 52.2 3.9 27 175-201 8-34 (196)
318 1ye8_A Protein THEP1, hypothet 93.7 0.042 1.4E-06 51.3 3.9 25 178-202 2-26 (178)
319 3a00_A Guanylate kinase, GMP k 93.7 0.029 9.9E-07 52.9 2.7 25 177-201 2-26 (186)
320 3tlx_A Adenylate kinase 2; str 93.6 0.093 3.2E-06 51.8 6.4 28 174-201 27-54 (243)
321 2plr_A DTMP kinase, probable t 93.6 0.047 1.6E-06 52.5 4.2 27 176-202 4-30 (213)
322 1cke_A CK, MSSA, protein (cyti 93.6 0.04 1.4E-06 53.7 3.7 25 177-201 6-30 (227)
323 3cm0_A Adenylate kinase; ATP-b 93.6 0.049 1.7E-06 51.1 4.2 26 176-201 4-29 (186)
324 3ney_A 55 kDa erythrocyte memb 93.6 0.041 1.4E-06 52.1 3.6 27 175-201 18-44 (197)
325 2z0h_A DTMP kinase, thymidylat 93.6 0.12 4E-06 48.9 6.9 25 178-202 2-26 (197)
326 1ukz_A Uridylate kinase; trans 93.6 0.049 1.7E-06 52.0 4.2 26 175-200 14-39 (203)
327 2j41_A Guanylate kinase; GMP, 93.6 0.041 1.4E-06 52.7 3.6 25 176-200 6-30 (207)
328 1y63_A LMAJ004144AAA protein; 93.5 0.044 1.5E-06 51.5 3.7 24 176-199 10-33 (184)
329 1uf9_A TT1252 protein; P-loop, 93.5 0.048 1.6E-06 52.0 4.1 26 174-199 6-31 (203)
330 2iyv_A Shikimate kinase, SK; t 93.5 0.033 1.1E-06 52.3 2.8 25 177-201 3-27 (184)
331 2bwj_A Adenylate kinase 5; pho 93.5 0.045 1.5E-06 52.0 3.7 26 176-201 12-37 (199)
332 1lvg_A Guanylate kinase, GMP k 93.5 0.033 1.1E-06 53.1 2.7 26 176-201 4-29 (198)
333 1uj2_A Uridine-cytidine kinase 93.5 0.047 1.6E-06 54.3 4.0 28 174-201 20-47 (252)
334 3hjn_A DTMP kinase, thymidylat 93.4 0.29 9.8E-06 46.4 9.3 51 178-230 2-52 (197)
335 3e70_C DPA, signal recognition 93.4 0.63 2.2E-05 47.9 12.5 58 174-233 127-185 (328)
336 2p5t_B PEZT; postsegregational 93.4 0.067 2.3E-06 53.2 5.0 27 175-201 31-57 (253)
337 1qf9_A UMP/CMP kinase, protein 93.4 0.053 1.8E-06 51.1 4.1 26 176-201 6-31 (194)
338 2if2_A Dephospho-COA kinase; a 93.4 0.045 1.5E-06 52.3 3.5 22 177-198 2-23 (204)
339 1e6c_A Shikimate kinase; phosp 93.3 0.039 1.3E-06 51.1 3.0 25 177-201 3-27 (173)
340 2bbw_A Adenylate kinase 4, AK4 93.3 0.048 1.6E-06 54.0 3.8 26 176-201 27-52 (246)
341 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.052 1.8E-06 54.3 4.0 26 176-201 4-29 (260)
342 4gp7_A Metallophosphoesterase; 93.3 0.04 1.4E-06 51.1 2.9 21 176-196 9-29 (171)
343 2qt1_A Nicotinamide riboside k 93.3 0.053 1.8E-06 52.0 3.9 26 175-200 20-45 (207)
344 3fwy_A Light-independent proto 93.2 0.11 3.6E-06 53.5 6.3 41 174-216 46-86 (314)
345 2ffh_A Protein (FFH); SRP54, s 93.2 0.35 1.2E-05 51.6 10.5 87 175-264 97-189 (425)
346 2cdn_A Adenylate kinase; phosp 93.2 0.053 1.8E-06 51.7 3.7 26 176-201 20-45 (201)
347 1tue_A Replication protein E1; 93.2 0.075 2.6E-06 50.2 4.5 38 164-201 45-83 (212)
348 2pt5_A Shikimate kinase, SK; a 93.2 0.055 1.9E-06 49.8 3.7 24 178-201 2-25 (168)
349 2wwf_A Thymidilate kinase, put 93.1 0.058 2E-06 51.8 3.9 32 176-208 10-41 (212)
350 1nn5_A Similar to deoxythymidy 93.1 0.062 2.1E-06 51.7 4.1 32 176-208 9-40 (215)
351 2pbr_A DTMP kinase, thymidylat 93.1 0.056 1.9E-06 51.1 3.7 24 178-201 2-25 (195)
352 2vli_A Antibiotic resistance p 93.0 0.036 1.2E-06 51.9 2.2 26 176-201 5-30 (183)
353 4a1f_A DNAB helicase, replicat 93.0 0.55 1.9E-05 48.5 11.2 51 176-230 46-96 (338)
354 1gtv_A TMK, thymidylate kinase 93.0 0.036 1.2E-06 53.4 2.2 25 178-202 2-26 (214)
355 1htw_A HI0065; nucleotide-bind 93.0 0.068 2.3E-06 48.7 3.9 27 174-200 31-57 (158)
356 3aez_A Pantothenate kinase; tr 93.0 0.067 2.3E-06 54.9 4.3 42 174-215 88-129 (312)
357 1aky_A Adenylate kinase; ATP:A 93.0 0.06 2E-06 52.2 3.8 26 176-201 4-29 (220)
358 4akg_A Glutathione S-transfera 92.9 0.8 2.8E-05 60.0 15.0 230 179-457 1270-1537(2695)
359 3fb4_A Adenylate kinase; psych 92.9 0.06 2.1E-06 52.0 3.7 24 178-201 2-25 (216)
360 2jeo_A Uridine-cytidine kinase 92.9 0.065 2.2E-06 53.0 4.0 27 174-200 23-49 (245)
361 1znw_A Guanylate kinase, GMP k 92.9 0.057 1.9E-06 51.8 3.4 27 175-201 19-45 (207)
362 1z6g_A Guanylate kinase; struc 92.8 0.049 1.7E-06 52.8 2.9 25 176-200 23-47 (218)
363 1jjv_A Dephospho-COA kinase; P 92.8 0.06 2E-06 51.6 3.5 22 177-198 3-24 (206)
364 2grj_A Dephospho-COA kinase; T 92.8 0.08 2.7E-06 50.0 4.3 27 174-200 10-36 (192)
365 1rj9_A FTSY, signal recognitio 92.8 0.066 2.2E-06 54.7 3.9 29 175-203 101-129 (304)
366 4e22_A Cytidylate kinase; P-lo 92.8 0.062 2.1E-06 53.4 3.6 27 175-201 26-52 (252)
367 2f1r_A Molybdopterin-guanine d 92.7 0.051 1.7E-06 50.3 2.7 27 177-203 3-29 (171)
368 1s96_A Guanylate kinase, GMP k 92.6 0.065 2.2E-06 51.9 3.5 27 175-201 15-41 (219)
369 1zak_A Adenylate kinase; ATP:A 92.6 0.063 2.1E-06 52.1 3.4 26 176-201 5-30 (222)
370 1zd8_A GTP:AMP phosphotransfer 92.6 0.065 2.2E-06 52.3 3.5 26 176-201 7-32 (227)
371 2r6a_A DNAB helicase, replicat 92.6 0.26 9E-06 53.6 8.7 50 176-228 203-252 (454)
372 3dl0_A Adenylate kinase; phosp 92.6 0.065 2.2E-06 51.8 3.4 23 178-200 2-24 (216)
373 1g41_A Heat shock protein HSLU 92.5 0.082 2.8E-06 56.7 4.4 47 156-202 16-76 (444)
374 3k1j_A LON protease, ATP-depen 92.5 0.071 2.4E-06 60.5 4.1 48 153-202 39-86 (604)
375 1m7g_A Adenylylsulfate kinase; 92.5 0.087 3E-06 50.7 4.2 28 174-201 23-50 (211)
376 1np6_A Molybdopterin-guanine d 92.4 0.082 2.8E-06 49.1 3.7 27 176-202 6-32 (174)
377 2i3b_A HCR-ntpase, human cance 92.3 0.07 2.4E-06 50.3 3.2 24 178-201 3-26 (189)
378 2pez_A Bifunctional 3'-phospho 92.2 0.099 3.4E-06 48.7 4.1 27 176-202 5-31 (179)
379 3cmw_A Protein RECA, recombina 92.2 0.25 8.4E-06 61.7 8.6 83 176-265 1431-1519(1706)
380 3sr0_A Adenylate kinase; phosp 92.2 0.088 3E-06 50.4 3.7 24 178-201 2-25 (206)
381 3b9q_A Chloroplast SRP recepto 92.2 0.094 3.2E-06 53.5 4.2 28 175-202 99-126 (302)
382 3cmw_A Protein RECA, recombina 92.2 0.25 8.5E-06 61.7 8.6 85 176-267 383-473 (1706)
383 3cf2_A TER ATPase, transitiona 92.2 0.18 6.1E-06 58.4 6.8 93 154-266 476-581 (806)
384 3p32_A Probable GTPase RV1496/ 92.1 0.19 6.6E-06 52.6 6.7 39 164-202 65-105 (355)
385 2q6t_A DNAB replication FORK h 92.1 0.63 2.2E-05 50.3 11.0 51 176-229 200-250 (444)
386 3d3q_A TRNA delta(2)-isopenten 92.1 0.086 3E-06 54.3 3.8 25 177-201 8-32 (340)
387 3r20_A Cytidylate kinase; stru 92.1 0.09 3.1E-06 51.2 3.7 26 176-201 9-34 (233)
388 2c61_A A-type ATP synthase non 92.1 0.15 5.3E-06 54.6 5.8 89 176-264 152-258 (469)
389 3vr4_D V-type sodium ATPase su 92.1 0.24 8.3E-06 52.8 7.2 89 177-265 152-258 (465)
390 2v54_A DTMP kinase, thymidylat 92.1 0.084 2.9E-06 50.3 3.5 25 176-200 4-28 (204)
391 2zts_A Putative uncharacterize 92.0 0.3 1E-05 48.0 7.7 49 176-227 30-78 (251)
392 1cr0_A DNA primase/helicase; R 92.0 0.27 9.3E-06 50.0 7.4 51 175-228 34-84 (296)
393 3l0o_A Transcription terminati 91.9 0.54 1.8E-05 48.9 9.3 51 166-217 164-216 (427)
394 3ake_A Cytidylate kinase; CMP 91.9 0.098 3.3E-06 50.0 3.7 24 178-201 4-27 (208)
395 1e4v_A Adenylate kinase; trans 91.9 0.1 3.5E-06 50.3 3.8 24 178-201 2-25 (214)
396 4eaq_A DTMP kinase, thymidylat 91.8 0.21 7E-06 48.7 6.0 28 175-202 25-52 (229)
397 1vht_A Dephospho-COA kinase; s 91.8 0.11 3.6E-06 50.3 4.0 23 176-198 4-26 (218)
398 3be4_A Adenylate kinase; malar 91.8 0.1 3.5E-06 50.4 3.8 25 177-201 6-30 (217)
399 1sq5_A Pantothenate kinase; P- 91.8 0.2 7E-06 51.3 6.2 28 174-201 78-105 (308)
400 3cmu_A Protein RECA, recombina 91.8 0.31 1.1E-05 61.6 8.9 84 176-266 383-472 (2050)
401 2xb4_A Adenylate kinase; ATP-b 91.8 0.1 3.5E-06 50.7 3.7 24 178-201 2-25 (223)
402 2f6r_A COA synthase, bifunctio 91.7 0.11 3.7E-06 52.5 3.9 24 175-198 74-97 (281)
403 3exa_A TRNA delta(2)-isopenten 91.7 0.096 3.3E-06 53.1 3.4 25 176-200 3-27 (322)
404 2onk_A Molybdate/tungstate ABC 91.7 0.092 3.1E-06 51.6 3.2 26 174-200 23-48 (240)
405 3crm_A TRNA delta(2)-isopenten 91.6 0.1 3.5E-06 53.4 3.6 26 176-201 5-30 (323)
406 3lv8_A DTMP kinase, thymidylat 91.6 0.29 1E-05 47.7 6.8 37 176-213 27-63 (236)
407 3nwj_A ATSK2; P loop, shikimat 91.6 0.087 3E-06 52.1 3.0 26 176-201 48-73 (250)
408 3end_A Light-independent proto 91.6 0.24 8.1E-06 50.8 6.4 42 173-216 38-79 (307)
409 3lnc_A Guanylate kinase, GMP k 91.6 0.062 2.1E-06 52.6 1.9 25 176-200 27-52 (231)
410 3upu_A ATP-dependent DNA helic 91.5 0.33 1.1E-05 52.9 7.9 43 160-203 30-72 (459)
411 3bgw_A DNAB-like replicative h 91.5 0.61 2.1E-05 50.4 9.9 50 176-229 197-246 (444)
412 2pcj_A ABC transporter, lipopr 91.5 0.086 2.9E-06 51.3 2.8 25 176-200 30-54 (224)
413 1zu4_A FTSY; GTPase, signal re 91.5 0.19 6.5E-06 51.7 5.5 38 175-214 104-141 (320)
414 3tif_A Uncharacterized ABC tra 91.4 0.095 3.2E-06 51.4 3.1 26 175-200 30-55 (235)
415 1ak2_A Adenylate kinase isoenz 91.4 0.12 4.3E-06 50.5 4.0 26 176-201 16-41 (233)
416 2og2_A Putative signal recogni 91.4 0.13 4.4E-06 53.8 4.2 28 175-202 156-183 (359)
417 2eyu_A Twitching motility prot 91.4 0.19 6.6E-06 50.0 5.3 29 174-202 23-51 (261)
418 4tmk_A Protein (thymidylate ki 91.3 0.35 1.2E-05 46.4 6.9 52 177-229 4-55 (213)
419 3foz_A TRNA delta(2)-isopenten 91.3 0.14 4.9E-06 51.7 4.2 27 175-201 9-35 (316)
420 2yhs_A FTSY, cell division pro 91.3 0.24 8.2E-06 53.6 6.2 42 175-219 292-333 (503)
421 3b85_A Phosphate starvation-in 91.2 0.084 2.9E-06 50.6 2.4 24 176-199 22-45 (208)
422 1q57_A DNA primase/helicase; d 91.2 0.62 2.1E-05 51.3 9.8 57 176-235 242-299 (503)
423 4edh_A DTMP kinase, thymidylat 91.2 0.38 1.3E-05 46.1 7.0 32 176-208 6-37 (213)
424 1oix_A RAS-related protein RAB 91.1 0.12 4.3E-06 48.6 3.5 25 176-200 29-53 (191)
425 1a7j_A Phosphoribulokinase; tr 91.1 0.072 2.5E-06 54.1 1.9 27 175-201 4-30 (290)
426 3a8t_A Adenylate isopentenyltr 91.0 0.098 3.4E-06 53.7 2.8 26 175-200 39-64 (339)
427 1yrb_A ATP(GTP)binding protein 91.0 0.17 5.8E-06 50.4 4.5 27 175-201 13-39 (262)
428 2cbz_A Multidrug resistance-as 90.9 0.1 3.6E-06 51.2 2.8 26 175-200 30-55 (237)
429 3ld9_A DTMP kinase, thymidylat 90.9 0.31 1E-05 47.1 6.0 56 173-229 18-74 (223)
430 3gqb_B V-type ATP synthase bet 90.8 0.34 1.2E-05 51.6 6.8 89 177-265 148-261 (464)
431 2d2e_A SUFC protein; ABC-ATPas 90.8 0.13 4.3E-06 51.1 3.3 24 176-199 29-52 (250)
432 1b0u_A Histidine permease; ABC 90.8 0.11 3.6E-06 52.0 2.7 26 175-200 31-56 (262)
433 3gfo_A Cobalt import ATP-bindi 90.8 0.12 4.1E-06 51.9 3.1 25 176-200 34-58 (275)
434 2r8r_A Sensor protein; KDPD, P 90.7 0.36 1.2E-05 46.4 6.2 38 177-216 7-44 (228)
435 3geh_A MNME, tRNA modification 90.6 1.7 5.9E-05 47.0 12.4 88 67-200 161-248 (462)
436 2zu0_C Probable ATP-dependent 90.6 0.13 4.5E-06 51.4 3.3 25 175-199 45-69 (267)
437 1ji0_A ABC transporter; ATP bi 90.6 0.11 3.9E-06 51.0 2.8 25 176-200 32-56 (240)
438 1ltq_A Polynucleotide kinase; 90.6 0.15 5.2E-06 52.0 3.8 23 177-199 3-25 (301)
439 3io3_A DEHA2D07832P; chaperone 90.5 0.32 1.1E-05 50.6 6.2 47 173-221 15-63 (348)
440 1g6h_A High-affinity branched- 90.5 0.12 3.9E-06 51.6 2.8 25 176-200 33-57 (257)
441 3mfy_A V-type ATP synthase alp 90.5 0.64 2.2E-05 50.6 8.6 96 167-266 217-335 (588)
442 1mv5_A LMRA, multidrug resista 90.5 0.13 4.5E-06 50.6 3.1 26 175-200 27-52 (243)
443 2f9l_A RAB11B, member RAS onco 90.5 0.14 4.7E-06 48.6 3.2 24 176-199 5-28 (199)
444 1sgw_A Putative ABC transporte 90.4 0.1 3.5E-06 50.3 2.2 25 176-200 35-59 (214)
445 2olj_A Amino acid ABC transpor 90.4 0.12 4.1E-06 51.6 2.7 26 175-200 49-74 (263)
446 3iqw_A Tail-anchored protein t 90.4 0.34 1.2E-05 50.1 6.3 49 172-222 12-60 (334)
447 4g1u_C Hemin import ATP-bindin 90.4 0.13 4.5E-06 51.4 3.1 26 176-201 37-62 (266)
448 2ff7_A Alpha-hemolysin translo 90.4 0.12 4.2E-06 51.0 2.8 25 176-200 35-59 (247)
449 2wji_A Ferrous iron transport 90.4 0.18 6.1E-06 46.1 3.8 22 177-198 4-25 (165)
450 2v9p_A Replication protein E1; 90.4 0.15 5.1E-06 51.9 3.5 27 174-200 124-150 (305)
451 2dyk_A GTP-binding protein; GT 90.4 0.18 6E-06 45.6 3.7 23 177-199 2-24 (161)
452 2pze_A Cystic fibrosis transme 90.4 0.12 4.2E-06 50.3 2.7 25 176-200 34-58 (229)
453 3eph_A TRNA isopentenyltransfe 90.3 0.18 6.1E-06 53.1 4.0 25 177-201 3-27 (409)
454 2qe7_A ATP synthase subunit al 90.2 0.42 1.4E-05 51.5 6.9 86 176-265 162-264 (502)
455 1vpl_A ABC transporter, ATP-bi 90.2 0.13 4.4E-06 51.1 2.7 26 175-200 40-65 (256)
456 2qmh_A HPR kinase/phosphorylas 90.1 0.13 4.5E-06 48.3 2.5 25 176-200 34-58 (205)
457 2ghi_A Transport protein; mult 90.1 0.13 4.6E-06 51.2 2.8 26 175-200 45-70 (260)
458 2ixe_A Antigen peptide transpo 90.0 0.13 4.6E-06 51.5 2.8 26 175-200 44-69 (271)
459 3sop_A Neuronal-specific septi 90.0 0.17 5.9E-06 50.7 3.5 24 178-201 4-27 (270)
460 2qi9_C Vitamin B12 import ATP- 90.0 0.14 4.7E-06 50.7 2.7 25 176-200 26-50 (249)
461 2zej_A Dardarin, leucine-rich 90.0 0.14 4.9E-06 47.8 2.8 21 178-198 4-24 (184)
462 4gzl_A RAS-related C3 botulinu 90.0 0.2 6.7E-06 47.8 3.8 37 164-200 18-54 (204)
463 2ck3_A ATP synthase subunit al 89.9 1.3 4.4E-05 47.9 10.3 90 176-265 162-272 (510)
464 2ocp_A DGK, deoxyguanosine kin 89.9 0.22 7.4E-06 49.0 4.1 26 176-201 2-27 (241)
465 2yz2_A Putative ABC transporte 89.9 0.14 4.9E-06 51.2 2.8 26 175-200 32-57 (266)
466 2nq2_C Hypothetical ABC transp 89.8 0.14 4.9E-06 50.7 2.7 25 176-200 31-55 (253)
467 1tq4_A IIGP1, interferon-induc 89.8 0.25 8.5E-06 52.6 4.8 25 174-198 67-91 (413)
468 2ce2_X GTPase HRAS; signaling 89.8 0.18 6.3E-06 45.6 3.3 23 178-200 5-27 (166)
469 3oaa_A ATP synthase subunit al 89.8 1 3.5E-05 48.4 9.4 86 176-265 162-264 (513)
470 1nlf_A Regulatory protein REPA 89.8 0.17 5.9E-06 51.0 3.4 26 176-201 30-55 (279)
471 2ihy_A ABC transporter, ATP-bi 89.8 0.14 4.9E-06 51.5 2.7 25 176-200 47-71 (279)
472 3vr4_A V-type sodium ATPase ca 89.7 0.53 1.8E-05 51.5 7.2 95 167-265 222-339 (600)
473 1svm_A Large T antigen; AAA+ f 89.6 0.38 1.3E-05 50.6 5.9 27 174-200 167-193 (377)
474 1q3t_A Cytidylate kinase; nucl 89.6 0.22 7.5E-06 48.7 3.9 27 175-201 15-41 (236)
475 3f9v_A Minichromosome maintena 89.5 0.1 3.5E-06 58.8 1.6 45 156-200 296-351 (595)
476 1u0j_A DNA replication protein 89.5 0.34 1.2E-05 48.0 5.1 37 164-200 90-128 (267)
477 1g8f_A Sulfate adenylyltransfe 89.5 0.34 1.2E-05 53.0 5.6 46 157-202 374-421 (511)
478 2orw_A Thymidine kinase; TMTK, 89.5 0.44 1.5E-05 44.6 5.7 26 177-202 4-29 (184)
479 2ged_A SR-beta, signal recogni 89.4 0.36 1.2E-05 45.2 5.2 25 175-199 47-71 (193)
480 1z2a_A RAS-related protein RAB 89.4 0.2 6.7E-06 45.6 3.2 24 176-199 5-28 (168)
481 1cp2_A CP2, nitrogenase iron p 89.4 0.47 1.6E-05 47.3 6.3 38 177-216 2-39 (269)
482 1nij_A Hypothetical protein YJ 89.4 0.21 7E-06 51.5 3.7 26 175-200 3-28 (318)
483 2r9v_A ATP synthase subunit al 89.4 0.38 1.3E-05 51.9 5.7 86 176-265 175-277 (515)
484 2afh_E Nitrogenase iron protei 89.3 0.44 1.5E-05 48.2 6.0 39 176-216 2-40 (289)
485 1zj6_A ADP-ribosylation factor 89.3 0.37 1.3E-05 44.9 5.1 34 165-199 6-39 (187)
486 3zvl_A Bifunctional polynucleo 89.2 0.15 5.1E-06 54.8 2.5 27 174-200 256-282 (416)
487 2wjg_A FEOB, ferrous iron tran 89.1 0.25 8.6E-06 46.0 3.8 24 176-199 7-30 (188)
488 1tf7_A KAIC; homohexamer, hexa 89.0 0.61 2.1E-05 51.7 7.4 82 178-264 41-147 (525)
489 3cr8_A Sulfate adenylyltranfer 89.0 0.38 1.3E-05 53.3 5.7 28 175-202 368-395 (552)
490 3con_A GTPase NRAS; structural 88.9 0.22 7.5E-06 46.6 3.2 24 177-200 22-45 (190)
491 1r8s_A ADP-ribosylation factor 88.9 0.24 8.2E-06 44.9 3.4 22 179-200 3-24 (164)
492 2pjz_A Hypothetical protein ST 88.9 0.18 6.3E-06 50.2 2.7 24 176-199 30-53 (263)
493 1fzq_A ADP-ribosylation factor 88.9 0.31 1.1E-05 45.2 4.3 26 174-199 14-39 (181)
494 3jvv_A Twitching mobility prot 88.9 0.35 1.2E-05 50.5 5.0 114 174-296 121-234 (356)
495 1moz_A ARL1, ADP-ribosylation 88.9 0.24 8.3E-06 45.9 3.4 32 167-198 8-40 (183)
496 3fvq_A Fe(3+) IONS import ATP- 88.8 0.22 7.6E-06 51.8 3.4 26 176-201 30-55 (359)
497 2vp4_A Deoxynucleoside kinase; 88.8 0.17 5.8E-06 49.4 2.3 25 175-199 19-43 (230)
498 1u8z_A RAS-related protein RAL 88.7 0.23 8E-06 45.0 3.2 24 177-200 5-28 (168)
499 3nh6_A ATP-binding cassette SU 88.7 0.18 6.2E-06 51.4 2.6 26 175-200 79-104 (306)
500 2www_A Methylmalonic aciduria 88.7 0.48 1.6E-05 49.4 5.9 28 175-202 73-100 (349)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.7e-47 Score=431.55 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=241.6
Q ss_pred cchHHHHHHHHHHhhcC---CeEEEEEEeCCCChHHHHHHHHHH--HhhccCCCCEEEEEEeCCCC--CHHHHHHHHHHH
Q 003996 158 ESRVSTLKSIQNALTDA---NVSIIGVYGMGGIGKTTLVKEFVR--QASENKLFDRVVFSEVSQTP--DIKKIQGEIAEK 230 (780)
Q Consensus 158 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~ 230 (780)
+||+.++++|.++|... +.++|+|+||||+||||||+++|+ +.+.+.+|+.++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 679999999999999999999998 56777889999999999985 899999999999
Q ss_pred hCCCCC--------chhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhhcC-C
Q 003996 231 LGLELS--------DEAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLSMG-S 301 (780)
Q Consensus 231 l~~~~~--------~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~~-~ 301 (780)
++.... ..+.......+.+.+.++||+||||||||+...+ .+ + ..+||+||||||+..++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986521 1233455678888888744999999999998754 11 1 126999999999999998776 3
Q ss_pred CceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHH-hcCCCCCCc
Q 003996 302 KDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRE-LQTPSVVNF 380 (780)
Q Consensus 302 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~-l~~~~~~~~ 380 (780)
...|+|++|+.++||+||.++++....++++.+++++|+++|+|+||||+++|+.|+.++. +|...+.. +...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~----- 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR----- 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH-----
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc-----
Confidence 4579999999999999999999865545788889999999999999999999999987643 23232322 1110
Q ss_pred CCCCccccchHHhhhccCChhhHHHHHH-----------hhcccCCCCCHHHHHHHHHhc--CcccCcc---chHHHHHH
Q 003996 381 EGVPAETYSSIELSFKYLKGEQLKKIFQ-----------LCSLIGNSFCLIDLLRYSMGL--GIFHRVN---KMEDARNK 444 (780)
Q Consensus 381 ~~~~~~i~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~i~~~~Li~~W~a~--g~i~~~~---~~~~~~~~ 444 (780)
....+..++.+||++||++ +|.||+ |||+||.++... +++|+|+ ||+.... +.+++
T Consensus 359 --~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~--- 430 (549)
T 2a5y_B 359 --GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEV--- 430 (549)
T ss_dssp --CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHH---
T ss_pred --cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHH---
Confidence 1356899999999999998 999999 999999444433 8999999 9997532 23332
Q ss_pred HHHHHHHHHHcccccccC--CCCeEEEcHHHHHHHHHHhccCc
Q 003996 445 LYALVHELRDCCLLLEGD--CNETFSMHDVVCDVAVSIACRDQ 485 (780)
Q Consensus 445 ~~~~i~~L~~~~ll~~~~--~~~~~~mHdlv~d~a~~~~~~~~ 485 (780)
.. ++++|+++||++... ...+|+|||+||+||++++.+++
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 23 799999999998653 34589999999999999987654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.5e-38 Score=360.36 Aligned_cols=281 Identities=17% Similarity=0.159 Sum_probs=224.0
Q ss_pred cccchHHHHHHHHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCC
Q 003996 156 AFESRVSTLKSIQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDR-VVFSEVSQTPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~ 233 (780)
..+||+.++++|.++|.+ ++.++|+|+||||+||||||++++++.+.+.+|+. ++|+++++.++...++..|++.++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 348999999999999985 56799999999999999999999998766677985 9999999999988888888775421
Q ss_pred C-------CC-----chhHHHHHHHHHHHHh--cCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHhhc
Q 003996 234 E-------LS-----DEAEYRRASRLYERLK--NENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLLSM 299 (780)
Q Consensus 234 ~-------~~-----~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~~~ 299 (780)
. .. ..........+.+.+. .++|+||||||||+...|+.+. .||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 1 11 0122334555666552 3589999999999988887642 689999999999988644
Q ss_pred CCCceEecC------CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcC--CHHHHHHHHHH
Q 003996 300 GSKDNFLIG------NLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNK--SLHEWKNALRE 371 (780)
Q Consensus 300 ~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~--~~~~w~~~l~~ 371 (780)
.....+.++ +|+.+|||+||.+..+.. . .++..+| |+|+||||+++|+.|+++ +.++|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 333356666 999999999999986532 1 2233344 999999999999999976 78889752
Q ss_pred hcCCCCCCcCCCCccccchHHhhhccCChhhH-HHHHHhhcccC--CCCCHHHHHHHHHhcCcccCccchHHHHHHHHHH
Q 003996 372 LQTPSVVNFEGVPAETYSSIELSFKYLKGEQL-KKIFQLCSLIG--NSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYAL 448 (780)
Q Consensus 372 l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cf~~~s~fp--~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~ 448 (780)
....+..++.+||+.||++ . |.||+|||+|| +.|+.+.++.+|+++|- + .+..+
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~ 407 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVV 407 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHH
T ss_pred -----------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHH
Confidence 1367899999999999998 7 99999999999 57888999999998871 1 24567
Q ss_pred HHHHHHcccccccCCCCeEEEcHHHHHHH
Q 003996 449 VHELRDCCLLLEGDCNETFSMHDVVCDVA 477 (780)
Q Consensus 449 i~~L~~~~ll~~~~~~~~~~mHdlv~d~a 477 (780)
+++|+++||++..+...+|+|||++++++
T Consensus 408 L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999998865567899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4e-37 Score=387.15 Aligned_cols=312 Identities=20% Similarity=0.288 Sum_probs=245.7
Q ss_pred cCCCcccccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhc-cC-CCCEEEEEEeCCCCC--HHHH
Q 003996 150 SNKGYEAFESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASE-NK-LFDRVVFSEVSQTPD--IKKI 223 (780)
Q Consensus 150 ~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~-~F~~~~wv~vs~~~~--~~~i 223 (780)
.|.....|+||++++++|.++|. +++.++|+|+||||+||||||++++++.+. .. .|+.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 44556779999999999999996 467899999999999999999999987643 33 447899999998543 4455
Q ss_pred HHHHHHHhCCCCC-----chhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 224 QGEIAEKLGLELS-----DEAEYRRASRLYERLKN-ENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 224 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
+..++..++.... ..........+...+.. ++|+||||||||+...|..+ .+||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 6777777765321 23344556666666655 24999999999998777754 46899999999999885
Q ss_pred h-cCCCceEecCC-CCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 003996 298 S-MGSKDNFLIGN-LNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTP 375 (780)
Q Consensus 298 ~-~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~ 375 (780)
. ++....+.+++ |+++|+++||...++.. .+...+++++|+++|+|+||||+++|++|+.++ ..|...++.+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhh
Confidence 3 45667899996 99999999999988643 234456799999999999999999999999765 4688888887655
Q ss_pred CCCCcC----CCCccccchHHhhhccCChhhHHHHHHhhcccC--CCCCHHHHHHHHHhcCcccCccchHHHHHHHHHHH
Q 003996 376 SVVNFE----GVPAETYSSIELSFKYLKGEQLKKIFQLCSLIG--NSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYALV 449 (780)
Q Consensus 376 ~~~~~~----~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp--~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~i 449 (780)
...... .....+..++.+||+.||++ .|.||+|||+|| +.|+.+.++.+|.+++ +.+.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l 415 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDIL 415 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHH
Confidence 433221 11246899999999999998 899999999999 6799999999996542 3345679
Q ss_pred HHHHHcccccccCCC--CeEEEcHHHHHHHHHHhccC
Q 003996 450 HELRDCCLLLEGDCN--ETFSMHDVVCDVAVSIACRD 484 (780)
Q Consensus 450 ~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~~~ 484 (780)
++|+++||++..... .+|+|||+||++|+..+.++
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999999865333 36999999999999997765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=328.23 Aligned_cols=307 Identities=20% Similarity=0.306 Sum_probs=232.1
Q ss_pred CCCcccccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhc-cCCC-CEEEEEEeCCCCCHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASE-NKLF-DRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~ 226 (780)
|.....|+||+.++++|.++|. .++.++|+|+||||+||||||.+++++... ..+| +.++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3355679999999999999997 356799999999999999999999987644 4568 58999999875 33333333
Q ss_pred ---HHHHhCCC-----CCchhHHHHHHHHHHHHhcC-CeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 227 ---IAEKLGLE-----LSDEAEYRRASRLYERLKNE-NKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 227 ---i~~~l~~~-----~~~~~~~~~~~~l~~~l~~~-k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
++..++.. ............+...+.+. +++||||||+|+...+..+ ..|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 34455521 11233445566677766653 6899999999987665533 45899999999998876
Q ss_pred hcCCCceEec---CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 003996 298 SMGSKDNFLI---GNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQT 374 (780)
Q Consensus 298 ~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~ 374 (780)
.+. ...+.+ ++|+.+|+++||...++... ....+.+.+|+++|+|+|+||..+|+.++... ..|..+++.+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc--ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 543 234444 58999999999999987522 22345788999999999999999999998653 368888888765
Q ss_pred CCCCCc----CCCCccccchHHhhhccCChhhHHHHHHhhcccC--CCCCHHHHHHHHHhcCcccCccchHHHHHHHHHH
Q 003996 375 PSVVNF----EGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIG--NSFCLIDLLRYSMGLGIFHRVNKMEDARNKLYAL 448 (780)
Q Consensus 375 ~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp--~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~ 448 (780)
...... ......+..++..||+.||++ .|.||++||+|| ..|+.+.+..+|.+++ ..+..+
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~ 414 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDI 414 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHH
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHH
Confidence 432211 122357889999999999998 899999999998 5788899999995431 234567
Q ss_pred HHHHHHcccccccC--CCCeEEEcHHHHHHHHHHhc
Q 003996 449 VHELRDCCLLLEGD--CNETFSMHDVVCDVAVSIAC 482 (780)
Q Consensus 449 i~~L~~~~ll~~~~--~~~~~~mHdlv~d~a~~~~~ 482 (780)
+++|+++||++... ...+|+||+++|++++....
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 99999999997542 33479999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=2.5e-15 Score=160.96 Aligned_cols=289 Identities=14% Similarity=0.161 Sum_probs=175.9
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC------CHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP------DIKKIQG 225 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~ 225 (780)
.....|+||+.+++.|.+++.++ +++.|+|++|+|||||++++.+.. . .+|+++.... +...++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 34567999999999999988754 789999999999999999999764 1 6777765432 5666777
Q ss_pred HHHHHhCC-----------------CCC--chhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCc---------cccCCCC
Q 003996 226 EIAEKLGL-----------------ELS--DEAEYRRASRLYERLKNENKILVILDNIWKHLDL---------DTVGIPF 277 (780)
Q Consensus 226 ~i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~l~~~l 277 (780)
.+.+.+.. ..+ ..........+.+.....++++||+||++....+ ..+.. +
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~ 158 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-A 158 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-H
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-H
Confidence 77666542 000 0112223333444333223899999999764431 11111 1
Q ss_pred CCCCCCcEEEEEeCChHHHhh-----------cCC-CceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC
Q 003996 278 GNDHEGCRLLLTARDINVLLS-----------MGS-KDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG 345 (780)
Q Consensus 278 ~~~~~gs~IlvTTR~~~v~~~-----------~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 345 (780)
.+...+.++|+|++....... .+. ...+.+.+|+.+|+.+++.+.+...... --.+.+..|++.++|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDG 237 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCC
Confidence 111247789999987653221 111 2478999999999999998764321111 113577899999999
Q ss_pred ChHHHHHHHHHHhc-CCHHHHH-HHHHHhcCCCCCCcCCCCccccchHHhhhccC---ChhhHHHHHHhhcccCCCCCHH
Q 003996 346 LPIALTTVARALRN-KSLHEWK-NALRELQTPSVVNFEGVPAETYSSIELSFKYL---KGEQLKKIFQLCSLIGNSFCLI 420 (780)
Q Consensus 346 lPLai~~~~~~L~~-~~~~~w~-~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cf~~~s~fp~~i~~~ 420 (780)
+|+++..++..+.. .+...+. ...+. +...+.-.+..+ ++. .+..+..+|. ..++..
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~--g~~~~~ 299 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPR-YVDILRAIAL--GYNRWS 299 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT--TCCSHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChh-HHHHHHHHHh--CCCCHH
Confidence 99999999876542 2332221 11111 111111122222 565 7888888887 235556
Q ss_pred HHHHHHHhcCcccCccchHHHHHHHHHHHHHHHHcccccccCCCCeEE-EcHHHHHHHH
Q 003996 421 DLLRYSMGLGIFHRVNKMEDARNKLYALVHELRDCCLLLEGDCNETFS-MHDVVCDVAV 478 (780)
Q Consensus 421 ~Li~~W~a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~~~~~~~-mHdlv~d~a~ 478 (780)
.+.....+.. - + -+ ...+..+++.|.+.+++...+ +.|+ .|++++++.+
T Consensus 300 ~l~~~~~~~~-~-~-~~----~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKG-T-K-IP----EPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTT-C-C-CC----HHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHh-C-C-CC----HHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 6655432210 0 0 01 123456788899999997642 3454 4788887754
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=5.5e-16 Score=164.23 Aligned_cols=209 Identities=21% Similarity=0.315 Sum_probs=166.4
Q ss_pred ccceEEEeecCcccccCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh
Q 003996 505 KKCYAISLLNSSIHEVSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L 583 (780)
..++.+.+.++.+..+|.. ..+++|++|.+.++... .+|.. |.++++|++|+|++|.+..++. .+++|++|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~-~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDT-MQQFAGLETLTLARNPLRALPA-SIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSC-GGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHH-HhccCCCCEEECCCCccccCcH-HHhcCcCCCEE
Confidence 4688999999998888765 36899999999988763 56654 6899999999999999998886 68899999988
Q ss_pred ----hhcccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCcc
Q 003996 584 ----CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLT 658 (780)
Q Consensus 584 ----~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~ 658 (780)
|..+.. |.... .......+..+++|++|++++|.++. +|.+++.+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~--------------------~~~~~~~~~~l~~L~~L~L~~n~l~~------lp~~l~~l~~L~ 209 (328)
T 4fcg_A 156 SIRACPELTELPEPLA--------------------STDASGEHQGLVNLQSLRLEWTGIRS------LPASIANLQNLK 209 (328)
T ss_dssp EEEEETTCCCCCSCSE--------------------EEC-CCCEEESTTCCEEEEEEECCCC------CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHh--------------------hccchhhhccCCCCCEEECcCCCcCc------chHhhcCCCCCC
Confidence 333333 43000 00111235568999999999998864 555689999999
Q ss_pred EEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCC
Q 003996 659 RLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW 738 (780)
Q Consensus 659 ~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 738 (780)
.|+|++|. +..+| +.+..+++|+.|++++|.....++. .++.+++|++|+|++|..+..++. ....+
T Consensus 210 ~L~L~~N~-l~~l~--~~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l 276 (328)
T 4fcg_A 210 SLKIRNSP-LSALG--PAIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPL--DIHRL 276 (328)
T ss_dssp EEEEESSC-CCCCC--GGGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCT--TGGGC
T ss_pred EEEccCCC-CCcCc--hhhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcch--hhhcC
Confidence 99999997 77776 5688999999999999887766653 567899999999999999998854 34789
Q ss_pred cccceeecccCCCCCCcCC
Q 003996 739 PALKNLVACNCDKITLSQN 757 (780)
Q Consensus 739 p~L~~L~i~~C~~L~~~~~ 757 (780)
++|+.|++++|+.+..+|.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TTCCEEECTTCTTCCCCCG
T ss_pred CCCCEEeCCCCCchhhccH
Confidence 9999999999999998884
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.5e-14 Score=155.23 Aligned_cols=288 Identities=15% Similarity=0.209 Sum_probs=170.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-----CCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-----PDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i 227 (780)
....|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|++.... .+....+..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 765 69999999999999999999987642 2578887642 3445555555
Q ss_pred HHHhC------------------CCCC----chh----HHHHHHHHHHHHhcC--CeEEEEEeCCCCcc-----CccccC
Q 003996 228 AEKLG------------------LELS----DEA----EYRRASRLYERLKNE--NKILVILDNIWKHL-----DLDTVG 274 (780)
Q Consensus 228 ~~~l~------------------~~~~----~~~----~~~~~~~l~~~l~~~--k~~LlVlDdv~~~~-----~~~~l~ 274 (780)
.+.+. .+.+ ... .......+.+.+... ++++||+||++... ++..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 44331 0000 000 011123344444331 38999999996532 222111
Q ss_pred CCCCCCCCCcEEEEEeCChHHHhh----------c-CC-CceEecCCCCHHHHHHHHHHHcCC-CCCCcchHHHHHHHHH
Q 003996 275 IPFGNDHEGCRLLLTARDINVLLS----------M-GS-KDNFLIGNLNEEEAWRLFKIMNGD-DVENCKFKSTAINVAQ 341 (780)
Q Consensus 275 ~~l~~~~~gs~IlvTTR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~ 341 (780)
..+.+...+.++|+|++....... . +. ...+.+.+|+.+|+.+++...+.. ....... ..|++
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~ 237 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYE 237 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHH
Confidence 111112246789999998653221 1 11 257899999999999999876531 1111121 78999
Q ss_pred HhCCChHHHHHHHHHHhc-CCHHHHHH-HHHHhcCCCCCCcCCCCccccchHH-hhh--ccCChhhHHHHHHhhcccCCC
Q 003996 342 ACGGLPIALTTVARALRN-KSLHEWKN-ALRELQTPSVVNFEGVPAETYSSIE-LSF--KYLKGEQLKKIFQLCSLIGNS 416 (780)
Q Consensus 342 ~c~GlPLai~~~~~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~cf~~~s~fp~~ 416 (780)
.|+|+|+++..++..+.. .+...|.. +.+.. ...+...+. +.+ ..+++. .+..+..+|. . .
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g-~ 303 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSK-C-G 303 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-C-B
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc-C-C
Confidence 999999999999887652 34333321 11110 000111111 111 157776 7889988888 2 2
Q ss_pred CCHHHHHHHHH-hcCcccCccchHHHHHHHHHHHHHHHHcccccccCCCCeEE-EcHHHHHHH
Q 003996 417 FCLIDLLRYSM-GLGIFHRVNKMEDARNKLYALVHELRDCCLLLEGDCNETFS-MHDVVCDVA 477 (780)
Q Consensus 417 i~~~~Li~~W~-a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~~~~~~~-mHdlv~d~a 477 (780)
+...+....- ..|. .- ....+..+++.|.+.+++...+ ..|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~---~~----~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI---EI----SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS---CC----CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC---CC----CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 5555543221 1120 00 1123456788999999997643 3455 588988764
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=8e-14 Score=152.89 Aligned_cols=300 Identities=16% Similarity=0.130 Sum_probs=181.6
Q ss_pred ccccchHHHHHHHHHHh-h----c--CCeEEEEE--EeCCCChHHHHHHHHHHHhhcc---CCCC-EEEEEEeCCCCCHH
Q 003996 155 EAFESRVSTLKSIQNAL-T----D--ANVSIIGV--YGMGGIGKTTLVKEFVRQASEN---KLFD-RVVFSEVSQTPDIK 221 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GvGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 221 (780)
..|+||+++++.+.+++ . . .....+.| +|++|+||||||+.+++..... ..|. .++|++.....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57899999999999988 4 2 24567777 9999999999999999876542 1233 46788877778899
Q ss_pred HHHHHHHHHhCCCCC--chhHHHHHHHHHHHHh-cCCeEEEEEeCCCCccC--------ccccCCCC---CCCC--CCcE
Q 003996 222 KIQGEIAEKLGLELS--DEAEYRRASRLYERLK-NENKILVILDNIWKHLD--------LDTVGIPF---GNDH--EGCR 285 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--------~~~l~~~l---~~~~--~gs~ 285 (780)
.++..++.+++...+ ..+.......+.+.+. .+++++||+||++.... +..+...+ +..+ .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999987543 2223344555555554 24789999999976321 22111111 1112 3445
Q ss_pred EEEEeCChHHHhhc---------CCCceEecCCCCHHHHHHHHHHHcC---CCCCCcchHHHHHHHHHHhC------CCh
Q 003996 286 LLLTARDINVLLSM---------GSKDNFLIGNLNEEEAWRLFKIMNG---DDVENCKFKSTAINVAQACG------GLP 347 (780)
Q Consensus 286 IlvTTR~~~v~~~~---------~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~l~~~~~~I~~~c~------GlP 347 (780)
||+||+.......+ .....+.+.+++.++++++|...+. ... .--.+....|++.++ |+|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcH
Confidence 88788755432111 1122399999999999999976643 211 112467889999999 999
Q ss_pred HHHHHHHHHHh------cC---CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcccC----
Q 003996 348 IALTTVARALR------NK---SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIG---- 414 (780)
Q Consensus 348 Lai~~~~~~L~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp---- 414 (780)
..+..+..... +. +.+.+..+...... ...+.-++..||++ .+.++..++.+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 76655543321 11 34455544443210 12234467789997 788888888642
Q ss_pred CCCCHHHHHHHHHhc--CcccCccchHHHHHHHHHHHHHHHHcccccccC----CCCeEEEcHHH
Q 003996 415 NSFCLIDLLRYSMGL--GIFHRVNKMEDARNKLYALVHELRDCCLLLEGD----CNETFSMHDVV 473 (780)
Q Consensus 415 ~~i~~~~Li~~W~a~--g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~~~----~~~~~~mHdlv 473 (780)
..+....+...+... .... .... ....+..+++.|.+.+++.... ..+.|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYN-VKPR--GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSC-CCCC--CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcC-CCCC--CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 456666665544210 0000 0000 1233456788999999996532 22345555443
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.52 E-value=5.7e-14 Score=148.67 Aligned_cols=199 Identities=19% Similarity=0.241 Sum_probs=151.2
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh---hhcccCCCCCCCccCCHH
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---CREVKTPSTSPNRQESQE 601 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---~~~l~~P~~~l~~~~~l~ 601 (780)
..++++.|.+.++.. ..+|..+ .++++|++|+|++|.+..++. .+++|++|++| .+.+.
T Consensus 79 ~~~~l~~L~L~~n~l---~~lp~~l-~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~------------- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPL---PQFPDQA-FRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLR------------- 140 (328)
T ss_dssp TSTTCCEEEEESSCC---SSCCSCG-GGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCC-------------
T ss_pred cccceeEEEccCCCc---hhcChhh-hhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccc-------------
Confidence 457899999998876 4678764 569999999999999998886 68899999988 11111
Q ss_pred HHhcccccccccccccccccccccccccccccccccccccccccCCCCccc---------cccCccEEeeccCccCcccc
Q 003996 602 ELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVP---------CFQSLTRLIVWGCDKLKYIF 672 (780)
Q Consensus 602 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~---------~l~~L~~L~L~~c~~l~~l~ 672 (780)
.++..+..+++|++|++++|++.. .+|..++ .+++|+.|+|++|. ++.+|
T Consensus 141 ---------------~lp~~l~~l~~L~~L~L~~n~~~~-----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp 199 (328)
T 4fcg_A 141 ---------------ALPASIASLNRLRELSIRACPELT-----ELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLP 199 (328)
T ss_dssp ---------------CCCGGGGGCTTCCEEEEEEETTCC-----CCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCC
T ss_pred ---------------cCcHHHhcCcCCCEEECCCCCCcc-----ccChhHhhccchhhhccCCCCCEEECcCCC-cCcch
Confidence 122357789999999999966542 3444443 49999999999996 77886
Q ss_pred chhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCC
Q 003996 673 SASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKI 752 (780)
Q Consensus 673 ~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L 752 (780)
..++.+++|+.|++++|. +..++. .++.+++|++|++++|.....++. ..+.+++|+.|++++|+.+
T Consensus 200 --~~l~~l~~L~~L~L~~N~-l~~l~~--------~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 200 --ASIANLQNLKSLKIRNSP-LSALGP--------AIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp --GGGGGCTTCCEEEEESSC-CCCCCG--------GGGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTC
T ss_pred --HhhcCCCCCCEEEccCCC-CCcCch--------hhccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEECCCCCch
Confidence 678999999999999765 555543 467899999999999988888854 4467999999999999999
Q ss_pred CCcCCC-----CCCcCCCCCCccccccc
Q 003996 753 TLSQND-----ENDQFGVPAQQPLLSFK 775 (780)
Q Consensus 753 ~~~~~~-----~~~~~~~~~~~~l~~~~ 775 (780)
..+|.. ..+.+.+..|.-+..+|
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 888853 12344455444444444
No 10
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.40 E-value=1.4e-12 Score=113.21 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=68.8
Q ss_pred hhHhHHHhhhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003996 16 LAPPAERQLVYLLERNYSANLENLKAEMEKLMVERTSIQRRVSEAKEKG-EDIEEKVEKWLVSANGIIDRAAKFVEHEES 94 (780)
Q Consensus 16 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~v~~wl~~l~~~~~~~ed~ld~~~~ 94 (780)
+++++.++++.++.+++. .+.++++++++|+++|++|+++|.+|+.+. ...+++++.|+++||+++||+||+||+|.+
T Consensus 2 ~v~~ll~KL~~ll~~E~~-l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFK-LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp TTCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888876776 788999999999999999999999999874 246899999999999999999999999875
Q ss_pred h
Q 003996 95 T 95 (780)
Q Consensus 95 ~ 95 (780)
.
T Consensus 81 ~ 81 (115)
T 3qfl_A 81 Q 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=3.3e-12 Score=131.19 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=111.4
Q ss_pred ceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-h-
Q 003996 507 CYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-C- 584 (780)
Q Consensus 507 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-~- 584 (780)
.+.+.+..+.+..+|... .++++.|.+.++.. ..++...|.++++|++|+|+++.+..++.-.+.++++|++| .
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKL---SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC---SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCC---CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 345555555555554322 24566666666554 24454455666666666666666665554223555666655 1
Q ss_pred -hcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEee
Q 003996 585 -REV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIV 662 (780)
Q Consensus 585 -~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L 662 (780)
+.+ .+|. ..+..+++|++|++++|.++.+. |..++.+++|+.|+|
T Consensus 94 ~n~l~~~~~----------------------------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 94 DNKLQALPI----------------------------GVFDQLVNLAELRLDRNQLKSLP-----PRVFDSLTKLTYLSL 140 (270)
T ss_dssp SSCCCCCCT----------------------------TTTTTCSSCCEEECCSSCCCCCC-----TTTTTTCTTCCEEEC
T ss_pred CCcCCcCCH----------------------------hHcccccCCCEEECCCCccCeeC-----HHHhCcCcCCCEEEC
Confidence 111 1111 12455677777777777766432 223566777888888
Q ss_pred ccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccc
Q 003996 663 WGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALK 742 (780)
Q Consensus 663 ~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~ 742 (780)
++|. ++.++ ...+..+++|+.|+++++. ++.++. ..+..+++|++|+|+++ +++.++... ...+++|+
T Consensus 141 s~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~ 208 (270)
T 2o6q_A 141 GYNE-LQSLP-KGVFDKLTSLKELRLYNNQ-LKRVPE-------GAFDKLTELKTLKLDNN-QLKRVPEGA-FDSLEKLK 208 (270)
T ss_dssp CSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCC
T ss_pred CCCc-CCccC-HhHccCCcccceeEecCCc-CcEeCh-------hHhccCCCcCEEECCCC-cCCcCCHHH-hccccCCC
Confidence 7775 66653 2235677778888777543 444332 13455677777877776 466664322 24567777
Q ss_pred eeecccCC
Q 003996 743 NLVACNCD 750 (780)
Q Consensus 743 ~L~i~~C~ 750 (780)
.|++.++|
T Consensus 209 ~L~l~~N~ 216 (270)
T 2o6q_A 209 MLQLQENP 216 (270)
T ss_dssp EEECCSSC
T ss_pred EEEecCCC
Confidence 77776654
No 12
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=2.2e-12 Score=129.85 Aligned_cols=79 Identities=11% Similarity=0.297 Sum_probs=48.2
Q ss_pred hhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecC-CCcCcccccccCCChh
Q 003996 503 ALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTR-IEFGQLRSLTLGKLPK 579 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~-~~~~~L~~L~i~~L~~ 579 (780)
.+..++++.+.++.+..++.. ..+++|++|.+.++... ..+++..|.++++|++|+|++ +.+..++.-.++++++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 345677777777777666542 35777777777766421 356665667777777777776 6666555322334444
Q ss_pred HHHh
Q 003996 580 VTRF 583 (780)
Q Consensus 580 L~~L 583 (780)
|++|
T Consensus 107 L~~L 110 (239)
T 2xwt_C 107 LKFL 110 (239)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 4443
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=4.5e-12 Score=140.61 Aligned_cols=231 Identities=19% Similarity=0.185 Sum_probs=138.3
Q ss_pred cccccCCchhhhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccc
Q 003996 493 EAVWEWPDEDALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLR 570 (780)
Q Consensus 493 ~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~ 570 (780)
..+...|. ..+..+++|.+.++.+..++.. ..+++|+.|.+.++.. ..+++..|.++++|++|+|++|.+..++
T Consensus 64 ~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 64 RGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI---RQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc---CCcChhhccCcccCCEEECCCCcCCccC
Confidence 33444442 3346889999999988776432 4789999999998876 3566677899999999999999988877
Q ss_pred ccccCCChhHHHh---hhcc-cCCCCCCCccCCHHHH-hccccccccccccccccccccccccccccccccccccccccc
Q 003996 571 SLTLGKLPKVTRF---CREV-KTPSTSPNRQESQEEL-TASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYN 645 (780)
Q Consensus 571 ~L~i~~L~~L~~L---~~~l-~~P~~~l~~~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~ 645 (780)
.-.+++|++|++| .+.+ .+|...+....+|+.| +..+..+. .-....+..+++|++|+|++|+++.+
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~---- 211 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNLGMCNIKDM---- 211 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCTTCCEEECTTSCCSSC----
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc----ccChhhccCCCCCCEEECCCCccccc----
Confidence 6447788888888 1111 1133222111111111 00001110 00011345567777777777766543
Q ss_pred CCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCC
Q 003996 646 QLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPE 725 (780)
Q Consensus 646 ~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 725 (780)
| .+..+++|+.|+|++|. +..++ ...+..+++|+.|+++++. +..++. ..+..+++|++|+|+++ +
T Consensus 212 --~-~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~ 277 (452)
T 3zyi_A 212 --P-NLTPLVGLEELEMSGNH-FPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIER-------NAFDGLASLVELNLAHN-N 277 (452)
T ss_dssp --C-CCTTCTTCCEEECTTSC-CSEEC-GGGGTTCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECCSS-C
T ss_pred --c-cccccccccEEECcCCc-CcccC-cccccCccCCCEEEeCCCc-CceECH-------HHhcCCCCCCEEECCCC-c
Confidence 2 15566777777777775 55442 2456677777777777543 333322 13456677777777776 4
Q ss_pred ccccCCCCCccCCcccceeecccCC
Q 003996 726 LRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 726 L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
+..++... ...+++|+.|++.++|
T Consensus 278 l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 LSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSCCCTTS-STTCTTCCEEECCSSC
T ss_pred CCccChHH-hccccCCCEEEccCCC
Confidence 66664322 2456777777776665
No 14
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.7e-11 Score=130.24 Aligned_cols=286 Identities=14% Similarity=0.131 Sum_probs=171.7
Q ss_pred cccccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC-CCEEEEEEeCCCCCHHHHHHHHH
Q 003996 154 YEAFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKL-FDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
+..|+||+++++.+.+++. ......+.|+|++|+||||||+.+++....... -..++|++.....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999887 344678999999999999999999998754311 13567888776667788888888
Q ss_pred HHhCCCCCc--hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------CccccCCCCCC-CCCCcEEEEEeCChHHHhh
Q 003996 229 EKLGLELSD--EAEYRRASRLYERLKN-ENKILVILDNIWKHL------DLDTVGIPFGN-DHEGCRLLLTARDINVLLS 298 (780)
Q Consensus 229 ~~l~~~~~~--~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~IlvTTR~~~v~~~ 298 (780)
.+++..... .+.......+.+.+.. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 887654322 2234445566666654 348999999996532 11112111100 2335567888886543221
Q ss_pred cC-------CCceEecCCCCHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHHhC---CChHHHHHHHHHH-h-----c--
Q 003996 299 MG-------SKDNFLIGNLNEEEAWRLFKIMNGD-DVENCKFKSTAINVAQACG---GLPIALTTVARAL-R-----N-- 359 (780)
Q Consensus 299 ~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPLai~~~~~~L-~-----~-- 359 (780)
+. ....+.+++++.++..+++.+.+.. .....-..++.+.|++.++ |.|..+..+.... . +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 1147999999999999999986531 1011122456677888887 9998444333222 1 1
Q ss_pred C-CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcc-c--C-CCCCHHHHHHHHH--h--cC
Q 003996 360 K-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSL-I--G-NSFCLIDLLRYSM--G--LG 430 (780)
Q Consensus 360 ~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~-f--p-~~i~~~~Li~~W~--a--~g 430 (780)
. +.+.+..+++... ...+.-.+..+|.. .+..+..++. + . ..+....+.+... + .|
T Consensus 259 ~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 5566666555421 22455667788886 4555544442 1 1 2344444433221 1 12
Q ss_pred cccCccchHHHHHHHHHHHHHHHHcccccc
Q 003996 431 IFHRVNKMEDARNKLYALVHELRDCCLLLE 460 (780)
Q Consensus 431 ~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~ 460 (780)
. .. - ....+..+++.|...|++..
T Consensus 324 ~-~~-~----~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 V-EA-V----TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-CC-C----CHHHHHHHHHHHHHHTSEEE
T ss_pred C-CC-C----CHHHHHHHHHHHHhCCCEEE
Confidence 1 00 0 12345567888999999954
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.33 E-value=4.3e-12 Score=141.92 Aligned_cols=189 Identities=19% Similarity=0.216 Sum_probs=116.0
Q ss_pred ccccCCchhhhccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 494 AVWEWPDEDALKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 494 ~~~~~~~~~~~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
.+...|. ..+..++++.+.++.+..++. ...+++|++|.+.++... .+++..|.++++|++|+|++|.+..++.
T Consensus 22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCc
Confidence 3334443 335688999999998877643 247899999999988653 5555668999999999999999988776
Q ss_pred cccCCChhHHHh-hh--cc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCC
Q 003996 572 LTLGKLPKVTRF-CR--EV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQL 647 (780)
Q Consensus 572 L~i~~L~~L~~L-~~--~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l 647 (780)
-.+++|++|++| .. .+ ..+. ..+..+++|++|++++|.+..+.
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~----------------------------~~~~~l~~L~~L~l~~n~l~~~~----- 144 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLD----------------------------YMFQDLYNLKSLEVGDNDLVYIS----- 144 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECT----------------------------TTTTTCTTCCEEEECCTTCCEEC-----
T ss_pred ccccCCCCCCEEECCCCccccCCh----------------------------hHccccccCCEEECCCCccceeC-----
Confidence 447888888888 11 11 1111 13445666666666666555432
Q ss_pred CCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcc
Q 003996 648 PGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELR 727 (780)
Q Consensus 648 P~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~ 727 (780)
|..+..+++|+.|+|++|. +..++ ...+..+++|+.|+++++. +..++. ..+..+++|++|++.+|+.+.
T Consensus 145 ~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-i~~~~~-------~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCN-LTSIP-TEALSHLHGLIVLRLRHLN-INAIRD-------YSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp TTSSTTCTTCCEEEEESCC-CSSCC-HHHHTTCTTCCEEEEESCC-CCEECT-------TCSCSCTTCCEEEEECCTTCC
T ss_pred hhhccCCCCCCEEECCCCc-CcccC-hhHhcccCCCcEEeCCCCc-CcEeCh-------hhcccCcccceeeCCCCcccc
Confidence 2235556666666666664 55543 2345566666666666433 222221 123445555555555555444
Q ss_pred cc
Q 003996 728 CL 729 (780)
Q Consensus 728 ~~ 729 (780)
.+
T Consensus 215 ~~ 216 (477)
T 2id5_A 215 TM 216 (477)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=4.8e-12 Score=140.42 Aligned_cols=197 Identities=19% Similarity=0.217 Sum_probs=141.2
Q ss_pred hccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
..+++.|.+..|.+..++.. ..+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..++.-.+.++++|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL---TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC---CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 45789999999988776532 4689999999998876 467888889999999999999999887765577888888
Q ss_pred Hh----hhcccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccC
Q 003996 582 RF----CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQS 656 (780)
Q Consensus 582 ~L----~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~ 656 (780)
+| +..++. |...+....+|+.|--+ ++.....+.+..+++|+.|+|++|.++.+ .|.++..+++
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~------~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~ 243 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLG------MCNIKDMPNLTPLVGLEELEMSGNHFPEI-----RPGSFHGLSS 243 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECT------TSCCSSCCCCTTCTTCCEEECTTSCCSEE-----CGGGGTTCTT
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECC------CCcccccccccccccccEEECcCCcCccc-----CcccccCccC
Confidence 77 222222 33222111111111000 11111234577889999999999998864 3446888999
Q ss_pred ccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 657 LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 657 L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
|+.|+|++|. +..++ ...+..+++|+.|+|+++ .++.++. ..+..+++|++|+|.++|
T Consensus 244 L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQ-VSLIE-RNAFDGLASLVELNLAHN-NLSSLPH-------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSS-CCSCCCT-------TSSTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCc-CceEC-HHHhcCCCCCCEEECCCC-cCCccCh-------HHhccccCCCEEEccCCC
Confidence 9999999997 66663 256788999999999976 4665553 245678999999999886
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.32 E-value=1.3e-11 Score=137.15 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=63.1
Q ss_pred eccccccCCchhhhccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc
Q 003996 491 RNEAVWEWPDEDALKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 491 ~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~ 568 (780)
.+.++...|. .+..++++.+.++.+..++. ...+++|++|.+.++... ..+++..|.++++|++|+|++|.+..
T Consensus 18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 18 INRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp CSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCc
Confidence 3334445554 45789999999998876632 247899999999887654 46777778899999999999988776
Q ss_pred ccccccCCChhHHHh
Q 003996 569 LRSLTLGKLPKVTRF 583 (780)
Q Consensus 569 L~~L~i~~L~~L~~L 583 (780)
+..-.+++|++|++|
T Consensus 94 ~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 94 LETGAFNGLANLEVL 108 (455)
T ss_dssp ECTTTTTTCTTCCEE
T ss_pred cChhhccCcccCCEE
Confidence 422245566666655
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=7.4e-12 Score=138.36 Aligned_cols=230 Identities=21% Similarity=0.207 Sum_probs=140.5
Q ss_pred ccccCCchhhhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 494 AVWEWPDEDALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 494 ~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
.+...|. ..+..++.+.+..+.+..++.. ..+++|++|.+.++.. ..++...|.++++|++|+|++|.+..++.
T Consensus 54 ~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 54 NLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI---RTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC---CEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC---CccChhhccCCccCCEEECCCCcCCeeCH
Confidence 3444443 3346789999999988776532 4789999999998876 46777778999999999999999988776
Q ss_pred cccCCChhHHHh---hhccc-CCCCCCCccCCHHHH-hcccccccccccccccccccccccccccccccccccccccccC
Q 003996 572 LTLGKLPKVTRF---CREVK-TPSTSPNRQESQEEL-TASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQ 646 (780)
Q Consensus 572 L~i~~L~~L~~L---~~~l~-~P~~~l~~~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 646 (780)
-.+.+|++|++| .+.+. +|...+....+|+.| +..+..+. .-....+..+++|++|++++|+++.+
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~----- 200 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS----YISEGAFEGLSNLRYLNLAMCNLREI----- 200 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCSSCCEEECTTSCCSSC-----
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc----eeCcchhhcccccCeecCCCCcCccc-----
Confidence 457888888888 11121 133222111111111 00000000 00011345567777777777776643
Q ss_pred CCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCc
Q 003996 647 LPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPEL 726 (780)
Q Consensus 647 lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L 726 (780)
| .+..+++|+.|+|++|. +..++ ...+..+++|+.|+++++. ++.++. ..+..+++|++|+|+++ ++
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l 267 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNH-LSAIR-PGSFQGLMHLQKLWMIQSQ-IQVIER-------NAFDNLQSLVEINLAHN-NL 267 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTCC-CCEECT-------TSSTTCTTCCEEECTTS-CC
T ss_pred -c-ccCCCcccCEEECCCCc-cCccC-hhhhccCccCCEEECCCCc-eeEECh-------hhhcCCCCCCEEECCCC-CC
Confidence 2 15566777777777774 55552 2456677777777777543 443332 23456777777777775 46
Q ss_pred cccCCCCCccCCcccceeecccCC
Q 003996 727 RCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 727 ~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
+.++... ...+++|+.|++.++|
T Consensus 268 ~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTT-TSSCTTCCEEECCSSC
T ss_pred CccChhH-hccccCCCEEEcCCCC
Confidence 6664322 2456777777776655
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=4.8e-12 Score=131.14 Aligned_cols=200 Identities=18% Similarity=0.192 Sum_probs=139.7
Q ss_pred hhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCC-cCcccccccCCChh
Q 003996 503 ALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIE-FGQLRSLTLGKLPK 579 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~-~~~L~~L~i~~L~~ 579 (780)
.+..++++.+.++.+..++.. ..+++|++|.+.++.. ..+++..|.++++|++|+|++|. +..+..-.++++++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL---ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc---ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 356788899988888776542 4688899999987765 34555567888999999999886 77664335777777
Q ss_pred HHHh-hh--cc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcccccc
Q 003996 580 VTRF-CR--EV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQ 655 (780)
Q Consensus 580 L~~L-~~--~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~ 655 (780)
|++| .. .+ ..| ...+..+++|++|++++|.++.+. |..++.++
T Consensus 107 L~~L~l~~n~l~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~ 153 (285)
T 1ozn_A 107 LHTLHLDRCGLQELG----------------------------PGLFRGLAALQYLYLQDNALQALP-----DDTFRDLG 153 (285)
T ss_dssp CCEEECTTSCCCCCC----------------------------TTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCT
T ss_pred CCEEECCCCcCCEEC----------------------------HhHhhCCcCCCEEECCCCcccccC-----HhHhccCC
Confidence 7777 11 11 111 124567888999999988877432 23467788
Q ss_pred CccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCc
Q 003996 656 SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHT 735 (780)
Q Consensus 656 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~ 735 (780)
+|+.|+|++|. ++.++ ...+..+++|+.|+++++. +..+.. ..+..+++|++|+++++ ++..++.. ..
T Consensus 154 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~-~~ 221 (285)
T 1ozn_A 154 NLTHLFLHGNR-ISSVP-ERAFRGLHSLDRLLLHQNR-VAHVHP-------HAFRDLGRLMTLYLFAN-NLSALPTE-AL 221 (285)
T ss_dssp TCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECT-------TTTTTCTTCCEEECCSS-CCSCCCHH-HH
T ss_pred CccEEECCCCc-ccccC-HHHhcCccccCEEECCCCc-ccccCH-------hHccCcccccEeeCCCC-cCCcCCHH-Hc
Confidence 99999999885 77664 2346788999999998765 443322 24567889999999886 46666321 13
Q ss_pred cCCcccceeecccCC
Q 003996 736 SEWPALKNLVACNCD 750 (780)
Q Consensus 736 ~~~p~L~~L~i~~C~ 750 (780)
..+++|+.|+++++|
T Consensus 222 ~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 222 APLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCcccCEEeccCCC
Confidence 568889999988776
No 20
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=3e-11 Score=130.97 Aligned_cols=283 Identities=12% Similarity=0.071 Sum_probs=171.5
Q ss_pred ccccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccC----C--CCEEEEEEeCCCC-CHHHH
Q 003996 155 EAFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENK----L--FDRVVFSEVSQTP-DIKKI 223 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~~i 223 (780)
..++||+++++.+.+++. ....+.+.|+|++|+||||+|+.+++...... . ....+|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 578999999999987775 34457899999999999999999998764321 1 2357788877766 88888
Q ss_pred HHHHHHHh-CCCCC--chhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--cccc-CCCCCCCCCCcEEEEEeCChHHH-
Q 003996 224 QGEIAEKL-GLELS--DEAEYRRASRLYERLKNENKILVILDNIWKHLD--LDTV-GIPFGNDHEGCRLLLTARDINVL- 296 (780)
Q Consensus 224 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~IlvTTR~~~v~- 296 (780)
+..++.++ +.... ..........+.+.+...+ .+||+||++.... +... ...+.....+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 89988887 33221 2223344566777776644 4999999975421 1111 11111111577888898865211
Q ss_pred ---hh--cCCCceEecCCCCHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHHhC---CChH-HHHHHHHHHh------cC
Q 003996 297 ---LS--MGSKDNFLIGNLNEEEAWRLFKIMNGD-DVENCKFKSTAINVAQACG---GLPI-ALTTVARALR------NK 360 (780)
Q Consensus 297 ---~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~L~------~~ 360 (780)
.. ......+.+++++.++..+++...+.. .....--.+..+.|++.++ |.|. |+..+-.+.. ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 11 011238999999999999999987531 1011111245678888888 9887 4444433331 12
Q ss_pred CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcccCCCCCHHHHHH--HHHhcCcccCccch
Q 003996 361 SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIGNSFCLIDLLR--YSMGLGIFHRVNKM 438 (780)
Q Consensus 361 ~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~Li~--~W~a~g~i~~~~~~ 438 (780)
+.+.+..+++... ...+..++..|+++ .+..+..++. . .....+.+ .-+++.+-....
T Consensus 259 ~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~-~--~~~~~~~~~~~~~~~~~g~~~~-- 318 (384)
T 2qby_B 259 RKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIE-S--EDVMSAHKMYTDLCNKFKQKPL-- 318 (384)
T ss_dssp CHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHT-C--CBHHHHHHHHHHHHHHTTCCCC--
T ss_pred CHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHH-h--cccChHHHHHHHHHHHcCCCCC--
Confidence 6777777766531 13456677888886 4555554554 1 11012211 011111100111
Q ss_pred HHHHHHHHHHHHHHHHcccccc
Q 003996 439 EDARNKLYALVHELRDCCLLLE 460 (780)
Q Consensus 439 ~~~~~~~~~~i~~L~~~~ll~~ 460 (780)
....+.++++.|...|++..
T Consensus 319 --~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 319 --SYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp --CHHHHHHHHHHHHHTTSEEE
T ss_pred --CHHHHHHHHHHHHhCCCEEE
Confidence 22445668889999999964
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=6.6e-12 Score=131.55 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=147.2
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
...+++++.+.++.+..++....+++|+.|.+.++... .+++ +.++++|++|+|++|.+..++ .++++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~---~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT---DLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC---CChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence 35689999999998888776667999999999988763 5555 799999999999999998876 4778888887
Q ss_pred h-hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 583 F-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 583 L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
| .....+ ...+.+..+++|++|++++|.+..+.. ++.+++|+.|+
T Consensus 112 L~l~~n~l---------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~ 157 (308)
T 1h6u_A 112 LDLTSTQI---------------------------TDVTPLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLS 157 (308)
T ss_dssp EECTTSCC---------------------------CCCGGGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEE
T ss_pred EECCCCCC---------------------------CCchhhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEE
Confidence 7 111111 011236778999999999988875422 67789999999
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCccc
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPAL 741 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L 741 (780)
+++|. +..++ .+..+++|+.|+++++. ++.++ .+..+++|++|+++++ .+..+++ ...+|+|
T Consensus 158 l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L 219 (308)
T 1h6u_A 158 IGNAQ-VSDLT---PLANLSKLTTLKADDNK-ISDIS---------PLASLPNLIEVHLKNN-QISDVSP---LANTSNL 219 (308)
T ss_dssp CCSSC-CCCCG---GGTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTC
T ss_pred ccCCc-CCCCh---hhcCCCCCCEEECCCCc-cCcCh---------hhcCCCCCCEEEccCC-ccCcccc---ccCCCCC
Confidence 99996 77774 37889999999998754 44443 2567899999999997 4666642 4678999
Q ss_pred ceeecccCCCCCCcC
Q 003996 742 KNLVACNCDKITLSQ 756 (780)
Q Consensus 742 ~~L~i~~C~~L~~~~ 756 (780)
+.|++++|+ ++..|
T Consensus 220 ~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 220 FIVTLTNQT-ITNQP 233 (308)
T ss_dssp CEEEEEEEE-EECCC
T ss_pred CEEEccCCe-eecCC
Confidence 999998887 55444
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=6.2e-12 Score=138.99 Aligned_cols=197 Identities=15% Similarity=0.203 Sum_probs=140.2
Q ss_pred hccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
..+++.|.+..|.+..++.. ..+++|++|.+.++.. ..++...|.++++|++|+|++|.+..++.-.+.++++|+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL---TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC---SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC---CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 35789999999988766532 4689999999998876 467777789999999999999998887765677888888
Q ss_pred Hh----hhcccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccC
Q 003996 582 RF----CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQS 656 (780)
Q Consensus 582 ~L----~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~ 656 (780)
+| +..+.. |...+....+|+.|-- .++....++.+..+++|+.|+|++|.++.+ .|..+..+++
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~ 232 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNL------AMCNLREIPNLTPLIKLDELDLSGNHLSAI-----RPGSFQGLMH 232 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEEC------TTSCCSSCCCCTTCSSCCEEECTTSCCCEE-----CTTTTTTCTT
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecC------CCCcCccccccCCCcccCEEECCCCccCcc-----ChhhhccCcc
Confidence 77 222222 3322211111222100 011111234577889999999999988864 3445888999
Q ss_pred ccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 657 LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 657 L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
|+.|+|+++. ++.++ ...+..+++|+.|+|+++ .++.++. ..+..+++|+.|+|.++|
T Consensus 233 L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQ-IQVIE-RNAFDNLQSLVEINLAHN-NLTLLPH-------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTCC-CCEEC-TTSSTTCTTCCEEECTTS-CCCCCCT-------TTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCc-eeEEC-hhhhcCCCCCCEEECCCC-CCCccCh-------hHhccccCCCEEEcCCCC
Confidence 9999999996 77663 256788999999999975 4665553 245678999999999886
No 23
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=2.5e-10 Score=123.85 Aligned_cols=284 Identities=14% Similarity=0.118 Sum_probs=177.6
Q ss_pred ccccchHHHHHHHHHHhhc----CCeE--EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD----ANVS--IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
..++||+++++.+.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++.+...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999988863 3334 899999999999999999998876431 13567888788888889999999
Q ss_pred HHhCCCCCc--hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc--CccccCCCCCC-CC---CCcEEEEEeCChHHHhhc
Q 003996 229 EKLGLELSD--EAEYRRASRLYERLKN-ENKILVILDNIWKHL--DLDTVGIPFGN-DH---EGCRLLLTARDINVLLSM 299 (780)
Q Consensus 229 ~~l~~~~~~--~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~~l~~~l~~-~~---~gs~IlvTTR~~~v~~~~ 299 (780)
..++..... .........+.+.+.. +++.+||+|+++... .+..+...+.. .. .+..||++|+.......+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 998764332 2333444455555543 458999999997652 22222111111 11 366788888766433322
Q ss_pred C-------CCceEecCCCCHHHHHHHHHHHcCCC-CCCcchHHHHHHHHHHh---------CCChHHHHHHHHHHh----
Q 003996 300 G-------SKDNFLIGNLNEEEAWRLFKIMNGDD-VENCKFKSTAINVAQAC---------GGLPIALTTVARALR---- 358 (780)
Q Consensus 300 ~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~l~~~~~~I~~~c---------~GlPLai~~~~~~L~---- 358 (780)
. ....+.+.+++.++..+++...+... ....--.+....|++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 12369999999999999998876420 01112246778899999 788765554433221
Q ss_pred --cC---CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhcccC----C-CCCHHHHHHHHHh
Q 003996 359 --NK---SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCSLIG----N-SFCLIDLLRYSMG 428 (780)
Q Consensus 359 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp----~-~i~~~~Li~~W~a 428 (780)
+. +.+....+..... ...+.-.+..|+.+ .+.++..++.+. . .+....+...+-.
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 4444444444422 12234456778886 566666555432 1 4556666554432
Q ss_pred ----cCcccCccchHHHHHHHHHHHHHHHHcccccc
Q 003996 429 ----LGIFHRVNKMEDARNKLYALVHELRDCCLLLE 460 (780)
Q Consensus 429 ----~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~ 460 (780)
.|.. .. ....+..++++|.+.+++..
T Consensus 321 ~~~~~~~~-~~-----~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 321 VCEEYGER-PR-----VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHTTCC-CC-----CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHcCCC-CC-----CHHHHHHHHHHHHhCCCeEE
Confidence 1211 00 12446678999999999965
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=1.1e-11 Score=127.73 Aligned_cols=205 Identities=17% Similarity=0.238 Sum_probs=148.6
Q ss_pred hhccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhH
Q 003996 503 ALKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L 580 (780)
.+..++++.+.++.+..++. ...+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..+..-.++++++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 34579999999998877664 34689999999998865 46677678999999999999999887664357788888
Q ss_pred HHh-hh--cc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccC
Q 003996 581 TRF-CR--EV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQS 656 (780)
Q Consensus 581 ~~L-~~--~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~ 656 (780)
++| .. .+ ..+. ..+..+++|++|++++|.+..+ .+|.+++.+++
T Consensus 103 ~~L~l~~n~l~~~~~----------------------------~~~~~l~~L~~L~l~~n~l~~~----~l~~~~~~l~~ 150 (276)
T 2z62_A 103 QKLVAVETNLASLEN----------------------------FPIGHLKTLKELNVAHNLIQSF----KLPEYFSNLTN 150 (276)
T ss_dssp CEEECTTSCCCCSTT----------------------------CCCTTCTTCCEEECCSSCCCCC----CCCGGGGGCTT
T ss_pred cEEECCCCCccccCc----------------------------hhcccCCCCCEEECcCCcccee----cCchhhccCCC
Confidence 877 11 11 1111 1366789999999999888642 35667899999
Q ss_pred ccEEeeccCccCccccchhhHhhccCCc----EEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCC
Q 003996 657 LTRLIVWGCDKLKYIFSASTIQSLEQLQ----HLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPG 732 (780)
Q Consensus 657 L~~L~L~~c~~l~~l~~~~~l~~L~~L~----~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~ 732 (780)
|+.|++++|. +..++ ...+..+++|+ .|+++++. +..++. .....++|++|+++++. ++.++..
T Consensus 151 L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~--------~~~~~~~L~~L~L~~n~-l~~~~~~ 218 (276)
T 2z62_A 151 LEHLDLSSNK-IQSIY-CTDLRVLHQMPLLNLSLDLSLNP-MNFIQP--------GAFKEIRLKELALDTNQ-LKSVPDG 218 (276)
T ss_dssp CCEEECCSSC-CCEEC-GGGGHHHHTCTTCCEEEECCSSC-CCEECT--------TSSCSCCEEEEECCSSC-CSCCCTT
T ss_pred CCEEECCCCC-CCcCC-HHHhhhhhhccccceeeecCCCc-ccccCc--------cccCCCcccEEECCCCc-eeecCHh
Confidence 9999999996 76663 23555666666 78888643 544443 22344589999999974 7888543
Q ss_pred CCccCCcccceeecc------cCCCCCCc
Q 003996 733 MHTSEWPALKNLVAC------NCDKITLS 755 (780)
Q Consensus 733 ~~~~~~p~L~~L~i~------~C~~L~~~ 755 (780)
. ...+++|+.|+++ .|++++.+
T Consensus 219 ~-~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 219 I-FDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp T-TTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred H-hcccccccEEEccCCcccccCCchHHH
Confidence 2 3568999999998 56666543
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.2e-11 Score=128.07 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=146.9
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh----
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---- 583 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---- 583 (780)
+.+....+.+..+|.. -.++++.|.+.++.. ..++...|.++++|++|+|+++.+..+..-.++++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI---SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcC---CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4566666666666643 357999999998876 46777778999999999999999987644367888888888
Q ss_pred hhcccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEee
Q 003996 584 CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIV 662 (780)
Q Consensus 584 ~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L 662 (780)
+..+.. + ...+..+++|++|+++++.+..+ .|..+..+++|+.|++
T Consensus 90 n~~l~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 90 NAQLRSVD----------------------------PATFHGLGRLHTLHLDRCGLQEL-----GPGLFRGLAALQYLYL 136 (285)
T ss_dssp CTTCCCCC----------------------------TTTTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEEC
T ss_pred CCCccccC----------------------------HHHhcCCcCCCEEECCCCcCCEE-----CHhHhhCCcCCCEEEC
Confidence 111111 1 12466789999999999988753 3445788999999999
Q ss_pred ccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccc
Q 003996 663 WGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALK 742 (780)
Q Consensus 663 ~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~ 742 (780)
+++. ++.++ ...+..+++|+.|+++++ .++.++. ..+..+++|++|+++++. +..+.. .....+++|+
T Consensus 137 ~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 204 (285)
T 1ozn_A 137 QDNA-LQALP-DDTFRDLGNLTHLFLHGN-RISSVPE-------RAFRGLHSLDRLLLHQNR-VAHVHP-HAFRDLGRLM 204 (285)
T ss_dssp CSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCEECT-------TTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCC
T ss_pred CCCc-ccccC-HhHhccCCCccEEECCCC-cccccCH-------HHhcCccccCEEECCCCc-ccccCH-hHccCccccc
Confidence 9996 77764 235788999999999976 3555543 135678999999999975 565532 2335789999
Q ss_pred eeecccCCCCCCcC
Q 003996 743 NLVACNCDKITLSQ 756 (780)
Q Consensus 743 ~L~i~~C~~L~~~~ 756 (780)
.|++++|. ++.+|
T Consensus 205 ~L~l~~n~-l~~~~ 217 (285)
T 1ozn_A 205 TLYLFANN-LSALP 217 (285)
T ss_dssp EEECCSSC-CSCCC
T ss_pred EeeCCCCc-CCcCC
Confidence 99999884 55444
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=131.40 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=148.0
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
...++++.+.++.+..++. ...+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..++.-.++++++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI---NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc---CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 3578888888888877665 34688888888887765 355556678888888888888888876653367788888
Q ss_pred Hh---hhcc-cCCC-CCCCccCCHHHH-hcccccccccccccccccccccccccccccccccccccccccCCCCcccccc
Q 003996 582 RF---CREV-KTPS-TSPNRQESQEEL-TASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQ 655 (780)
Q Consensus 582 ~L---~~~l-~~P~-~~l~~~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~ 655 (780)
+| .+.+ .+|. ..+.....++.| +.....+. .-....+..+++|++|++++|.+..+ .|.+++.++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~ 198 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----KIQRKDFAGLTFLEELEIDASDLQSY-----EPKSLKSIQ 198 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----EECTTTTTTCCEEEEEEEEETTCCEE-----CTTTTTTCS
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----ccCHHHccCCCCCCEEECCCCCcCcc-----CHHHHhccc
Confidence 77 1112 2233 122111111111 01100000 00123466788999999999887743 355688889
Q ss_pred CccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcc-------------------c-----ccccccc
Q 003996 656 SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRT-------------------D-----QVTAYFV 711 (780)
Q Consensus 656 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~-------------------~-----~~~~~~~ 711 (780)
+|++|+++++. +..++ ...+..+++|+.|+++++. ++.++...-. + ....+..
T Consensus 199 ~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 199 NVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp EEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 99999999987 66664 2345568999999998764 3332211000 0 0012456
Q ss_pred cCcccEEeccCCCCccccCCCCCccCCcccceeecccCCC
Q 003996 712 FPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDK 751 (780)
Q Consensus 712 fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 751 (780)
+++|++|+++++ +++.++... ...+++|++|++.+||-
T Consensus 276 l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 276 ISGLLELEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred ccCCCEEECCCC-CCCccCHHH-HhcCCCCCEEEeeCCCc
Confidence 889999999987 577775432 25789999999988873
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=1.7e-11 Score=130.97 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
+..+++|++|+++++.+..+. . +..+++|+.|++++|. +..+ +.+..+++|+.|++++|. +..++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~------~-~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~~--- 281 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLS------P-LANLSQLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDIS--- 281 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCCG---
T ss_pred hhcCCcCCEEEccCCccCCCc------c-hhcCCCCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCCh---
Confidence 556778888888887766432 1 5667788888888875 6655 456778888888888663 44332
Q ss_pred cccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 702 RTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
.+..+++|++|++++|+ +.... ......+|+|+.|++++|+ ++.++
T Consensus 282 ------~~~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 282 ------VLNNLSQLNSLFLNNNQ-LGNED-MEVIGGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp ------GGGGCTTCSEEECCSSC-CCGGG-HHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred ------hhcCCCCCCEEECcCCc-CCCcC-hhHhhccccCCEEEccCCc-ccccc
Confidence 34567888888888774 33331 1122457788888888887 55443
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=1.1e-11 Score=129.95 Aligned_cols=233 Identities=16% Similarity=0.117 Sum_probs=141.3
Q ss_pred cccCCchhhhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccccc
Q 003996 495 VWEWPDEDALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSL 572 (780)
Q Consensus 495 ~~~~~~~~~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L 572 (780)
+...|. ..+..++++.+.++.+..++.. ..+++|++|.+.++.......++.. +..+++|++|+|++|.+..++.
T Consensus 19 l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~- 95 (306)
T 2z66_A 19 LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSS- 95 (306)
T ss_dssp CSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEE-
T ss_pred cccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChh-
Confidence 334443 3346899999999998887764 4789999999998765311112343 5679999999999999887765
Q ss_pred ccCCChhHHHh----hhcccCCC-CCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCC
Q 003996 573 TLGKLPKVTRF----CREVKTPS-TSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQL 647 (780)
Q Consensus 573 ~i~~L~~L~~L----~~~l~~P~-~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~l 647 (780)
.+.++++|++| +.....|. ..+.....++.|--+...+. ......+..+++|++|++++|.+.. ..+
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~----~~~ 167 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQE----NFL 167 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE----ECSTTTTTTCTTCCEEECTTCEEGG----GEE
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC----ccchhhcccCcCCCEEECCCCcccc----ccc
Confidence 57788888887 11112221 11111111111100000000 0112235567788888888776653 124
Q ss_pred CCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcc
Q 003996 648 PGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELR 727 (780)
Q Consensus 648 P~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~ 727 (780)
|.++..+++|+.|++++|. +..++ ...+..+++|+.|+++++. +..++. ..+..+++|++|+++++. +.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~-l~ 236 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQ-LEQLS-PTAFNSLSSLQVLNMSHNN-FFSLDT-------FPYKCLNSLQVLDYSLNH-IM 236 (306)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSC-CSBCCS-------GGGTTCTTCCEEECTTSC-CC
T ss_pred hhHHhhCcCCCEEECCCCC-cCCcC-HHHhcCCCCCCEEECCCCc-cCccCh-------hhccCcccCCEeECCCCC-Cc
Confidence 5557777888888888885 66552 2456778888888887654 433322 134567888888888874 44
Q ss_pred ccCCCCCccCCc-ccceeecccCC
Q 003996 728 CLYPGMHTSEWP-ALKNLVACNCD 750 (780)
Q Consensus 728 ~~~~~~~~~~~p-~L~~L~i~~C~ 750 (780)
.... .....+| +|+.|++++++
T Consensus 237 ~~~~-~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKK-QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSS-SSCCCCCTTCCEEECTTCC
T ss_pred ccCH-HHHHhhhccCCEEEccCCC
Confidence 4422 1234554 78888887765
No 29
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=1.6e-10 Score=125.15 Aligned_cols=281 Identities=14% Similarity=0.140 Sum_probs=174.8
Q ss_pred ccccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhcc----CCCCEEEEEEeCCCCCHHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASEN----KLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
..++||+++++.+.+++. ....+.+.|+|++|+||||+|+.+++..... ..-...+|++.....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 578999999999999885 2456789999999999999999999876432 11134678888888889999999
Q ss_pred HHHHhCCCCCc--hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC---c-ccc---CCCCCCC--CCCcEEEEEeCChH
Q 003996 227 IAEKLGLELSD--EAEYRRASRLYERLKN-ENKILVILDNIWKHLD---L-DTV---GIPFGND--HEGCRLLLTARDIN 294 (780)
Q Consensus 227 i~~~l~~~~~~--~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---~-~~l---~~~l~~~--~~gs~IlvTTR~~~ 294 (780)
++.+++..... .+.......+.+.+.. +++.+||+||++.... . +.+ ....... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99999765432 2234445666666643 4589999999975421 1 111 1111110 33556777777652
Q ss_pred H--------HhhcCCCceEecCCCCHHHHHHHHHHHcCC----CCCCcchHHHHHHHHHHhC---CChHHH-HHHHHHHh
Q 003996 295 V--------LLSMGSKDNFLIGNLNEEEAWRLFKIMNGD----DVENCKFKSTAINVAQACG---GLPIAL-TTVARALR 358 (780)
Q Consensus 295 v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~l~~~~~~I~~~c~---GlPLai-~~~~~~L~ 358 (780)
. ...+. ...+.+++++.++..+++...+.. ...++ +..+.|++.++ |.|..+ ..+..+..
T Consensus 179 ~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 179 FVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2 11111 147889999999999999987531 11222 35667888888 999433 33332221
Q ss_pred -----c--C-CHHHHHHHHHHhcCCCCCCcCCCCccccchHHhhhccCChhhHHHHHHhhc-ccC--CCCCHHHHHHHHH
Q 003996 359 -----N--K-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFQLCS-LIG--NSFCLIDLLRYSM 427 (780)
Q Consensus 359 -----~--~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s-~fp--~~i~~~~Li~~W~ 427 (780)
+ . +.+.+..+++... ...+.-++..|+.+ .+..+...+ ++. ..+....+.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 6677776666531 12355677889987 454444444 343 3455554444321
Q ss_pred ----hcCcccCccchHHHHHHHHHHHHHHHHcccccc
Q 003996 428 ----GLGIFHRVNKMEDARNKLYALVHELRDCCLLLE 460 (780)
Q Consensus 428 ----a~g~i~~~~~~~~~~~~~~~~i~~L~~~~ll~~ 460 (780)
..|. .. .+...+.++++.|...|++..
T Consensus 320 ~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 320 ELTSTLGL-EH-----VTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHTTC-CC-----CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCC-CC-----CCHHHHHHHHHHHHhCCCeEE
Confidence 1121 11 023455668889999999865
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=1.6e-11 Score=141.23 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=60.3
Q ss_pred ccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcccc
Q 003996 650 MVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCL 729 (780)
Q Consensus 650 ~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~ 729 (780)
+++.+++|+.|+|++|. +..++ ...++.+++|+.|+++++. +..++. ....+|+|++|+|++|. +..+
T Consensus 249 ~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~Ls~N~-l~~i 316 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHNH-LLHV 316 (597)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEE-SGGGTTCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCEEECCSSC-CCCC
T ss_pred hhccCCCCCEEECCCCc-cCCCC-HHHhcCccCCCEEECCCCC-CCCCCc--------ccccCCCCcEEECCCCC-CCcc
Confidence 46677778888887775 55442 2456777888888887643 444442 34567888888888863 5566
Q ss_pred CCCCCccCCcccceeecccCCCCCCcC
Q 003996 730 YPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 730 ~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+. ..+.+|+|+.|++++|+ ++.+|
T Consensus 317 ~~--~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 317 ER--NQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp GG--GHHHHTTCSEEECCSSC-CCCCC
T ss_pred Cc--ccccCCCCCEEECCCCC-CCCcC
Confidence 32 33567888888888876 44443
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=2.7e-11 Score=128.29 Aligned_cols=223 Identities=16% Similarity=0.162 Sum_probs=124.7
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
+..++.+.+.++.+..++. ...+++|++|.+.++... .+++..|.++++|++|+|++|.+..++. .+. ++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~--~~L~ 124 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPE-KMP--KTLQ 124 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCC--TTCC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCCCcCCccCh-hhc--cccc
Confidence 3567888888888777654 246888888888877653 4544557888888888888888776543 221 3444
Q ss_pred Hh---hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCc
Q 003996 582 RF---CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 582 ~L---~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L 657 (780)
+| .+.+ ..|...+.....++.|--+...+ .........+..+++|++|+++++.++.++.. + +++|
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~------~--~~~L 194 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPL--KSSGIENGAFQGMKKLSYIRIADTNITTIPQG------L--PPSL 194 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC--CGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS------C--CTTC
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcC--CccCcChhhccCCCCcCEEECCCCccccCCcc------c--cccC
Confidence 44 0000 11110000000000000000000 00001123455677788888887777643322 2 2677
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccC
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSE 737 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~ 737 (780)
+.|++++|. ++.++ ...+..+++|+.|+++++. ++.++. ..+..+++|++|+|+++ .+..++.. ...
T Consensus 195 ~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~ 261 (330)
T 1xku_A 195 TELHLDGNK-ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDN-------GSLANTPHLRELHLNNN-KLVKVPGG--LAD 261 (330)
T ss_dssp SEEECTTSC-CCEEC-TGGGTTCTTCCEEECCSSC-CCEECT-------TTGGGSTTCCEEECCSS-CCSSCCTT--TTT
T ss_pred CEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCc-CceeCh-------hhccCCCCCCEEECCCC-cCccCChh--hcc
Confidence 777777775 55542 2456677777777777644 333322 13456777777777776 45666432 356
Q ss_pred CcccceeecccCCCCCCcC
Q 003996 738 WPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 738 ~p~L~~L~i~~C~~L~~~~ 756 (780)
+++|+.|++++|+ ++.+|
T Consensus 262 l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 262 HKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp CSSCCEEECCSSC-CCCCC
T ss_pred CCCcCEEECCCCc-CCccC
Confidence 7777777777775 65555
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=5.6e-12 Score=145.01 Aligned_cols=109 Identities=23% Similarity=0.192 Sum_probs=86.6
Q ss_pred ccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhc
Q 003996 620 NEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIIS 699 (780)
Q Consensus 620 ~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~ 699 (780)
..+..+++|+.|+|++|.+..+ .|..++.+++|+.|+|++|. +..+| .....+++|+.|+|++|. +..++.
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~Ls~N~-l~~i~~ 318 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKI-----MYHPFVKMQRLERLYISNNR-LVALN--LYGQPIPTLKVLDLSHNH-LLHVER 318 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEE-----ESGGGTTCSSCCEEECTTSC-CCEEE--CSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred hhhccCCCCCEEECCCCccCCC-----CHHHhcCccCCCEEECCCCC-CCCCC--cccccCCCCcEEECCCCC-CCccCc
Confidence 4566788899999998887743 45568889999999999996 77775 455679999999999765 555653
Q ss_pred cCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 700 EDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 700 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+..+|+|++|+|++|. +..++ ...+|+|+.|++++||
T Consensus 319 --------~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 --------NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --------GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred --------ccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 45689999999999975 66662 4678999999999877
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=5.5e-11 Score=126.90 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=116.5
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
....++++.+.++.+..++....+++|++|.+.++... .++ .|.++++|++|+|++|.+..++. +.++++|++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~---~~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT---DIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---CCG--GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc---Cch--HHcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence 34456666666666655554445666666666665432 232 25666666666666666665543 455555555
Q ss_pred h----hhcccCCCCCCCccCCHHHHhccccccc---c-cccccccccccccccccccccccccccccccccCCCCccccc
Q 003996 583 F----CREVKTPSTSPNRQESQEELTASSDEIS---S-DTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCF 654 (780)
Q Consensus 583 L----~~~l~~P~~~l~~~~~l~~L~~~~~~~~---~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l 654 (780)
| +.....+.. +..++.++ . ++.......+..+++|++|+++++.+..+.. +..+
T Consensus 137 L~l~~n~~~~~~~~-----------~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~l 198 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-----------LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-------LASL 198 (347)
T ss_dssp EECTTCTTCCCCGG-----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-------GGGC
T ss_pred EECCCCCCcccccc-----------hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-------ccCC
Confidence 5 111111100 00011111 0 0001111224566677777777766653321 4556
Q ss_pred cCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCC
Q 003996 655 QSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMH 734 (780)
Q Consensus 655 ~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~ 734 (780)
++|+.|++++|. +..++ .+..+++|+.|++++|. +..++ .+..+++|++|+++++ .+..++ .
T Consensus 199 ~~L~~L~l~~n~-l~~~~---~~~~~~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~ 260 (347)
T 4fmz_A 199 TSLHYFTAYVNQ-ITDIT---PVANMTRLNSLKIGNNK-ITDLS---------PLANLSQLTWLEIGTN-QISDIN---A 260 (347)
T ss_dssp TTCCEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCG---G
T ss_pred CccceeecccCC-CCCCc---hhhcCCcCCEEEccCCc-cCCCc---------chhcCCCCCEEECCCC-ccCCCh---h
Confidence 777777777775 55542 26677788888877654 33322 2567888888888887 455552 2
Q ss_pred ccCCcccceeecccCCCCCCcC
Q 003996 735 TSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 735 ~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
...+|+|+.|++++|. ++.++
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~~ 281 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQ-ISDIS 281 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG
T ss_pred HhcCCCcCEEEccCCc-cCCCh
Confidence 3567889999888884 65544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.27 E-value=6.9e-12 Score=136.29 Aligned_cols=106 Identities=24% Similarity=0.218 Sum_probs=49.4
Q ss_pred cccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCc
Q 003996 623 VVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDR 702 (780)
Q Consensus 623 ~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~ 702 (780)
..+++|++|++++|.++.+ .|..+..+++|+.|+|++|. ++.++ .....+++|+.|++++|. +..++.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~--- 312 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKI-----MYHPFVKMQRLERLYISNNR-LVALN--LYGQPIPTLKVLDLSHNH-LLHVER--- 312 (390)
T ss_dssp GGCTTCSEEECCSSCCCEE-----ESGGGTTCSSCCEEECCSSC-CCEEE--CSSSCCTTCCEEECCSSC-CCCCGG---
T ss_pred cCCCCccEEECCCCcCCCc-----ChhHccccccCCEEECCCCc-CcccC--cccCCCCCCCEEECCCCc-ceecCc---
Confidence 3344444444444444322 12234445555555555543 44443 222345555555555432 333322
Q ss_pred ccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 703 TDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 703 ~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+..+++|++|++.+++ +..++ ...+++|+.|+++++|
T Consensus 313 -----~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 -----NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -----GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred -----cccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 23445666666666543 44441 2345666666666544
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.26 E-value=2.4e-11 Score=126.03 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=139.3
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF- 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L- 583 (780)
..++.+.+..+.+..+|... .++++.|.+.++... .+++..|.++++|++|+|++|.+..++.. +.+++|++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLY---TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCS---EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCC---ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 45777888888877777543 378999999888763 56666788999999999999998887652 677777777
Q ss_pred hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeec
Q 003996 584 CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVW 663 (780)
Q Consensus 584 ~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~ 663 (780)
.....+ ..++..+..+++|++|++++|.++.+. |..+..+++|+.|+|+
T Consensus 84 Ls~N~l--------------------------~~l~~~~~~l~~L~~L~l~~N~l~~l~-----~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 84 LSHNQL--------------------------QSLPLLGQTLPALTVLDVSFNRLTSLP-----LGALRGLGELQELYLK 132 (290)
T ss_dssp CCSSCC--------------------------SSCCCCTTTCTTCCEEECCSSCCCCCC-----SSTTTTCTTCCEEECT
T ss_pred CCCCcC--------------------------CcCchhhccCCCCCEEECCCCcCcccC-----HHHHcCCCCCCEEECC
Confidence 111111 011224567888999999998887543 2357788899999999
Q ss_pred cCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccce
Q 003996 664 GCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKN 743 (780)
Q Consensus 664 ~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~ 743 (780)
++. ++.++ ...+..+++|+.|+++++ .++.++. ..+..+++|++|+|.++ +++.++... ..+++|+.
T Consensus 133 ~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~-------~~~~~l~~L~~L~L~~N-~l~~ip~~~--~~~~~L~~ 199 (290)
T 1p9a_G 133 GNE-LKTLP-PGLLTPTPKLEKLSLANN-NLTELPA-------GLLNGLENLDTLLLQEN-SLYTIPKGF--FGSHLLPF 199 (290)
T ss_dssp TSC-CCCCC-TTTTTTCTTCCEEECTTS-CCSCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCCCSE
T ss_pred CCC-CCccC-hhhcccccCCCEEECCCC-cCCccCH-------HHhcCcCCCCEEECCCC-cCCccChhh--cccccCCe
Confidence 986 77774 234678899999999864 4655553 13456889999999886 477775433 45678999
Q ss_pred eecccCC
Q 003996 744 LVACNCD 750 (780)
Q Consensus 744 L~i~~C~ 750 (780)
|.+.++|
T Consensus 200 l~L~~Np 206 (290)
T 1p9a_G 200 AFLHGNP 206 (290)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 9887654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=2.1e-11 Score=132.38 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=54.3
Q ss_pred ccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcccc
Q 003996 650 MVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCL 729 (780)
Q Consensus 650 ~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~ 729 (780)
+++.+++|+.|+|++|. +...+ ...+..+++|+.|+++++. ++.++. ....+|+|++|+++++ ++..+
T Consensus 243 ~l~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEE-SGGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCC
T ss_pred HHcCCCCccEEECCCCc-CCCcC-hhHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceec
Confidence 35566667777777664 44431 1455666777777776543 444332 2345777777777776 45555
Q ss_pred CCCCCccCCcccceeecccCCCCCCcC
Q 003996 730 YPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 730 ~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+. ....+++|+.|++++|+ ++.+|
T Consensus 311 ~~--~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 311 ER--NQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp GG--GHHHHTTCSEEECCSSC-CCCCC
T ss_pred Cc--cccccCcCCEEECCCCc-cceeC
Confidence 32 23557777777777765 44443
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.24 E-value=2.3e-11 Score=124.93 Aligned_cols=176 Identities=18% Similarity=0.270 Sum_probs=136.4
Q ss_pred hhccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhH
Q 003996 503 ALKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L 580 (780)
.+..++++.+.++.+..++. ...+++|++|.+.++.. ..++..+|.++++|++|+|++|.+..++.-.+.++++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC---SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc---CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 34679999999999887764 34799999999998876 47888888999999999999999988775446788888
Q ss_pred HHh-h--hcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccC
Q 003996 581 TRF-C--REV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQS 656 (780)
Q Consensus 581 ~~L-~--~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~ 656 (780)
++| . +.+ ..|. ..+..+++|++|++++|.++.+.. ..+..+++
T Consensus 112 ~~L~l~~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~ 158 (270)
T 2o6q_A 112 AELRLDRNQLKSLPP----------------------------RVFDSLTKLTYLSLGYNELQSLPK-----GVFDKLTS 158 (270)
T ss_dssp CEEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTT
T ss_pred CEEECCCCccCeeCH----------------------------HHhCcCcCCCEEECCCCcCCccCH-----hHccCCcc
Confidence 887 1 111 1121 235678999999999998875433 24678899
Q ss_pred ccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 657 LTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 657 L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
|+.|+|++|. +..+++ ..+..+++|+.|+++++ .++.++. ..+..+++|+.|+|.++|
T Consensus 159 L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 159 LKELRLYNNQ-LKRVPE-GAFDKLTELKTLKLDNN-QLKRVPE-------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSS-CCSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCc-CcEeCh-hHhccCCCcCEEECCCC-cCCcCCH-------HHhccccCCCEEEecCCC
Confidence 9999999996 777742 35778999999999976 4655543 235678999999999886
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=136.90 Aligned_cols=233 Identities=17% Similarity=0.180 Sum_probs=125.9
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
...++.|.+..+.+..+.. ...+++|++|.+.++.. ..+|..+|.++++|++|+|++|.+..+..-.++++++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL---KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC---CccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 3578888888887766532 24688888888887765 467777778888888888888888765443567777777
Q ss_pred Hh---hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccc-------------
Q 003996 582 RF---CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHY------------- 644 (780)
Q Consensus 582 ~L---~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~------------- 644 (780)
+| .+.+ ..+...+....+|+.|--+...+. .-....+..+++|+.|++.++++..+...
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCc----ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 77 1111 112111111111111100000000 00001133444555555554444332111
Q ss_pred ------cCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEE
Q 003996 645 ------NQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTL 718 (780)
Q Consensus 645 ------~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L 718 (780)
..+|.......+|+.|+|++|. ++.+| ...+..+++|+.|+++++. +..++. ..+..+++|++|
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L 277 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVP-YLAVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEI 277 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCC-HHHHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEE
T ss_pred CCCccccccCcccccCccccEEECcCCc-ccccC-HHHhcCccccCeeECCCCc-CCccCh-------hhccccccCCEE
Confidence 1122222223356666666654 55553 2345667777777777543 333332 235567788888
Q ss_pred eccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 719 KLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 719 ~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+|.++ ++..+... ....+++|+.|++++|. |+.+|
T Consensus 278 ~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~ 312 (477)
T 2id5_A 278 QLVGG-QLAVVEPY-AFRGLNYLRVLNVSGNQ-LTTLE 312 (477)
T ss_dssp ECCSS-CCSEECTT-TBTTCTTCCEEECCSSC-CSCCC
T ss_pred ECCCC-ccceECHH-HhcCcccCCEEECCCCc-CceeC
Confidence 88776 35555322 23567888888888874 66555
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.24 E-value=8.6e-11 Score=130.84 Aligned_cols=215 Identities=19% Similarity=0.237 Sum_probs=109.2
Q ss_pred hhhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 502 DALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 502 ~~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
.....++++.+.++.+..++....+++|+.|.+.++... .+++ +.++++|++|+|++|.+..++. +++|++|+
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~---~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 137 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA---DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccc---cChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence 344567777777777766655556777777777766543 3443 6777777888877777766653 56666666
Q ss_pred Hh----hhcccCCCCCCCccCCHHHH-----------hccccccc---c-cccccccccccccccccccccccccccccc
Q 003996 582 RF----CREVKTPSTSPNRQESQEEL-----------TASSDEIS---S-DTSTLLFNEKVVLPNLEALELNAINADEIW 642 (780)
Q Consensus 582 ~L----~~~l~~P~~~l~~~~~l~~L-----------~~~~~~~~---~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 642 (780)
+| +.....|. +....+++.| +..++.++ . ++.......+..+++|++|+++++.+..+
T Consensus 138 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~- 214 (466)
T 1o6v_A 138 RLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI- 214 (466)
T ss_dssp EEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-
T ss_pred EEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccc-
Confidence 66 11111111 0000000000 00000000 0 00000112233444444444444444321
Q ss_pred cccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccC
Q 003996 643 HYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDG 722 (780)
Q Consensus 643 ~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~ 722 (780)
.| ++.+++|+.|++++|. ++.+ +.+..+++|+.|++++|. +..++ .+..+++|++|++++
T Consensus 215 ----~~--~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 215 ----TP--LGILTNLDELSLNGNQ-LKDI---GTLASLTNLTDLDLANNQ-ISNLA---------PLSGLTKLTELKLGA 274 (466)
T ss_dssp ----GG--GGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCG---------GGTTCTTCSEEECCS
T ss_pred ----cc--ccccCCCCEEECCCCC-cccc---hhhhcCCCCCEEECCCCc-cccch---------hhhcCCCCCEEECCC
Confidence 11 3445556666666554 4443 344556666666666543 22221 245667777777777
Q ss_pred CCCccccCCCCCccCCcccceeecccCC
Q 003996 723 LPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 723 ~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
+ .+..++. ...+++|+.|++++|.
T Consensus 275 n-~l~~~~~---~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 275 N-QISNISP---LAGLTALTNLELNENQ 298 (466)
T ss_dssp S-CCCCCGG---GTTCTTCSEEECCSSC
T ss_pred C-ccCcccc---ccCCCccCeEEcCCCc
Confidence 5 3444422 3467778888777764
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=6.9e-12 Score=131.77 Aligned_cols=225 Identities=13% Similarity=0.143 Sum_probs=122.5
Q ss_pred hhccceEEEeec-Cccc-ccCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc-ccccccCCCh
Q 003996 503 ALKKCYAISLLN-SSIH-EVSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ-LRSLTLGKLP 578 (780)
Q Consensus 503 ~~~~~r~lsl~~-~~~~-~~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~-L~~L~i~~L~ 578 (780)
....++++.+.+ +.+. .+|.. ..+++|++|.+.++... ..+|. .|.++++|++|+|++|.+.. ++. .+++++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPD-FLSQIKTLVTLDFSYNALSGTLPP-SISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--EECCG-GGGGCTTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC--CcCCH-HHhCCCCCCEEeCCCCccCCcCCh-HHhcCC
Confidence 346788999984 6664 34433 46899999999887764 34554 46889999999999998873 554 577888
Q ss_pred hHHHh---hhccc--CCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcccc
Q 003996 579 KVTRF---CREVK--TPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPC 653 (780)
Q Consensus 579 ~L~~L---~~~l~--~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~ 653 (780)
+|++| .+.+. .|..-......++.|--+...+ ....+..+..++ |+.|++++|.++. ..|..+..
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l----~~~~~~~~~~l~-L~~L~Ls~N~l~~-----~~~~~~~~ 219 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL----TGKIPPTFANLN-LAFVDLSRNMLEG-----DASVLFGS 219 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE----EEECCGGGGGCC-CSEEECCSSEEEE-----CCGGGCCT
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee----eccCChHHhCCc-ccEEECcCCcccC-----cCCHHHhc
Confidence 88877 11111 1320000000000000000000 001122333343 6666666665543 23444566
Q ss_pred ccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCC
Q 003996 654 FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGM 733 (780)
Q Consensus 654 l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~ 733 (780)
+++|+.|+|++|. +...+ +.+..+++|++|+++++.-...++. .+..+++|++|+|+++.--..+|..
T Consensus 220 l~~L~~L~L~~N~-l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 220 DKNTQKIHLAKNS-LAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQ--------GLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp TSCCSEEECCSSE-ECCBG--GGCCCCTTCCEEECCSSCCEECCCG--------GGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred CCCCCEEECCCCc-eeeec--CcccccCCCCEEECcCCcccCcCCh--------HHhcCcCCCEEECcCCcccccCCCC-
Confidence 6667777776665 33222 3355566677777665542222322 3455667777777666422244321
Q ss_pred CccCCcccceeecccCCCCCCc
Q 003996 734 HTSEWPALKNLVACNCDKITLS 755 (780)
Q Consensus 734 ~~~~~p~L~~L~i~~C~~L~~~ 755 (780)
+.+++|+.|++.++|.|...
T Consensus 288 --~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 --GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp --TTGGGSCGGGTCSSSEEEST
T ss_pred --ccccccChHHhcCCCCccCC
Confidence 45667777777776666543
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=8.5e-11 Score=118.42 Aligned_cols=198 Identities=12% Similarity=0.133 Sum_probs=117.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
.....++||+.+++.+..++.... .+.+.|+|++|+||||+|+.+++.......+.. ........ ...+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhcc
Confidence 345678999999999999987543 358899999999999999999987754321100 00000000 0000000
Q ss_pred hC-----CCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEEeCChHHHh--
Q 003996 231 LG-----LELSDEAEYRRASRLYERLK----NENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLTARDINVLL-- 297 (780)
Q Consensus 231 l~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~-- 297 (780)
.. ..............+.+.+. .+++.+||+||++.. ..+..+...+.....+..+|+||+......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 00 00000011111222222221 235799999999654 233333333323345778888887643211
Q ss_pred hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 298 SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
.......+.+++++.++..+++...+...... --.+....|++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12234589999999999999999877422111 123567899999999999988776544
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.22 E-value=2.1e-11 Score=128.06 Aligned_cols=225 Identities=13% Similarity=0.104 Sum_probs=141.3
Q ss_pred ccceEEEeecCcccc---cCCC-CCCCCccEEEeec-CCCCCCcccchHHHhcCCcceEEEecCCCcC-cccccccCCCh
Q 003996 505 KKCYAISLLNSSIHE---VSEE-FECPQLEFLYIDP-QITFSEVNIPDNFFKGMKKLRVVDLTRIEFG-QLRSLTLGKLP 578 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~---~~~~-~~~~~Lr~L~l~~-~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~-~L~~L~i~~L~ 578 (780)
.+++++.+.++.+.. ++.. ..+++|++|.+.+ +... ..+|.. |.++++|++|+|++|.+. .++. .+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~--~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--GPIPPA-IAKLTQLHYLYITHTNVSGAIPD-FLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE--SCCCGG-GGGCTTCSEEEEEEECCEEECCG-GGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc--ccCChh-HhcCCCCCEEECcCCeeCCcCCH-HHhCCC
Confidence 478999999998863 5544 4799999999995 5543 456655 799999999999999997 4555 688889
Q ss_pred hHHHh---hhccc-C-CCCCCCccCCHHHHhcccccccccccccccccccccc-cccccccccccccccccccCCCCccc
Q 003996 579 KVTRF---CREVK-T-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLP-NLEALELNAINADEIWHYNQLPGMVP 652 (780)
Q Consensus 579 ~L~~L---~~~l~-~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~lP~~~~ 652 (780)
+|++| .+.+. . |. .+.....++.|--+...+ ....+..+..++ +|++|++++|.+.. .+|..+.
T Consensus 126 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l----~~~~p~~l~~l~~~L~~L~L~~N~l~~-----~~~~~~~ 195 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRI----SGAIPDSYGSFSKLFTSMTISRNRLTG-----KIPPTFA 195 (313)
T ss_dssp TCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCC----EEECCGGGGCCCTTCCEEECCSSEEEE-----ECCGGGG
T ss_pred CCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcc----cCcCCHHHhhhhhcCcEEECcCCeeec-----cCChHHh
Confidence 99988 22222 2 32 000000011110000000 012233455555 77777777776652 3444566
Q ss_pred cccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCC
Q 003996 653 CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPG 732 (780)
Q Consensus 653 ~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~ 732 (780)
.++ |+.|++++|. +...+ ...+..+++|+.|+++++. +...+ ..+..+++|++|+|+++.--..++
T Consensus 196 ~l~-L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p-- 261 (313)
T 1ogq_A 196 NLN-LAFVDLSRNM-LEGDA-SVLFGSDKNTQKIHLAKNS-LAFDL--------GKVGLSKNLNGLDLRNNRIYGTLP-- 261 (313)
T ss_dssp GCC-CSEEECCSSE-EEECC-GGGCCTTSCCSEEECCSSE-ECCBG--------GGCCCCTTCCEEECCSSCCEECCC--
T ss_pred CCc-ccEEECcCCc-ccCcC-CHHHhcCCCCCEEECCCCc-eeeec--------CcccccCCCCEEECcCCcccCcCC--
Confidence 665 8888888875 44332 2456778888888888655 32222 134578999999999875333553
Q ss_pred CCccCCcccceeecccCCCCCCcCC
Q 003996 733 MHTSEWPALKNLVACNCDKITLSQN 757 (780)
Q Consensus 733 ~~~~~~p~L~~L~i~~C~~L~~~~~ 757 (780)
.....+++|+.|++++|+--..+|.
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCC
T ss_pred hHHhcCcCCCEEECcCCcccccCCC
Confidence 3346789999999999873336663
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=6.6e-11 Score=119.02 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=138.3
Q ss_pred cCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCC-cCcccccccCCChhHHHh-h---hccc
Q 003996 514 NSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIE-FGQLRSLTLGKLPKVTRF-C---REVK 588 (780)
Q Consensus 514 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~-~~~L~~L~i~~L~~L~~L-~---~~l~ 588 (780)
+.++..+|. -.++++.|.+.++.. ..+++..|.++++|++|+|++|. +..++.-.++++++|++| . ..++
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l---~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHL---RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCC---SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccCccccCC--CCCcccEEEEeCCcc---eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 334555665 345899999998876 46777778999999999999997 888776457788888887 1 2222
Q ss_pred C-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCcc---EEeecc
Q 003996 589 T-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLT---RLIVWG 664 (780)
Q Consensus 589 ~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~---~L~L~~ 664 (780)
. |. ..+..+++|++|++++|.++. +|. +..+++|+ .|++++
T Consensus 95 ~i~~----------------------------~~f~~l~~L~~L~l~~n~l~~------lp~-~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 95 YIDP----------------------------DALKELPLLKFLGIFNTGLKM------FPD-LTKVYSTDIFFILEITD 139 (239)
T ss_dssp EECT----------------------------TSEECCTTCCEEEEEEECCCS------CCC-CTTCCBCCSEEEEEEES
T ss_pred EcCH----------------------------HHhCCCCCCCEEeCCCCCCcc------ccc-cccccccccccEEECCC
Confidence 2 21 245678899999999988864 343 55566666 999999
Q ss_pred CccCccccchhhHhhccCCc-EEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCC-cccc
Q 003996 665 CDKLKYIFSASTIQSLEQLQ-HLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW-PALK 742 (780)
Q Consensus 665 c~~l~~l~~~~~l~~L~~L~-~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~-p~L~ 742 (780)
+..++.++ ...+..+++|+ .|+++++. ++.++. .....++|++|++.+++.++.++... ...+ ++|+
T Consensus 140 N~~l~~i~-~~~~~~l~~L~~~L~l~~n~-l~~i~~--------~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~ 208 (239)
T 2xwt_C 140 NPYMTSIP-VNAFQGLCNETLTLKLYNNG-FTSVQG--------YAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPS 208 (239)
T ss_dssp CTTCCEEC-TTTTTTTBSSEEEEECCSCC-CCEECT--------TTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCS
T ss_pred CcchhhcC-cccccchhcceeEEEcCCCC-CcccCH--------hhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCc
Confidence 85588775 23577899999 99998653 555543 11223789999999987788885433 2456 8999
Q ss_pred eeecccCCCCCCcCC
Q 003996 743 NLVACNCDKITLSQN 757 (780)
Q Consensus 743 ~L~i~~C~~L~~~~~ 757 (780)
.|++++++ ++.+|.
T Consensus 209 ~L~l~~N~-l~~l~~ 222 (239)
T 2xwt_C 209 LLDVSQTS-VTALPS 222 (239)
T ss_dssp EEECTTCC-CCCCCC
T ss_pred EEECCCCc-cccCCh
Confidence 99999865 777763
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=1.5e-10 Score=118.95 Aligned_cols=175 Identities=19% Similarity=0.212 Sum_probs=104.9
Q ss_pred hhhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 502 DALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 502 ~~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
.....++.+.+.++.+..++....+++|+.|.+.++... .++ .+.++++|++|+|++|.+..++.-.++++++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~---~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH---DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC---CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC---Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 344678888888888777766667888999988887653 333 368888899999988888776542345566666
Q ss_pred Hh-h--hcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCc
Q 003996 582 RF-C--REV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 582 ~L-~--~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L 657 (780)
+| . +.+ ..|. ..+..+++|++|++++|.++.+. |.+++.+++|
T Consensus 113 ~L~L~~n~l~~~~~----------------------------~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L 159 (272)
T 3rfs_A 113 ELVLVENQLQSLPD----------------------------GVFDKLTNLTYLNLAHNQLQSLP-----KGVFDKLTNL 159 (272)
T ss_dssp EEECTTSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTC
T ss_pred EEECCCCcCCccCH----------------------------HHhccCCCCCEEECCCCccCccC-----HHHhccCccC
Confidence 55 1 111 1111 12445666666666666665322 2234556666
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
+.|++++|. +..+++ ..+..+++|+.|+++++. +..++. ..+..+++|++|++.+++
T Consensus 160 ~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 160 TELDLSYNQ-LQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPD-------GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-cCccCH-HHhcCCccCCEEECCCCc-CCccCH-------HHHhCCcCCCEEEccCCC
Confidence 677766664 555431 234566666666666543 333332 123456666666666653
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.20 E-value=3.5e-11 Score=125.97 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=123.0
Q ss_pred EEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc--cccCCChhHHHh---
Q 003996 509 AISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS--LTLGKLPKVTRF--- 583 (780)
Q Consensus 509 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~--L~i~~L~~L~~L--- 583 (780)
.+....+.+..+|... .++++.|.+.++.. ..+|..+|.++++|++|+|++|.+..+.. ..+..+++|++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCcc---CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4566666666676532 47999999998876 47888889999999999999999875421 134556777766
Q ss_pred -hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEee
Q 003996 584 -CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIV 662 (780)
Q Consensus 584 -~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L 662 (780)
+....+|.. +....+++.|--+...+. .......+..+++|++|+++++.+..+ .|..+..+++|+.|++
T Consensus 87 ~n~i~~l~~~-~~~l~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 87 FNGVITMSSN-FLGLEQLEHLDFQHSNLK---QMSEFSVFLSLRNLIYLDISHTHTRVA-----FNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCSEEEEEEE-EETCTTCCEEECTTSEEE---SSTTTTTTTTCTTCCEEECTTSCCEEC-----STTTTTTCTTCCEEEC
T ss_pred CCccccChhh-cCCCCCCCEEECCCCccc---ccccchhhhhccCCCEEECCCCcCCcc-----chhhcccCcCCCEEEC
Confidence 111111210 000000000100000000 000012345566677777766665532 3334566677777777
Q ss_pred ccCccCcc--ccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcc
Q 003996 663 WGCDKLKY--IFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPA 740 (780)
Q Consensus 663 ~~c~~l~~--l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~ 740 (780)
++|. +.. +| ..+..+++|+.|+++++. ++.++. ..+..+++|++|+++++. +..++.. ....+++
T Consensus 158 ~~n~-l~~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~ 224 (306)
T 2z66_A 158 AGNS-FQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSP-------TAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNS 224 (306)
T ss_dssp TTCE-EGGGEEC--SCCTTCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTT
T ss_pred CCCc-cccccch--hHHhhCcCCCEEECCCCC-cCCcCH-------HHhcCCCCCCEEECCCCc-cCccChh-hccCccc
Confidence 7765 332 22 345667777777777553 333321 145567788888887763 5555321 2345778
Q ss_pred cceeecccCC
Q 003996 741 LKNLVACNCD 750 (780)
Q Consensus 741 L~~L~i~~C~ 750 (780)
|+.|++++|+
T Consensus 225 L~~L~L~~N~ 234 (306)
T 2z66_A 225 LQVLDYSLNH 234 (306)
T ss_dssp CCEEECTTSC
T ss_pred CCEeECCCCC
Confidence 8888888875
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.20 E-value=1.5e-10 Score=114.72 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=118.8
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL 231 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 231 (780)
.....++||+..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567899999999999999876655699999999999999999998764331112244445444444333322221111
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChHHH-h-hcCCCceEec
Q 003996 232 GLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDINVL-L-SMGSKDNFLI 307 (780)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~-~~~~~~~~~l 307 (780)
.... ....++.+||+||++... ..+.+...+.....+.++|+||+..... . .......+.+
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 1100 012467999999997652 2222322222234567888888865321 1 1222348899
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 308 GNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 308 ~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
.+++.++..+++.+.+...... --.+....|++.++|.|..+..+...+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999876421111 113567789999999999665544433
No 47
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=1.1e-10 Score=118.27 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=92.3
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh--
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-- 583 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-- 583 (780)
..+++.+.++.+..+|... .++++.|.+.++... .+++..|.++++|++|+|++|.+..+..-.+.++++|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLA---TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcC---ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3456777777777776543 368888888877763 5566667888888888888888776543224444444444
Q ss_pred -hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 584 -CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 584 -~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
.+.+ .+|. ..+..+++|++|+|++|.++.+.. ..+..+++|+.|+
T Consensus 91 ~~n~l~~~~~----------------------------~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~ 137 (251)
T 3m19_A 91 ANNQLASLPL----------------------------GVFDHLTQLDKLYLGGNQLKSLPS-----GVFDRLTKLKELR 137 (251)
T ss_dssp TTSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEE
T ss_pred CCCcccccCh----------------------------hHhcccCCCCEEEcCCCcCCCcCh-----hHhccCCcccEEE
Confidence 0000 0010 123345555555665555543221 1234455566666
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
|+++. ++.+++ ..+..+++|+.|+++++. ++.++. ..+..+++|++|+|.+++
T Consensus 138 Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 138 LNTNQ-LQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPH-------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSCC
T ss_pred CcCCc-CCccCH-HHcCcCcCCCEEECCCCc-CCccCH-------HHHhCCCCCCEEEeeCCc
Confidence 65553 444431 234455556666555432 333322 123345555555555543
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.20 E-value=5.3e-11 Score=127.38 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=128.2
Q ss_pred EEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh---hhc
Q 003996 510 ISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---CRE 586 (780)
Q Consensus 510 lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---~~~ 586 (780)
....++.+..+|... .++|++|.+.++.. ..++...|.++++|++|+|++|.+..+..-.++++++|++| .+.
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 455566677776532 46999999998876 46777678999999999999999988654358888999988 111
Q ss_pred c-cCCCCCCCccCCHHHHhccccccccc-cc-ccccc--ccccccccccccccccc-ccccccccCCCCccccccCccEE
Q 003996 587 V-KTPSTSPNRQESQEELTASSDEISSD-TS-TLLFN--EKVVLPNLEALELNAIN-ADEIWHYNQLPGMVPCFQSLTRL 660 (780)
Q Consensus 587 l-~~P~~~l~~~~~l~~L~~~~~~~~~~-~~-~~~~~--~~~~l~~L~~L~l~~~~-l~~l~~~~~lP~~~~~l~~L~~L 660 (780)
+ .+|...+....+++. +... +. ..... .+..+++|++|++++|+ +..+ .|..++.+++|+.|
T Consensus 112 l~~~~~~~~~~l~~L~~-------L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~l~~L~~L 179 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTF-------LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-----QRKDFAGLTFLEEL 179 (353)
T ss_dssp CSSCCHHHHTTCTTCSE-------EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-----CTTTTTTCCEEEEE
T ss_pred CCcCCHhHhCCCccCCE-------EECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-----CHHHccCCCCCCEE
Confidence 1 112200000000111 1100 00 01111 34556667777776653 4332 12335666777777
Q ss_pred eeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCC-------
Q 003996 661 IVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGM------- 733 (780)
Q Consensus 661 ~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~------- 733 (780)
++++|. +...+ ...+..+++|++|+++++. +..++. .....+++|++|+++++. +..++...
T Consensus 180 ~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~~-------~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 180 EIDASD-LQSYE-PKSLKSIQNVSHLILHMKQ-HILLLE-------IFVDVTSSVECLELRDTD-LDTFHFSELSTGETN 248 (353)
T ss_dssp EEEETT-CCEEC-TTTTTTCSEEEEEEEECSC-STTHHH-------HHHHHTTTEEEEEEESCB-CTTCCCC------CC
T ss_pred ECCCCC-cCccC-HHHHhccccCCeecCCCCc-cccchh-------hhhhhcccccEEECCCCc-ccccccccccccccc
Confidence 777765 44431 1456667777777777544 344432 122347788888888763 44332110
Q ss_pred -----------------------CccCCcccceeecccCCCCCCcCC
Q 003996 734 -----------------------HTSEWPALKNLVACNCDKITLSQN 757 (780)
Q Consensus 734 -----------------------~~~~~p~L~~L~i~~C~~L~~~~~ 757 (780)
....+++|+.|++++|. ++.+|.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~ 294 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD 294 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH
Confidence 11356788999988884 776663
No 49
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=8.9e-11 Score=121.76 Aligned_cols=166 Identities=22% Similarity=0.226 Sum_probs=102.9
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
....++++.+.++.+..++....+++|++|.+.++... .+++ +.++++|++|+|++|.+..++. ++++++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~---~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC---CCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence 35678899999888877776667899999999888763 4554 7889999999999998877663 555555555
Q ss_pred h-hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 583 F-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 583 L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
| .....+ ..++.+..+++|+.|++++|.++.+ . .++.+++|+.|+
T Consensus 117 L~L~~n~i---------------------------~~~~~l~~l~~L~~L~l~~n~l~~~-~------~l~~l~~L~~L~ 162 (291)
T 1h6t_A 117 LSLEHNGI---------------------------SDINGLVHLPQLESLYLGNNKITDI-T------VLSRLTKLDTLS 162 (291)
T ss_dssp EECTTSCC---------------------------CCCGGGGGCTTCCEEECCSSCCCCC-G------GGGGCTTCSEEE
T ss_pred EECCCCcC---------------------------CCChhhcCCCCCCEEEccCCcCCcc-h------hhccCCCCCEEE
Confidence 5 100000 0012344556666666666655543 1 245566666666
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCC
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGL 723 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~ 723 (780)
+++|. +..++ .+..+++|+.|+++++. ++.++ .+..+++|+.|++.++
T Consensus 163 L~~N~-l~~~~---~l~~l~~L~~L~L~~N~-i~~l~---------~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 163 LEDNQ-ISDIV---PLAGLTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSC-CCCCG---GGTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCSEEEEEEE
T ss_pred ccCCc-cccch---hhcCCCccCEEECCCCc-CCCCh---------hhccCCCCCEEECcCC
Confidence 66664 55543 25566666666666542 33332 2345666666666654
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.18 E-value=3.2e-11 Score=142.94 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=29.3
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecC
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 691 (780)
.+..+++|++|++++|.+.. .+|..++.+++|+.|+|++|..-..+| ..+..+++|+.|++++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSG-----TIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFN 476 (768)
T ss_dssp GGGGCTTCCEEECCSSEEES-----CCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSS
T ss_pred HHhcCCCCCEEECcCCcccC-----cccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCC
Confidence 34455556666665555442 233334444555555555444222222 33444444444444443
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.17 E-value=1.2e-10 Score=123.36 Aligned_cols=222 Identities=16% Similarity=0.206 Sum_probs=147.9
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh--
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-- 583 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-- 583 (780)
..+.+.+..+.+..+|... .++++.|.+.++.. ..+++..|.++++|++|+|++|.+..+..-.+++|++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC---CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5677787777777776533 47899999998876 46777678999999999999999988633368899999988
Q ss_pred -hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 584 -CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 584 -~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
.+.+ .+|.... ..++.|--+...+. .-....+..+++|++|+++++.+... ...|..+..+++|+.|+
T Consensus 108 s~n~l~~l~~~~~---~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 108 SKNQLKELPEKMP---KTLQELRVHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CSSCCSBCCSSCC---TTCCEEECCSSCCC----BBCHHHHTTCTTCCEEECCSSCCCGG---GBCTTGGGGCTTCCEEE
T ss_pred CCCcCCccChhhc---ccccEEECCCCccc----ccCHhHhcCCccccEEECCCCcCCcc---CcChhhccCCCCcCEEE
Confidence 1222 2243211 11111100000000 00112356678888888888777532 12344577888999999
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCccc
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPAL 741 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L 741 (780)
+++|. +..+| ..+ .++|+.|+++++. ++.++. ..+..+++|++|+++++. +..++.. ....+++|
T Consensus 178 l~~n~-l~~l~--~~~--~~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L 242 (330)
T 1xku_A 178 IADTN-ITTIP--QGL--PPSLTELHLDGNK-ITKVDA-------ASLKGLNNLAKLGLSFNS-ISAVDNG-SLANTPHL 242 (330)
T ss_dssp CCSSC-CCSCC--SSC--CTTCSEEECTTSC-CCEECT-------GGGTTCTTCCEEECCSSC-CCEECTT-TGGGSTTC
T ss_pred CCCCc-cccCC--ccc--cccCCEEECCCCc-CCccCH-------HHhcCCCCCCEEECCCCc-CceeChh-hccCCCCC
Confidence 98886 77665 222 3789999998764 444322 246678999999999974 6666432 34578999
Q ss_pred ceeecccCCCCCCcCC
Q 003996 742 KNLVACNCDKITLSQN 757 (780)
Q Consensus 742 ~~L~i~~C~~L~~~~~ 757 (780)
+.|++++|. ++.+|.
T Consensus 243 ~~L~L~~N~-l~~lp~ 257 (330)
T 1xku_A 243 RELHLNNNK-LVKVPG 257 (330)
T ss_dssp CEEECCSSC-CSSCCT
T ss_pred CEEECCCCc-CccCCh
Confidence 999999985 776764
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=2.2e-10 Score=121.39 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=57.3
Q ss_pred ccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccc
Q 003996 626 PNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQ 705 (780)
Q Consensus 626 ~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 705 (780)
++|++|++++|.++.+ .|..+..+++|+.|+|++|. ++.++ ...+..+++|+.|+++++. ++.++.
T Consensus 193 ~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~lp~------ 258 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHNQ-IRMIE-NGSLSFLPTLRELHLDNNK-LSRVPA------ 258 (332)
T ss_dssp SSCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSSC-CCCCC-TTGGGGCTTCCEEECCSSC-CCBCCT------
T ss_pred CCCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCc-CCcCC-hhHhhCCCCCCEEECCCCc-CeecCh------
Confidence 4666666666665532 22335556666666666664 54442 1245566666666666542 444432
Q ss_pred cccccccCcccEEeccCCCCccccCCCCCcc-----CCcccceeecccCC
Q 003996 706 VTAYFVFPRVTTLKLDGLPELRCLYPGMHTS-----EWPALKNLVACNCD 750 (780)
Q Consensus 706 ~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~-----~~p~L~~L~i~~C~ 750 (780)
.+..+++|++|+++++ .++.++...... .++.|+.|.+.++|
T Consensus 259 --~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 259 --GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp --TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred --hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 3445666666666664 345553221111 14556666666665
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=5.2e-11 Score=124.66 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=132.2
Q ss_pred CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-hhcccCCCCCCCccCCHHH
Q 003996 524 FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-CREVKTPSTSPNRQESQEE 602 (780)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-~~~l~~P~~~l~~~~~l~~ 602 (780)
.++++|++|.+.++... .++. +..+++|++|+|++|.+..++. ++++++|++| .....+
T Consensus 38 ~~l~~L~~L~l~~~~i~---~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l------------- 97 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT---TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL------------- 97 (308)
T ss_dssp HHHHTCCEEECTTSCCC---CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-------------
T ss_pred HHcCCcCEEEeeCCCcc---Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-------------
Confidence 35789999999988753 4553 7899999999999999998876 7888888888 111111
Q ss_pred HhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccC
Q 003996 603 LTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQ 682 (780)
Q Consensus 603 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~ 682 (780)
...+.+..+++|++|++++|.++.+. . +..+++|+.|++++|. +..++ .+..+++
T Consensus 98 --------------~~~~~~~~l~~L~~L~l~~n~l~~~~------~-l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~ 152 (308)
T 1h6u_A 98 --------------KNVSAIAGLQSIKTLDLTSTQITDVT------P-LAGLSNLQVLYLDLNQ-ITNIS---PLAGLTN 152 (308)
T ss_dssp --------------SCCGGGTTCTTCCEEECTTSCCCCCG------G-GTTCTTCCEEECCSSC-CCCCG---GGGGCTT
T ss_pred --------------CCchhhcCCCCCCEEECCCCCCCCch------h-hcCCCCCCEEECCCCc-cCcCc---cccCCCC
Confidence 01134677899999999999887542 1 7788999999999996 77774 3789999
Q ss_pred CcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 683 LQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 683 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
|+.|++++|. +..++ .+..+++|++|+++++ .+..++. ...+++|+.|++++|+ ++.++
T Consensus 153 L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 153 LQYLSIGNAQ-VSDLT---------PLANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp CCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCG
T ss_pred ccEEEccCCc-CCCCh---------hhcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCc-cCccc
Confidence 9999999764 44443 3567899999999997 4666642 4678999999999885 55444
No 54
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=9.6e-11 Score=133.61 Aligned_cols=167 Identities=21% Similarity=0.226 Sum_probs=118.3
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
....++.|.+.++.+..++....+++|+.|.+.++... .+++ +..+++|+.|+|++|.+..++ .+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence 44678888888888888776667999999999988763 4554 789999999999999988876 4667777776
Q ss_pred h-hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 583 F-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 583 L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
| .....+ ..++.+..+++|+.|+|++|.+..+ . .++.+++|+.|+
T Consensus 114 L~Ls~N~l---------------------------~~l~~l~~l~~L~~L~Ls~N~l~~l-~------~l~~l~~L~~L~ 159 (605)
T 1m9s_A 114 LSLEHNGI---------------------------SDINGLVHLPQLESLYLGNNKITDI-T------VLSRLTKLDTLS 159 (605)
T ss_dssp EECTTSCC---------------------------CCCGGGGGCTTCSEEECCSSCCCCC-G------GGGSCTTCSEEE
T ss_pred EEecCCCC---------------------------CCCccccCCCccCEEECCCCccCCc-h------hhcccCCCCEEE
Confidence 6 111000 0112456677888888888777654 1 266778888888
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
|++|. +..++ + +..+++|+.|+|++|. +..++ .+..+++|+.|+|.+|+
T Consensus 160 Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~-i~~l~---------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 160 LEDNQ-ISDIV--P-LAGLTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCSEEECCSEE
T ss_pred CcCCc-CCCch--h-hccCCCCCEEECcCCC-CCCCh---------HHccCCCCCEEEccCCc
Confidence 88885 66654 2 6778888888887653 44332 35667888888887764
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=3.1e-11 Score=134.81 Aligned_cols=210 Identities=13% Similarity=0.133 Sum_probs=122.5
Q ss_pred ccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 505 KKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
.++++|.+.++.+..++. ...+++|++|.+.++... .+++ |..+++|++|+|++|.+..++. .++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---EEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---CCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 478888888888876653 246888899988887753 2333 6888889999998888766443 244444
Q ss_pred h---hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccc-cccCc
Q 003996 583 F---CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVP-CFQSL 657 (780)
Q Consensus 583 L---~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~-~l~~L 657 (780)
| .+.+ ..|...++ .++.|.-+...+. ...+..++.+++|++|+|++|.+..+ .|..+. .+++|
T Consensus 104 L~L~~N~l~~~~~~~l~---~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~~l~~L 171 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQ---GKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTV-----NFAELAASSDTL 171 (487)
T ss_dssp EECCSSCCCCEEECCCS---SCEEEECCSSCCC----SGGGBCGGGGSSEEEEECTTSCCCEE-----EGGGGGGGTTTC
T ss_pred EECcCCcCCCCCccccC---CCCEEECCCCCCC----CCCchhhcCCCCCCEEECCCCCCCCc-----ChHHHhhhCCcc
Confidence 4 1111 11111110 0011100000000 00122445677777777777776643 222333 56777
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccC
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSE 737 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~ 737 (780)
+.|+|++|. +..++ ....+++|+.|+++++. +..++. .+..+++|+.|+|+++ .+..+|.. ...
T Consensus 172 ~~L~Ls~N~-l~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~l~~L~~L~Ls~N-~l~~lp~~--l~~ 235 (487)
T 3oja_A 172 EHLNLQYNF-IYDVK---GQVVFAKLKTLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKA--LRF 235 (487)
T ss_dssp CEEECTTSC-CCEEE---CCCCCTTCCEEECCSSC-CCEECG--------GGGGGTTCSEEECTTS-CCCEECTT--CCC
T ss_pred cEEecCCCc-ccccc---ccccCCCCCEEECCCCC-CCCCCH--------hHcCCCCccEEEecCC-cCcccchh--hcc
Confidence 777777775 65553 23357777777777543 444443 3556778888888775 46666433 356
Q ss_pred CcccceeecccCCCC
Q 003996 738 WPALKNLVACNCDKI 752 (780)
Q Consensus 738 ~p~L~~L~i~~C~~L 752 (780)
+|+|+.|++.+|+-.
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 778888888777643
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.15 E-value=1.3e-10 Score=134.18 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=76.4
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
.+..+++|++|++++|.+... ..|.++..+++|+.|++++|. +...+ ...+..+++|+.|++++|.-....+.
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~- 467 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVK----DAQSPFQNLHLLKVLNLSHSL-LDISS-EQLFDGLPALQHLNLQGNHFPKGNIQ- 467 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECC----TTCCTTTTCTTCCEEECTTCC-CBTTC-TTTTTTCTTCCEEECTTCBCGGGEEC-
T ss_pred HhcCCccCCeEECCCCcCCCc----ccchhhhCcccCCEEECCCCc-cCCcC-HHHHhCCCCCCEEECCCCCCCccccc-
Confidence 445567777777777666532 122346777888888888886 44442 24567788888888887653221111
Q ss_pred CcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCC
Q 003996 701 DRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKIT 753 (780)
Q Consensus 701 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~ 753 (780)
. ...+..+++|++|++++|. +..+.+ .....+++|+.|++++|+ ++
T Consensus 468 ~----~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~ 513 (606)
T 3t6q_A 468 K----TNSLQTLGRLEILVLSFCD-LSSIDQ-HAFTSLKMMNHVDLSHNR-LT 513 (606)
T ss_dssp S----SCGGGGCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CC
T ss_pred c----chhhccCCCccEEECCCCc-cCccCh-hhhccccCCCEEECCCCc-cC
Confidence 0 0135678899999998874 555532 233578899999998885 44
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.15 E-value=2.4e-10 Score=127.23 Aligned_cols=214 Identities=15% Similarity=0.179 Sum_probs=127.1
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
....++.+.+..+.+..++....+++|++|.+.++... .+++ |.++++|++|+|+++.+..+.. ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC---Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 35689999999998888877678999999999988763 5555 7999999999999999988775 788999998
Q ss_pred h----hhcccCCCCCCCccCCHHHH------------hccccccc---cccccccccccccccccccccccccccccccc
Q 003996 583 F----CREVKTPSTSPNRQESQEEL------------TASSDEIS---SDTSTLLFNEKVVLPNLEALELNAINADEIWH 643 (780)
Q Consensus 583 L----~~~l~~P~~~l~~~~~l~~L------------~~~~~~~~---~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 643 (780)
| +.....|. +.....++.| +..++.++ ..........+..+++|+.|+++++.++.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--
Confidence 8 21111121 1000111111 00111111 000001112244455555566655554432
Q ss_pred ccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCC
Q 003996 644 YNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGL 723 (780)
Q Consensus 644 ~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~ 723 (780)
| .+..+++|+.|++++|. +..++ .++.+++|+.|++++|. ++.+ ..+..+++|++|++++|
T Consensus 193 ----~-~l~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~---------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 193 ----S-VLAKLTNLESLIATNNQ-ISDIT---PLGILTNLDELSLNGNQ-LKDI---------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp ----G-GGGGCTTCSEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCC---------GGGGGCTTCSEEECCSS
T ss_pred ----h-hhccCCCCCEEEecCCc-ccccc---cccccCCCCEEECCCCC-cccc---------hhhhcCCCCCEEECCCC
Confidence 1 14555666666666664 44442 24556666666666543 3222 13456777788887776
Q ss_pred CCccccCCCCCccCCcccceeecccCC
Q 003996 724 PELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 724 ~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
. +..++. ...+++|+.|.+++|.
T Consensus 254 ~-l~~~~~---~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 254 Q-ISNLAP---LSGLTKLTELKLGANQ 276 (466)
T ss_dssp C-CCCCGG---GTTCTTCSEEECCSSC
T ss_pred c-cccchh---hhcCCCCCEEECCCCc
Confidence 3 444421 3567788888877774
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.15 E-value=1.1e-10 Score=129.41 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=75.2
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
.+..+++|++|++++|.+..+ .|.+++.+++|+.|+|++|. +..++ ...+..+++|+.|+++++. +..++.
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~- 364 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKI-----DDNAFWGLTHLLKLNLSQNF-LGSID-SRMFENLDKLEVLDLSYNH-IRALGD- 364 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSC-CCEEC-GGGGTTCTTCCEEECCSSC-CCEECT-
T ss_pred hcccCCCCCEEECCCCccccc-----ChhHhcCcccCCEEECCCCc-cCCcC-hhHhcCcccCCEEECCCCc-ccccCh-
Confidence 355677777777777777643 23356777888888888875 55552 2456778888888888654 443322
Q ss_pred CcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 701 DRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 701 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
..+..+++|++|+|.++ +++.++... ...+++|+.|++++||
T Consensus 365 ------~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 365 ------QSFLGLPNLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ------TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred ------hhccccccccEEECCCC-ccccCCHhH-hccCCcccEEEccCCC
Confidence 24567888888888885 466664322 2467888888887655
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=1.4e-10 Score=122.88 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=133.0
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
+..++.+.+.++.+..++. ...+++|++|.+.++... .+++..|.++++|++|+|++|.+..++. .+. ++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPP-NLP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCSSCCCSCCS-SCC--TTCC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCCCcCCccCc-ccc--ccCC
Confidence 3567788888777766543 246778888888776653 4545557778888888888887776554 222 4455
Q ss_pred Hh---hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCc
Q 003996 582 RF---CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 582 ~L---~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L 657 (780)
+| .+.+ .+|...+.....++.|--+...+. ........+..+ +|++|+++++.++.+ |..+ +++|
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l-~L~~L~l~~n~l~~l------~~~~--~~~L 195 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE--NSGFEPGAFDGL-KLNYLRISEAKLTGI------PKDL--PETL 195 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB--GGGSCTTSSCSC-CCSCCBCCSSBCSSC------CSSS--CSSC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccc--cCCCCcccccCC-ccCEEECcCCCCCcc------Cccc--cCCC
Confidence 44 1111 112211110001111100000000 000011223333 677777777776643 3222 2689
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccC
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSE 737 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~ 737 (780)
+.|+++++. ++.++ ...+..+++|+.|+++++. +..++. ..+..+++|++|+++++ ++..++.. ...
T Consensus 196 ~~L~l~~n~-i~~~~-~~~l~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~ 262 (332)
T 2ft3_A 196 NELHLDHNK-IQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIEN-------GSLSFLPTLRELHLDNN-KLSRVPAG--LPD 262 (332)
T ss_dssp SCCBCCSSC-CCCCC-TTSSTTCTTCSCCBCCSSC-CCCCCT-------TGGGGCTTCCEEECCSS-CCCBCCTT--GGG
T ss_pred CEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCc-CCcCCh-------hHhhCCCCCCEEECCCC-cCeecChh--hhc
Confidence 999999886 66653 2467789999999998754 444432 24668899999999997 57788543 467
Q ss_pred CcccceeecccCCCCCCcCC
Q 003996 738 WPALKNLVACNCDKITLSQN 757 (780)
Q Consensus 738 ~p~L~~L~i~~C~~L~~~~~ 757 (780)
+++|+.|++++|+ ++.+|.
T Consensus 263 l~~L~~L~l~~N~-l~~~~~ 281 (332)
T 2ft3_A 263 LKLLQVVYLHTNN-ITKVGV 281 (332)
T ss_dssp CTTCCEEECCSSC-CCBCCT
T ss_pred CccCCEEECCCCC-CCccCh
Confidence 9999999999986 776653
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.8e-10 Score=136.07 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=48.2
Q ss_pred ccceEEEeecCc-ccc--cCC--------CCCCCCccEEEeecCCCCCCcccch-HHHhcCCcceEEEecCCCcCccccc
Q 003996 505 KKCYAISLLNSS-IHE--VSE--------EFECPQLEFLYIDPQITFSEVNIPD-NFFKGMKKLRVVDLTRIEFGQLRSL 572 (780)
Q Consensus 505 ~~~r~lsl~~~~-~~~--~~~--------~~~~~~Lr~L~l~~~~~~~~~~i~~-~~~~~l~~LrvLdL~~~~~~~L~~L 572 (780)
.++++|.+..|. +.. +|. ...+++|+.|.+.++... .+|. ..|.++++|++|+|++|.+..++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-- 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNKVRHLE-- 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSCCCBCC--
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCCcccch--
Confidence 467777777775 442 332 124557777777776653 5665 34677777777777777777666
Q ss_pred ccCCChhHHHh
Q 003996 573 TLGKLPKVTRF 583 (780)
Q Consensus 573 ~i~~L~~L~~L 583 (780)
.++++++|++|
T Consensus 590 ~~~~L~~L~~L 600 (876)
T 4ecn_A 590 AFGTNVKLTDL 600 (876)
T ss_dssp CCCTTSEESEE
T ss_pred hhcCCCcceEE
Confidence 56677777766
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.13 E-value=1.6e-10 Score=118.61 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=135.7
Q ss_pred CCchhhhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCC
Q 003996 498 WPDEDALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKL 577 (780)
Q Consensus 498 ~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L 577 (780)
++.......++++.+.++.+..++....+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..++.-.++++
T Consensus 56 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 132 (272)
T 3rfs_A 56 VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL---QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132 (272)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc---CccChhHhcCCcCCCEEECCCCcCCccCHHHhccC
Confidence 344445578999999999988777667899999999998876 46777778999999999999999988776447889
Q ss_pred hhHHHh---hhcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcccc
Q 003996 578 PKVTRF---CREV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPC 653 (780)
Q Consensus 578 ~~L~~L---~~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~ 653 (780)
++|++| .+.+ ..|. ..+..+++|++|++++|+++.+. |..++.
T Consensus 133 ~~L~~L~L~~n~l~~~~~----------------------------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~ 179 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPK----------------------------GVFDKLTNLTELDLSYNQLQSLP-----EGVFDK 179 (272)
T ss_dssp TTCCEEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCC-----TTTTTT
T ss_pred CCCCEEECCCCccCccCH----------------------------HHhccCccCCEEECCCCCcCccC-----HHHhcC
Confidence 999988 1111 1121 23567899999999999887543 334678
Q ss_pred ccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcccc
Q 003996 654 FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCL 729 (780)
Q Consensus 654 l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~ 729 (780)
+++|+.|++++|. +..+++ ..+..+++|+.|+++++.- .+.+|+|+.|.++.+.--..+
T Consensus 180 l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~---------------~~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 180 LTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPW---------------DCTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCB---------------CCCTTTTHHHHHHHHHTGGGB
T ss_pred CccCCEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCCc---------------cccCcHHHHHHHHHHhCCCcc
Confidence 8999999999997 777642 4578899999999997642 134678888887765433444
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.12 E-value=3.5e-10 Score=125.10 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=41.0
Q ss_pred hccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh
Q 003996 504 LKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L 583 (780)
...++++.+..+.+..++ ...+++|+.|.+.++... .++ +.++++|++|+|++|.+..++ ++++++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~---~~~---~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLT---NLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS---CCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCc---eee---cCCCCcCCEEECCCCcCCeec---CCCCCcCCEE
Confidence 356666777666665554 345666677766665543 232 466666666666666665532 4555555555
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.12 E-value=5.4e-11 Score=125.17 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=43.3
Q ss_pred ccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccc
Q 003996 505 KKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLR 570 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~ 570 (780)
.+++++.+.++.+..++. ...+++|++|.+.++... .+++ |..+++|++|+|++|.+..++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD--LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE---EEEE--ETTCTTCCEEECCSSEEEEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC---cchh--hhhcCCCCEEECcCCcccccc
Confidence 467888888887766542 246788888888877653 3333 678888888888888776543
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.12 E-value=4.9e-10 Score=134.16 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=71.8
Q ss_pred EEeccccccCCchhhhccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCc
Q 003996 489 LVRNEAVWEWPDEDALKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEF 566 (780)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~ 566 (780)
...+..+...|. .+..+++|.++.|.+..+.. ...+++|++|.+.++... ..+++..|.++++|++|+|++|.+
T Consensus 10 dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 10 FYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCC
T ss_pred EccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcC
Confidence 333444555565 66899999999999877643 257999999999988654 677777789999999999999999
Q ss_pred CcccccccCCChhHHHh
Q 003996 567 GQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 567 ~~L~~L~i~~L~~L~~L 583 (780)
..+..-.+++|++|++|
T Consensus 86 ~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CEECTTSSCSCSSCCCE
T ss_pred cccCHhHccCCcccCEe
Confidence 88633368899999988
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.11 E-value=1.3e-10 Score=134.48 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=26.0
Q ss_pred CCccEEEeecCCCCCCcccch-HHHhcCCcceEEEecCCCcC-cccccccCCChhHHHh
Q 003996 527 PQLEFLYIDPQITFSEVNIPD-NFFKGMKKLRVVDLTRIEFG-QLRSLTLGKLPKVTRF 583 (780)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~i~~-~~~~~l~~LrvLdL~~~~~~-~L~~L~i~~L~~L~~L 583 (780)
++|+.|.+.++... .+|. ..|.++++|++|+|++|.+. .++ .++++++|++|
T Consensus 305 ~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L 358 (636)
T 4eco_A 305 EKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASL 358 (636)
T ss_dssp GTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEE
T ss_pred CCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEE
Confidence 55555555555432 3443 13455555555555555555 444 34444444444
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=3e-10 Score=116.89 Aligned_cols=196 Identities=17% Similarity=0.162 Sum_probs=136.8
Q ss_pred CcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-hhcccCCCCC
Q 003996 515 SSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-CREVKTPSTS 593 (780)
Q Consensus 515 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-~~~l~~P~~~ 593 (780)
.++..+|... .+++++|.+.++.. ..++...|.++++|++|+|++|.+..++.-.++++++|++| .....+.
T Consensus 17 ~~l~~ip~~l-~~~l~~L~ls~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 89 (276)
T 2z62_A 17 LNFYKIPDNL-PFSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--- 89 (276)
T ss_dssp SCCSSCCSSS-CTTCCEEECTTCCC---CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---
T ss_pred CCccccCCCC-CCCccEEECCCCcc---cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC---
Confidence 3444455432 36799999998876 35666678999999999999999988665457888888887 1111110
Q ss_pred CCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccc
Q 003996 594 PNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFS 673 (780)
Q Consensus 594 l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~ 673 (780)
......+..+++|++|++.++++..+.. ..++.+++|+.|+++++. ++.++.
T Consensus 90 ----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~l 141 (276)
T 2z62_A 90 ----------------------SLALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNL-IQSFKL 141 (276)
T ss_dssp ----------------------EECTTTTTTCTTCCEEECTTSCCCCSTT-----CCCTTCTTCCEEECCSSC-CCCCCC
T ss_pred ----------------------ccChhhhcCCccccEEECCCCCccccCc-----hhcccCCCCCEEECcCCc-cceecC
Confidence 0001246678999999999988875433 237889999999999996 665321
Q ss_pred hhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCccc----EEeccCCCCccccCCCCCccCCcccceeecccC
Q 003996 674 ASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVT----TLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 749 (780)
Q Consensus 674 ~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~----~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 749 (780)
...+..+++|+.|+++++. ++.++. ..+..+++|+ +|+++++ .+..++... ...++|+.|++++|
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n 210 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNK-IQSIYC-------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTN 210 (276)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCEECG-------GGGHHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSS
T ss_pred chhhccCCCCCEEECCCCC-CCcCCH-------HHhhhhhhccccceeeecCCC-cccccCccc--cCCCcccEEECCCC
Confidence 2578899999999999764 444432 1334455555 8899886 467774433 34568999999998
Q ss_pred CCCCCcCC
Q 003996 750 DKITLSQN 757 (780)
Q Consensus 750 ~~L~~~~~ 757 (780)
. ++.+|.
T Consensus 211 ~-l~~~~~ 217 (276)
T 2z62_A 211 Q-LKSVPD 217 (276)
T ss_dssp C-CSCCCT
T ss_pred c-eeecCH
Confidence 7 776664
No 67
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=2.9e-10 Score=121.37 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=115.2
Q ss_pred ccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcce-EEEecCCCcCcccccccCCChhHH
Q 003996 505 KKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLR-VVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~Lr-vLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
..+++|.+..|.+..++.. ..+++|++|.+.++... ..++.+.|.+++.|. +++++++.+..++.-.+.+|++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~--~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC--CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC--CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 4455555555555555432 24555555555555433 334444455555443 344444555444332344555555
Q ss_pred Hh---hhcccC-CCCCCCccCCHHHHhccccccccccccccccccccccccccccccc-ccccccccccCCCCccccc-c
Q 003996 582 RF---CREVKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNA-INADEIWHYNQLPGMVPCF-Q 655 (780)
Q Consensus 582 ~L---~~~l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~~~~~lP~~~~~l-~ 655 (780)
+| ...+.. |. .......++..|++.+ +++..+... .+..+ .
T Consensus 108 ~L~l~~n~l~~~~~----------------------------~~~~~~~~l~~l~l~~~~~i~~l~~~-----~f~~~~~ 154 (350)
T 4ay9_X 108 YLLISNTGIKHLPD----------------------------VHKIHSLQKVLLDIQDNINIHTIERN-----SFVGLSF 154 (350)
T ss_dssp EEEEEEECCSSCCC----------------------------CTTCCBSSCEEEEEESCTTCCEECTT-----SSTTSBS
T ss_pred cccccccccccCCc----------------------------hhhcccchhhhhhhcccccccccccc-----chhhcch
Confidence 44 111111 11 0111223344455543 344433221 22333 4
Q ss_pred CccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCc
Q 003996 656 SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHT 735 (780)
Q Consensus 656 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~ 735 (780)
.|+.|+++++. ++.++ +......+|+.|.+.+++.++.++. ..+..+++|++|+|+++ +++.++.
T Consensus 155 ~l~~L~L~~N~-i~~i~--~~~f~~~~L~~l~l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N-~l~~lp~---- 219 (350)
T 4ay9_X 155 ESVILWLNKNG-IQEIH--NSAFNGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDISRT-RIHSLPS---- 219 (350)
T ss_dssp SCEEEECCSSC-CCEEC--TTSSTTEEEEEEECTTCTTCCCCCT-------TTTTTEECCSEEECTTS-CCCCCCS----
T ss_pred hhhhhcccccc-ccCCC--hhhccccchhHHhhccCCcccCCCH-------HHhccCcccchhhcCCC-CcCccCh----
Confidence 67888888875 77775 3444567788888888888877764 23567889999999986 6888843
Q ss_pred cCCcccceeecccCCCCCCcC
Q 003996 736 SEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 736 ~~~p~L~~L~i~~C~~L~~~~ 756 (780)
..|.+|++|.+.+|..|+.+|
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCC
T ss_pred hhhccchHhhhccCCCcCcCC
Confidence 357889999999999999888
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.11 E-value=1.2e-10 Score=122.41 Aligned_cols=195 Identities=15% Similarity=0.109 Sum_probs=115.6
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh----hhcccCCCCCCCccCCH
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF----CREVKTPSTSPNRQESQ 600 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L----~~~l~~P~~~l~~~~~l 600 (780)
.+++|+.|.+.++... .+++..|.++++|++|+|++|.+..... ++++++|++| +....+|.. ..+
T Consensus 32 ~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~-----~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSI 101 (317)
T ss_dssp TGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEEC-----TTC
T ss_pred cCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCC-----CCc
Confidence 4679999999998763 5677778999999999999999887553 7788888877 111111110 001
Q ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhc
Q 003996 601 EELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSL 680 (780)
Q Consensus 601 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L 680 (780)
+.|--+...+. .. ....+++|++|++++|.++.+.. ..++.+++|+.|+|++|. +..+++......+
T Consensus 102 ~~L~l~~n~l~-----~~--~~~~~~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l 168 (317)
T 3o53_A 102 ETLHAANNNIS-----RV--SCSRGQGKKNIYLANNKITMLRD-----LDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168 (317)
T ss_dssp CEEECCSSCCS-----EE--EECCCSSCEEEECCSSCCCSGGG-----BCTGGGSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred CEEECCCCccC-----Cc--CccccCCCCEEECCCCCCCCccc-----hhhhccCCCCEEECCCCC-CCcccHHHHhhcc
Confidence 11100000000 00 11235667777777776664322 235667777777777775 5554322223467
Q ss_pred cCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 681 EQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 681 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
++|++|+++++. ++.++ ....+++|++|+++++ +++.++.. ...+++|+.|++++|. ++.+|
T Consensus 169 ~~L~~L~L~~N~-l~~~~---------~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~-l~~l~ 230 (317)
T 3o53_A 169 DTLEHLNLQYNF-IYDVK---------GQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK-LVLIE 230 (317)
T ss_dssp TTCCEEECTTSC-CCEEE---------CCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-CCEEC
T ss_pred CcCCEEECCCCc-Ccccc---------cccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCc-ccchh
Confidence 777777777654 43332 1234677777777765 45566332 3456777777777763 55555
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.10 E-value=1.2e-10 Score=130.16 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=135.3
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh---hhcc-cCCCCCCCccCCH
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---CREV-KTPSTSPNRQESQ 600 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---~~~l-~~P~~~l~~~~~l 600 (780)
.+++|++|.+.++... .+++..|.++++|++|+|++|.+..+.. ++++++|++| .+.+ .+|.. ..+
T Consensus 32 ~~~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTC
T ss_pred cCCCccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCc
Confidence 4569999999998764 5666778999999999999999987553 7888888888 1111 22210 001
Q ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhc
Q 003996 601 EELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSL 680 (780)
Q Consensus 601 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L 680 (780)
+.|--+...+. .. ....+++|+.|++++|.+..+ .|..++.+++|+.|+|++|. +...++......+
T Consensus 102 ~~L~L~~N~l~-----~~--~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l 168 (487)
T 3oja_A 102 ETLHAANNNIS-----RV--SCSRGQGKKNIYLANNKITML-----RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168 (487)
T ss_dssp CEEECCSSCCC-----CE--EECCCSSCEEEECCSSCCCSG-----GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred CEEECcCCcCC-----CC--CccccCCCCEEECCCCCCCCC-----CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhC
Confidence 11100000000 01 123468899999999888754 34457889999999999996 6665332233479
Q ss_pred cCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcCC
Q 003996 681 EQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQN 757 (780)
Q Consensus 681 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~~ 757 (780)
++|+.|++++|. +..++ ....+++|++|+|+++ .+..+++. ...+++|+.|++++|. |+.+|.
T Consensus 169 ~~L~~L~Ls~N~-l~~~~---------~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~lp~ 231 (487)
T 3oja_A 169 DTLEHLNLQYNF-IYDVK---------GQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK-LVLIEK 231 (487)
T ss_dssp TTCCEEECTTSC-CCEEE---------CCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-CCEECT
T ss_pred CcccEEecCCCc-ccccc---------ccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-Ccccch
Confidence 999999999765 54443 2346899999999997 57788543 4678999999999986 776663
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.10 E-value=4.6e-10 Score=128.16 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=42.7
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
.+++.|.+.+|.+..++. .+++|++|.+.+|.. ..+|. .+++|++|+|++|.+..++.
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l---~~lp~----~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL---TSLPV----LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC---SCCCC----CCTTCCEEEECSCCCCCCCC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC---CcCCC----CCCCCCEEECcCCcCCCCCC
Confidence 577888888888777765 577888888887765 34554 56788888888887776554
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=2.3e-10 Score=132.06 Aligned_cols=114 Identities=20% Similarity=0.168 Sum_probs=79.4
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
.+..+++|++|++++|.+.. ..+|.+++.+++|+.|+|++|. +..++ ...+..+++|+.|++++|. +..++.
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~- 514 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKD----NTLSNVFANTTNLTFLDLSKCQ-LEQIS-WGVFDTLHRLQLLNMSHNN-LLFLDS- 514 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CSCEEG-
T ss_pred hhcCCCCCCEEECCCCcCCC----cchHHhhccCCCCCEEECCCCc-CCccC-hhhhcccccCCEEECCCCc-CCCcCH-
Confidence 45667788888888877653 1245567788888888888886 55553 2456788888888888764 444322
Q ss_pred CcccccccccccCcccEEeccCCCCccccCCCCCccCCc-ccceeecccCCC
Q 003996 701 DRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWP-ALKNLVACNCDK 751 (780)
Q Consensus 701 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p-~L~~L~i~~C~~ 751 (780)
..+..+++|++|+|+++. ++.++.. ...+| +|+.|++.++|-
T Consensus 515 ------~~~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 515 ------SHYNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ------GGTTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEEECCSCCC
T ss_pred ------HHccCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEEEccCCCc
Confidence 245678889999998874 7777543 45676 588998877663
No 72
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=3.3e-10 Score=130.65 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=75.5
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCcc--ccchhhHhhccCCcEEEEecCchhHHhh
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKY--IFSASTIQSLEQLQHLEIRLCKSLQEII 698 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~--l~~~~~l~~L~~L~~L~l~~c~~l~~l~ 698 (780)
.+..+++|++|++++|.+.. ..|..++.+++|+.|++++|. +.. +| ..+..+++|+.|++++|. +..++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~ 489 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKI-----DFDGIFLGLTSLNTLKMAGNS-FKDNTLS--NVFANTTNLTFLDLSKCQ-LEQIS 489 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEE-----CCTTTTTTCTTCCEEECTTCE-EGGGEEC--SCCTTCTTCCEEECTTSC-CCEEC
T ss_pred hhhccccCCEEECcCCCCCc-----cchhhhcCCCCCCEEECCCCc-CCCcchH--HhhccCCCCCEEECCCCc-CCccC
Confidence 34566777777777766653 234456677777777777775 433 22 456677788888877664 33332
Q ss_pred ccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcCC
Q 003996 699 SEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQN 757 (780)
Q Consensus 699 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~~ 757 (780)
. ..+..+++|++|+|+++. +..+. +.....+++|+.|++++|+ ++.+|.
T Consensus 490 ~-------~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 490 W-------GVFDTLHRLQLLNMSHNN-LLFLD-SSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp T-------TTTTTCTTCCEEECCSSC-CSCEE-GGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred h-------hhhcccccCCEEECCCCc-CCCcC-HHHccCCCcCCEEECCCCc-CcccCH
Confidence 2 245677888888888874 44442 1223567888888888886 777774
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.10 E-value=2.6e-11 Score=128.79 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=41.5
Q ss_pred ccceEEEeecCcccccC-CCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc-ccccccCCChhHHH
Q 003996 505 KKCYAISLLNSSIHEVS-EEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ-LRSLTLGKLPKVTR 582 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~-L~~L~i~~L~~L~~ 582 (780)
..++.+.+..+.+...+ ....+++|++|.+.++... ....+..+.++++|++|+|++|.+.. ... .++++++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE--VSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC--HHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcC--HHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCE
Confidence 34566666666554332 2235677777777665432 22123446777777777777776553 111 2445555555
Q ss_pred h
Q 003996 583 F 583 (780)
Q Consensus 583 L 583 (780)
|
T Consensus 147 L 147 (336)
T 2ast_B 147 L 147 (336)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=3.2e-10 Score=110.25 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=56.5
Q ss_pred ccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcc
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRT 703 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~ 703 (780)
.+++|++|++++|.++. ..|..++.+++|+.|++++|. +... ....+..+++|++|++++|..+..++
T Consensus 86 ~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~----- 153 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTS-----DKIPNLSGLTSLTLLDISHSA-HDDS-ILTKINTLPKVNSIDLSYNGAITDIM----- 153 (197)
T ss_dssp TCTTCCEEEEECTTCBG-----GGSCCCTTCTTCCEEECCSSB-CBGG-GHHHHTTCSSCCEEECCSCTBCCCCG-----
T ss_pred cCCCCCEEEeECCccCc-----ccChhhcCCCCCCEEEecCCc-cCcH-hHHHHhhCCCCCEEEccCCCCccccH-----
Confidence 45556666666655542 122335556666666666664 4331 12455566666666666554343332
Q ss_pred cccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 704 DQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 704 ~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+..+|+|++|++++|. +..++ ....+|+|+.|++++++
T Consensus 154 ----~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 154 ----PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ----GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred ----hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 24456666666666653 44442 22456666666666554
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=4.6e-10 Score=129.44 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=43.2
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCc
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
+..+++|++|+++++.+++ +|.+++.+++|++|++++|. +..+++ ..+..+++|+.|++++|.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~------lp~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE------LPSGLVGLSTLKKLVLSANK-FENLCQ-ISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC------CCSSCCSCTTCCEEECTTCC-CSBGGG-GCGGGCTTCSEEECCSCS
T ss_pred hccccCCCEEeccCCccCC------CChhhcccccCCEEECccCC-cCcCch-hhhhccCcCCEEECCCCC
Confidence 5567788888888877763 44457777788888888775 554421 356677777777777664
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.09 E-value=5.3e-10 Score=119.35 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=55.6
Q ss_pred cccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCccccc
Q 003996 627 NLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQV 706 (780)
Q Consensus 627 ~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 706 (780)
.|+.|++++|.+++++.+ .....+|+.|.++++..++.+| ...+..+++|+.|+++++ .++.++.
T Consensus 155 ~l~~L~L~~N~i~~i~~~------~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N-~l~~lp~------- 219 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNS------AFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRT-RIHSLPS------- 219 (350)
T ss_dssp SCEEEECCSSCCCEECTT------SSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTS-CCCCCCS-------
T ss_pred hhhhhccccccccCCChh------hccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCC-CcCccCh-------
Confidence 455666666666544332 3334556666666655566664 124456666666666643 3554442
Q ss_pred ccccccCcccEEeccCCCCccccCCCCCccCCcccceeecc
Q 003996 707 TAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVAC 747 (780)
Q Consensus 707 ~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~ 747 (780)
..|.+|+.|.+.++.+++.+|. ...+++|+.+.+.
T Consensus 220 ---~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 220 ---YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp ---SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred ---hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence 2456666666666666666642 2345666666553
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.08 E-value=2.2e-10 Score=126.68 Aligned_cols=116 Identities=16% Similarity=0.028 Sum_probs=61.2
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
+..+++|+.|++++|.++. +| ++.+++|+.|+++++. ++.+| .+.+++|+.|.++. +.++.+....
T Consensus 208 l~~l~~L~~L~Ls~N~l~~------ip--~~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~-n~L~~L~l~~ 273 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE------ID--VTPLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQ-TDLLEIDLTH 273 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC------CC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTT-CCCSCCCCTT
T ss_pred cccCCCCCEEECcCCcccc------cC--ccccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccC-CCCCEEECCC
Confidence 4556777777777776653 34 5566777777777764 55543 23455555554442 2233222110
Q ss_pred cc-cccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 702 RT-DQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 702 ~~-~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
-. .+....+.+++|+.|++++|+.++.++. .+++|+.|.+++|++|+.+.
T Consensus 274 n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 274 NTQLIYFQAEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CTTCCEEECTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEE
T ss_pred CccCCcccccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCEEE
Confidence 00 0001234567777777777766666631 23555555555555555444
No 78
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.07 E-value=3.2e-10 Score=134.36 Aligned_cols=116 Identities=13% Similarity=-0.020 Sum_probs=63.3
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
+..+++|++|+|++|++. +.+|.+++.+++|+.|+|+++.--..+| ..++.|++|+.|+++++.-...+|.
T Consensus 628 ~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~-- 698 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLS-----GYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQ-- 698 (768)
T ss_dssp CSSSBCCCEEECCSSCCB-----SCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCG--
T ss_pred hhccccccEEECcCCccc-----ccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCCh--
Confidence 344556666666666554 2455556666666666666665223444 4566666666666665443223332
Q ss_pred cccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCc
Q 003996 702 RTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLS 755 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~ 755 (780)
.++.+++|++|++++++--..+|.. +.|..+..+.+.+||.|--.
T Consensus 699 ------~l~~l~~L~~L~ls~N~l~g~iP~~---~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 699 ------AMSALTMLTEIDLSNNNLSGPIPEM---GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp ------GGGGCCCCSEEECCSSEEEEECCSS---SSGGGSCGGGGCSCTEEEST
T ss_pred ------HHhCCCCCCEEECcCCcccccCCCc---hhhccCCHHHhcCCchhcCC
Confidence 4455666666666665433344322 33445555556666666533
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.07 E-value=9e-11 Score=123.16 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=114.4
Q ss_pred hccceEEEeecCccc-ccCCC---CCCCCccEEEeecCCCCCCcccchHHHhcC-----CcceEEEecCCCcCccccccc
Q 003996 504 LKKCYAISLLNSSIH-EVSEE---FECPQLEFLYIDPQITFSEVNIPDNFFKGM-----KKLRVVDLTRIEFGQLRSLTL 574 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~-~~~~~---~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l-----~~LrvLdL~~~~~~~L~~L~i 574 (780)
..+++++.+.++.+. .++.. ..+++|++|.+.++... .+| ..+..+ ++|++|+|++|.+..++.-.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA---TRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---SSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---chh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 357888888888776 34443 46788888888887764 334 335555 888888888888877653346
Q ss_pred CCChhHHHh-hhcccCCCCCCCccCCHHHHhcccccccccccccccccc--cccccccccccccccccccccccCCC-Cc
Q 003996 575 GKLPKVTRF-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEK--VVLPNLEALELNAINADEIWHYNQLP-GM 650 (780)
Q Consensus 575 ~~L~~L~~L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~l~~~~~lP-~~ 650 (780)
+++++|++| ...-.+ . .....+..+ ..+++|++|++++|.++.+.. +| ..
T Consensus 170 ~~l~~L~~L~Ls~N~l---------------------~--~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~ 223 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPE---------------------L--GERGLISALCPLKFPTLQVLALRNAGMETPSG---VCSAL 223 (312)
T ss_dssp CCCSSCCEEECCSCTT---------------------C--HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---HHHHH
T ss_pred ccCCCCCEEECCCCCc---------------------C--cchHHHHHHHhccCCCCCEEECCCCcCcchHH---HHHHH
Confidence 666666655 000000 0 000001112 456677777777766653211 11 11
Q ss_pred cccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccC
Q 003996 651 VPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLY 730 (780)
Q Consensus 651 ~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~ 730 (780)
+..+++|+.|+|+++. +...++.+.+..+++|+.|+++++. ++.++. ..+++|++|+++++ +++.++
T Consensus 224 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~----------~~~~~L~~L~Ls~N-~l~~~p 290 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK----------GLPAKLSVLDLSYN-RLDRNP 290 (312)
T ss_dssp HHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS----------SCCSEEEEEECCSS-CCCSCC
T ss_pred HhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhh----------hccCCceEEECCCC-CCCCCh
Confidence 2345677777777765 5543323344456677777776543 444432 12267777777765 456553
Q ss_pred CCCCccCCcccceeecccCC
Q 003996 731 PGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 731 ~~~~~~~~p~L~~L~i~~C~ 750 (780)
. ...+|+|+.|++.+++
T Consensus 291 ~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 S---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp C---TTTSCEEEEEECTTCT
T ss_pred h---HhhCCCCCEEeccCCC
Confidence 2 3456777777776654
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.06 E-value=1.1e-09 Score=128.15 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=69.0
Q ss_pred ccccCCchhhhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 494 AVWEWPDEDALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 494 ~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
.+...|. ..+..++++.+.++.+..++.. ..+++|++|.+.++... .+++..|.++++|++|+|++|.+..++.
T Consensus 15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccCh
Confidence 3444443 2347899999999998877653 47899999999988763 5666778999999999999999998886
Q ss_pred cccCCChhHHHh
Q 003996 572 LTLGKLPKVTRF 583 (780)
Q Consensus 572 L~i~~L~~L~~L 583 (780)
-.+++|++|++|
T Consensus 91 ~~~~~l~~L~~L 102 (680)
T 1ziw_A 91 KTFAFCTNLTEL 102 (680)
T ss_dssp TTTTTCTTCSEE
T ss_pred hhhccCCCCCEE
Confidence 558899999988
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.05 E-value=3.5e-10 Score=129.38 Aligned_cols=111 Identities=18% Similarity=0.316 Sum_probs=71.6
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCc--cccchhhHhhccCCcEEEEecCchhHHhhc
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLK--YIFSASTIQSLEQLQHLEIRLCKSLQEIIS 699 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~--~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~ 699 (780)
+..+++|++|+++++.+.. ..|..+..+++|+.|+|++|. +. .+| ..+..+++|+.|++++|. +..++.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~-l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRV-----AFNGIFNGLSSLEVLKMAGNS-FQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSP 487 (570)
T ss_dssp TTTCTTCCEEECTTSCCEE-----CCTTTTTTCTTCCEEECTTCE-EGGGEEC--SCCTTCTTCCEEECTTSC-CCEECT
T ss_pred hhcCCCCCEEeCcCCcccc-----cchhhhhcCCcCcEEECcCCc-Cccccch--hhhhcccCCCEEECCCCc-cccCCh
Confidence 4566777777777776653 234456677788888888876 33 343 456677888888887664 333321
Q ss_pred cCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 700 EDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 700 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
..+..+++|++|++++| ++..++.. ....+++|+.|++++||
T Consensus 488 -------~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 488 -------TAFNSLSSLQVLNMASN-QLKSVPDG-IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred -------hhhhcccCCCEEeCCCC-cCCCCCHH-HhhcccCCcEEEecCCc
Confidence 14556778888888776 46666432 23467788888877765
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.05 E-value=6.3e-10 Score=108.14 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=111.4
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
....++++.+.++.+..++....+++|++|.+.++.. ..++ .+..+++|++|+|++|.+....
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~---~~~~--~l~~l~~L~~L~l~~n~l~~~~------------ 104 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA---TNYN--PISGLSNLERLRIMGKDVTSDK------------ 104 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC---SCCG--GGTTCTTCCEEEEECTTCBGGG------------
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC---Ccch--hhhcCCCCCEEEeECCccCccc------------
Confidence 3467888999888888777556788999999988743 2332 3688899999999988775411
Q ss_pred hhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEee
Q 003996 583 FCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIV 662 (780)
Q Consensus 583 L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L 662 (780)
+..+..+++|++|++++|.+.. ..|..++.+++|+.|+|
T Consensus 105 ------------------------------------~~~l~~l~~L~~L~Ls~n~i~~-----~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 105 ------------------------------------IPNLSGLTSLTLLDISHSAHDD-----SILTKINTLPKVNSIDL 143 (197)
T ss_dssp ------------------------------------SCCCTTCTTCCEEECCSSBCBG-----GGHHHHTTCSSCCEEEC
T ss_pred ------------------------------------ChhhcCCCCCCEEEecCCccCc-----HhHHHHhhCCCCCEEEc
Confidence 1235567889999999988764 22334778899999999
Q ss_pred ccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 663 WGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 663 ~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
++|..+..+ +.+..+++|+.|++++|. ++.++ .+..+|+|++|++.+++
T Consensus 144 ~~n~~i~~~---~~l~~l~~L~~L~l~~n~-i~~~~---------~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDI---MPLKTLPELKSLNIQFDG-VHDYR---------GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCC---GGGGGCSSCCEEECTTBC-CCCCT---------TGGGCSSCCEEEECBC-
T ss_pred cCCCCcccc---HhhcCCCCCCEEECCCCC-CcChH---------HhccCCCCCEEEeeCcc
Confidence 999767766 467889999999998764 44432 45678999999998864
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.02 E-value=1.9e-10 Score=120.64 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=126.5
Q ss_pred CCCCccEEEeecCCCCCCcccchHHH-hcCCcceEEEecCCCcCcccccccCCC-----hhHHHh---hhcc-cCCCCCC
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFF-KGMKKLRVVDLTRIEFGQLRSLTLGKL-----PKVTRF---CREV-KTPSTSP 594 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~-~~l~~LrvLdL~~~~~~~L~~L~i~~L-----~~L~~L---~~~l-~~P~~~l 594 (780)
.+++|++|.+.++... ..+|..+| ..+++|++|+|++|.+..++. .++++ ++|++| .+.+ ..|
T Consensus 93 ~l~~L~~L~L~~n~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~---- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATRDA-WLAELQQWLKPGLKVLSIAQAHSLNFS---- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCB--SCCCCCSSSCCSCCCSEEEEESCBCSSSSS-HHHHHHTTCCTTCCEEEEESCSCCCCC----
T ss_pred CcCCccEEEccCCccc--chhHHHHHHhcCCCccEEEccCCCCcchhH-HHHHHHHhhcCCCcEEEeeCCCCccch----
Confidence 5889999999988765 45676654 899999999999999887643 34444 666666 1111 111
Q ss_pred CccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcc--ccccCccEEeeccCccCcccc
Q 003996 595 NRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMV--PCFQSLTRLIVWGCDKLKYIF 672 (780)
Q Consensus 595 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~--~~l~~L~~L~L~~c~~l~~l~ 672 (780)
...+..+++|++|++++|.+.... .+|..+ +.+++|+.|+|++|. ++.++
T Consensus 166 ------------------------~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 217 (312)
T 1wwl_A 166 ------------------------CEQVRVFPALSTLDLSDNPELGER---GLISALCPLKFPTLQVLALRNAG-METPS 217 (312)
T ss_dssp ------------------------TTTCCCCSSCCEEECCSCTTCHHH---HHHHHSCTTSCTTCCEEECTTSC-CCCHH
T ss_pred ------------------------HHHhccCCCCCEEECCCCCcCcch---HHHHHHHhccCCCCCEEECCCCc-CcchH
Confidence 135677899999999998764310 112123 678999999999996 77553
Q ss_pred chh--hHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 673 SAS--TIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 673 ~~~--~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.++ .+..+++|+.|+++++. +...+.. .....+++|++|+++++ +++.++... +++|+.|++++|.
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~------~~~~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNS-LRDAAGA------PSCDWPSQLNSLNLSFT-GLKQVPKGL----PAKLSVLDLSYNR 285 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSC-CCSSCCC------SCCCCCTTCCEEECTTS-CCSSCCSSC----CSEEEEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEECCCCc-CCcccch------hhhhhcCCCCEEECCCC-ccChhhhhc----cCCceEEECCCCC
Confidence 222 33577999999999754 4433210 13345789999999997 467774322 2899999999985
Q ss_pred CCCCcC
Q 003996 751 KITLSQ 756 (780)
Q Consensus 751 ~L~~~~ 756 (780)
++.+|
T Consensus 286 -l~~~p 290 (312)
T 1wwl_A 286 -LDRNP 290 (312)
T ss_dssp -CCSCC
T ss_pred -CCCCh
Confidence 77666
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.02 E-value=7.2e-10 Score=126.79 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=87.9
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhH-Hhhc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQ-EIIS 699 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~-~l~~ 699 (780)
.+..+++|+.|+++++.+..+.. +..+..+++|+.|++++|. +...+ ...+..+++|+.|++++|.-.. .++.
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~ 464 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPD 464 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTT----SCTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccccCCCCEEEccCCccccccc----hhhhhcCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCcCccccchh
Confidence 36678899999999988765322 1346788999999999997 44432 2567889999999999876432 2332
Q ss_pred cCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 700 EDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 700 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
.+..+++|++|++++|. +..+.+ .....+++|+.|++++|. ++.+|
T Consensus 465 --------~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~ 510 (570)
T 2z63_A 465 --------IFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMASNQ-LKSVP 510 (570)
T ss_dssp --------CCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CSCCC
T ss_pred --------hhhcccCCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCCCc-CCCCC
Confidence 56789999999999984 566632 233578999999999984 76655
No 85
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.1e-09 Score=129.54 Aligned_cols=204 Identities=14% Similarity=0.067 Sum_probs=145.2
Q ss_pred hhccceEEEeecCcccc------------------cCCCC---CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEe
Q 003996 503 ALKKCYAISLLNSSIHE------------------VSEEF---ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDL 561 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~------------------~~~~~---~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL 561 (780)
...+++.|.+.+|.+.. +|... .+++|++|.+.++... ..+|. .|.++++|++|+|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--~~iP~-~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--TQLPD-FLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--CSCCG-GGGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--ccChH-HHhCCCCCCEEEC
Confidence 34689999999999877 77664 6999999999998765 56774 4799999999999
Q ss_pred cCCC-cCc--ccccccCCCh-------hHHHh-hhcccCCCCCCCccCCHHHHhcccccccccccccccc--cccccccc
Q 003996 562 TRIE-FGQ--LRSLTLGKLP-------KVTRF-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFN--EKVVLPNL 628 (780)
Q Consensus 562 ~~~~-~~~--L~~L~i~~L~-------~L~~L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~--~~~~l~~L 628 (780)
++|. +.. +|. .+++|+ +|++| .....+ ..++. .+..+++|
T Consensus 523 s~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L--------------------------~~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 523 ACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNL--------------------------EEFPASASLQKMVKL 575 (876)
T ss_dssp TTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCC--------------------------CBCCCHHHHTTCTTC
T ss_pred cCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcC--------------------------CccCChhhhhcCCCC
Confidence 9998 764 554 344443 66655 110000 11223 57788999
Q ss_pred cccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccC-CcEEEEecCchhHHhhccCcccccc
Q 003996 629 EALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQ-LQHLEIRLCKSLQEIISEDRTDQVT 707 (780)
Q Consensus 629 ~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~-L~~L~l~~c~~l~~l~~~~~~~~~~ 707 (780)
+.|+|++|.+.. +| .++.+++|+.|+|++|. +..+| ..+..+++ |+.|++++|. +..++.
T Consensus 576 ~~L~Ls~N~l~~------lp-~~~~L~~L~~L~Ls~N~-l~~lp--~~l~~l~~~L~~L~Ls~N~-L~~lp~-------- 636 (876)
T 4ecn_A 576 GLLDCVHNKVRH------LE-AFGTNVKLTDLKLDYNQ-IEEIP--EDFCAFTDQVEGLGFSHNK-LKYIPN-------- 636 (876)
T ss_dssp CEEECTTSCCCB------CC-CCCTTSEESEEECCSSC-CSCCC--TTSCEECTTCCEEECCSSC-CCSCCS--------
T ss_pred CEEECCCCCccc------ch-hhcCCCcceEEECcCCc-cccch--HHHhhccccCCEEECcCCC-CCcCch--------
Confidence 999999988874 44 47889999999999997 66776 56888999 9999999765 555553
Q ss_pred ccc--ccCcccEEeccCCCCccccC---CCCCccCCcccceeecccCCCCCCcC
Q 003996 708 AYF--VFPRVTTLKLDGLPELRCLY---PGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 708 ~~~--~fp~L~~L~l~~~~~L~~~~---~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
.+. ..++|+.|+|+++.--..++ ........++|+.|++++|. ++.+|
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp 689 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFP 689 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCC
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccC
Confidence 222 23559999999975332222 11111245689999999986 66666
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.01 E-value=2.4e-10 Score=119.85 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=39.0
Q ss_pred cceEEEeecCccccc-CCC---CCCCCccEEEeecCCCCCCcccc---hHHHhcCCcceEEEecCCCcCcccccccCCCh
Q 003996 506 KCYAISLLNSSIHEV-SEE---FECPQLEFLYIDPQITFSEVNIP---DNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLP 578 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~-~~~---~~~~~Lr~L~l~~~~~~~~~~i~---~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~ 578 (780)
.++++.+.++.+... +.. ..+++|++|.+.++... ...+ ...+..+++|++|+|++|.+..+..-.+++++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA--TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS--STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc--chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 466666666665432 222 34666666666665543 2111 12234566666666666666554432344444
Q ss_pred hHHHh
Q 003996 579 KVTRF 583 (780)
Q Consensus 579 ~L~~L 583 (780)
+|++|
T Consensus 170 ~L~~L 174 (310)
T 4glp_A 170 ALTSL 174 (310)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 44444
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=1.1e-09 Score=110.81 Aligned_cols=151 Identities=17% Similarity=0.222 Sum_probs=118.1
Q ss_pred hccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
+..++++.+.++.+..++.. ..+++|++|.+.++... .+++..|.++++|++|+|++|.+..++.-.++++++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC---ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 46899999999998776543 47899999999998764 56777789999999999999999987754578888888
Q ss_pred Hh---hhccc-CCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCc
Q 003996 582 RF---CREVK-TPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 582 ~L---~~~l~-~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L 657 (780)
+| .+.+. +|. ..+..+++|++|+|++|.++.+.. ..++.+++|
T Consensus 111 ~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L 157 (251)
T 3m19_A 111 KLYLGGNQLKSLPS----------------------------GVFDRLTKLKELRLNTNQLQSIPA-----GAFDKLTNL 157 (251)
T ss_dssp EEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred EEEcCCCcCCCcCh----------------------------hHhccCCcccEEECcCCcCCccCH-----HHcCcCcCC
Confidence 88 11111 121 134678999999999999875433 257888999
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCc
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
+.|+|+++. ++.+++ ..+..+++|+.|+++++.
T Consensus 158 ~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTNQ-LQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCc-CCccCH-HHHhCCCCCCEEEeeCCc
Confidence 999999996 777752 467889999999998754
No 88
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.00 E-value=1e-09 Score=126.87 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=79.3
Q ss_pred ccccccccccccccccccccccCCCCccc--cccCccEEeeccCccCccccchhhHhhccCCcEEEEecCc------hhH
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVP--CFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK------SLQ 695 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~--~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~------~l~ 695 (780)
.+++|+.|+|++|.++.+ |..+. .+++|+.|+|++|. +..+| ..+..+++|+.|+++++. -..
T Consensus 486 ~l~~L~~L~Ls~N~l~~l------p~~~~~~~l~~L~~L~Ls~N~-l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKL------SDDFRATTLPYLVGIDLSYNS-FSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp TGGGCCEEECCSSCCCBC------CGGGSTTTCTTCCEEECCSSC-CSSCC--CGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred ccCCccEEECcCCcCCcc------ChhhhhccCCCcCEEECCCCC-CCCcC--hhhhcCCCCCEEECCCCcccccCcccc
Confidence 345899999999888743 44465 88999999999986 66676 567789999999996533 222
Q ss_pred HhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCC
Q 003996 696 EIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKI 752 (780)
Q Consensus 696 ~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L 752 (780)
.++ ..++.+++|++|+|+++. ++.+|.. .+++|+.|++++|+-.
T Consensus 557 ~~p--------~~l~~l~~L~~L~Ls~N~-l~~ip~~----~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 557 EWP--------EGITLCPSLTQLQIGSND-IRKVNEK----ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCC--------TTGGGCSSCCEEECCSSC-CCBCCSC----CCTTCCEEECCSCTTC
T ss_pred cCh--------HHHhcCCCCCEEECCCCc-CCccCHh----HhCcCCEEECcCCCCc
Confidence 222 256678999999999975 5888543 2389999999999744
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.00 E-value=1.3e-09 Score=127.45 Aligned_cols=225 Identities=16% Similarity=0.183 Sum_probs=113.4
Q ss_pred cceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh
Q 003996 506 KCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L 583 (780)
.++.+.+..+.+..+... ..+++|+.|.+.++... ..+|...|.++++|++|+|++|.+..+..-.+..+++|++|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG--QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE--EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc--cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 344555555544433211 24556666666555543 33444445666666666666665544333234455555554
Q ss_pred ---hhcc---cC-CCCCCCccCCHHHHhccccccccccccccc-ccccccccccccccccccccccccccCCC----Ccc
Q 003996 584 ---CREV---KT-PSTSPNRQESQEELTASSDEISSDTSTLLF-NEKVVLPNLEALELNAINADEIWHYNQLP----GMV 651 (780)
Q Consensus 584 ---~~~l---~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l~~~~~lP----~~~ 651 (780)
...+ .. |. .+....+++.|--+...+ .... ..+..+++|++|++++|.+..++.. .+| ..+
T Consensus 460 ~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l-----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~~ 532 (680)
T 1ziw_A 460 MLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNI-----ANINDDMLEGLEKLEILDLQHNNLARLWKH-ANPGGPIYFL 532 (680)
T ss_dssp ECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCGGGGST-TSTTSCCCTT
T ss_pred hhccccccccccCCc-ccccCCCCCEEECCCCCC-----CcCChhhhccccccCEEeCCCCCccccchh-hccCCcchhh
Confidence 0000 11 11 000000000000000000 0111 1245667777777777777665443 222 235
Q ss_pred ccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCC
Q 003996 652 PCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYP 731 (780)
Q Consensus 652 ~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~ 731 (780)
..+++|+.|+|+++. ++.+| ...+..+++|+.|++++ +.++.++. ..+..+++|++|+|+++ +++.++.
T Consensus 533 ~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~-N~l~~l~~-------~~~~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 533 KGLSHLHILNLESNG-FDEIP-VEVFKDLFELKIIDLGL-NNLNTLPA-------SVFNNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-------TTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred cCCCCCCEEECCCCC-CCCCC-HHHcccccCcceeECCC-CCCCcCCH-------hHhCCCCCCCEEECCCC-cCCccCh
Confidence 667777888887775 66664 12466777888888764 34555543 12345678888888776 4666632
Q ss_pred CCCccCCcccceeecccCC
Q 003996 732 GMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 732 ~~~~~~~p~L~~L~i~~C~ 750 (780)
......+++|+.|++.+||
T Consensus 602 ~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 602 KVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp HHHHHHHTTCSEEECTTCC
T ss_pred hHhcccccccCEEEccCCC
Confidence 1111146778888776644
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.99 E-value=8e-10 Score=115.79 Aligned_cols=207 Identities=11% Similarity=0.068 Sum_probs=128.2
Q ss_pred cceEEEeecCcccc-----cCCCCCCCCccEEEeecCCCCCCcccchHHH-hcCCcceEEEecCCCcCc----ccccccC
Q 003996 506 KCYAISLLNSSIHE-----VSEEFECPQLEFLYIDPQITFSEVNIPDNFF-KGMKKLRVVDLTRIEFGQ----LRSLTLG 575 (780)
Q Consensus 506 ~~r~lsl~~~~~~~-----~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~-~~l~~LrvLdL~~~~~~~----L~~L~i~ 575 (780)
.++++.+....+.. +.....+++|+.|.+.++... ...|..++ .++++|++|+|++|.+.. +....+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT--GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB--SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec--cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 46677776655421 112234567999999888764 44555444 889999999999998875 2334466
Q ss_pred CChhHHHh----hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcc
Q 003996 576 KLPKVTRF----CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMV 651 (780)
Q Consensus 576 ~L~~L~~L----~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~ 651 (780)
.+++|++| +.....|. ..+..+++|++|+|++|.+..... ...+.++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~ 193 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSC----------------------------EQVRAFPALTSLDLSDNPGLGERG-LMAALCP 193 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCT----------------------------TSCCCCTTCCEEECCSCTTCHHHH-HHTTSCT
T ss_pred hccCCCEEEeeCCCcchhhH----------------------------HHhccCCCCCEEECCCCCCccchh-hhHHHhh
Confidence 78888877 11111221 245677888888888877643110 0112234
Q ss_pred ccccCccEEeeccCccCccccchh--hHhhccCCcEEEEecCchhHHh-hccCcccccccccccCcccEEeccCCCCccc
Q 003996 652 PCFQSLTRLIVWGCDKLKYIFSAS--TIQSLEQLQHLEIRLCKSLQEI-ISEDRTDQVTAYFVFPRVTTLKLDGLPELRC 728 (780)
Q Consensus 652 ~~l~~L~~L~L~~c~~l~~l~~~~--~l~~L~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~ 728 (780)
+.+++|++|+|++|. ++.++... .+..+++|++|+++++. +..+ +.. ......+++|++|+|+++ +++.
T Consensus 194 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-----~~~~~~~~~L~~L~Ls~N-~l~~ 265 (310)
T 4glp_A 194 HKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-----APRCMWSSALNSLNLSFA-GLEQ 265 (310)
T ss_dssp TSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-----CSSCCCCTTCCCEECCSS-CCCS
T ss_pred hcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-----HHhccCcCcCCEEECCCC-CCCc
Confidence 677888888888885 66554221 24677888888888654 4433 210 012223478888888876 4666
Q ss_pred cCCCCCccCCcccceeecccCCCCCCcC
Q 003996 729 LYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 729 ~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
++... +++|+.|++++|. |+.+|
T Consensus 266 lp~~~----~~~L~~L~Ls~N~-l~~~~ 288 (310)
T 4glp_A 266 VPKGL----PAKLRVLDLSSNR-LNRAP 288 (310)
T ss_dssp CCSCC----CSCCSCEECCSCC-CCSCC
T ss_pred hhhhh----cCCCCEEECCCCc-CCCCc
Confidence 74322 3788888888875 66554
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.99 E-value=2.9e-09 Score=121.51 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=119.4
Q ss_pred EEeccccccCCchhhhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc
Q 003996 489 LVRNEAVWEWPDEDALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~ 568 (780)
...+..+...+. ...+++.|.+.+|.+..++. .+++|++|.+.++... .+|. .+++|+.|+|++|.+..
T Consensus 67 ~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~---~l~~----~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 67 VIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT---HLPA----LPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp EECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC---CCCC----CCTTCCEEECCSSCCSC
T ss_pred EecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC---CCCC----CCCCcCEEECCCCCCCc
Confidence 333333444443 45689999999998887776 7899999999887753 4554 56788889998888877
Q ss_pred ccccccCCChhHHHh----hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccc
Q 003996 569 LRSLTLGKLPKVTRF----CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHY 644 (780)
Q Consensus 569 L~~L~i~~L~~L~~L----~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 644 (780)
++. . +++|++| +....+|.. + ..++.|.-+...+ ..++ ..+++|+.|++++|.++.++..
T Consensus 136 lp~-~---l~~L~~L~Ls~N~l~~l~~~-~---~~L~~L~L~~N~l------~~l~--~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 136 LPV-L---PPGLQELSVSDNQLASLPAL-P---SELCKLWAYNNQL------TSLP--MLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp CCC-C---CTTCCEEECCSSCCSCCCCC-C---TTCCEEECCSSCC------SCCC--CCCTTCCEEECCSSCCSCCCCC
T ss_pred CCC-C---CCCCCEEECcCCcCCCcCCc-c---CCCCEEECCCCCC------CCCc--ccCCCCcEEECCCCCCCCCCCc
Confidence 664 1 3555555 111111220 0 0011110000000 0000 2235555555555554432211
Q ss_pred --------------cCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCccccccccc
Q 003996 645 --------------NQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYF 710 (780)
Q Consensus 645 --------------~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 710 (780)
..+| ..+++|+.|+|++|. ++.+| ..+++|+.|+++++ .++.++.
T Consensus 200 ~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~----------- 258 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLP---ALPSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGN-RLTSLPM----------- 258 (622)
T ss_dssp CTTCCEEECCSSCCSSCC---CCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSS-CCSCCCC-----------
T ss_pred cchhhEEECcCCcccccC---CCCCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCC-CCCcCCc-----------
Confidence 0111 112567777777764 66553 34567777777754 3444432
Q ss_pred ccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 711 VFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 711 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+++|++|+|++| +++.+|. ....+|+|+.|++++|+
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 4677888888886 5667743 34667888888888877
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=8.9e-10 Score=114.10 Aligned_cols=171 Identities=19% Similarity=0.185 Sum_probs=130.1
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
+..++.+.+..+.+..++. ...+++|+.|.+.++... .++.. ..+++|++|+|++|.+..++. .+.++++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~--~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~ 103 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVD--GTLPVLGTLDLSHNQLQSLPL-LGQTLPALT 103 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---EEECC--SCCTTCCEEECCSSCCSSCCC-CTTTCTTCC
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC---cccCC--CCCCcCCEEECCCCcCCcCch-hhccCCCCC
Confidence 4688999999998876543 357899999999988763 45542 789999999999999998886 678888888
Q ss_pred Hh-h--hcc-cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCc
Q 003996 582 RF-C--REV-KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 582 ~L-~--~~l-~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L 657 (780)
+| . +.+ .+|. ..+..+++|++|++++|.++.++. ..+..+++|
T Consensus 104 ~L~l~~N~l~~l~~----------------------------~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L 150 (290)
T 1p9a_G 104 VLDVSFNRLTSLPL----------------------------GALRGLGELQELYLKGNELKTLPP-----GLLTPTPKL 150 (290)
T ss_dssp EEECCSSCCCCCCS----------------------------STTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTC
T ss_pred EEECCCCcCcccCH----------------------------HHHcCCCCCCEEECCCCCCCccCh-----hhcccccCC
Confidence 87 1 111 1121 246678999999999998875433 246778999
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
+.|+|+++. ++.+|. ..+..+++|+.|+++++ .++.++. .+..+++|+.|.|.++|
T Consensus 151 ~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip~--------~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANNN-LTELPA-GLLNGLENLDTLLLQEN-SLYTIPK--------GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSC-CSCCCT-TTTTTCTTCCEEECCSS-CCCCCCT--------TTTTTCCCSEEECCSCC
T ss_pred CEEECCCCc-CCccCH-HHhcCcCCCCEEECCCC-cCCccCh--------hhcccccCCeEEeCCCC
Confidence 999999996 888752 34678999999999864 4666654 44567789999999876
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.98 E-value=3.9e-10 Score=128.35 Aligned_cols=202 Identities=18% Similarity=0.190 Sum_probs=141.5
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
+..++++.+.++.+..++. ...+++|++|.+.++... .+++..|.++++|++|||++|.+..++.-.+++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 4689999999998876643 257899999999988763 56666789999999999999998887653478888888
Q ss_pred Hh-h--hcccCCCCCCCccCCHHHHhccccccccccccccccccccccccccccccccc-ccccccccCCCCccccccCc
Q 003996 582 RF-C--REVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAIN-ADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 582 ~L-~--~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~lP~~~~~l~~L 657 (780)
+| . +.+.. ...+..+..+++|++|++++|. +..++ |..+..+++|
T Consensus 102 ~L~Ls~n~l~~--------------------------~~~~~~~~~l~~L~~L~L~~n~~~~~~~-----~~~~~~l~~L 150 (549)
T 2z81_A 102 YLNLMGNPYQT--------------------------LGVTSLFPNLTNLQTLRIGNVETFSEIR-----RIDFAGLTSL 150 (549)
T ss_dssp EEECTTCCCSS--------------------------SCSSCSCTTCTTCCEEEEEESSSCCEEC-----TTTTTTCCEE
T ss_pred EEECCCCcccc--------------------------cchhhhhhccCCccEEECCCCccccccC-----Hhhhhccccc
Confidence 88 1 11110 0011346778899999999876 44332 2347788999
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccC--CCCCc
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLY--PGMHT 735 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~--~~~~~ 735 (780)
++|++++|. ++... ...++.+++|+.|.++.+. +..++. .....+++|++|+++++. +..++ .....
T Consensus 151 ~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-~~~~~~-------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 219 (549)
T 2z81_A 151 NELEIKALS-LRNYQ-SQSLKSIRDIHHLTLHLSE-SAFLLE-------IFADILSSVRYLELRDTN-LARFQFSPLPVD 219 (549)
T ss_dssp EEEEEEETT-CCEEC-TTTTTTCSEEEEEEEECSB-STTHHH-------HHHHSTTTBSEEEEESCB-CTTCCCCCCSSC
T ss_pred CeeeccCCc-ccccC-hhhhhccccCceEecccCc-ccccch-------hhHhhcccccEEEccCCc-cccccccccchh
Confidence 999999987 55431 2567888999999998654 333332 122458999999999874 45431 11112
Q ss_pred cCCcccceeecccCC
Q 003996 736 SEWPALKNLVACNCD 750 (780)
Q Consensus 736 ~~~p~L~~L~i~~C~ 750 (780)
..+++|+.|.+.+|.
T Consensus 220 ~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 220 EVSSPMKKLAFRGSV 234 (549)
T ss_dssp CCCCCCCEEEEESCE
T ss_pred hhhhcccceeccccc
Confidence 357889999998875
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=2.3e-09 Score=106.79 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=101.3
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
..+...++.+..+|... .++|+.|.+.++... .+++..|.++++|++|+|++|.+..++.
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~N~l~~i~~---------------- 81 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQIT---KLEPGVFDSLINLKELYLGSNQLGALPV---------------- 81 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCccC---ccCHHHhhCccCCcEEECCCCCCCCcCh----------------
Confidence 34555566666666433 488999999888764 5555667889999999999988866543
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
..+..+++|++|+|++|.++.+.. ..+..+++|+.|+|+++.
T Consensus 82 --------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~~l~~L~~L~Ls~N~- 123 (229)
T 3e6j_A 82 --------------------------------GVFDSLTQLTVLDLGTNQLTVLPS-----AVFDRLVHLKELFMCCNK- 123 (229)
T ss_dssp --------------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC-
T ss_pred --------------------------------hhcccCCCcCEEECCCCcCCccCh-----hHhCcchhhCeEeccCCc-
Confidence 123456777788888777764322 235667788888888775
Q ss_pred CccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 668 LKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 668 l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
++.+| ..+..+++|+.|+++++ .++.++. ..+..+++|+.|+|.+++
T Consensus 124 l~~lp--~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 124 LTELP--RGIERLTHLTHLALDQN-QLKSIPH-------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSCC--TTGGGCTTCSEEECCSS-CCCCCCT-------TTTTTCTTCCEEECTTSC
T ss_pred ccccC--cccccCCCCCEEECCCC-cCCccCH-------HHHhCCCCCCEEEeeCCC
Confidence 66765 45677788888888754 4554443 134567788888887765
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.96 E-value=9.4e-10 Score=125.43 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=137.3
Q ss_pred eecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-hhcccCC
Q 003996 512 LLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-CREVKTP 590 (780)
Q Consensus 512 l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-~~~l~~P 590 (780)
+..+.+..+.....+++|+.|.+.++... .++. |..+++|+.|+|++|.+..++. +++|++|++| .....+
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~i~---~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l- 99 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSDIK---SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI- 99 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCCCC---CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-
T ss_pred ccCCCcccccchhcCCCCCEEECcCCCCC---CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-
Confidence 33333333333346789999999887753 4553 7899999999999999988775 7788888877 111111
Q ss_pred CCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCcc
Q 003996 591 STSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKY 670 (780)
Q Consensus 591 ~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~ 670 (780)
..++.+..+++|+.|+|++|.+..+ | .+..+++|+.|+|++|. +..
T Consensus 100 --------------------------~~l~~l~~l~~L~~L~Ls~N~l~~l------~-~l~~l~~L~~L~Ls~N~-l~~ 145 (605)
T 1m9s_A 100 --------------------------KDLSSLKDLKKLKSLSLEHNGISDI------N-GLVHLPQLESLYLGNNK-ITD 145 (605)
T ss_dssp --------------------------CCCTTSTTCTTCCEEECTTSCCCCC------G-GGGGCTTCSEEECCSSC-CCC
T ss_pred --------------------------CCChhhccCCCCCEEEecCCCCCCC------c-cccCCCccCEEECCCCc-cCC
Confidence 0113567889999999999988754 2 27788999999999996 776
Q ss_pred ccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 671 IFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 671 l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
+ +.+..|++|+.|+|++|. +..++ .+..+++|+.|+|++| .+..++ ....+++|+.|.+++|+
T Consensus 146 l---~~l~~l~~L~~L~Ls~N~-l~~~~---------~l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 I---TVLSRLTKLDTLSLEDNQ-ISDIV---------PLAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp C---GGGGSCTTCSEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEECCSEE
T ss_pred c---hhhcccCCCCEEECcCCc-CCCch---------hhccCCCCCEEECcCC-CCCCCh---HHccCCCCCEEEccCCc
Confidence 6 578899999999999764 44443 2567999999999997 466663 24678999999999987
Q ss_pred CCCCcCC
Q 003996 751 KITLSQN 757 (780)
Q Consensus 751 ~L~~~~~ 757 (780)
+...|.
T Consensus 209 -l~~~p~ 214 (605)
T 1m9s_A 209 -CLNKPI 214 (605)
T ss_dssp -EECCCC
T ss_pred -CcCCcc
Confidence 444443
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=2e-09 Score=128.86 Aligned_cols=198 Identities=12% Similarity=0.068 Sum_probs=127.5
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCc-CcccccccCCChhHHHh-hh
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEF-GQLRSLTLGKLPKVTRF-CR 585 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~-~~L~~L~i~~L~~L~~L-~~ 585 (780)
+.+..+.++...+|. -.+++++|.+.++... .+++..|.++++|++|||++|.. ..++.-.+++|++|++| ..
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 345555667777876 5689999999998764 55555689999999999999954 34533258899999988 11
Q ss_pred cccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccC
Q 003996 586 EVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGC 665 (780)
Q Consensus 586 ~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c 665 (780)
...+ . ...+..+..+++|++|+|++|.+..... -+.+++.+++|++|+|++|
T Consensus 82 ~N~l---------------------~----~~~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 82 SSKI---------------------Y----FLHPDAFQGLFHLFELRLYFCGLSDAVL---KDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp TCCC---------------------C----EECTTSSCSCSSCCCEECTTCCCSSCCS---TTCCCSSCSSCCEEEEESC
T ss_pred CCcC---------------------c----ccCHhHccCCcccCEeeCcCCCCCcccc---cCccccccCCCCEEECCCC
Confidence 1111 0 0012356778899999999888764111 1124778899999999988
Q ss_pred ccCccccchhhHhhccCCcEEEEecCchhHHhhccCccccccccccc--CcccEEeccCCCCccccCCCCCccCCc----
Q 003996 666 DKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVF--PRVTTLKLDGLPELRCLYPGMHTSEWP---- 739 (780)
Q Consensus 666 ~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~f--p~L~~L~l~~~~~L~~~~~~~~~~~~p---- 739 (780)
. +..+++.+.++.+++|++|+++++. +..+.. ..+..+ ++|+.|.+.++.--...+. ..+.++
T Consensus 134 ~-l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~-------~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~ 202 (844)
T 3j0a_A 134 Q-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE-------HELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCMNPFR 202 (844)
T ss_dssp C-CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS-------GGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSSCTTT
T ss_pred c-ccccccchhHhhCCCCCEEECCCCc-CCeeCH-------HHcccccCCccceEECCCCcccccccc--chhhcCCccc
Confidence 6 5555433567889999999998754 322211 122333 6777787777643332321 112223
Q ss_pred --ccceeecccC
Q 003996 740 --ALKNLVACNC 749 (780)
Q Consensus 740 --~L~~L~i~~C 749 (780)
+|+.|++++|
T Consensus 203 ~~~L~~L~Ls~n 214 (844)
T 3j0a_A 203 NMVLEILDVSGN 214 (844)
T ss_dssp TCCBSEEBCSSC
T ss_pred cCceeEEecCCC
Confidence 3777777776
No 97
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=3.1e-09 Score=111.91 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=116.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
|.....++||+..++.+.+++..+..+.+.|+|++|+||||+|+.+++...........++++.+.......+ ++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3345678999999999999998766556999999999999999999988643211112444444443332222 222221
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChHH-Hh-hcCCCceEe
Q 003996 231 LGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDINV-LL-SMGSKDNFL 306 (780)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~v-~~-~~~~~~~~~ 306 (780)
+.... ..+..+++.++|+||++... .++.+...+.....++.+|+||+.... .. .......+.
T Consensus 96 ~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 96 FAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 11000 00002357999999997642 233232222223356788888876432 11 122334899
Q ss_pred cCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHH-HHHHHHH
Q 003996 307 IGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIA-LTTVARA 356 (780)
Q Consensus 307 l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~~~ 356 (780)
+.+++.++..+++...+...... --.+....|++.++|.|.. +..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999998876421111 1135678899999999954 4444433
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.94 E-value=4.3e-09 Score=103.14 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=105.1
Q ss_pred EEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhccc
Q 003996 509 AISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVK 588 (780)
Q Consensus 509 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~ 588 (780)
.+....+.+..+|.. -.++++.|.+.++.. ..++..+|.++++|++|+|++|.+..++.
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------- 69 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSL---KSLPNGVFDELTSLTQLYLGGNKLQSLPN----------------- 69 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCcc---CcCChhhhcccccCcEEECCCCccCccCh-----------------
Confidence 344444555555432 246788888887765 35666677888888888888887765443
Q ss_pred CCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccC
Q 003996 589 TPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKL 668 (780)
Q Consensus 589 ~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l 668 (780)
..+..+++|++|++++|.++.+. |..+..+++|+.|+++++. +
T Consensus 70 -------------------------------~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~N~-l 112 (208)
T 2o6s_A 70 -------------------------------GVFNKLTSLTYLNLSTNQLQSLP-----NGVFDKLTQLKELALNTNQ-L 112 (208)
T ss_dssp -------------------------------TTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSC-C
T ss_pred -------------------------------hhcCCCCCcCEEECCCCcCCccC-----HhHhcCccCCCEEEcCCCc-C
Confidence 12345667777777777666432 2235667777777777775 6
Q ss_pred ccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeeccc
Q 003996 669 KYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACN 748 (780)
Q Consensus 669 ~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~ 748 (780)
+.+++ ..+..+++|+.|+++++. ++.++. ..+..+++|++|++.+++-. +.+|.|+.|.+..
T Consensus 113 ~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 113 QSLPD-GVFDKLTQLKDLRLYQNQ-LKSVPD-------GVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWI 174 (208)
T ss_dssp CCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHH
T ss_pred cccCH-hHhccCCcCCEEECCCCc-cceeCH-------HHhccCCCccEEEecCCCee---------cCCCCHHHHHHHH
Confidence 65531 235667777777777543 444432 12455777777777776311 3456667766665
Q ss_pred CCCCCCcC
Q 003996 749 CDKITLSQ 756 (780)
Q Consensus 749 C~~L~~~~ 756 (780)
+.---.+|
T Consensus 175 n~~~g~ip 182 (208)
T 2o6s_A 175 NKHSGVVR 182 (208)
T ss_dssp HHCTTTBB
T ss_pred HhCCceee
Confidence 54333444
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.94 E-value=2.3e-09 Score=106.12 Aligned_cols=150 Identities=20% Similarity=0.257 Sum_probs=95.6
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+.+...++.+..+|... .++++.|.+.++.. ..+++..|..+++|++|+|++|.+..+..
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---------------- 73 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQISELAP---------------- 73 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSCCCEECT----------------
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCcCCCcCH----------------
Confidence 34555556666666433 36788888887765 35666667888888888888887765422
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
..+..+++|++|+|++|.++.++.+ .+..+++|+.|+|+++.
T Consensus 74 --------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~-----~f~~l~~L~~L~L~~N~- 115 (220)
T 2v9t_B 74 --------------------------------DAFQGLRSLNSLVLYGNKITELPKS-----LFEGLFSLQLLLLNANK- 115 (220)
T ss_dssp --------------------------------TTTTTCSSCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSC-
T ss_pred --------------------------------HHhhCCcCCCEEECCCCcCCccCHh-----HccCCCCCCEEECCCCC-
Confidence 1345566777777777777643322 24566777777777775
Q ss_pred CccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 668 LKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 668 l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
++.++ ...+..+++|+.|+++++. ++.++. ..+..+++|++|+|.+++
T Consensus 116 l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 116 INCLR-VDAFQDLHNLNLLSLYDNK-LQTIAK-------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred CCEeC-HHHcCCCCCCCEEECCCCc-CCEECH-------HHHhCCCCCCEEEeCCCC
Confidence 55553 2356677777777777543 444432 134556777777777764
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.93 E-value=3.4e-09 Score=120.88 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=63.6
Q ss_pred eccccccCCchhhhccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc
Q 003996 491 RNEAVWEWPDEDALKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 491 ~~~~~~~~~~~~~~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~ 568 (780)
.+..+...|. ..+..++++.+..+.+..++. ...+++|++|.+.++.. ..++++.|.++++|++|||++|.+..
T Consensus 39 s~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~ 114 (562)
T 3a79_B 39 SNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI---RSLDFHVFLFNQDLEYLDVSHNRLQN 114 (562)
T ss_dssp TTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC---CEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred CCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC---CcCCHHHhCCCCCCCEEECCCCcCCc
Confidence 3333444443 234688999999998877763 35789999999998876 35666678999999999999998887
Q ss_pred ccccccCCChhHHHh
Q 003996 569 LRSLTLGKLPKVTRF 583 (780)
Q Consensus 569 L~~L~i~~L~~L~~L 583 (780)
++.. .|++|++|
T Consensus 115 lp~~---~l~~L~~L 126 (562)
T 3a79_B 115 ISCC---PMASLRHL 126 (562)
T ss_dssp ECSC---CCTTCSEE
T ss_pred cCcc---ccccCCEE
Confidence 7753 67777777
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=3.7e-09 Score=119.37 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=58.3
Q ss_pred ccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 505 KKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
..++++.+.++.+..++. ...+++|++|.+.++... .+++..|.++++|++|||++|.+..++.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc---ccCCccE
Confidence 688999999998877653 257899999999888763 56556689999999999999998887763 7778887
Q ss_pred h
Q 003996 583 F 583 (780)
Q Consensus 583 L 583 (780)
|
T Consensus 95 L 95 (520)
T 2z7x_B 95 L 95 (520)
T ss_dssp E
T ss_pred E
Confidence 7
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=3.6e-09 Score=99.76 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=86.8
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCcc-ccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKY-IFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~-l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
+..+++|++|++++|.++.+ ..++.+++|+.|++++|. +.. +| ..+..+++|+.|++++| .++.++..
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~ 113 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENR-IFGGLD--MLAEKLPNLTHLNLSGN-KLKDISTL 113 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCC-CCSCCC--HHHHHCTTCCEEECBSS-SCCSSGGG
T ss_pred HHhCCCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCc-CchHHH--HHHhhCCCCCEEeccCC-ccCcchhH
Confidence 45678999999999888765 237788999999999997 665 44 45667999999999976 45554321
Q ss_pred CcccccccccccCcccEEeccCCCCccccCC--CCCccCCcccceeecccCCCCCCcCCC
Q 003996 701 DRTDQVTAYFVFPRVTTLKLDGLPELRCLYP--GMHTSEWPALKNLVACNCDKITLSQND 758 (780)
Q Consensus 701 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~--~~~~~~~p~L~~L~i~~C~~L~~~~~~ 758 (780)
..+..+|+|++|++++++ +..++. ......+|+|+.|++.+|+ ++.+|.+
T Consensus 114 ------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 114 ------EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp ------GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred ------HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 145678999999999974 666642 0133578999999999997 5555543
No 103
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.92 E-value=2.5e-09 Score=121.72 Aligned_cols=203 Identities=14% Similarity=0.142 Sum_probs=144.8
Q ss_pred hccceEEEeecCcccccCC--CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccccc-ccCCChhH
Q 003996 504 LKKCYAISLLNSSIHEVSE--EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSL-TLGKLPKV 580 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L-~i~~L~~L 580 (780)
...++++.+.++.+..++. ...+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..+..- .+++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL---SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC---CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCcc---CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 4679999999998877653 24789999999998876 467777789999999999999998865321 47888888
Q ss_pred HHh-hhc---ccC-CCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcccccc
Q 003996 581 TRF-CRE---VKT-PSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQ 655 (780)
Q Consensus 581 ~~L-~~~---l~~-P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~ 655 (780)
++| ... ... |. ..+..+++|++|+++++.+.. ..|.+++.++
T Consensus 126 ~~L~L~~n~~~~~~~~----------------------------~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~ 172 (549)
T 2z81_A 126 QTLRIGNVETFSEIRR----------------------------IDFAGLTSLNELEIKALSLRN-----YQSQSLKSIR 172 (549)
T ss_dssp CEEEEEESSSCCEECT----------------------------TTTTTCCEEEEEEEEETTCCE-----ECTTTTTTCS
T ss_pred cEEECCCCccccccCH----------------------------hhhhcccccCeeeccCCcccc-----cChhhhhccc
Confidence 888 111 111 21 246778999999999988874 3566788899
Q ss_pred CccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCC---C
Q 003996 656 SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYP---G 732 (780)
Q Consensus 656 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~---~ 732 (780)
+|+.|+++++. ...++ ...+..+++|+.|+++++. +..++.... .....+++|++|++.++. +..... .
T Consensus 173 ~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 244 (549)
T 2z81_A 173 DIHHLTLHLSE-SAFLL-EIFADILSSVRYLELRDTN-LARFQFSPL----PVDEVSSPMKKLAFRGSV-LTDESFNELL 244 (549)
T ss_dssp EEEEEEEECSB-STTHH-HHHHHSTTTBSEEEEESCB-CTTCCCCCC----SSCCCCCCCCEEEEESCE-EEHHHHHHHH
T ss_pred cCceEecccCc-ccccc-hhhHhhcccccEEEccCCc-ccccccccc----chhhhhhcccceeccccc-cchhHHHHHH
Confidence 99999999986 55553 1234579999999999765 444321000 122457899999998873 322100 1
Q ss_pred CCccCCcccceeecccCC
Q 003996 733 MHTSEWPALKNLVACNCD 750 (780)
Q Consensus 733 ~~~~~~p~L~~L~i~~C~ 750 (780)
.....+++|+.|.+.+|.
T Consensus 245 ~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCT 262 (549)
T ss_dssp GGGGGCTTCCEEEEESCE
T ss_pred HHhhhhcccccccccccc
Confidence 112457899999999987
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.89 E-value=6.6e-09 Score=107.61 Aligned_cols=149 Identities=17% Similarity=0.260 Sum_probs=115.9
Q ss_pred CchhhhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCCh
Q 003996 499 PDEDALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLP 578 (780)
Q Consensus 499 ~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~ 578 (780)
+.......++++.+.++.+..++....+++|+.|.+.++... .++. +..+++|++|+|++|.+..++ .+++++
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~---~~~~--l~~l~~L~~L~L~~n~i~~~~--~l~~l~ 134 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK---DLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLP 134 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---CGGG--GTTCTTCCEEECTTSCCCCCG--GGGGCT
T ss_pred hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC---CChh--hccCCCCCEEECCCCcCCCCh--hhcCCC
Confidence 344445789999999999888776668999999999988763 3443 799999999999999998875 467778
Q ss_pred hHHHh-hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCc
Q 003996 579 KVTRF-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSL 657 (780)
Q Consensus 579 ~L~~L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L 657 (780)
+|++| .....+ .....+..+++|+.|++++|.+..+. | +..+++|
T Consensus 135 ~L~~L~l~~n~l---------------------------~~~~~l~~l~~L~~L~L~~N~l~~~~-----~--l~~l~~L 180 (291)
T 1h6t_A 135 QLESLYLGNNKI---------------------------TDITVLSRLTKLDTLSLEDNQISDIV-----P--LAGLTKL 180 (291)
T ss_dssp TCCEEECCSSCC---------------------------CCCGGGGGCTTCSEEECCSSCCCCCG-----G--GTTCTTC
T ss_pred CCCEEEccCCcC---------------------------CcchhhccCCCCCEEEccCCccccch-----h--hcCCCcc
Confidence 88777 111111 01135678899999999999887542 2 6788999
Q ss_pred cEEeeccCccCccccchhhHhhccCCcEEEEecCc
Q 003996 658 TRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 658 ~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
+.|++++|. ++.+ +.+..+++|+.|+++++.
T Consensus 181 ~~L~L~~N~-i~~l---~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 181 QNLYLSKNH-ISDL---RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CEEECCSSC-CCBC---GGGTTCTTCSEEEEEEEE
T ss_pred CEEECCCCc-CCCC---hhhccCCCCCEEECcCCc
Confidence 999999996 8777 457899999999999764
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.89 E-value=3e-10 Score=120.49 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=107.4
Q ss_pred CCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc--ccccccCCChhHHHh-hhcccCCCCCCCccCCHHHH
Q 003996 527 PQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ--LRSLTLGKLPKVTRF-CREVKTPSTSPNRQESQEEL 603 (780)
Q Consensus 527 ~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~--L~~L~i~~L~~L~~L-~~~l~~P~~~l~~~~~l~~L 603 (780)
++++.|.+.++... . .+.. +.++++|++|+|++|.+.. ++. .++++++|++| .....+.. ..+..
T Consensus 70 ~~l~~L~l~~n~l~--~-~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~------~~~~~- 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMD--Q-PLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSD------PIVNT- 137 (336)
T ss_dssp TTCSEEECTTCEEC--S-CCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCH------HHHHH-
T ss_pred ccceEEEcCCcccc--c-cchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCH------HHHHH-
Confidence 78999999877653 2 3333 3579999999999998764 443 36677777777 11111100 00000
Q ss_pred hccccccc---cccc----c-cccccccccccccccccccc-cccccccccCCCCcccccc-CccEEeeccCc-cCc--c
Q 003996 604 TASSDEIS---SDTS----T-LLFNEKVVLPNLEALELNAI-NADEIWHYNQLPGMVPCFQ-SLTRLIVWGCD-KLK--Y 670 (780)
Q Consensus 604 ~~~~~~~~---~~~~----~-~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~lP~~~~~l~-~L~~L~L~~c~-~l~--~ 670 (780)
+..++.++ .... . .....+..+++|++|+++++ +++.. .+|..+..++ +|++|+|++|. .+. .
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----HVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH----HHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH----HHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 01111111 1100 0 11223455677777777776 55431 1233355666 77777777774 232 2
Q ss_pred ccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccC
Q 003996 671 IFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 749 (780)
Q Consensus 671 l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 749 (780)
++ ..+..+++|+.|++++|..++.... ..+..+|+|++|++++|..+..-. ......+|+|+.|++++|
T Consensus 214 l~--~~~~~~~~L~~L~l~~~~~l~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LS--TLVRRCPNLVHLDLSDSVMLKNDCF-------QEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HH--HHHHHCTTCSEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS
T ss_pred HH--HHHhhCCCCCEEeCCCCCcCCHHHH-------HHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc
Confidence 22 3456677777777777664332111 245567788888888776332210 012345778888888877
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.89 E-value=4.3e-09 Score=104.09 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=86.2
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+.+.+.++.+..+|... .+.++.|.+.++... ...+..+|.++++|++|+|++|.+..+..-
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEG--------------- 75 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTT---------------
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHH---------------
Confidence 46677777776666432 456778888877754 222455678888888888888887665431
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
.+..+++|++|+|++|.++.+. |..+..+++|+.|+|+++.
T Consensus 76 ---------------------------------~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~- 116 (220)
T 2v70_A 76 ---------------------------------AFEGASGVNEILLTSNRLENVQ-----HKMFKGLESLKTLMLRSNR- 116 (220)
T ss_dssp ---------------------------------TTTTCTTCCEEECCSSCCCCCC-----GGGGTTCSSCCEEECTTSC-
T ss_pred ---------------------------------HhCCCCCCCEEECCCCccCccC-----HhHhcCCcCCCEEECCCCc-
Confidence 2344555666666665554332 2234555666666666654
Q ss_pred CccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 668 LKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 668 l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
++.+++ ..+..+++|+.|+++++ .++.++. ..+..+++|++|+|.+++
T Consensus 117 l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 117 ITCVGN-DSFIGLSSVRLLSLYDN-QITTVAP-------GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCBCT-TSSTTCTTCSEEECTTS-CCCCBCT-------TTTTTCTTCCEEECCSCC
T ss_pred CCeECH-hHcCCCccCCEEECCCC-cCCEECH-------HHhcCCCCCCEEEecCcC
Confidence 444421 34455666666666543 2333321 134455666666666553
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.89 E-value=1.4e-09 Score=110.81 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=54.0
Q ss_pred ccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccc
Q 003996 626 PNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQ 705 (780)
Q Consensus 626 ~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 705 (780)
++|+.|++++|.++.+ | .++.+++|+.|++++|. ++.+ +.+..+++|+.|+++++. +..+
T Consensus 106 ~~L~~L~L~~N~l~~~------~-~l~~l~~L~~L~Ls~N~-i~~~---~~l~~l~~L~~L~L~~N~-i~~~-------- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT------D-SLIHLKNLEILSIRNNK-LKSI---VMLGFLSKLEVLDLHGNE-ITNT-------- 165 (263)
T ss_dssp SSCCEEECCSSCCSBS------G-GGTTCTTCCEEECTTSC-CCBC---GGGGGCTTCCEEECTTSC-CCBC--------
T ss_pred CcccEEEccCCccCCC------h-hhcCcccccEEECCCCc-CCCC---hHHccCCCCCEEECCCCc-Ccch--------
Confidence 6788888888777653 2 26677888888888875 6666 356778888888887653 3333
Q ss_pred cccccccCcccEEeccCCC
Q 003996 706 VTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 706 ~~~~~~fp~L~~L~l~~~~ 724 (780)
..+..+++|+.|++++++
T Consensus 166 -~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCc
Confidence 145667888888887764
No 108
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.88 E-value=7.3e-09 Score=116.93 Aligned_cols=194 Identities=11% Similarity=0.128 Sum_probs=115.8
Q ss_pred ccceEEEeecCcccccCCC--C---CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc-ccccccCCCh
Q 003996 505 KKCYAISLLNSSIHEVSEE--F---ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ-LRSLTLGKLP 578 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~--~---~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~-L~~L~i~~L~ 578 (780)
..++.+.+..+.+ .+|.. . ...+|+.|.+.++... .++ ++..++.|++|+|++|.+.. ++. .+++++
T Consensus 276 ~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~---~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~ 348 (520)
T 2z7x_B 276 KALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV---HML--CPSKISPFLHLDFSNNLLTDTVFE-NCGHLT 348 (520)
T ss_dssp CEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC---CCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCCCS
T ss_pred ceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc---ccc--chhhCCcccEEEeECCccChhhhh-hhccCC
Confidence 4556666666655 33311 0 1245777777766542 121 12567777777777777665 332 456666
Q ss_pred hHHHh-hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccc-cccccCCCCccccccC
Q 003996 579 KVTRF-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADE-IWHYNQLPGMVPCFQS 656 (780)
Q Consensus 579 ~L~~L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~lP~~~~~l~~ 656 (780)
+|++| ...-.+- ++ ...+..+..+++|++|++++|.+.. ++.+ .+..+++
T Consensus 349 ~L~~L~L~~N~l~------------------~l-----~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----~~~~l~~ 400 (520)
T 2z7x_B 349 ELETLILQMNQLK------------------EL-----SKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----DCSWTKS 400 (520)
T ss_dssp SCCEEECCSSCCC------------------BH-----HHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----SCCCCTT
T ss_pred CCCEEEccCCccC------------------cc-----ccchHHHhhCCCCCEEECCCCcCCcccccc-----hhccCcc
Confidence 66655 0000000 00 0011245678888888998888764 3321 2556788
Q ss_pred ccEEeeccCccCc-cccchhhHhhc-cCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCC
Q 003996 657 LTRLIVWGCDKLK-YIFSASTIQSL-EQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMH 734 (780)
Q Consensus 657 L~~L~L~~c~~l~-~l~~~~~l~~L-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~ 734 (780)
|+.|++++|. +. ..| ..+ ++|+.|++++|. ++.++. .+..+++|++|+++++ +++.++.. .
T Consensus 401 L~~L~Ls~N~-l~~~~~-----~~l~~~L~~L~Ls~N~-l~~ip~--------~~~~l~~L~~L~L~~N-~l~~l~~~-~ 463 (520)
T 2z7x_B 401 LLSLNMSSNI-LTDTIF-----RCLPPRIKVLDLHSNK-IKSIPK--------QVVKLEALQELNVASN-QLKSVPDG-I 463 (520)
T ss_dssp CCEEECCSSC-CCGGGG-----GSCCTTCCEEECCSSC-CCCCCG--------GGGGCTTCCEEECCSS-CCCCCCTT-T
T ss_pred CCEEECcCCC-CCcchh-----hhhcccCCEEECCCCc-ccccch--------hhhcCCCCCEEECCCC-cCCccCHH-H
Confidence 8999998886 43 222 123 688999988764 555553 3457888999999887 57777543 2
Q ss_pred ccCCcccceeecccCC
Q 003996 735 TSEWPALKNLVACNCD 750 (780)
Q Consensus 735 ~~~~p~L~~L~i~~C~ 750 (780)
...+++|+.|++.++|
T Consensus 464 ~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccCCcccEEECcCCC
Confidence 3567888888888776
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=3.8e-09 Score=103.51 Aligned_cols=153 Identities=17% Similarity=0.176 Sum_probs=115.9
Q ss_pred hccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 504 LKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
+..++++.+.++.+..++.. ..+++|++|.+.++.. ..++...|.++++|++|+|++|.+..++.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNLSTNQLQSLPN---------- 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCT----------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---CccChhhcCCCCCcCEEECCCCcCCccCH----------
Confidence 45899999999998877653 4789999999998876 46787888999999999999998876543
Q ss_pred HhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 582 RFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 582 ~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
..+..+++|++|++++|.+..+.. ..+..+++|+.|+
T Consensus 94 --------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 94 --------------------------------------GVFDKLTQLKELALNTNQLQSLPD-----GVFDKLTQLKDLR 130 (208)
T ss_dssp --------------------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEE
T ss_pred --------------------------------------hHhcCccCCCEEEcCCCcCcccCH-----hHhccCCcCCEEE
Confidence 124567889999999988875432 2467789999999
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcccc
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCL 729 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~ 729 (780)
|+++. ++.+++ ..+..+++|+.|+++++.- .+.+|+|+.|.++.+.--..+
T Consensus 131 l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~---------------~~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 131 LYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPW---------------DCTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CCSSC-CSCCCT-TTTTTCTTCCEEECCSCCB---------------CCCTTTTHHHHHHHHHCTTTB
T ss_pred CCCCc-cceeCH-HHhccCCCccEEEecCCCe---------------ecCCCCHHHHHHHHHhCCcee
Confidence 99986 777642 3467899999999987631 134677888877765433344
No 110
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=5.4e-09 Score=110.19 Aligned_cols=175 Identities=11% Similarity=0.067 Sum_probs=107.0
Q ss_pred CcccccchHHHHHHHHHHhhc-----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTD-----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
....++|++..++.+..++.. .....+.|+|++|+|||++|+.+++.... ..++++.+......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH--
Confidence 456789999998888887752 34467889999999999999999987642 234444443323222211
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhc--CCeEEEEEeCCCCccC--ccccCCC--------CCC----------CCCCcE
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKN--ENKILVILDNIWKHLD--LDTVGIP--------FGN----------DHEGCR 285 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~--~~~l~~~--------l~~----------~~~gs~ 285 (780)
.+.. .++.+|++|++..... ...+... +.. ...+..
T Consensus 83 ----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 ----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1111 2456888888865421 1111000 000 012345
Q ss_pred EEEEeCChHHH-hhc-CC-CceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 286 LLLTARDINVL-LSM-GS-KDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 286 IlvTTR~~~v~-~~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
+|.||...... ..+ .. ...+.+.+++.++..+++.+.+...... --.+....|++.++|.|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666643211 111 11 2478999999999999998876532211 123577889999999998887766655
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=6.8e-09 Score=111.14 Aligned_cols=128 Identities=17% Similarity=0.137 Sum_probs=68.0
Q ss_pred ccceEEEeecCcccccCCC--C-CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHH
Q 003996 505 KKCYAISLLNSSIHEVSEE--F-ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVT 581 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~--~-~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~ 581 (780)
..+++|.+.+|.+..++.. . .+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..++.-
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------- 106 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---NFISSEAFVPVPNLRYLDLSSNHLHTLDEF--------- 106 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCEECTT---------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC---CccChhhccCCCCCCEEECCCCcCCcCCHH---------
Confidence 3455566666655544432 1 455666666655544 244444455666666666666655544321
Q ss_pred HhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 582 RFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 582 ~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
.+..+++|+.|+|++|.+..+. |..+..+++|+.|+
T Consensus 107 ---------------------------------------~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 107 ---------------------------------------LFSDLQALEVLLLYNNHIVVVD-----RNAFEDMAQLQKLY 142 (361)
T ss_dssp ---------------------------------------TTTTCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEE
T ss_pred ---------------------------------------HhCCCcCCCEEECCCCcccEEC-----HHHhCCcccCCEEE
Confidence 2345566666666666665432 22355566666666
Q ss_pred eccCccCccccchhhH---hhccCCcEEEEec
Q 003996 662 VWGCDKLKYIFSASTI---QSLEQLQHLEIRL 690 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l---~~L~~L~~L~l~~ 690 (780)
|+++. +..+|. ..+ ..+++|+.|+|++
T Consensus 143 L~~N~-l~~l~~-~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 143 LSQNQ-ISRFPV-ELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSC-CCSCCG-GGTC----CTTCCEEECCS
T ss_pred CCCCc-CCeeCH-HHhcCcccCCcCCEEECCC
Confidence 66664 555541 112 4566666666664
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.81 E-value=1.4e-08 Score=103.29 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred hhccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 503 ALKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
....++++.+.++.+..++....+++|++|.+.++... .+++ |.++++|++|+|++|.+..++.+. . ++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~---~~~~--l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~ 110 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS---DLSP--LKDLTKLEELSVNRNRLKNLNGIP--S-ACLSR 110 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC---CCGG--GTTCSSCCEEECCSSCCSCCTTCC--C-SSCCE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC---CChh--hccCCCCCEEECCCCccCCcCccc--c-CcccE
Confidence 34567788888777776665456788888888777653 4554 677888888888888777765422 2 45554
Q ss_pred h-hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEe
Q 003996 583 F-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLI 661 (780)
Q Consensus 583 L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~ 661 (780)
| .....+ ..++.+..+++|+.|++++|.++.+. .++.+++|+.|+
T Consensus 111 L~L~~N~l---------------------------~~~~~l~~l~~L~~L~Ls~N~i~~~~-------~l~~l~~L~~L~ 156 (263)
T 1xeu_A 111 LFLDNNEL---------------------------RDTDSLIHLKNLEILSIRNNKLKSIV-------MLGFLSKLEVLD 156 (263)
T ss_dssp EECCSSCC---------------------------SBSGGGTTCTTCCEEECTTSCCCBCG-------GGGGCTTCCEEE
T ss_pred EEccCCcc---------------------------CCChhhcCcccccEEECCCCcCCCCh-------HHccCCCCCEEE
Confidence 4 000000 01124567788888888888776542 267778888888
Q ss_pred eccCccCccccchhhHhhccCCcEEEEecCc
Q 003996 662 VWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 662 L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
+++|. +..+ ..+..+++|+.|+++++.
T Consensus 157 L~~N~-i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 157 LHGNE-ITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTSC-CCBC---TTSTTCCCCCEEEEEEEE
T ss_pred CCCCc-Ccch---HHhccCCCCCEEeCCCCc
Confidence 88875 6655 456778888888887654
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.80 E-value=2.7e-08 Score=109.81 Aligned_cols=194 Identities=17% Similarity=0.087 Sum_probs=122.5
Q ss_pred hccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh
Q 003996 504 LKKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF 583 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L 583 (780)
+..++++.+.++.+..+|.. .++|++|.+.++... .++.. .++|++|+|++|.+..++ .++++++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~---~l~~~----~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK---ALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS---CCCSC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccC---cccCC----CCCCCEEECcCCCCCCCc--ccCCCCCCCEE
Confidence 35678888888777766542 477888888776543 33321 257888888888777777 47777777777
Q ss_pred ----hhcccCCCCCCCccCCHHHHhccccccccc-ccccccccccccccccccccccccccccccccCCCCccccccCcc
Q 003996 584 ----CREVKTPSTSPNRQESQEELTASSDEISSD-TSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLT 658 (780)
Q Consensus 584 ----~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~ 658 (780)
+....+|.. . .+++.| ... +.....+.+..+++|+.|++++|.++.++. . .++|+
T Consensus 159 ~l~~N~l~~lp~~-~---~~L~~L-------~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~------~---~~~L~ 218 (454)
T 1jl5_A 159 DVDNNSLKKLPDL-P---PSLEFI-------AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD------L---PLSLE 218 (454)
T ss_dssp ECCSSCCSCCCCC-C---TTCCEE-------ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC------C---CTTCC
T ss_pred ECCCCcCcccCCC-c---ccccEE-------ECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC------C---cCccc
Confidence 111122320 0 011111 100 011112356788899999999888765322 1 25899
Q ss_pred EEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCC
Q 003996 659 RLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW 738 (780)
Q Consensus 659 ~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 738 (780)
.|++++|. ++.+| .++.+++|+.|+++++. ++.++. .+++|++|+++++. +..++. .+
T Consensus 219 ~L~l~~n~-l~~lp---~~~~l~~L~~L~l~~N~-l~~l~~-----------~~~~L~~L~l~~N~-l~~l~~-----~~ 276 (454)
T 1jl5_A 219 SIVAGNNI-LEELP---ELQNLPFLTTIYADNNL-LKTLPD-----------LPPSLEALNVRDNY-LTDLPE-----LP 276 (454)
T ss_dssp EEECCSSC-CSSCC---CCTTCTTCCEEECCSSC-CSSCCS-----------CCTTCCEEECCSSC-CSCCCC-----CC
T ss_pred EEECcCCc-CCccc---ccCCCCCCCEEECCCCc-CCcccc-----------cccccCEEECCCCc-ccccCc-----cc
Confidence 99999995 77775 47789999999998754 444432 35789999998863 666632 24
Q ss_pred cccceeecccCC
Q 003996 739 PALKNLVACNCD 750 (780)
Q Consensus 739 p~L~~L~i~~C~ 750 (780)
++|+.|++++|.
T Consensus 277 ~~L~~L~ls~N~ 288 (454)
T 1jl5_A 277 QSLTFLDVSENI 288 (454)
T ss_dssp TTCCEEECCSSC
T ss_pred CcCCEEECcCCc
Confidence 778888887764
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.80 E-value=2e-08 Score=114.41 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=62.2
Q ss_pred ccccccccccccccccccccccccCCCC-ccccccCccEEeeccCccCccccchhhHhhc-cCCcEEEEecCchhHHhhc
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPG-MVPCFQSLTRLIVWGCDKLKYIFSASTIQSL-EQLQHLEIRLCKSLQEIIS 699 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~-~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L-~~L~~L~l~~c~~l~~l~~ 699 (780)
+..+++|+.|++++|.+.. .+|. .+..+++|+.|++++|. +... ....+ ++|+.|+++++ .++.++.
T Consensus 399 ~~~l~~L~~L~l~~N~l~~-----~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNS-----HAYDRTCAWAESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp TTTCTTCCEEECTTSCCBS-----CCSSCCCCCCTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCCCT
T ss_pred hcCCCCCCEEECCCCcCCC-----ccChhhhcCcccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCcccCh
Confidence 4556677777777766653 1221 24556777777777775 3321 11223 47777777754 4555543
Q ss_pred cCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 700 EDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 700 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+..+++|++|+++++ +++.++.. ....+++|+.|+++++|
T Consensus 468 --------~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 468 --------DVTHLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp --------TTTSSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred --------hhcCCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCC
Confidence 3346677777777765 45666433 13456777777776655
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=1.1e-08 Score=107.91 Aligned_cols=189 Identities=11% Similarity=0.094 Sum_probs=114.6
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKL 231 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 231 (780)
.....++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+.......+ .+.+.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 98 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVK-- 98 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHH--
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHH--
Confidence 345678999999999999998776666999999999999999999988643210012333433321111110 00000
Q ss_pred CCCCCchhHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChHHH-h-hcCCCceE
Q 003996 232 GLELSDEAEYRRASRLYER--LKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDINVL-L-SMGSKDNF 305 (780)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~-~~~~~~~~ 305 (780)
..... +..+++.++|+||++... .+..+...+.....++++|+||...... . .......+
T Consensus 99 --------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 99 --------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp --------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred --------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00000 111357899999997542 2232322222223467888888764321 1 11122378
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh
Q 003996 306 LIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARALR 358 (780)
Q Consensus 306 ~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 358 (780)
.+.+++.++...++...+...... --.+....|++.++|.|..+..+...+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999998876432211 1235678899999999987655544443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.78 E-value=7.5e-09 Score=110.83 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=122.6
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHh-cCCcceEEEecCCCcCcccccccCCChhHHHhhhc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFK-GMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCRE 586 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~-~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~ 586 (780)
+.+...++.+..+|... .+.++.|.+.++.. ..++...|. ++++|++|+|++|.+..++.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l---~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~--------------- 81 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL---SRLRAEWTPTRLTNLHSLLLSHNHLNFISS--------------- 81 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC---CEECTTSSSSCCTTCCEEECCSSCCCEECT---------------
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC---CccChhhhhhcccccCEEECCCCcCCccCh---------------
Confidence 45666667776666432 45688888888776 356666666 88889999998888765542
Q ss_pred ccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCc
Q 003996 587 VKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCD 666 (780)
Q Consensus 587 l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~ 666 (780)
..+..+++|++|+|++|.++.+.. ..+..+++|+.|+|+++.
T Consensus 82 ---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 82 ---------------------------------EAFVPVPNLRYLDLSSNHLHTLDE-----FLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSC
T ss_pred ---------------------------------hhccCCCCCCEEECCCCcCCcCCH-----HHhCCCcCCCEEECCCCc
Confidence 135678899999999999886533 247788999999999997
Q ss_pred cCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcc--ccee
Q 003996 667 KLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPA--LKNL 744 (780)
Q Consensus 667 ~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~--L~~L 744 (780)
+..++ ...+..+++|+.|+|+++ .+..++...- .....+++|+.|+|+++ +++.++.. ....+|. |+.|
T Consensus 124 -i~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~~~l~~l 194 (361)
T 2xot_A 124 -IVVVD-RNAFEDMAQLQKLYLSQN-QISRFPVELI----KDGNKLPKLMLLDLSSN-KLKKLPLT-DLQKLPAWVKNGL 194 (361)
T ss_dssp -CCEEC-TTTTTTCTTCCEEECCSS-CCCSCCGGGT----C----CTTCCEEECCSS-CCCCCCHH-HHHHSCHHHHTTE
T ss_pred -ccEEC-HHHhCCcccCCEEECCCC-cCCeeCHHHh----cCcccCCcCCEEECCCC-CCCccCHH-HhhhccHhhcceE
Confidence 77663 246789999999999965 4665553100 01146899999999986 56766421 1234555 3777
Q ss_pred ecccCC
Q 003996 745 VACNCD 750 (780)
Q Consensus 745 ~i~~C~ 750 (780)
++.++|
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 776644
No 117
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.78 E-value=1.2e-08 Score=118.00 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=52.7
Q ss_pred hhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhH
Q 003996 503 ALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L 580 (780)
.+..+++|.++.|.+..++.. ..+++|++|.+.++.. ..++++.|.++++|++|+|++|.+..++.-.+++|++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 345677888887777766542 4677788888877665 35666677778888888888877776654234555555
Q ss_pred HHh
Q 003996 581 TRF 583 (780)
Q Consensus 581 ~~L 583 (780)
++|
T Consensus 127 ~~L 129 (635)
T 4g8a_A 127 QKL 129 (635)
T ss_dssp CEE
T ss_pred CEE
Confidence 555
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.77 E-value=6.5e-09 Score=97.99 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHhc
Q 003996 526 CPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELTA 605 (780)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~ 605 (780)
.++|+.|.+.++... ...+|.. +.++++|++|+|++|.+..+.
T Consensus 23 ~~~L~~L~l~~n~l~-~~~i~~~-~~~l~~L~~L~l~~n~l~~~~----------------------------------- 65 (168)
T 2ell_A 23 PAAVRELVLDNCKSN-DGKIEGL-TAEFVNLEFLSLINVGLISVS----------------------------------- 65 (168)
T ss_dssp TTSCSEEECCSCBCB-TTBCSSC-CGGGGGCCEEEEESSCCCCCS-----------------------------------
T ss_pred cccCCEEECCCCCCC-hhhHHHH-HHhCCCCCEEeCcCCCCCChh-----------------------------------
Confidence 467888888776542 0145543 678888888888888776541
Q ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcE
Q 003996 606 SSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQH 685 (780)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~ 685 (780)
.+..+++|++|++++|.+... +|..+..+++|+.|+|++|. ++.++.+..+..+++|+.
T Consensus 66 ---------------~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 66 ---------------NLPKLPKLKKLELSENRIFGG-----LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKS 124 (168)
T ss_dssp ---------------SCCCCSSCCEEEEESCCCCSC-----CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCE
T ss_pred ---------------hhccCCCCCEEECcCCcCchH-----HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCE
Confidence 345677888888888877642 45456668888888888885 777655567778888898
Q ss_pred EEEecCchhHHhhccCcccccccccccCcccEEeccCCCCcccc
Q 003996 686 LEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCL 729 (780)
Q Consensus 686 L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~ 729 (780)
|+++++. +..++.+.. ..+..+|+|++|++.+|+ ...+
T Consensus 125 L~l~~N~-l~~~~~~~~----~~~~~l~~L~~L~l~~n~-~~~~ 162 (168)
T 2ell_A 125 LDLFNCE-VTNLNDYRE----SVFKLLPQLTYLDGYDRE-DQEA 162 (168)
T ss_dssp EECCSSG-GGTSTTHHH----HHHTTCSSCCEETTEETT-SCBC
T ss_pred EEeeCCc-CcchHHHHH----HHHHhCccCcEecCCCCC-hhhc
Confidence 8888764 444432000 134578889999888874 4445
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.77 E-value=5.1e-09 Score=99.59 Aligned_cols=136 Identities=18% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHH
Q 003996 524 FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEEL 603 (780)
Q Consensus 524 ~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L 603 (780)
.++++|+.|.+.++... .++ .+....++|++|+|++|.+..+.
T Consensus 16 ~~~~~L~~L~l~~n~l~---~i~-~~~~~~~~L~~L~Ls~N~l~~~~--------------------------------- 58 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP---VIE-NLGATLDQFDAIDFSDNEIRKLD--------------------------------- 58 (176)
T ss_dssp ECTTSCEEEECTTSCCC---SCC-CGGGGTTCCSEEECCSSCCCEEC---------------------------------
T ss_pred CCcCCceEEEeeCCCCc---hhH-HhhhcCCCCCEEECCCCCCCccc---------------------------------
Confidence 35667777777766543 343 22233337777777777665442
Q ss_pred hcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCC
Q 003996 604 TASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQL 683 (780)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L 683 (780)
.+..+++|++|++++|.+..++.+ .++.+++|+.|+|++|. ++.+|.+..+..+++|
T Consensus 59 -----------------~l~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 59 -----------------GFPLLRRLKTLLVNNNRICRIGEG-----LDQALPDLTELILTNNS-LVELGDLDPLASLKSL 115 (176)
T ss_dssp -----------------CCCCCSSCCEEECCSSCCCEECSC-----HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTC
T ss_pred -----------------ccccCCCCCEEECCCCcccccCcc-----hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCC
Confidence 233455666666666666543221 23556666666666664 5555433355566666
Q ss_pred cEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 684 QHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 684 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
+.|+++++. +..++... ...+..+|+|++|++.+++
T Consensus 116 ~~L~l~~N~-i~~~~~~~----~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 116 TYLCILRNP-VTNKKHYR----LYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSSG-GGGSTTHH----HHHHHHCTTCSEETTEECC
T ss_pred CEEEecCCC-CCCcHhHH----HHHHHHCCccceeCCCcCC
Confidence 666666543 33332100 0013455666666655543
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.75 E-value=2.9e-08 Score=109.51 Aligned_cols=185 Identities=19% Similarity=0.166 Sum_probs=104.2
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF- 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L- 583 (780)
..++++.+.++.+..+|.. .++|++|.+.++... .+|. .+..|++|++++|.+..++.+. ++|++|
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~---~lp~----~~~~L~~L~l~~n~l~~l~~~~----~~L~~L~ 137 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT---ELPE----LPQSLKSLLVDNNNLKALSDLP----PLLEYLG 137 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS---SCCC----CCTTCCEEECCSSCCSCCCSCC----TTCCEEE
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC---cccc----ccCCCcEEECCCCccCcccCCC----CCCCEEE
Confidence 3578899999988777753 589999999988764 4664 2489999999999888765421 455555
Q ss_pred ---hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccc--------------cC
Q 003996 584 ---CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHY--------------NQ 646 (780)
Q Consensus 584 ---~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--------------~~ 646 (780)
+....+| .+..+++|++|++++|.++.++.. ..
T Consensus 138 L~~n~l~~lp------------------------------~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 138 VSNNQLEKLP------------------------------ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 187 (454)
T ss_dssp CCSSCCSSCC------------------------------CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred CcCCCCCCCc------------------------------ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc
Confidence 1111112 233444455555544444322110 01
Q ss_pred CCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCc
Q 003996 647 LPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPEL 726 (780)
Q Consensus 647 lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L 726 (780)
+| .++.+++|+.|++++|. ++.+|.. .++|+.|++++|. ++.++ .++.+++|++|+++++ ++
T Consensus 188 l~-~~~~l~~L~~L~l~~N~-l~~l~~~-----~~~L~~L~l~~n~-l~~lp---------~~~~l~~L~~L~l~~N-~l 249 (454)
T 1jl5_A 188 LP-ELQNLPFLTAIYADNNS-LKKLPDL-----PLSLESIVAGNNI-LEELP---------ELQNLPFLTTIYADNN-LL 249 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC-CSSCCCC-----CTTCCEEECCSSC-CSSCC---------CCTTCTTCCEEECCSS-CC
T ss_pred Cc-cccCCCCCCEEECCCCc-CCcCCCC-----cCcccEEECcCCc-CCccc---------ccCCCCCCCEEECCCC-cC
Confidence 22 14455555555555553 4443311 1355555555442 33332 2456777777777775 35
Q ss_pred cccCCCCCccCCcccceeecccCCCCCCcC
Q 003996 727 RCLYPGMHTSEWPALKNLVACNCDKITLSQ 756 (780)
Q Consensus 727 ~~~~~~~~~~~~p~L~~L~i~~C~~L~~~~ 756 (780)
+.++. .+++|+.|++++|. ++.+|
T Consensus 250 ~~l~~-----~~~~L~~L~l~~N~-l~~l~ 273 (454)
T 1jl5_A 250 KTLPD-----LPPSLEALNVRDNY-LTDLP 273 (454)
T ss_dssp SSCCS-----CCTTCCEEECCSSC-CSCCC
T ss_pred Ccccc-----cccccCEEECCCCc-ccccC
Confidence 55532 24677777777764 44444
No 121
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.1e-07 Score=98.18 Aligned_cols=168 Identities=8% Similarity=0.067 Sum_probs=104.6
Q ss_pred cccchHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC---C-C-EEEEEEeCCCCCHHHHHHH
Q 003996 156 AFESRVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASENKL---F-D-RVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~i~~~ 226 (780)
.+.||++++++|...|. .+..+.+.|+|++|+|||++|+.|++....... . . ..++++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987776 456788899999999999999999998864221 1 1 3566777777888899999
Q ss_pred HHHHhCCCCC-chhHHHHHHHHHHHH--hcCCeEEEEEeCCCCccCccccCCCCC-CCCCCcE--EEEEeCChH-----H
Q 003996 227 IAEKLGLELS-DEAEYRRASRLYERL--KNENKILVILDNIWKHLDLDTVGIPFG-NDHEGCR--LLLTARDIN-----V 295 (780)
Q Consensus 227 i~~~l~~~~~-~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~--IlvTTR~~~-----v 295 (780)
|++++..... ..........++..+ ..+++++++||+++....-+.+...+. ....+++ ||.++...+ +
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 9999954321 111123334444443 234689999999976532111111110 0011222 333343221 1
Q ss_pred H----hhcCCCceEecCCCCHHHHHHHHHHHcC
Q 003996 296 L----LSMGSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 296 ~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
. ..+. ...+.+.+++.++-.+++.+++.
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1221 24688999999999999988764
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.74 E-value=2.9e-08 Score=98.73 Aligned_cols=131 Identities=21% Similarity=0.196 Sum_probs=104.2
Q ss_pred hhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhH
Q 003996 503 ALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 503 ~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L 580 (780)
.+..++++.+.++.+..++.. ..+++|+.|.+.++.. ..++...|.++++|++|+|++|.+..++.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~--------- 105 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLGTNQLTVLPS--------- 105 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCT---------
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECCCCcCCccCh---------
Confidence 347899999999999876432 4789999999999886 47888888999999999999999876553
Q ss_pred HHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEE
Q 003996 581 TRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRL 660 (780)
Q Consensus 581 ~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L 660 (780)
..+..+++|++|+|++|.+.. +|..+..+++|+.|
T Consensus 106 ---------------------------------------~~~~~l~~L~~L~Ls~N~l~~------lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 106 ---------------------------------------AVFDRLVHLKELFMCCNKLTE------LPRGIERLTHLTHL 140 (229)
T ss_dssp ---------------------------------------TTTTTCTTCCEEECCSSCCCS------CCTTGGGCTTCSEE
T ss_pred ---------------------------------------hHhCcchhhCeEeccCCcccc------cCcccccCCCCCEE
Confidence 124567888899999988874 44457888999999
Q ss_pred eeccCccCccccchhhHhhccCCcEEEEecCc
Q 003996 661 IVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 661 ~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
+|+++. ++.+++ ..+..+++|+.|.+++.+
T Consensus 141 ~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 141 ALDQNQ-LKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred ECCCCc-CCccCH-HHHhCCCCCCEEEeeCCC
Confidence 999885 777753 457788999999987643
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.74 E-value=3.1e-08 Score=111.69 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=107.2
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-h
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF-C 584 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L-~ 584 (780)
+++.+.+.++.+..+|... +++|++|.+.+|... .+| ..+++|++|+|++|.+..++. +++ +|++| .
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~---~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI---SLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS---CCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc---ccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 5677777777776666533 467888887777653 455 346777888888877776665 333 44444 0
Q ss_pred hcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeecc
Q 003996 585 REVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWG 664 (780)
Q Consensus 585 ~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~ 664 (780)
....+ .. ++. .+++|+.|++++|.++. +|. .+++|+.|+|++
T Consensus 128 s~N~l--------------------------~~-lp~--~l~~L~~L~Ls~N~l~~------lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 128 DNNQL--------------------------TM-LPE--LPALLEYINADNNQLTM------LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CSSCC--------------------------SC-CCC--CCTTCCEEECCSSCCSC------CCC---CCTTCCEEECCS
T ss_pred CCCcC--------------------------CC-CCC--cCccccEEeCCCCccCc------CCC---cCCCcCEEECCC
Confidence 00000 00 111 46778888888877764 332 357788888888
Q ss_pred CccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCccccee
Q 003996 665 CDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNL 744 (780)
Q Consensus 665 c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L 744 (780)
|. ++.+|. +. ++|+.|+++++ .++.++. -.. . -....+.|++|+|+++ +++.+|. ....+++|+.|
T Consensus 170 N~-L~~lp~---l~--~~L~~L~Ls~N-~L~~lp~-~~~-~--L~~~~~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L 235 (571)
T 3cvr_A 170 NQ-LTFLPE---LP--ESLEALDVSTN-LLESLPA-VPV-R--NHHSEETEIFFRCREN-RITHIPE--NILSLDPTCTI 235 (571)
T ss_dssp SC-CSCCCC---CC--TTCCEEECCSS-CCSSCCC-CC-----------CCEEEECCSS-CCCCCCG--GGGGSCTTEEE
T ss_pred CC-CCCcch---hh--CCCCEEECcCC-CCCchhh-HHH-h--hhcccccceEEecCCC-cceecCH--HHhcCCCCCEE
Confidence 75 666653 33 78888888764 4555442 000 0 0011122288888776 4667743 33457888888
Q ss_pred ecccCC
Q 003996 745 VACNCD 750 (780)
Q Consensus 745 ~i~~C~ 750 (780)
++++|+
T Consensus 236 ~L~~N~ 241 (571)
T 3cvr_A 236 ILEDNP 241 (571)
T ss_dssp ECCSSS
T ss_pred EeeCCc
Confidence 888876
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.73 E-value=6.6e-09 Score=112.46 Aligned_cols=121 Identities=16% Similarity=0.059 Sum_probs=68.9
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccC-----ccccchhhHhhccCCcEEEEecCchhH
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKL-----KYIFSASTIQSLEQLQHLEIRLCKSLQ 695 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l-----~~l~~~~~l~~L~~L~~L~l~~c~~l~ 695 (780)
.+..+++|++|++++|.+.........|.++..+++|+.|+|++|. + ..++ ..+..+++|+.|+|++|. +.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~-i~ 257 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCL-LS 257 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCC-CC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCC-Cc
Confidence 3445677888888877665211000122246677788888888876 4 3333 456677888888887765 32
Q ss_pred HhhccCcccccccc--cccCcccEEeccCCCCccc-----cCCCCCccCCcccceeecccCC
Q 003996 696 EIISEDRTDQVTAY--FVFPRVTTLKLDGLPELRC-----LYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 696 ~l~~~~~~~~~~~~--~~fp~L~~L~l~~~~~L~~-----~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
...... ....+ +.+++|++|+|++|. +.. ++... ...+|+|+.|++++|+
T Consensus 258 ~~~~~~---l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 258 ARGAAA---VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI-DEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHH---HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred hhhHHH---HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence 221000 00012 237788888888764 443 42111 1346888888887775
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.72 E-value=5e-08 Score=96.36 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=102.4
Q ss_pred ccccCCchhhhccceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 494 AVWEWPDEDALKKCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 494 ~~~~~~~~~~~~~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
.+...|. ..+..++.+.+.++.+..++.. ..+++|+.|.+.++... .+++..|.++++|++|+|++|.+..++.
T Consensus 22 ~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 22 GLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp CCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---EECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---CcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence 3444443 2346899999999999877642 46899999999998764 5656668999999999999999887654
Q ss_pred cccCCChhHHHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCcc
Q 003996 572 LTLGKLPKVTRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMV 651 (780)
Q Consensus 572 L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~ 651 (780)
..+..+++|++|+|++|.+..+ .|..+
T Consensus 98 ------------------------------------------------~~f~~l~~L~~L~L~~N~l~~~-----~~~~~ 124 (220)
T 2v9t_B 98 ------------------------------------------------SLFEGLFSLQLLLLNANKINCL-----RVDAF 124 (220)
T ss_dssp ------------------------------------------------TTTTTCTTCCEEECCSSCCCCC-----CTTTT
T ss_pred ------------------------------------------------hHccCCCCCCEEECCCCCCCEe-----CHHHc
Confidence 1244567788888888877643 23356
Q ss_pred ccccCccEEeeccCccCccccchhhHhhccCCcEEEEecC
Q 003996 652 PCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 652 ~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 691 (780)
..+++|+.|+|+++. ++.++ ...+..+++|+.|++++.
T Consensus 125 ~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNK-LQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCc-CCEEC-HHHHhCCCCCCEEEeCCC
Confidence 777888888888886 66664 234667888888888754
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.70 E-value=1.1e-09 Score=118.69 Aligned_cols=210 Identities=16% Similarity=0.115 Sum_probs=131.0
Q ss_pred ccceEEEeecCccccc-----CC-CCCCCCccEEEeecCCCCC-CcccchHH------HhcCCcceEEEecCCCcCc---
Q 003996 505 KKCYAISLLNSSIHEV-----SE-EFECPQLEFLYIDPQITFS-EVNIPDNF------FKGMKKLRVVDLTRIEFGQ--- 568 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~-----~~-~~~~~~Lr~L~l~~~~~~~-~~~i~~~~------~~~l~~LrvLdL~~~~~~~--- 568 (780)
..++++.+.++.+... .. ...+++|++|.+.++.... ...+|..+ |.++++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4688999988876432 11 2368899999998764321 02344443 4788999999999998876
Q ss_pred --ccccccCCChhHHHh-hhcccCCCCCCCccCCHHHHhccccccccccccccccccccc---------ccccccccccc
Q 003996 569 --LRSLTLGKLPKVTRF-CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVL---------PNLEALELNAI 636 (780)
Q Consensus 569 --L~~L~i~~L~~L~~L-~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~ 636 (780)
++. .+.++++|++| .....+ .......+...+..+ ++|++|++++|
T Consensus 112 ~~l~~-~l~~~~~L~~L~L~~n~l---------------------~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 112 EPLID-FLSKHTPLEHLYLHNNGL---------------------GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HHHHH-HHHHCTTCCEEECCSSCC---------------------HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HHHHH-HHHhCCCCCEEECcCCCC---------------------CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 332 35556666666 100000 000000001112223 89999999998
Q ss_pred cccccccccCCC---CccccccCccEEeeccCccCcccc---chh-hHhhccCCcEEEEecCchh----HHhhccCcccc
Q 003996 637 NADEIWHYNQLP---GMVPCFQSLTRLIVWGCDKLKYIF---SAS-TIQSLEQLQHLEIRLCKSL----QEIISEDRTDQ 705 (780)
Q Consensus 637 ~l~~l~~~~~lP---~~~~~l~~L~~L~L~~c~~l~~l~---~~~-~l~~L~~L~~L~l~~c~~l----~~l~~~~~~~~ 705 (780)
.+... .+| ..+..+++|+.|+|++|. +.... .++ .+..+++|+.|+|++|.-- ..++.
T Consensus 170 ~l~~~----~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~------ 238 (386)
T 2ca6_A 170 RLENG----SMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI------ 238 (386)
T ss_dssp CCTGG----GHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH------
T ss_pred CCCcH----HHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH------
Confidence 87521 122 235677899999999996 55210 123 6778999999999987632 34443
Q ss_pred cccccccCcccEEeccCCCCcccc-----CCCCCccCCcccceeecccCC
Q 003996 706 VTAYFVFPRVTTLKLDGLPELRCL-----YPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 706 ~~~~~~fp~L~~L~l~~~~~L~~~-----~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+..+|+|++|+|++|. +... +.....+.+|+|+.|++++|+
T Consensus 239 --~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 239 --ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp --HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred --HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 45678999999999985 4332 111111347999999998876
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=9.3e-09 Score=94.76 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=6.7
Q ss_pred hcCCcceEEEecCCCc
Q 003996 551 KGMKKLRVVDLTRIEF 566 (780)
Q Consensus 551 ~~l~~LrvLdL~~~~~ 566 (780)
..+++|++|+|++|.+
T Consensus 39 ~~l~~L~~L~l~~n~l 54 (149)
T 2je0_A 39 DEFEELEFLSTINVGL 54 (149)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred hhcCCCcEEECcCCCC
Confidence 3344444444444433
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.68 E-value=7e-08 Score=95.31 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=98.6
Q ss_pred hccceEEEeecCcccccCC---CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhH
Q 003996 504 LKKCYAISLLNSSIHEVSE---EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKV 580 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L 580 (780)
+..++++.+..+.+..++. ...+++|++|.+.++.. ..+++..|.++++|++|+|++|.+..++.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~--------- 98 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLTSNRLENVQH--------- 98 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCCCCG---------
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---CEECHHHhCCCCCCCEEECCCCccCccCH---------
Confidence 4567899999999887743 24799999999998876 46777778999999999999999876553
Q ss_pred HHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEE
Q 003996 581 TRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRL 660 (780)
Q Consensus 581 ~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L 660 (780)
..+..+++|++|+|++|.+..+ .|..+..+++|+.|
T Consensus 99 ---------------------------------------~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L 134 (220)
T 2v70_A 99 ---------------------------------------KMFKGLESLKTLMLRSNRITCV-----GNDSFIGLSSVRLL 134 (220)
T ss_dssp ---------------------------------------GGGTTCSSCCEEECTTSCCCCB-----CTTSSTTCTTCSEE
T ss_pred ---------------------------------------hHhcCCcCCCEEECCCCcCCeE-----CHhHcCCCccCCEE
Confidence 1345677888888888877643 23446777888888
Q ss_pred eeccCccCccccchhhHhhccCCcEEEEecC
Q 003996 661 IVWGCDKLKYIFSASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 661 ~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 691 (780)
+|+++. ++.++ ...+..+++|+.|+++++
T Consensus 135 ~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 135 SLYDNQ-ITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSC-CCCBC-TTTTTTCTTCCEEECCSC
T ss_pred ECCCCc-CCEEC-HHHhcCCCCCCEEEecCc
Confidence 888875 66653 146677888888888754
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.67 E-value=3.3e-08 Score=115.64 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=74.6
Q ss_pred ccceEEEeecCcccccCCC-CCCCCccEEEeecCCCC-CCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 505 KKCYAISLLNSSIHEVSEE-FECPQLEFLYIDPQITF-SEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~-~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
..++++++..+.+...+.. ....+|+.+.+...... ....++++.|..++.|++|+|++|.+..++. .+++|++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA-NIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCG-GGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh-hhcCCCCCCE
Confidence 3577888877766554432 23344444443321111 0134667778999999999999999988876 5667777776
Q ss_pred h---hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccE
Q 003996 583 F---CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTR 659 (780)
Q Consensus 583 L---~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~ 659 (780)
| .+.+. .++..+..+++|++|+|++|.++. +|..++.|++|+.
T Consensus 252 L~Ls~N~l~----------------------------~lp~~~~~l~~L~~L~Ls~N~l~~------lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 252 LYLNGNSLT----------------------------ELPAEIKNLSNLRVLDLSHNRLTS------LPAELGSCFQLKY 297 (727)
T ss_dssp CBCTTSCCS----------------------------CCCGGGGGGTTCCEEECTTSCCSS------CCSSGGGGTTCSE
T ss_pred EEeeCCcCc----------------------------ccChhhhCCCCCCEEeCcCCcCCc------cChhhcCCCCCCE
Confidence 6 11111 122356677888888888887763 4555778888888
Q ss_pred EeeccCccCccccchhhHhhccCCcEEEEecCc
Q 003996 660 LIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 660 L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
|+|++|. ++.+| ..++.|++|+.|+|+++.
T Consensus 298 L~L~~N~-l~~lp--~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 298 FYFFDNM-VTTLP--WEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EECCSSC-CCCCC--SSTTSCTTCCCEECTTSC
T ss_pred EECCCCC-CCccC--hhhhcCCCccEEeCCCCc
Confidence 8888875 77775 457778888888887655
No 130
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.67 E-value=1.3e-07 Score=99.23 Aligned_cols=185 Identities=11% Similarity=0.104 Sum_probs=113.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH---HHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI---KKIQGEIAE 229 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~---~~i~~~i~~ 229 (780)
....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+..... .+.......
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHh
Confidence 45578999999999999888766656999999999999999999988632210011233444332111 111111110
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChH-HHh-hcCCCceE
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDIN-VLL-SMGSKDNF 305 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~-~~~~~~~~ 305 (780)
.. + +..+++.++|+|+++... ..+.+...+.....++++|+||.... +.. .......+
T Consensus 95 ~~--~----------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 95 TA--P----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp SC--C----------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred cC--C----------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 00 0 112357899999997542 22333333333345677888876643 111 12233489
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 003996 306 LIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARA 356 (780)
Q Consensus 306 ~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 356 (780)
.+.+++.++...++...+...... --.+....|++.++|.+..+......
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999998876432211 12356778889999999866544443
No 131
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.65 E-value=7.3e-08 Score=111.43 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=80.0
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
....+++|+.|++++|+... ...|..+..+++|+.|+|++|. ++.+++ ..+..+++|+.|+|+++ .++.++.
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~----~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~- 535 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHN-NFFSLDT- 535 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCBCCC-
T ss_pred ccccchhhhhhhhhhccccc----ccCchhhhhccccCEEECCCCc-cCCcCh-HHHcCCCCCCEEECCCC-cCCCCCh-
Confidence 34567888888888876432 1345567888999999999996 777742 46788999999999865 4555543
Q ss_pred CcccccccccccCcccEEeccCCCCccccCCCCCccCC-cccceeecccC
Q 003996 701 DRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEW-PALKNLVACNC 749 (780)
Q Consensus 701 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~-p~L~~L~i~~C 749 (780)
..+..+++|++|+|+++ ++..+++... ..+ ++|+.|+++++
T Consensus 536 ------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 536 ------FPYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQN 577 (635)
T ss_dssp ------GGGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTC
T ss_pred ------hHHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCC
Confidence 24567889999999986 4666643322 345 57999988653
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.64 E-value=4.6e-08 Score=90.03 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=96.9
Q ss_pred hccceEEEeecCccc--ccCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc-ccccccCCChh
Q 003996 504 LKKCYAISLLNSSIH--EVSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ-LRSLTLGKLPK 579 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~--~~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~-L~~L~i~~L~~ 579 (780)
+..++++.+.++.+. .++.. ..+++|+.|.+.++... .+ ..|.++++|++|+|++|.+.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-------- 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SI--ANLPKLNKLKKLELSDNRVSGGLEV-------- 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---CC--TTCCCCTTCCEEECCSSCCCSCTHH--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---Cc--hhhhcCCCCCEEECCCCcccchHHH--------
Confidence 367899999999887 66655 47899999999988764 33 457899999999999998876 332
Q ss_pred HHHhhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccE
Q 003996 580 VTRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTR 659 (780)
Q Consensus 580 L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~ 659 (780)
....+++|++|++++|.++.+. .|..++.+++|+.
T Consensus 83 -----------------------------------------~~~~l~~L~~L~ls~N~i~~~~----~~~~~~~l~~L~~ 117 (149)
T 2je0_A 83 -----------------------------------------LAEKCPNLTHLNLSGNKIKDLS----TIEPLKKLENLKS 117 (149)
T ss_dssp -----------------------------------------HHHHCTTCCEEECTTSCCCSHH----HHGGGGGCTTCCE
T ss_pred -----------------------------------------HhhhCCCCCEEECCCCcCCChH----HHHHHhhCCCCCE
Confidence 2345788999999998887542 1234778899999
Q ss_pred EeeccCccCccccch--hhHhhccCCcEEEEe
Q 003996 660 LIVWGCDKLKYIFSA--STIQSLEQLQHLEIR 689 (780)
Q Consensus 660 L~L~~c~~l~~l~~~--~~l~~L~~L~~L~l~ 689 (780)
|++++|. +..+++. ..+..+++|+.|+++
T Consensus 118 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 9999986 7776532 357788888888765
No 133
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=2.9e-07 Score=98.92 Aligned_cols=181 Identities=11% Similarity=0.152 Sum_probs=110.2
Q ss_pred CcccccchHHHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhccCCCC-------------------EEEEE
Q 003996 153 GYEAFESRVSTLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASENKLFD-------------------RVVFS 212 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~-------------------~~~wv 212 (780)
....++||+..++.+..++..+. ...+.|+|++|+||||+|+.+++.......+. ..+.+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 44568999999999999987554 35788999999999999999998775322110 11222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEE
Q 003996 213 EVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLK----NENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRL 286 (780)
Q Consensus 213 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~I 286 (780)
..+..... +....+.+.+. .+++.++|+||++... ..+.+...+.....+..+
T Consensus 94 ~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~ 152 (373)
T 1jr3_A 94 DAASRTKV---------------------EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 152 (373)
T ss_dssp ETTCSCCS---------------------SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEE
T ss_pred cccccCCH---------------------HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEE
Confidence 21110000 01112222222 2357899999996542 223232222222345667
Q ss_pred EEEeCChHH-Hh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 287 LLTARDINV-LL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 287 lvTTR~~~v-~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
|++|....- .. .......+.+.+++.++..+++.+.+...... --.+....|++.++|.|..+..+..
T Consensus 153 Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 777764431 11 22234588999999999999998766321111 1135677899999999998776553
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=2.7e-07 Score=88.68 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=88.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccC-----CCCEEEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENK-----LFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
....++||+++++.+.+++.....+.+.|+|++|+|||++|+.+++...... .....+++..+. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 4557899999999999999876667789999999999999999998864321 012344443321 10
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---------CccccCCCCCCCCCCcEEEEEeCChHHHh
Q 003996 228 AEKLGLELSDEAEYRRASRLYERL-KNENKILVILDNIWKHL---------DLDTVGIPFGNDHEGCRLLLTARDINVLL 297 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IlvTTR~~~v~~ 297 (780)
...............+.+.+ ...++.+||+||++... .+..+...+.. ..+..+|+||.......
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 ----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 165 (195)
T ss_dssp ----TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHH
T ss_pred ----ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHH
Confidence 00001111122233333333 23467899999996542 11111111111 22445777776544221
Q ss_pred -------hcCCCceEecCCCCHHHHHHHH
Q 003996 298 -------SMGSKDNFLIGNLNEEEAWRLF 319 (780)
Q Consensus 298 -------~~~~~~~~~l~~L~~~e~~~Lf 319 (780)
.......+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1122236889999988876654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=2e-08 Score=97.49 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=24.4
Q ss_pred CccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCccc
Q 003996 528 QLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLR 570 (780)
Q Consensus 528 ~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~ 570 (780)
.++.+.+.+.... ...+|. .|.++++|++|+|++|.+..++
T Consensus 24 ~l~~~~l~~~~~~-l~~l~~-~~~~l~~L~~L~ls~n~l~~l~ 64 (198)
T 1ds9_A 24 EAEKVELHGMIPP-IEKMDA-TLSTLKACKHLALSTNNIEKIS 64 (198)
T ss_dssp TCSEEECCBCCTT-CCCCHH-HHHHTTTCSEEECSEEEESCCC
T ss_pred chheeEeccccCc-HhhhhH-HHhcCCCCCEEECCCCCCcccc
Confidence 4555555543221 123443 4678888888888888776654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=1.2e-07 Score=90.05 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=102.4
Q ss_pred hccceEEEeecCcccccCCCCCCC-CccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 504 LKKCYAISLLNSSIHEVSEEFECP-QLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
...++.+.+.++.+..++....+. +|+.|.+.++... .+ ..|.++++|++|+|++|.+..++.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~---~~--~~l~~l~~L~~L~Ls~N~l~~~~~----------- 81 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---KL--DGFPLLRRLKTLLVNNNRICRIGE----------- 81 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC---EE--CCCCCCSSCCEEECCSSCCCEECS-----------
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCC---cc--cccccCCCCCEEECCCCcccccCc-----------
Confidence 357899999999988776555544 9999999998764 34 347899999999999998876542
Q ss_pred hhhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEee
Q 003996 583 FCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIV 662 (780)
Q Consensus 583 L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L 662 (780)
..+..+++|++|++++|.+..++.. ..+..+++|+.|++
T Consensus 82 -------------------------------------~~~~~l~~L~~L~L~~N~i~~~~~~----~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 82 -------------------------------------GLDQALPDLTELILTNNSLVELGDL----DPLASLKSLTYLCI 120 (176)
T ss_dssp -------------------------------------CHHHHCTTCCEEECCSCCCCCGGGG----GGGGGCTTCCEEEC
T ss_pred -------------------------------------chhhcCCCCCEEECCCCcCCcchhh----HhhhcCCCCCEEEe
Confidence 1235688999999999988654330 14778899999999
Q ss_pred ccCccCccccch--hhHhhccCCcEEEEecCchhH
Q 003996 663 WGCDKLKYIFSA--STIQSLEQLQHLEIRLCKSLQ 695 (780)
Q Consensus 663 ~~c~~l~~l~~~--~~l~~L~~L~~L~l~~c~~l~ 695 (780)
++|. +..+|.. ..+..+|+|+.|+++++..-+
T Consensus 121 ~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9997 6666521 147899999999999876443
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.51 E-value=3.9e-07 Score=87.81 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=82.1
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+.+.+.++.+..+|... .+++++|.+.++.. ..+| ..|.++++|++|+|++|.+..++.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i---~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~---------------- 71 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF---TLVP-KELSNYKHLTLIDLSNNRISTLSN---------------- 71 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC---CSCC-GGGGGCTTCCEEECCSSCCCCCCT----------------
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC---chhH-HHhhcccCCCEEECCCCcCCEeCH----------------
Confidence 45666666666666432 46888888888775 3566 457888888888888888776543
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
..+..+++|++|+|++|.++.+. |..+..+++|+.|+|+++.
T Consensus 72 --------------------------------~~f~~l~~L~~L~Ls~N~l~~i~-----~~~f~~l~~L~~L~L~~N~- 113 (193)
T 2wfh_A 72 --------------------------------QSFSNMTQLLTLILSYNRLRCIP-----PRTFDGLKSLRLLSLHGND- 113 (193)
T ss_dssp --------------------------------TTTTTCTTCCEEECCSSCCCBCC-----TTTTTTCTTCCEEECCSSC-
T ss_pred --------------------------------hHccCCCCCCEEECCCCccCEeC-----HHHhCCCCCCCEEECCCCC-
Confidence 13455677777777777776443 2236667777777777775
Q ss_pred CccccchhhHhhccCCcEEEEec
Q 003996 668 LKYIFSASTIQSLEQLQHLEIRL 690 (780)
Q Consensus 668 l~~l~~~~~l~~L~~L~~L~l~~ 690 (780)
++.++ ...+..+++|+.|++++
T Consensus 114 l~~~~-~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 114 ISVVP-EGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCBCC-TTTTTTCTTCCEEECCS
T ss_pred CCeeC-hhhhhcCccccEEEeCC
Confidence 66654 12456677777777764
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.51 E-value=3.7e-07 Score=86.67 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=82.6
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+.+.+..+.+..+|.. -.++|++|.+.++.. ..+++..|.++++|++|+|++|.+..++.
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------- 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSQNQIQSLPD---------------- 69 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSCCCCCCT----------------
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcc---cEeCHHHhcCcccccEEECCCCcceEeCh----------------
Confidence 4556666666666532 246888888887765 35666667888888888888887765443
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
..+..+++|++|++++|.++.+. |..++.+++|+.|+++++.
T Consensus 70 --------------------------------~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~- 111 (177)
T 2o6r_A 70 --------------------------------GVFDKLTKLTILYLHENKLQSLP-----NGVFDKLTQLKELALDTNQ- 111 (177)
T ss_dssp --------------------------------TTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSC-
T ss_pred --------------------------------hHccCCCccCEEECCCCCccccC-----HHHhhCCcccCEEECcCCc-
Confidence 12345677777777777776432 2235667778888887774
Q ss_pred CccccchhhHhhccCCcEEEEecCc
Q 003996 668 LKYIFSASTIQSLEQLQHLEIRLCK 692 (780)
Q Consensus 668 l~~l~~~~~l~~L~~L~~L~l~~c~ 692 (780)
++.+++ ..+..+++|+.|+++++.
T Consensus 112 l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 112 LKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ceEeCH-HHhcCCcccCEEEecCCC
Confidence 666642 234567777777776543
No 139
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.49 E-value=1.9e-07 Score=105.18 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=104.4
Q ss_pred ccceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh-
Q 003996 505 KKCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF- 583 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L- 583 (780)
..++.|.+.+|.+..+| ..+++|++|.+.+|... .+|. |.+ +|++|+|++|.+..++. .+++|++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~---~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLS---TLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS---CCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEE
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC---Ccch--hhc--CCCEEECCCCcCCCCCC----cCccccEEe
Confidence 57999999999998887 45899999999998764 4776 444 89999999999988776 46666666
Q ss_pred hhcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeec
Q 003996 584 CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVW 663 (780)
Q Consensus 584 ~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~ 663 (780)
.....+ .. ++. .+++|++|+|++|.++. +|. ++ ++|+.|+|+
T Consensus 147 Ls~N~l--------------------------~~-lp~--~l~~L~~L~Ls~N~L~~------lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 147 ADNNQL--------------------------TM-LPE--LPTSLEVLSVRNNQLTF------LPE-LP--ESLEALDVS 188 (571)
T ss_dssp CCSSCC--------------------------SC-CCC--CCTTCCEEECCSSCCSC------CCC-CC--TTCCEEECC
T ss_pred CCCCcc--------------------------Cc-CCC--cCCCcCEEECCCCCCCC------cch-hh--CCCCEEECc
Confidence 110000 00 111 45678888888877764 343 33 788888888
Q ss_pred cCccCccccchhhHhhccCC-------cEEEEecCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 664 GCDKLKYIFSASTIQSLEQL-------QHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 664 ~c~~l~~l~~~~~l~~L~~L-------~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
+|. ++.+|. +.. +| +.|+++++ .++.++. .+..+++|++|+|++++
T Consensus 189 ~N~-L~~lp~---~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~--------~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 189 TNL-LESLPA---VPV--RNHHSEETEIFFRCREN-RITHIPE--------NILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSC-CSSCCC---CC----------CCEEEECCSS-CCCCCCG--------GGGGSCTTEEEECCSSS
T ss_pred CCC-CCchhh---HHH--hhhcccccceEEecCCC-cceecCH--------HHhcCCCCCEEEeeCCc
Confidence 875 777653 222 55 88888754 4555553 34567888888888775
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.49 E-value=3e-07 Score=88.54 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=75.1
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccch-HHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPD-NFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCRE 586 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~-~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~ 586 (780)
+.+.+.++.+..+|... ..+++.|.+.++... .+++ .+|.++++|++|+|++|.+..+..
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------- 71 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG---RISSDGLFGRLPHLVKLELKRNQLTGIEP--------------- 71 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCSSCCCCBCT---------------
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCC---ccCCccccccCCCCCEEECCCCCCCCcCH---------------
Confidence 45666677776666533 337888888777653 3443 357788888888888887765422
Q ss_pred ccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCc
Q 003996 587 VKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCD 666 (780)
Q Consensus 587 l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~ 666 (780)
..+..+++|++|+|++|.++.+. |..+..+++|+.|+|+++.
T Consensus 72 ---------------------------------~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 72 ---------------------------------NAFEGASHIQELQLGENKIKEIS-----NKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSCCCCEEC-----SSSSTTCTTCCEEECCSSC
T ss_pred ---------------------------------hHcCCcccCCEEECCCCcCCccC-----HHHhcCCCCCCEEECCCCc
Confidence 13445566666666666665432 2235556667777776664
Q ss_pred cCccccchhhHhhccCCcEEEEec
Q 003996 667 KLKYIFSASTIQSLEQLQHLEIRL 690 (780)
Q Consensus 667 ~l~~l~~~~~l~~L~~L~~L~l~~ 690 (780)
++.++ ...+..+++|+.|++++
T Consensus 114 -l~~~~-~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 114 -ISCVM-PGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -CCEEC-TTSSTTCTTCCEEECTT
T ss_pred -CCeeC-HHHhhcCCCCCEEEeCC
Confidence 44442 13455666666666654
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.47 E-value=1e-07 Score=111.47 Aligned_cols=107 Identities=18% Similarity=0.085 Sum_probs=70.3
Q ss_pred CCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHh---hhcccCCCCCCCccCCHH
Q 003996 525 ECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRF---CREVKTPSTSPNRQESQE 601 (780)
Q Consensus 525 ~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L---~~~l~~P~~~l~~~~~l~ 601 (780)
.+++|+.|.+.++.. ..+|..+| ++++|++|+|++|.+..++. .|++|++|++| .+.+..
T Consensus 222 ~l~~L~~L~Ls~n~l---~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~------------ 284 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI---FNISANIF-KYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTS------------ 284 (727)
T ss_dssp CCCCCCEEECTTSCC---SCCCGGGG-GCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSS------------
T ss_pred cCCCCcEEECCCCCC---CCCChhhc-CCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCc------------
Confidence 456666666665554 24555543 56666666666666666554 45666666655 111111
Q ss_pred HHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccc
Q 003996 602 ELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYI 671 (780)
Q Consensus 602 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l 671 (780)
++..++.+++|++|+|++|.+.. +|..++.|++|+.|+|+++. +...
T Consensus 285 ----------------lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 285 ----------------LPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp ----------------CCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCEECTTSC-CCSH
T ss_pred ----------------cChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEEeCCCCc-cCCC
Confidence 12356788999999999998864 56568999999999999997 5543
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=2.9e-07 Score=104.24 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=31.9
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEec
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRL 690 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 690 (780)
++.+++|+.|+|++|.++.+ | .++.+++|+.|+|++|. ++.++....++.|++|+.|++++
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~l------p-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENV------D-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCC------G-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTT
T ss_pred hhcCCCCCEEECCCCCCCCC------c-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecC
Confidence 34455555566666555432 2 25555666666666654 44441014455566666666654
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.45 E-value=3.7e-08 Score=105.53 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=40.0
Q ss_pred ccceEEEeecCcccccCC-----C-CCCC-CccEEEeecCCCCCCcccchHHHhcC-----CcceEEEecCCCcCc
Q 003996 505 KKCYAISLLNSSIHEVSE-----E-FECP-QLEFLYIDPQITFSEVNIPDNFFKGM-----KKLRVVDLTRIEFGQ 568 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~~-----~-~~~~-~Lr~L~l~~~~~~~~~~i~~~~~~~l-----~~LrvLdL~~~~~~~ 568 (780)
..++++.+.++.+...+. . ..++ +|++|.+.++... ......|..+ +.|++|+|++|.+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC---HHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 457888888887765542 1 2456 7888888877653 2323333443 888888888887765
No 144
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=1.8e-06 Score=88.80 Aligned_cols=179 Identities=13% Similarity=0.148 Sum_probs=104.2
Q ss_pred CcccccchHHHHHHHHHHhhc-------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALTD-------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....++|.+..++.|.+.+.. .....+.|+|++|+|||++|+.+++..... .+.+..+.-.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH-
Confidence 456788999999998887642 345678999999999999999999876432 2333332211
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL------------D----LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 281 (780)
..... ........+.......++.+|++||++... . +..+...+. ...
T Consensus 89 -------------~~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 -------------KKFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CCSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------Hhccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 01111 112223344444444467899999996431 0 111111110 122
Q ss_pred CCcEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHH
Q 003996 282 EGCRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTV 353 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~ 353 (780)
.+..||.||....... .. .....+.+++.+.++..+++...+.......+ .....|++.+.| .|-.+..+
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 3566777777543221 11 12347889999999999999988763322111 113467777776 45455443
No 145
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.42 E-value=6.5e-06 Score=83.99 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=104.8
Q ss_pred cccchHHHHHHHHH-------Hhh---cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 156 AFESRVSTLKSIQN-------ALT---DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 156 ~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
.++|+.+.++.+.. .+. ......+.|+|++|+|||++|+.+++.... .. +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~~-~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----PF-IKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----SE-EEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----CE-EEEeCHHHh-------
Confidence 45666665555544 332 345678999999999999999999997532 22 222222100
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------------CccccCCCCCCCCCCcEEEEEe
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL---------------DLDTVGIPFGNDHEGCRLLLTA 290 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------------~~~~l~~~l~~~~~gs~IlvTT 290 (780)
.+ ............+.......++.+|++||++... .+..+............||.||
T Consensus 102 -----~g--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IG--FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TT--CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cC--CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 01 0111111222333333333468999999985420 0111111111122344567777
Q ss_pred CChHHHhh---cCC-CceEecCCCCH-HHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC------ChHHHHHHHHHHhc
Q 003996 291 RDINVLLS---MGS-KDNFLIGNLNE-EEAWRLFKIMNGDDVENCKFKSTAINVAQACGG------LPIALTTVARALRN 359 (780)
Q Consensus 291 R~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G------lPLai~~~~~~L~~ 359 (780)
........ ... ...+.+++++. ++...++.+... . -.+....|++.+.| .+-++..+-.....
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 77654332 111 34688999988 777777665321 1 13456788888887 44444444333333
Q ss_pred CCHHHHHHHHHHhcCC
Q 003996 360 KSLHEWKNALRELQTP 375 (780)
Q Consensus 360 ~~~~~w~~~l~~l~~~ 375 (780)
.....+..+++.+...
T Consensus 249 ~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 249 DPEYRVRKFLALLREE 264 (272)
T ss_dssp CGGGHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc
Confidence 3555666666655433
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.41 E-value=4.6e-07 Score=87.30 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=92.1
Q ss_pred cEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHhccccc
Q 003996 530 EFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELTASSDE 609 (780)
Q Consensus 530 r~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~ 609 (780)
+++.+.++.. ..+|..+ .+.|++|+|++|.+..++.
T Consensus 13 ~~l~~~~~~l---~~ip~~~---~~~l~~L~L~~n~i~~ip~-------------------------------------- 48 (193)
T 2wfh_A 13 TVVRCSNKGL---KVLPKGI---PRDVTELYLDGNQFTLVPK-------------------------------------- 48 (193)
T ss_dssp TEEECTTSCC---SSCCSCC---CTTCCEEECCSSCCCSCCG--------------------------------------
T ss_pred CEEEcCCCCC---CcCCCCC---CCCCCEEECCCCcCchhHH--------------------------------------
Confidence 4566665554 4667654 3578999999998875542
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEe
Q 003996 610 ISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIR 689 (780)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~ 689 (780)
.+..+++|+.|+|++|.++.+.. ..+..+++|+.|+|+++. ++.+++ ..+..+++|+.|+++
T Consensus 49 -----------~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 49 -----------ELSNYKHLTLIDLSNNRISTLSN-----QSFSNMTQLLTLILSYNR-LRCIPP-RTFDGLKSLRLLSLH 110 (193)
T ss_dssp -----------GGGGCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECC
T ss_pred -----------HhhcccCCCEEECCCCcCCEeCH-----hHccCCCCCCEEECCCCc-cCEeCH-HHhCCCCCCCEEECC
Confidence 45677889999999998875433 347788999999999986 777742 357889999999998
Q ss_pred cCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 690 LCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 690 ~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
++ .++.++. ..+..+++|+.|+|.+++
T Consensus 111 ~N-~l~~~~~-------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GN-DISVVPE-------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SS-CCCBCCT-------TTTTTCTTCCEEECCSSC
T ss_pred CC-CCCeeCh-------hhhhcCccccEEEeCCCC
Confidence 64 4655543 135578899999998875
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.41 E-value=2.8e-08 Score=114.12 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=62.1
Q ss_pred cccccccccc----cccccccccccCCCCccccccCccEEeeccCcc-CccccchhhHh-hccCCcEEEEecCchhHHhh
Q 003996 625 LPNLEALELN----AINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK-LKYIFSASTIQ-SLEQLQHLEIRLCKSLQEII 698 (780)
Q Consensus 625 l~~L~~L~l~----~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~-l~~l~~~~~l~-~L~~L~~L~l~~c~~l~~l~ 698 (780)
+++|+.|++. .++++..+....++..+..+++|+.|+|++|.+ +..- .+..+. .+++|+.|++++|. +....
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~-~~~~~~~~~~~L~~L~L~~n~-l~~~~ 479 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL-GLSYIGQYSPNVRWMLLGYVG-ESDEG 479 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH-HHHHHHHSCTTCCEEEECSCC-SSHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH-HHHHHHHhCccceEeeccCCC-CCHHH
Confidence 5667777775 233432211111222244567777777776653 2221 122232 36777777777654 32211
Q ss_pred ccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCCCCC
Q 003996 699 SEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCDKIT 753 (780)
Q Consensus 699 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~ 753 (780)
.. .-...+++|++|+|++|+ +..-........+|+|+.|++++|+ ++
T Consensus 480 ~~------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 480 LM------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HH------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HH------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 00 123456888888888886 4321001112357888888888887 54
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.41 E-value=8.8e-08 Score=109.90 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=42.5
Q ss_pred ccceEEEeecCcccccC-----CC-CCCCCccEEEeecCCCCC-CcccchHHHhcCCcceEEEecCCCcCcccccccCCC
Q 003996 505 KKCYAISLLNSSIHEVS-----EE-FECPQLEFLYIDPQITFS-EVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKL 577 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~-----~~-~~~~~Lr~L~l~~~~~~~-~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L 577 (780)
.+++++.+.++.+.... .. ..+++|++|.+.++.... .......++.++++|++|+|+++.+..++. .++++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhh
Confidence 45677777766543221 01 246777777776655320 001122345677777777777776665443 34555
Q ss_pred hhHHHh
Q 003996 578 PKVTRF 583 (780)
Q Consensus 578 ~~L~~L 583 (780)
++|++|
T Consensus 243 ~~L~~L 248 (592)
T 3ogk_B 243 ANLEEF 248 (592)
T ss_dssp TTCCEE
T ss_pred hHHHhh
Confidence 555555
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.40 E-value=3.9e-07 Score=87.78 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=94.3
Q ss_pred cEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHhccccc
Q 003996 530 EFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELTASSDE 609 (780)
Q Consensus 530 r~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~ 609 (780)
+++.+.++.. ..+|..++ ..|++|+|++|.+..++.-
T Consensus 11 ~~l~~s~~~l---~~ip~~~~---~~l~~L~l~~n~i~~~~~~------------------------------------- 47 (192)
T 1w8a_A 11 TTVDCTGRGL---KEIPRDIP---LHTTELLLNDNELGRISSD------------------------------------- 47 (192)
T ss_dssp TEEECTTSCC---SSCCSCCC---TTCSEEECCSCCCCSBCCS-------------------------------------
T ss_pred CEEEcCCCCc---CcCccCCC---CCCCEEECCCCcCCccCCc-------------------------------------
Confidence 6777776655 46776543 3889999999987665420
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEe
Q 003996 610 ISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIR 689 (780)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~ 689 (780)
..+..+++|++|+|++|.++.+ .|..+..+++|+.|+|+++. ++.+++ ..+..+++|++|+++
T Consensus 48 ----------~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 48 ----------GLFGRLPHLVKLELKRNQLTGI-----EPNAFEGASHIQELQLGENK-IKEISN-KMFLGLHQLKTLNLY 110 (192)
T ss_dssp ----------CSGGGCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCSCC-CCEECS-SSSTTCTTCCEEECC
T ss_pred ----------cccccCCCCCEEECCCCCCCCc-----CHhHcCCcccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECC
Confidence 1256788999999999998754 34568889999999999996 777742 347789999999999
Q ss_pred cCchhHHhhccCcccccccccccCcccEEeccCCC
Q 003996 690 LCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 690 ~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
++. +..++. ..+..+++|++|+|.+++
T Consensus 111 ~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 111 DNQ-ISCVMP-------GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSC-CCEECT-------TSSTTCTTCCEEECTTCC
T ss_pred CCc-CCeeCH-------HHhhcCCCCCEEEeCCCC
Confidence 754 554432 256678999999999875
No 150
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.37 E-value=4.6e-08 Score=108.49 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=27.7
Q ss_pred cceEEEeecCcccc-----cCCC-CCCCCccEEEeecCCCCCCcccchHHHhcCC----cceEEEecCCCcC
Q 003996 506 KCYAISLLNSSIHE-----VSEE-FECPQLEFLYIDPQITFSEVNIPDNFFKGMK----KLRVVDLTRIEFG 567 (780)
Q Consensus 506 ~~r~lsl~~~~~~~-----~~~~-~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~----~LrvLdL~~~~~~ 567 (780)
.++++.+.++.+.. ++.. ..+++|++|.+.++... ...+..++..++ +|++|+|++|.+.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 45555555555431 1111 23455666666554432 112223334444 4666666665554
No 151
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.36 E-value=2.4e-07 Score=92.77 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=103.6
Q ss_pred cccccch---HHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 154 YEAFESR---VSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 154 ~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
...|+|+ +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|++.+..... +.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG--
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH--
Confidence 3456653 3566677766665566789999999999999999999987654 345667766442110 00
Q ss_pred hCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----ccccCCCCCC-CCCCc-EEEEEeCChH---------H
Q 003996 231 LGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----LDTVGIPFGN-DHEGC-RLLLTARDIN---------V 295 (780)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs-~IlvTTR~~~---------v 295 (780)
...+.+ .++.+||+||++.... .+.+...+.. ...+. ++|+||+... +
T Consensus 97 ---------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ---------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ---------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ---------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 000111 2457999999865422 1111111100 01122 4777776322 1
Q ss_pred HhhcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 296 LLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
...+.....+.+.+++.++..+++...+..... .--.+....|++.++|.+..+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111112257899999999999999887642111 11245677899999999877665544
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.35 E-value=6.6e-06 Score=89.72 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=108.8
Q ss_pred CCCcccccchHHHH---HHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 151 NKGYEAFESRVSTL---KSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 151 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
|.....++|.+..+ ..+...+.......+.|+|++|+||||+|+.+++..... | ..++.. .....++ +++
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~-~~~~~~i-r~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAV-TSGVKEI-REA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETT-TCCHHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEec-cCCHHHH-HHH
Confidence 34566789999888 778888877777889999999999999999999876432 2 122221 1222221 111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEE-EeCChH--H-HhhcCC
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLL-TARDIN--V-LLSMGS 301 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~Ilv-TTR~~~--v-~~~~~~ 301 (780)
+ ..........++.+|++|+++... ..+.+...+. .+ ...+|. ||.+.. + ......
T Consensus 95 ~----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~~-~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 I----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-DG-TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp H----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHH-TT-SCEEEEEESSCGGGSSCHHHHTT
T ss_pred H----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-cC-ceEEEecCCCCcccccCHHHhCc
Confidence 1 111111223467999999997652 2222222221 11 233333 444432 1 112233
Q ss_pred CceEecCCCCHHHHHHHHHHHcCCC------CCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 003996 302 KDNFLIGNLNEEEAWRLFKIMNGDD------VENCKFKSTAINVAQACGGLPIALTTVARAL 357 (780)
Q Consensus 302 ~~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 357 (780)
...+.+.+++.++...++.+.+... ....--.+....|++.++|.+..+..+...+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4578899999999999998876431 1111234677888899999887666554443
No 153
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=9.2e-06 Score=82.30 Aligned_cols=180 Identities=12% Similarity=0.093 Sum_probs=98.6
Q ss_pred cccccchHHHHHHHHHHhh---c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRVSTLKSIQNALT---D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
...++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++..... .+.+..+...+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHh--
Confidence 4567888877777655442 1 234568899999999999999999876432 33444433211
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------Cc----cccCCCCC--CCCC
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL-------------DL----DTVGIPFG--NDHE 282 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~----~~l~~~l~--~~~~ 282 (780)
..... .......+.+......+.+|++|+++... .. ..+...+. ....
T Consensus 78 ------------~~~~~-~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 ------------VIGGL-GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ------------hccCh-hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 00111 11223334444444467999999997541 01 11111111 1123
Q ss_pred CcEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 003996 283 GCRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTV 353 (780)
Q Consensus 283 gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 353 (780)
+..||.||....... .. .....+.++..+.++-.+++...+...............+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 556777776544221 11 1235778999999999999988765222222222234677888877654 44433
No 154
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=1e-06 Score=99.68 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=92.8
Q ss_pred cceEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhh
Q 003996 506 KCYAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCR 585 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~ 585 (780)
.++.|.+.+|.+..+|....+++|++|.+.+|.. ..+|.. |.++++|++|+|++|.+..++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l---~~lp~~-~~~l~~L~~L~Ls~N~l~~lp--------------- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL---RALPPA-LAALRCLEVLQASDNALENVD--------------- 502 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC---CCCCGG-GGGCTTCCEEECCSSCCCCCG---------------
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccc---cccchh-hhcCCCCCEEECCCCCCCCCc---------------
Confidence 4778888888887777656788888888888775 356654 688888888888888876654
Q ss_pred cccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccC
Q 003996 586 EVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGC 665 (780)
Q Consensus 586 ~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c 665 (780)
.++.+++|+.|+|++|.++.+. .|..++.+++|+.|+|+++
T Consensus 503 -----------------------------------~l~~l~~L~~L~Ls~N~l~~~~----~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 503 -----------------------------------GVANLPRLQELLLCNNRLQQSA----AIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp -----------------------------------GGTTCSSCCEEECCSSCCCSSS----TTGGGGGCTTCCEEECTTS
T ss_pred -----------------------------------ccCCCCCCcEEECCCCCCCCCC----CcHHHhcCCCCCEEEecCC
Confidence 3456788999999999887531 1556899999999999999
Q ss_pred ccCccccch--hhHhhccCCcEEE
Q 003996 666 DKLKYIFSA--STIQSLEQLQHLE 687 (780)
Q Consensus 666 ~~l~~l~~~--~~l~~L~~L~~L~ 687 (780)
. ++.+|+. .....+|+|+.|+
T Consensus 544 ~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 544 S-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-CCCCccHHHHHHHHCcccCccC
Confidence 7 7666532 1344578888875
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.31 E-value=5.4e-08 Score=111.73 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=102.9
Q ss_pred hccceEEEeecCcccc--cCC-CCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCC---------CcCc--c
Q 003996 504 LKKCYAISLLNSSIHE--VSE-EFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRI---------EFGQ--L 569 (780)
Q Consensus 504 ~~~~r~lsl~~~~~~~--~~~-~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~---------~~~~--L 569 (780)
..+++++.+..+.+.. +.. ...+++|++|.+.++. . ......+...+++|+.|+|+++ .++. +
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~--~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-E--DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG-H--HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc-C--HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 3578888888776532 111 1367888888888662 1 1222334456888888888442 2222 1
Q ss_pred cccccCCChhHHHh---hhcccCCCCCCCccCCHHHHhcccccccccccccccccc-cccccccccccc--c----cccc
Q 003996 570 RSLTLGKLPKVTRF---CREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEK-VVLPNLEALELN--A----INAD 639 (780)
Q Consensus 570 ~~L~i~~L~~L~~L---~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~--~----~~l~ 639 (780)
..+ ..++++|++| |..+.. .....+ ..+++|+.|++. + ++++
T Consensus 365 ~~l-~~~~~~L~~L~~~~~~l~~---------------------------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 365 VSV-SMGCPKLESVLYFCRQMTN---------------------------AALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp HHH-HHHCTTCCEEEEEESCCCH---------------------------HHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred HHH-HHhchhHHHHHHhcCCcCH---------------------------HHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 110 0123344433 111000 000111 246777777777 2 3333
Q ss_pred ccccccCCCCccccccCccEEeeccCccCccccchhhHhh-ccCCcEEEEecCchhHHhhccCcccccccccccCcccEE
Q 003996 640 EIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQS-LEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTL 718 (780)
Q Consensus 640 ~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~-L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L 718 (780)
..+....++..+..+++|+.|+|++ ++... .+..+.. +++|+.|++++|.-...... .-...+|+|++|
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~-------~l~~~~~~L~~L 486 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK-VFEYIGTYAKKMEMLSVAFAGDSDLGMH-------HVLSGCDSLRKL 486 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS--SCCHH-HHHHHHHHCTTCCEEEEESCCSSHHHHH-------HHHHHCTTCCEE
T ss_pred CCchhhHHHHHHhhCCCccEEeecC--cccHH-HHHHHHHhchhccEeeccCCCCcHHHHH-------HHHhcCCCcCEE
Confidence 2211111222245567777777765 34432 2233433 77777777776652111111 011347778888
Q ss_pred eccCCCCccccCCCCCccCCcccceeecccCCC
Q 003996 719 KLDGLPELRCLYPGMHTSEWPALKNLVACNCDK 751 (780)
Q Consensus 719 ~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 751 (780)
+|++|+. ...........+|+|+.|++++|+.
T Consensus 487 ~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 487 EIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 8777764 3221111123467777777777764
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.30 E-value=1.4e-06 Score=82.64 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=59.2
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccC
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 701 (780)
+..+++|++|++++|.++.+.. ..+..+++|+.|+|+++. ++.++ ...+..+++|+.|+++++ .++.++.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-- 117 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPD-----GVFDKLTKLTILYLHENK-LQSLP-NGVFDKLTQLKELALDTN-QLKSVPD-- 117 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT--
T ss_pred hcCcccccEEECCCCcceEeCh-----hHccCCCccCEEECCCCC-ccccC-HHHhhCCcccCEEECcCC-cceEeCH--
Confidence 4566788888888887764322 235677888888888875 66664 124567888888888765 4554443
Q ss_pred cccccccccccCcccEEeccCCC
Q 003996 702 RTDQVTAYFVFPRVTTLKLDGLP 724 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l~~~~ 724 (780)
..+..+++|++|++.+++
T Consensus 118 -----~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 118 -----GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -----TTTTTCTTCCEEECCSSC
T ss_pred -----HHhcCCcccCEEEecCCC
Confidence 123567788888887764
No 157
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=9.3e-07 Score=94.09 Aligned_cols=197 Identities=14% Similarity=0.168 Sum_probs=111.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCC-CEEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLF-DRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|+++.++.+..++.....+.+.|+|++|+||||+|+.+++.......+ ..++.++.+.......+. +...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHH
Confidence 33456789999999999999886655558999999999999999999875421001 123334444333333222 1111
Q ss_pred HhC-CCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChH-HHhh-cCCCce
Q 003996 230 KLG-LELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDIN-VLLS-MGSKDN 304 (780)
Q Consensus 230 ~l~-~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~~-~~~~~~ 304 (780)
.+. ......... ........++-+|++|++.... ....+...+.......++|++|.... +... ......
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 110 000000000 0000111345799999986542 12222211211223567777775432 1111 111237
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 003996 305 FLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVA 354 (780)
Q Consensus 305 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 354 (780)
+.+.+++.++....+...+...... --.+..+.|++.++|.|..+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999999998876422111 124577899999999998755443
No 158
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.21 E-value=1.9e-07 Score=99.89 Aligned_cols=204 Identities=13% Similarity=0.055 Sum_probs=112.0
Q ss_pred CCCccEEEeecCCCCCCcccch----HHHhcCC-cceEEEecCCCcCcccccccCCC-----hhHHHh---hhccc-CCC
Q 003996 526 CPQLEFLYIDPQITFSEVNIPD----NFFKGMK-KLRVVDLTRIEFGQLRSLTLGKL-----PKVTRF---CREVK-TPS 591 (780)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~i~~----~~~~~l~-~LrvLdL~~~~~~~L~~L~i~~L-----~~L~~L---~~~l~-~P~ 591 (780)
.++|+.|.+.++... ..+. ..|.+++ +|++|+|++|.+.....-.++.+ ++|++| .+.+. .+.
T Consensus 21 ~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGG---GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCC---hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 456999999988753 4554 5678888 89999999998876221112222 455555 11111 100
Q ss_pred CCCCccCCHHHHhccc-cccc---cc-cc------ccccccccc-cccccccccccccccccccccCCCCcccccc-Ccc
Q 003996 592 TSPNRQESQEELTASS-DEIS---SD-TS------TLLFNEKVV-LPNLEALELNAINADEIWHYNQLPGMVPCFQ-SLT 658 (780)
Q Consensus 592 ~~l~~~~~l~~L~~~~-~~~~---~~-~~------~~~~~~~~~-l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~-~L~ 658 (780)
. .+-+.+... +.++ .. +. ..+...+.. .++|++|+|++|.+...... .++..+..++ +|+
T Consensus 98 ~------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 98 D------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD-ELIQILAAIPANVN 170 (362)
T ss_dssp H------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH-HHHHHHHTSCTTCC
T ss_pred H------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH-HHHHHHhcCCcccc
Confidence 0 001111111 1111 10 00 001111223 25888888888877642211 2333344454 899
Q ss_pred EEeeccCccCccccch---hhHhhc-cCCcEEEEecCchhHH-----hhccCcccccccccc-cCcccEEeccCCCCccc
Q 003996 659 RLIVWGCDKLKYIFSA---STIQSL-EQLQHLEIRLCKSLQE-----IISEDRTDQVTAYFV-FPRVTTLKLDGLPELRC 728 (780)
Q Consensus 659 ~L~L~~c~~l~~l~~~---~~l~~L-~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~~~~-fp~L~~L~l~~~~~L~~ 728 (780)
+|+|++|. +...... ..+..+ ++|+.|++++|. +.. ++. .+.. .++|++|+|+++. +..
T Consensus 171 ~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~--------~l~~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 171 SLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY--------IFSSIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp EEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH--------HHHHSCTTCCEEECCSSC-CCC
T ss_pred EeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH--------HHhcCCCCceEEECcCCC-CCc
Confidence 99999986 6554311 123345 489999998765 433 221 2223 3589999999873 554
Q ss_pred cCC---CCCccCCcccceeecccCC
Q 003996 729 LYP---GMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 729 ~~~---~~~~~~~p~L~~L~i~~C~ 750 (780)
... ......+++|+.|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 421 0112457889999999987
No 159
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=3.2e-06 Score=90.01 Aligned_cols=198 Identities=11% Similarity=0.071 Sum_probs=106.5
Q ss_pred CCcccccchHHHHHHHHHHh-hcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCE------------------
Q 003996 152 KGYEAFESRVSTLKSIQNAL-TDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDR------------------ 208 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~------------------ 208 (780)
.....++|++...+.+.+++ ..+..+.+.|+|+.|+||||+|+.+++....... ++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 34567889999999999988 6554444999999999999999999986421110 110
Q ss_pred --EEEEEeCCCC-CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccCCCCCCCCCC
Q 003996 209 --VVFSEVSQTP-DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--LDTVGIPFGNDHEG 283 (780)
Q Consensus 209 --~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g 283 (780)
.+.+..+... ......++++..+.....-... . .+ ..+. .++-++|+|++..... .+.+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1111111100 0001122333322211100000 0 00 0011 2567999999976421 11221111111235
Q ss_pred cEEEEEeCChH-HHh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHHhCCChHHHHHHHHH
Q 003996 284 CRLLLTARDIN-VLL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKF-KSTAINVAQACGGLPIALTTVARA 356 (780)
Q Consensus 284 s~IlvTTR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l-~~~~~~I~~~c~GlPLai~~~~~~ 356 (780)
+.+|++|.... +.. .......+.+.+++.++..+.+.+.+...... -- .+.+..|++.++|.+..+..+...
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLLMLES 239 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67777776532 222 12233678999999999999998876421110 01 246778999999988766554443
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.20 E-value=2.5e-05 Score=82.95 Aligned_cols=182 Identities=10% Similarity=0.076 Sum_probs=104.9
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNALT------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.+..++.|.+.+. ....+.+.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc-
Confidence 44568899999998888764 134567899999999999999999987632 234454432111
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCCC---C-CCCCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIPF---G-NDHEG 283 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~-~~~~g 283 (780)
.... ........+.......++.+|+||+++.... ...+...+ . ....+
T Consensus 156 -------------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -------------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0111 1112233334444434679999999843210 11111111 0 11234
Q ss_pred cEEEEEeCChHHH-h--hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHH
Q 003996 284 CRLLLTARDINVL-L--SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTVAR 355 (780)
Q Consensus 284 s~IlvTTR~~~v~-~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 355 (780)
..||.||...... . .-.....+.+...+.++..+++...+...... -..+....|++.+.| .+-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566677653211 1 11223467888999999999988776432111 113467788899988 5556666554
No 161
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.20 E-value=1.1e-06 Score=100.72 Aligned_cols=122 Identities=20% Similarity=0.196 Sum_probs=73.6
Q ss_pred cccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCc----------
Q 003996 623 VVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCK---------- 692 (780)
Q Consensus 623 ~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~---------- 692 (780)
..+++|++|++++++ ..+.. ..++..+..+++|++|+|++|..+..++ ..+..+++|+.|.+..|.
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSF-SALERLVTRCPNLKSLKLNRAVPLEKLA--TLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCH-HHHHHHHHHCTTCCEEECCTTSCHHHHH--HHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred hcCCcCcEEEecccC-CcCCH-HHHHHHHHhCCCCcEEecCCCCcHHHHH--HHHhcCCcceEcccccccCccchhhHHH
Confidence 357799999998865 11111 1122223456899999999997676654 567789999999876553
Q ss_pred ---------hhHHhhcc-Cccc-cc-ccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccC
Q 003996 693 ---------SLQEIISE-DRTD-QV-TAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNC 749 (780)
Q Consensus 693 ---------~l~~l~~~-~~~~-~~-~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 749 (780)
.++.+... .... .. .....+++|++|+|++|. +..-........+|+|++|.+.+|
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 22222000 0000 00 112257899999999987 543210111246899999998764
No 162
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=9.2e-06 Score=88.73 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=113.5
Q ss_pred ccccc-ch--HHHHHHHHHHhhcCC-eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 154 YEAFE-SR--VSTLKSIQNALTDAN-VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 154 ~~~~~-gR--~~~~~~l~~~L~~~~-~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
...|+ |. ......+.......+ ...+.|+|++|+||||||+.+++.......-..+++++.. .+..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 34555 53 333444454444433 6788999999999999999999987543111234555443 23344444
Q ss_pred HhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---c-cccCCCCCC-CCCCcEEEEEeCCh---------HH
Q 003996 230 KLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD---L-DTVGIPFGN-DHEGCRLLLTARDI---------NV 295 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~IlvTTR~~---------~v 295 (780)
.+.... ...+...+.. ++-+|++||++.... . +.+...+.. ...|..||+||.+. .+
T Consensus 178 ~~~~~~--------~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEGK--------LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTTC--------HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHccc--------HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 332210 1223333331 467999999965432 1 112111100 13466788888762 22
Q ss_pred HhhcCCCceEecCCCCHHHHHHHHHHHcC--CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHh------cC--CHHHH
Q 003996 296 LLSMGSKDNFLIGNLNEEEAWRLFKIMNG--DDVENCKFKSTAINVAQACGGLPIALTTVARALR------NK--SLHEW 365 (780)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~------~~--~~~~w 365 (780)
...+.....+.+++++.++..+++.+.+. +..-++ ++...|++.++|.+..+..+...+. +. +.+.+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 22233345788999999999999988764 111122 3567888999998876554433221 22 55666
Q ss_pred HHHHHH
Q 003996 366 KNALRE 371 (780)
Q Consensus 366 ~~~l~~ 371 (780)
+.++..
T Consensus 326 ~~~l~~ 331 (440)
T 2z4s_A 326 ILLLKD 331 (440)
T ss_dssp HHHTST
T ss_pred HHHHHH
Confidence 555544
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=4.2e-06 Score=93.64 Aligned_cols=190 Identities=11% Similarity=0.048 Sum_probs=107.4
Q ss_pred CCCcccccchHHHHHHHHHHhhc-----------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE
Q 003996 151 NKGYEAFESRVSTLKSIQNALTD-----------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE 213 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (780)
|.....++|++..++.+.+|+.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44566799999999999999864 1347899999999999999999998873 2 244455
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH-HhcCCeEEEEEeCCCCccC-----ccccCCCCCCCCCCcEEE
Q 003996 214 VSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYER-LKNENKILVILDNIWKHLD-----LDTVGIPFGNDHEGCRLL 287 (780)
Q Consensus 214 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~Il 287 (780)
.+...... +....+........-.. ......+. ....++.+|++|+++.... +..+...+ .. .+..||
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l-~~-~~~~iI 183 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC-RK-TSTPLI 183 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH-HH-CSSCEE
T ss_pred CCCcchHH-HHHHHHHHHhccccHHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH-Hh-cCCCEE
Confidence 55444433 22222221111000000 00000000 0124678999999965421 11111111 11 233466
Q ss_pred EEeCChH---HHhhcCCCceEecCCCCHHHHHHHHHHHcCC--CCCCcchHHHHHHHHHHhCCCh-HHHHHHH
Q 003996 288 LTARDIN---VLLSMGSKDNFLIGNLNEEEAWRLFKIMNGD--DVENCKFKSTAINVAQACGGLP-IALTTVA 354 (780)
Q Consensus 288 vTTR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~ 354 (780)
+++.... +.........+.+.+++.++..+.+...+.. ...++ +....|++.++|.+ .++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 6555422 2222223447899999999999998876641 11122 35678899999955 4455443
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.18 E-value=5.7e-06 Score=78.03 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=73.2
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+.+.+.++.+..+|... .++|+.|.+.++.. ..+++..|.++++|++|+|++|.+..++.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---------------- 74 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQI---TKLEPGVFDHLVNLQQLYFNSNKLTAIPT---------------- 74 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCc---cccCHHHhcCCcCCCEEECCCCCCCccCh----------------
Confidence 45666667676666543 37888888887776 35656667888888888888887766543
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
..+..+++|++|+|++|.++.++. ..+..+++|+.|+|++++
T Consensus 75 --------------------------------~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~l~~L~~L~L~~N~- 116 (174)
T 2r9u_A 75 --------------------------------GVFDKLTQLTQLDLNDNHLKSIPR-----GAFDNLKSLTHIYLYNNP- 116 (174)
T ss_dssp --------------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSC-
T ss_pred --------------------------------hHhCCcchhhEEECCCCccceeCH-----HHhccccCCCEEEeCCCC-
Confidence 123567788888888888764322 236778888888888876
Q ss_pred Cccc
Q 003996 668 LKYI 671 (780)
Q Consensus 668 l~~l 671 (780)
+...
T Consensus 117 ~~c~ 120 (174)
T 2r9u_A 117 WDCE 120 (174)
T ss_dssp BCTT
T ss_pred cccc
Confidence 4433
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.18 E-value=3e-05 Score=81.82 Aligned_cols=175 Identities=13% Similarity=0.132 Sum_probs=102.9
Q ss_pred CcccccchHHHHHHHHHHhhc-----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTD-----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
....++|++..++.+..++.. .....+.|+|++|+|||++|+.+++..... .+.++.+.......+ ..+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~-~~~ 100 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDL-AAI 100 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHH-HHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHH-HHH
Confidence 456789999999998888762 344678999999999999999998875422 233333322211111 111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------ccccCC-----------CCCCCCCCcEEE
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD---------LDTVGI-----------PFGNDHEGCRLL 287 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~-----------~l~~~~~gs~Il 287 (780)
+. . ..+..+|++|++..... ++.-.. ......++..+|
T Consensus 101 ~~--------------------~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 101 LT--------------------N--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp HH--------------------T--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred HH--------------------h--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11 1 12457888888865411 010000 000011134566
Q ss_pred EEeCChHHHh--hc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 003996 288 LTARDINVLL--SM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVARA 356 (780)
Q Consensus 288 vTTR~~~v~~--~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 356 (780)
.+|....... .. .....+.+.+++.++...++.+.+..... .--.+....|++.+.|.|-.+..+...
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6666532211 11 12357999999999999999887652211 112456778888999999666554443
No 166
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.15 E-value=2.6e-05 Score=81.64 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=107.3
Q ss_pred CCcccccchHHHHHHHHHHhh------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 152 KGYEAFESRVSTLKSIQNALT------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
.....++|.+..++.|.+++. ....+-+.++|++|+|||++|+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 345678999999999988773 1124578999999999999999999876432 2333221
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccC---CCCCCCCCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVG---IPFGNDHEG 283 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~l~~~~~g 283 (780)
++.. .... ........+.......++.+|++|+++.... ...+. ..+.....+
T Consensus 86 --~l~~--------~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLVS--------KWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHHT--------TTGG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHhh--------cccc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1110 1111 1223344455555555779999999964311 11111 111122345
Q ss_pred cEEEEEeCChHHHh---hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHH
Q 003996 284 CRLLLTARDINVLL---SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTVAR 355 (780)
Q Consensus 284 s~IlvTTR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 355 (780)
..||.||....... .-.....+.+...+.++-.+++...+......- -......|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56666776533211 012234678889999999999999876432211 12456688888887 4545554443
No 167
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=4.8e-06 Score=87.61 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=36.7
Q ss_pred CCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHH
Q 003996 526 CPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTR 582 (780)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~ 582 (780)
|++|++|.+.. .. ..|++..|.++++|+.|+|+++.+..+..-.+..+.++.+
T Consensus 100 ~~~L~~l~L~~-~i---~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~ 152 (329)
T 3sb4_A 100 KQTLEKVILSE-KI---KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF 152 (329)
T ss_dssp CTTCCC-CBCT-TC---CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE
T ss_pred cCCCcEEECCc-cc---cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE
Confidence 88888888876 33 4688888899999999999988776654433444444433
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.14 E-value=6.3e-06 Score=86.50 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=102.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++.... .++.++.+.. .... +++++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~-i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDF-VRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHH-HHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHH-HHHHHH
Confidence 34567789999999999999986544 56778888999999999999987642 2455554432 2222 222111
Q ss_pred HhCCCCCchhHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---CccccCCCCCCCCCCcEEEEEeCChHHH-h-hcCCCc
Q 003996 230 KLGLELSDEAEYRRASRLYERL-KNENKILVILDNIWKHL---DLDTVGIPFGNDHEGCRLLLTARDINVL-L-SMGSKD 303 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~IlvTTR~~~v~-~-~~~~~~ 303 (780)
.. .... ..+++-+|++||++... ..+.+...+.....+.++|+||....-. . ......
T Consensus 95 ~~----------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 95 NF----------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HH----------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HH----------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 11 0000 01267899999997653 1122211111112356788887754311 1 001124
Q ss_pred eEecCCCCHHHHHHHHHH-------HcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 304 NFLIGNLNEEEAWRLFKI-------MNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 304 ~~~l~~L~~~e~~~Lf~~-------~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
.+.+++++.++-.+++.. .+......-.-.+....|++.++|.+..+.....
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELD 217 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 789999998885443322 2221111101125677888889887765443333
No 169
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.12 E-value=8.2e-06 Score=77.68 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=43.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
....++||+.+++.+.+++.....+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45578999999999999998766677899999999999999999988643
No 170
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.11 E-value=6.8e-05 Score=78.25 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=104.3
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNALT------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....+.|.+..++.|.+.+. ....+.+.++|++|+|||+||+.+++..... ..+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh-
Confidence 44567888888888777653 1223678899999999999999999986211 223344332111
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccC---CCCCCCCCCc
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVG---IPFGNDHEGC 284 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~l~~~~~gs 284 (780)
...... ......+.......++.+|++|+++.... ...+. ..+.....+.
T Consensus 85 -------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 001111 12233344444444689999999975411 00010 0111122345
Q ss_pred EEEEEeCChHHHh---hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCC-hHHHHHHHH
Q 003996 285 RLLLTARDINVLL---SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGL-PIALTTVAR 355 (780)
Q Consensus 285 ~IlvTTR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~ 355 (780)
.||.||....... .-.....+.++..+.++-.+++..++......- -......|++.+.|. +-.|..+..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666665432111 112335778899999999999988775332211 134567888888886 444555544
No 171
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.11 E-value=6.3e-06 Score=77.43 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=71.6
Q ss_pred eEEEeecCcccccCCCCCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 508 YAISLLNSSIHEVSEEFECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 508 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+.+.+.++.+..+|... .++++.|.+.++... .+++..|.++++|++|+|++|.+..++.
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---------------- 71 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQIT---KLEPGVFDRLTQLTRLDLDNNQLTVLPA---------------- 71 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCT----------------
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCC---ccChhhhcCcccCCEEECCCCCcCccCh----------------
Confidence 46677777777766543 478888888877763 5656667888888888888887765543
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCD 666 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~ 666 (780)
..+..+++|++|+|++|.++.+.. ..+..+++|+.|+|++++
T Consensus 72 --------------------------------~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 --------------------------------GVFDKLTQLTQLSLNDNQLKSIPR-----GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp --------------------------------TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred --------------------------------hhccCCCCCCEEECCCCccCEeCH-----HHhcCCCCCCEEEeCCCC
Confidence 123567788888888887764432 246677888888888875
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=3.5e-06 Score=78.46 Aligned_cols=88 Identities=7% Similarity=0.042 Sum_probs=38.6
Q ss_pred CccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccc----cCcccEEeccCCCCccccCC
Q 003996 656 SLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFV----FPRVTTLKLDGLPELRCLYP 731 (780)
Q Consensus 656 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~----fp~L~~L~l~~~~~L~~~~~ 731 (780)
+|+.|++++|. ++.. -+..+..+++|+.|+|++|..+++-.. ..+.. .++|++|+|++|++++.-.-
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45555555554 3332 223344555555555555554433211 01111 23455555555554443210
Q ss_pred CCCccCCcccceeecccCCCCC
Q 003996 732 GMHTSEWPALKNLVACNCDKIT 753 (780)
Q Consensus 732 ~~~~~~~p~L~~L~i~~C~~L~ 753 (780)
. ....+|+|++|++++||+++
T Consensus 133 ~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 I-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp H-HGGGCTTCCEEEEESCTTCC
T ss_pred H-HHhcCCCCCEEECCCCCCCC
Confidence 0 11234555555555555554
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.6e-06 Score=80.69 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=69.0
Q ss_pred ccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhc----cCCcEEEEecCchhHHhhccC
Q 003996 626 PNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSL----EQLQHLEIRLCKSLQEIISED 701 (780)
Q Consensus 626 ~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L----~~L~~L~l~~c~~l~~l~~~~ 701 (780)
.+|++|+++++.++.. | +. .+..+++|++|+|++|.+++.- .+..+..+ ++|++|+|++|..+++-..
T Consensus 61 ~~L~~LDLs~~~Itd~--G--L~-~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-- 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI--G--FD-HMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGI-- 132 (176)
T ss_dssp CCEEEEEEESCCCCGG--G--GG-GGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--
T ss_pred ceEeEEeCcCCCccHH--H--HH-HhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHH--
Confidence 3689999999776532 1 11 1567899999999999988764 34455554 4799999999998876543
Q ss_pred cccccccccccCcccEEeccCCCCcccc
Q 003996 702 RTDQVTAYFVFPRVTTLKLDGLPELRCL 729 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~ 729 (780)
..+..+|+|++|+|++|+.++..
T Consensus 133 -----~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 -----IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -----HHGGGCTTCCEEEEESCTTCCCH
T ss_pred -----HHHhcCCCCCEEECCCCCCCCch
Confidence 24567999999999999988764
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.08 E-value=1.2e-05 Score=83.58 Aligned_cols=153 Identities=10% Similarity=0.098 Sum_probs=83.9
Q ss_pred cccchHHHHHHHHHHhh---------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 156 AFESRVSTLKSIQNALT---------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46787777777765543 234457899999999999999999988755322221122333210
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----------CccccCCCCCCCCCCcEEEEE
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL-----------DLDTVGIPFGNDHEGCRLLLT 289 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~gs~IlvT 289 (780)
.+.......... ....+.... +.-+|++|+++... ....+...+.....+..||+|
T Consensus 109 ---------~l~~~~~g~~~~-~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIGHTAP-KTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTTCHHH-HHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------HhhhhcccccHH-HHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 000111111111 112222222 34599999997331 112222222223345667777
Q ss_pred eCChHHHhh--c------CCCceEecCCCCHHHHHHHHHHHcC
Q 003996 290 ARDINVLLS--M------GSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 290 TR~~~v~~~--~------~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
|........ . .....+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 764322110 0 1125788999999999999988764
No 175
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=0.00016 Score=74.50 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=102.3
Q ss_pred CcccccchHHHHHHHHHHhhc------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNALTD------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh-
Confidence 455789999999998887631 23467899999999999999999987642 223344433211
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCc---------c----ccC---CCCCC--CCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLDL---------D----TVG---IPFGN--DHE 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~----~l~---~~l~~--~~~ 282 (780)
..... .......+.......++.+|++|++.....- . .+. ..++. .+.
T Consensus 93 -------------~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -------------KYVGD-GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -------------SSCSC-HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -------------cccch-HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00111 1122233333333346789999999643110 0 000 01111 123
Q ss_pred CcEEEEEeCChH-----HHhhcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 003996 283 GCRLLLTARDIN-----VLLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTVA 354 (780)
Q Consensus 283 gs~IlvTTR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 354 (780)
+..||.||.... +... ....+.+...+.++...++...+...... --.+....|++.+.|.+- ++..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666776542 2222 23467778888888888887766422111 113456788889988775 554444
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2e-05 Score=83.14 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=102.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCC-EEEEEEeCCCCCHHHHHHHHHH
Q 003996 151 NKGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFD-RVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 151 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
|.....++|.+..++.|..++..+..+.+.++|++|+||||+|+.+++...... +. .+.-++.+.......+. +++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHH-HHHH
Confidence 334566789999999999888877665589999999999999999998864321 11 12233333322222221 1111
Q ss_pred HhCCCCCchhHHHHHHHHHHHH--hcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCChH-HHh-hcCCCc
Q 003996 230 KLGLELSDEAEYRRASRLYERL--KNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDIN-VLL-SMGSKD 303 (780)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~~-v~~-~~~~~~ 303 (780)
.+ .+.. ..+++-++|+|+++... ..+.+...+......+++|++|.... +.. ......
T Consensus 99 ~~----------------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 99 DF----------------ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HH----------------HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HH----------------HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11 0000 01246789999986431 11112111111123556777765432 111 112234
Q ss_pred eEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHH
Q 003996 304 NFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIA 349 (780)
Q Consensus 304 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 349 (780)
.+.+.+++.++..+.+.+.+...... --.+..+.|++.++|.+.-
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 78899999999999888766321111 1134667888888887764
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.06 E-value=4.3e-05 Score=80.28 Aligned_cols=170 Identities=11% Similarity=0.073 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhhcCCe-EEEEEEeCCCChHHHHHHHHHHHhhccC--------------------CCCEEEEEEeC---
Q 003996 160 RVSTLKSIQNALTDANV-SIIGVYGMGGIGKTTLVKEFVRQASENK--------------------LFDRVVFSEVS--- 215 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~-~vi~I~G~~GvGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs--- 215 (780)
.++..+.+.+.+..+.. ..+.++|+.|+|||++|+.+.+...... |++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 35667777777776554 5799999999999999999998764321 233 2333332
Q ss_pred CCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCCh
Q 003996 216 QTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDI 293 (780)
Q Consensus 216 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~ 293 (780)
....+.++ +++.+.+..... .+++-++|+|+++... ..+.+...+-....++.+|++|.+.
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~~----------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHAR----------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCCT----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCCHHHH-HHHHHHHhhccc----------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 12222222 233333321110 1357899999997542 2222222222223466777777664
Q ss_pred H-HHh-hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 003996 294 N-VLL-SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTV 353 (780)
Q Consensus 294 ~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 353 (780)
. +.. .......+.+.+++.++..+.+.+... . -.+.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 222 223345799999999999999988761 1 1345678999999999766543
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.04 E-value=6.4e-05 Score=80.85 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=103.0
Q ss_pred CCcccccchHHHHHHHHHHhh------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 152 KGYEAFESRVSTLKSIQNALT------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
.....++|.+..++.|.+++. ....+.+.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 345678999999999988873 123467899999999999999999887542 233333332211
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCC---CCC-CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIP---FGN-DHE 282 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~-~~~ 282 (780)
.. .... ......+.......++.+|+||+++.... ...+... +.. ...
T Consensus 187 --~~------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 --KY------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --cc------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 0000 11233344444444568999999964310 0011000 000 122
Q ss_pred CcEEEEEeCChHHHh--hc-CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 003996 283 GCRLLLTARDINVLL--SM-GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTVAR 355 (780)
Q Consensus 283 gs~IlvTTR~~~v~~--~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 355 (780)
...||.||....... .. .....+.+...+.++..+++...+...... -..+....|++.+.|..- ++..+..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345565665432211 11 223468889999999999998877532221 123466788888888544 5555443
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.02 E-value=0.00018 Score=78.68 Aligned_cols=183 Identities=14% Similarity=0.192 Sum_probs=103.5
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNALT------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++..... -++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~------~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS------TFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS------EEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC------CEEEEeHHH--
Confidence 45678899988888887763 1234678999999999999999999976211 123333211
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCCCCC---CCCCc
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIPFGN---DHEGC 284 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~gs 284 (780)
+... ..+... .....+.......++.+|++|+++.... ...+...+.. ...+.
T Consensus 204 --l~~~---~~g~~~------~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --LVSK---WLGESE------KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------CC------CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HHhh---hcchHH------HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1110 011110 0122333333344679999999975410 0111111211 23455
Q ss_pred EEEEEeCChHHHh---hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHH
Q 003996 285 RLLLTARDINVLL---SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTVAR 355 (780)
Q Consensus 285 ~IlvTTR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 355 (780)
.||.||....... .-.....+.+...+.++-..+|..++....... -......|++.+.| .+-.|..+..
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666776543211 112234677888899999999988875432111 12456788889988 4545555443
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.02 E-value=3.2e-05 Score=82.60 Aligned_cols=197 Identities=7% Similarity=0.058 Sum_probs=102.7
Q ss_pred cccccchHHHHHH---HHHHhhcCCe--EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe----CCCCCHHHHH
Q 003996 154 YEAFESRVSTLKS---IQNALTDANV--SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV----SQTPDIKKIQ 224 (780)
Q Consensus 154 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~~i~ 224 (780)
...++|++...+. +.+.+..... +.+.|+|++|+|||++|+.+++.......| +.+.. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5578999888666 4444444433 589999999999999999999987643122 22221 1223333344
Q ss_pred HHHHHHh-CCC----------------------------CC-----chhHHHHHHHHHHH-HhcCC----eEEEEEeCCC
Q 003996 225 GEIAEKL-GLE----------------------------LS-----DEAEYRRASRLYER-LKNEN----KILVILDNIW 265 (780)
Q Consensus 225 ~~i~~~l-~~~----------------------------~~-----~~~~~~~~~~l~~~-l~~~k----~~LlVlDdv~ 265 (780)
.+..... +.. .. .............. ...++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333321 000 00 01111112222221 11223 3599999997
Q ss_pred Ccc--CccccCCCCCCCCCCcEEEEEeCC-------------hHH-HhhcCCCceEecCCCCHHHHHHHHHHHcCCCCCC
Q 003996 266 KHL--DLDTVGIPFGNDHEGCRLLLTARD-------------INV-LLSMGSKDNFLIGNLNEEEAWRLFKIMNGDDVEN 329 (780)
Q Consensus 266 ~~~--~~~~l~~~l~~~~~gs~IlvTTR~-------------~~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 329 (780)
... ....+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+.....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 542 111121112111112 34444431 001 011122345789999999999999987652111
Q ss_pred cchHHHHHHHHHHhC-CChHHHHHHHH
Q 003996 330 CKFKSTAINVAQACG-GLPIALTTVAR 355 (780)
Q Consensus 330 ~~l~~~~~~I~~~c~-GlPLai~~~~~ 355 (780)
.--.+....|++.+. |.|..+..+..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 112356778888887 77766554443
No 181
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.01 E-value=2.4e-07 Score=89.74 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=67.2
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE 700 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~ 700 (780)
.+..+++|++|++++|.++. +| .+..+++|+.|++++|. +..+| ..+..+++|+.|+++++ .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~------l~-~~~~l~~L~~L~l~~n~-l~~l~--~~~~~~~~L~~L~L~~N-~l~~l~-- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK------IS-SLSGMENLRILSLGRNL-IKKIE--NLDAVADTLEELWISYN-QIASLS-- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC------CC-CHHHHTTCCEEEEEEEE-ECSCS--SHHHHHHHCSEEEEEEE-ECCCHH--
T ss_pred HHhcCCCCCEEECCCCCCcc------cc-ccccCCCCCEEECCCCC-ccccc--chhhcCCcCCEEECcCC-cCCcCC--
Confidence 45567777777777777654 33 46677777777777775 66665 34556677777777754 344443
Q ss_pred CcccccccccccCcccEEeccCCCCccccCCCCCccCCcccceeecccCC
Q 003996 701 DRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPALKNLVACNCD 750 (780)
Q Consensus 701 ~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 750 (780)
.+..+++|++|+++++. +..++.......+++|+.|++.+|+
T Consensus 110 -------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 -------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 23456777777777652 4443211122456777777766654
No 182
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.00 E-value=6.4e-07 Score=99.17 Aligned_cols=117 Identities=16% Similarity=0.057 Sum_probs=65.6
Q ss_pred ccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhh-----ccCCcEEEEecCchhHH--
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQS-----LEQLQHLEIRLCKSLQE-- 696 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~-----L~~L~~L~l~~c~~l~~-- 696 (780)
.+++|++|++++|.+...... .+|..+..+++|++|+|++|. +.... ...+.. .++|+.|++++|.--..
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~-i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNE-LGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHH-HHHHHHHHCTTCCEEECTTCC-CHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred CCCCceEEECcCCCCCHHHHH-HHHHHHhhCCCcceEECCCCC-CchHH-HHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 356777777777766542111 133345566777888877774 44321 112222 25788888777652211
Q ss_pred --hhccCcccccccccccCcccEEeccCCCCccccCCCCC----ccCCcccceeecccCCCCC
Q 003996 697 --IISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMH----TSEWPALKNLVACNCDKIT 753 (780)
Q Consensus 697 --l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~----~~~~p~L~~L~i~~C~~L~ 753 (780)
++ ..+..+++|++|+++++ .+........ ....++|++|++++|. ++
T Consensus 331 ~~l~--------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~ 383 (461)
T 1z7x_W 331 SHFS--------SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VS 383 (461)
T ss_dssp HHHH--------HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CC
T ss_pred HHHH--------HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CC
Confidence 11 13345688899998887 3443310000 0125789999999985 55
No 183
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00023 Score=75.11 Aligned_cols=174 Identities=12% Similarity=0.144 Sum_probs=102.4
Q ss_pred CCcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 152 KGYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
.....+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.+..+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 345667788888887776553 1234678899999999999999999987643 2344433211
Q ss_pred CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCCC--CC
Q 003996 219 DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPFG--ND 280 (780)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 280 (780)
..+.+. ....+..++.......+++|++|+++.... ...+...+. ..
T Consensus 220 --------------sk~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 220 --------------QKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp --------------CSSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred --------------ccccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 111111 223344555555555789999999975411 000110110 12
Q ss_pred CCCcEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 281 HEGCRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 281 ~~gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
..+..||.||...+... .-.....+.++.-+.++-.++|+.+........+. -...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 33455677776543221 11335688899899999999998877643222211 1346777777754
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.99 E-value=9.5e-05 Score=78.29 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=103.4
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNALT------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 34568898888888887763 1123458899999999999999999987432 2233221
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCC---CCCCCCCc
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIP---FGNDHEGC 284 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~gs 284 (780)
++.. ...... ......+.......++.+|++|+++.... ...+... +.....+.
T Consensus 119 -~l~~--------~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DLVS--------KWMGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HHHS--------CC---C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HHhh--------hhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1111 000111 12233344444444689999999975321 1111111 11122355
Q ss_pred EEEEEeCChHHHh---hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHHHH
Q 003996 285 RLLLTARDINVLL---SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTVAR 355 (780)
Q Consensus 285 ~IlvTTR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 355 (780)
.||.||....... .-.....+.+...+.++-.+++..++......- -......|++.+.| .+-.|..+..
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666776542111 113345778899999999999998876432111 13456788899988 4545555443
No 185
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.98 E-value=2.9e-05 Score=85.48 Aligned_cols=150 Identities=12% Similarity=0.176 Sum_probs=85.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCC----C-EEEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLF----D-RVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F----~-~~~wv~vs~~~~~~~i~~~i 227 (780)
...+++||+++++.+...+......-+.|+|++|+|||++|+.+++........ + .++.++.+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 456799999999999999986656677899999999999999999986432100 1 122222220
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHh-------hcC
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLL-------SMG 300 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~-------~~~ 300 (780)
...| .. ......+...+...++.+|++| ...+....+...+ . ....++|.+|....... ...
T Consensus 247 -~~~g-~~-----e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L-~-~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 -KYRG-EF-----EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -cccc-hH-----HHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh-c-CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 0000 00 0112334444444467899999 2222222222222 2 12345555555433111 111
Q ss_pred CCceEecCCCCHHHHHHHHHHHcC
Q 003996 301 SKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 301 ~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
....+.+++.+.++..+++...+.
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 223688999999999999997664
No 186
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.96 E-value=2e-05 Score=93.70 Aligned_cols=158 Identities=12% Similarity=0.153 Sum_probs=88.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC-----CCEEEEEEeCCCCCHHHHHHH
Q 003996 152 KGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL-----FDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~ 226 (780)
.....++||++++..+++.+.......+.++|++|+||||+|+.+++....... -..+++++.+.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345678999999999999998766667889999999999999999998743210 11344444322110
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC-------ccc--cCCCCCCCCCCcEEEEEeCChHHH
Q 003996 227 IAEKLGLELSDEAEYRRASRLYERLKN-ENKILVILDNIWKHLD-------LDT--VGIPFGNDHEGCRLLLTARDINVL 296 (780)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~~--l~~~l~~~~~gs~IlvTTR~~~v~ 296 (780)
+..... ........+.+.+.. +++.+|++|++..... ++. +..++.. ..+..+|.+|......
T Consensus 240 -----g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 -----GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-RGELRLIGATTLDEYR 312 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-TTCCCEEEEECHHHHH
T ss_pred -----cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-CCCeEEEEecCchHHh
Confidence 000001 112233444444443 3679999999975420 111 1111111 1234466555543321
Q ss_pred -----h-hcCCCceEecCCCCHHHHHHHHHHHc
Q 003996 297 -----L-SMGSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 297 -----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
. .......+.+++++.++..+++....
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 11122358899999999999997543
No 187
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.95 E-value=1.3e-05 Score=75.67 Aligned_cols=64 Identities=23% Similarity=0.145 Sum_probs=42.2
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecC
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLC 691 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 691 (780)
.+..+++|++|+|++|.++.++.+ .+..+++|+.|+|+++. ++.+++ ..+..+++|+.|++++.
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~~i~~~-----~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLTAIPTG-----VFDKLTQLTQLDLNDNH-LKSIPR-GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS
T ss_pred HhcCCcCCCEEECCCCCCCccChh-----HhCCcchhhEEECCCCc-cceeCH-HHhccccCCCEEEeCCC
Confidence 345667777888888777644322 24667788888887775 666642 23667777777777654
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=4.5e-05 Score=79.89 Aligned_cols=168 Identities=15% Similarity=0.086 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhcC--CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchh
Q 003996 162 STLKSIQNALTDA--NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEA 239 (780)
Q Consensus 162 ~~~~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 239 (780)
.....+..+.... ....+.|+|++|+||||||+.+++..... -..+++++.. ++..++...+...
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC-----
Confidence 3444555555443 34678999999999999999999987543 1234555432 3333333332110
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccC---c-cccCCCCCC-CCCCcEEEEEeCChH---------HHhhcCCCceE
Q 003996 240 EYRRASRLYERLKNENKILVILDNIWKHLD---L-DTVGIPFGN-DHEGCRLLLTARDIN---------VLLSMGSKDNF 305 (780)
Q Consensus 240 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~IlvTTR~~~---------v~~~~~~~~~~ 305 (780)
....+...+. ++-+|++||+..... + +.+...+.. ...|..||+||.+.. +...+.....+
T Consensus 88 ---~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 88 ---TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp ---CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred ---cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 0122233333 357999999965432 1 112111100 123557888876421 22223333578
Q ss_pred ecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHH
Q 003996 306 LIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIAL 350 (780)
Q Consensus 306 ~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 350 (780)
.+++ +.++..+++...+..... .--.++...|++.+ |..-.+
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHH
Confidence 9999 999999999887642111 11135677888888 776543
No 189
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.90 E-value=1.7e-05 Score=74.53 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=39.6
Q ss_pred ccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEec
Q 003996 622 KVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRL 690 (780)
Q Consensus 622 ~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 690 (780)
+..+++|++|+|++|.++.+..+ .+..+++|+.|+|+++. ++.+++ ..+..+++|+.|++++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~-----~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAG-----VFDKLTQLTQLSLNDNQ-LKSIPR-GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS
T ss_pred hcCcccCCEEECCCCCcCccChh-----hccCCCCCCEEECCCCc-cCEeCH-HHhcCCCCCCEEEeCC
Confidence 44566777777777777644322 34667777777777775 666641 2456677777777765
No 190
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.0002 Score=76.91 Aligned_cols=171 Identities=16% Similarity=0.222 Sum_probs=99.7
Q ss_pred CcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....+.|-++.++.|.+.+. -...+-|.++|++|+|||+||+.+++..... .+.+..+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 35567788888777766553 1235778899999999999999999987643 23444433111
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCC--CCCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPF--GNDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~ 281 (780)
..... .......++.......+++|++|+++.... +..+...+ ....
T Consensus 254 --------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 --------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp --------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred --------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 11111 122344444544455789999999975311 00111111 0122
Q ss_pred CCcEEEEEeCChHHHh-h-cC---CCceEecCCCCHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHHhCCCh
Q 003996 282 EGCRLLLTARDINVLL-S-MG---SKDNFLIGNLNEEEAWRLFKIMNGDDV--ENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlP 347 (780)
.+..||.||...+... . .. -...+.++.-+.++-.++|+.++.... ...++ ..|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 3556777776554332 1 11 234677888888888888887765322 22233 46677777643
No 191
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00043 Score=74.15 Aligned_cols=172 Identities=12% Similarity=0.118 Sum_probs=99.6
Q ss_pred cccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 154 YEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
...+.|-++.+++|.+.+. -...+-|.++|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~-- 280 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV-- 280 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--
Confidence 4567788888887776543 1346778899999999999999999987643 2334433211
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCC--CCCCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPF--GNDHE 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~ 282 (780)
....+. .......++.......+++|++|+++.... ...+...+ .....
T Consensus 281 ------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 ------------QKYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111111 122344445554555789999999975411 00000001 01223
Q ss_pred CcEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 283 GCRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 283 gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
+..||.||...+... .-.....+.++..+.++-.++|+.++.......++. ...|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 445666765433221 112355788888899999999988776432222111 246777787753
No 192
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=2.7e-05 Score=81.80 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=60.1
Q ss_pred ccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCccc-EEeccCCCCccccCCC
Q 003996 654 FQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVT-TLKLDGLPELRCLYPG 732 (780)
Q Consensus 654 l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~-~L~l~~~~~L~~~~~~ 732 (780)
+++|+.|+|+++. ++.++ -..+..+++|+.|.+.+ .++.++. .....+++|+ .|.+.+ +++.++..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~--ni~~I~~-------~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPH--NLKTIGQ-------RVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCCC-cceec-HhhhhCCCCCCEEECCc--ccceehH-------HHhhCChhccEEEEEcc--cceEEchh
Confidence 5678888887764 66664 23566778888888864 2555543 2345667777 777766 56777432
Q ss_pred CCccCCcccceeecccCCCCCCcCCCCCCcCCCCCCccccc
Q 003996 733 MHTSEWPALKNLVACNCDKITLSQNDENDQFGVPAQQPLLS 773 (780)
Q Consensus 733 ~~~~~~p~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~l~~ 773 (780)
. ...+++|+.|.+.+. +++.++ ..-+..|++|..
T Consensus 292 a-F~~c~~L~~l~l~~n-~i~~I~-----~~aF~~~~~L~~ 325 (329)
T 3sb4_A 292 A-FMGCDNLRYVLATGD-KITTLG-----DELFGNGVPSKL 325 (329)
T ss_dssp T-TTTCTTEEEEEECSS-CCCEEC-----TTTTCTTCCCCE
T ss_pred h-hhCCccCCEEEeCCC-ccCccc-----hhhhcCCcchhh
Confidence 2 234667777765433 355555 223445555544
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00055 Score=72.52 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=99.4
Q ss_pred CCcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 152 KGYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
.....+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... | +.+..+.-
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l- 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSEL- 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGG-
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHh-
Confidence 345667788888777766543 1235678999999999999999999987643 2 33333221
Q ss_pred CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCC--CCC
Q 003996 219 DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPF--GND 280 (780)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~~~ 280 (780)
...+... .......++.......+++|++|+++.... +..+...+ ...
T Consensus 253 -------------~sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 253 -------------IQKYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -------------CCSSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -------------hhccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1111111 223344455555555789999999864311 00010000 012
Q ss_pred CCCcEEEEEeCChHHHh-hc----CCCceEecCCCCHHHHHHHHHHHcCCCCC--CcchHHHHHHHHHHhCCCh
Q 003996 281 HEGCRLLLTARDINVLL-SM----GSKDNFLIGNLNEEEAWRLFKIMNGDDVE--NCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 281 ~~gs~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~GlP 347 (780)
..+..||.||...+... .+ .....+.++.-+.++-.++|..++..... +.++ ..|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 23455677776554332 11 12346778888888888899887763322 2233 46667777643
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00012 Score=78.57 Aligned_cols=171 Identities=12% Similarity=0.149 Sum_probs=97.5
Q ss_pred CCcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC
Q 003996 152 KGYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP 218 (780)
Q Consensus 152 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 218 (780)
.....+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.+..+.-
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l- 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL- 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG-
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh-
Confidence 345678888888888877643 1235678899999999999999999987643 233443321
Q ss_pred CHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------C---------ccccCCCCC--CC
Q 003996 219 DIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL-------D---------LDTVGIPFG--ND 280 (780)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------~---------~~~l~~~l~--~~ 280 (780)
...+.+.+ ......++.......+++|++|+++... . ...+...+. ..
T Consensus 252 -------------~~~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 252 -------------VQMYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -------------CSSCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -------------hhcccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 11111111 2233344444444468999999985320 0 001111111 12
Q ss_pred CCCcEEEEEeCChHHHh-hc----CCCceEecCCCCHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHHhCCC
Q 003996 281 HEGCRLLLTARDINVLL-SM----GSKDNFLIGNLNEEEAWRLFKIMNGDDV--ENCKFKSTAINVAQACGGL 346 (780)
Q Consensus 281 ~~gs~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~Gl 346 (780)
..+..||.||...+... .+ .....+.++..+.++-.++|+.++.... ..-++ ..|++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 23445666776544322 11 1234678888888888888877654221 12223 4677777764
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.77 E-value=0.00026 Score=73.06 Aligned_cols=173 Identities=11% Similarity=0.156 Sum_probs=98.7
Q ss_pred CcccccchHHHHHHHHHHhhc-------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALTD-------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++..... .+ .++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i--~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FI--SIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EE--EEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EE--EEE----
Confidence 345688888888877776541 345678999999999999999999876421 22 222
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL------------D----LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 281 (780)
..++.... .+... .....+.+......+.+|++|+++... . ...+...+. ...
T Consensus 82 ~~~l~~~~---~g~~~------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMW---FGESE------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHH---HTTCT------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhh---cCchH------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 22232222 22111 112333444333467999999996420 0 011111110 122
Q ss_pred CCcEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCC--CcchHHHHHHHHHHhCCChHH
Q 003996 282 EGCRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVE--NCKFKSTAINVAQACGGLPIA 349 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~GlPLa 349 (780)
.+..||.||....... .. .....+.++..+.++-.+++...+..... ..++ ..+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 3556777776553221 11 12347889999999999999887753221 2222 3556667776654
No 196
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.001 Score=71.20 Aligned_cols=171 Identities=13% Similarity=0.153 Sum_probs=93.8
Q ss_pred CcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....+.|-++.++.|.+.+. -...+-+.++|++|+|||+||+.+++..... .+.+..+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 45667888888887776553 1235668899999999999999999987643 33444433111
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C--------ccccCCCCC--CCC
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--------D--------LDTVGIPFG--NDH 281 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~ 281 (780)
...+. ....+..++.......++++++|+++... . +..+...+. ...
T Consensus 245 --------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 --------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp --------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred --------------cccch-hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 11111 12234444554545578999999985320 0 001110010 123
Q ss_pred CCcEEEEEeCChHHHh--hc---CCCceEecCCCC-HHHHHHHHHHHcCCCC--CCcchHHHHHHHHHHhCCCh
Q 003996 282 EGCRLLLTARDINVLL--SM---GSKDNFLIGNLN-EEEAWRLFKIMNGDDV--ENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 282 ~gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~-~~e~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlP 347 (780)
.+..||.||...+... .. .....+.+..++ .++-..+|..++.... ...++ ..|++.+.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 3556777776543211 11 123457776564 4555566666554222 12233 46677777643
No 197
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.67 E-value=3.2e-05 Score=73.30 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhc---CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 003996 160 RVSTLKSIQNALTD---ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS 236 (780)
Q Consensus 160 R~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (780)
+...++.+.+++.+ .....+.|+|++|+||||||+.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 44555555555542 2357899999999999999999999875322222 2333 344444444433321111
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEEeCCCC--ccCcc--ccCCCCCC-CCCCcEEEEEeCC
Q 003996 237 DEAEYRRASRLYERLKNENKILVILDNIWK--HLDLD--TVGIPFGN-DHEGCRLLLTARD 292 (780)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~IlvTTR~ 292 (780)
. .+.+.+. ++-+|||||++. .+.|. .+...+.. ...|..||+||..
T Consensus 92 ~--------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 T--------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp S--------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred H--------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 2223333 356999999973 23332 11111100 1246678888873
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.63 E-value=0.00035 Score=82.12 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCEEEE-EEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDRVVF-SEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~i~~~i 227 (780)
....++||+.+++.+.+.|......-+.|+|++|+|||++|+.+++....... ....+| +..+...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------
Confidence 45678999999999999998766677889999999999999999987643211 233333 2211100
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C---ccccCCCCCCCCCCcEEEEEeCChHHH
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--------D---LDTVGIPFGNDHEGCRLLLTARDINVL 296 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~gs~IlvTTR~~~v~ 296 (780)
.+.... .........+.+.+...++.+|++|+++... . ...+...+ . ..+..+|.+|......
T Consensus 255 ---~~~~~~-g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 255 ---AGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---CCCCCS-SCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHH
T ss_pred ---cccccc-chHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHh
Confidence 001111 1122334445555555467999999997541 1 11122222 2 2345566666544322
Q ss_pred hhc-------CCCceEecCCCCHHHHHHHHHHHc
Q 003996 297 LSM-------GSKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 297 ~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
... .....+.+++.+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 112368899999999998887654
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=0.00023 Score=83.67 Aligned_cols=150 Identities=11% Similarity=0.172 Sum_probs=85.3
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCE-EEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDR-VVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~-~~wv~vs~~~~~~~i~~~i 227 (780)
....++||+++++.+...+......-+.++|++|+|||++|+.+++....... .+. .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 45679999999999999998666666889999999999999999998633210 011 111221
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHHh-------hcC
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVLL-------SMG 300 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~~-------~~~ 300 (780)
+....+. .......+.......++.+|++|. ..+....+...+ . ....++|.||....... ...
T Consensus 245 ----g~~~~G~-~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ----GTKYRGE-FEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ----cccccch-HHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 0000000 011223344444445678999992 222112222222 2 22455666665443111 011
Q ss_pred CCceEecCCCCHHHHHHHHHHHcC
Q 003996 301 SKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 301 ~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
....+.++..+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 124688999999999999987654
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=0.00013 Score=75.13 Aligned_cols=145 Identities=15% Similarity=0.075 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhc-c-CCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC
Q 003996 160 RVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASE-N-KLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELS 236 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~-~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~ 236 (780)
-++.++.|.+.+..+..+.+.++|++|+||||+|+.+.+.... . .+.+ ..++..+. ...+.++ +++.+.+.....
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~ 79 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE 79 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccc
Confidence 3455677777777666789999999999999999999886321 1 2333 34555443 3444333 334444432111
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCCCCCCCCCCcEEEEEeCCh-HHHhhcCCCceEecCCCCHH
Q 003996 237 DEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGIPFGNDHEGCRLLLTARDI-NVLLSMGSKDNFLIGNLNEE 313 (780)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IlvTTR~~-~v~~~~~~~~~~~l~~L~~~ 313 (780)
.+++-++|+|+++... ..+.+...+-.....+.+|++|.+. .+...+... .+++.+++++
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 1256789999997542 2233322222223466766666543 344444444 8999999999
Q ss_pred HHHHHHHHHc
Q 003996 314 EAWRLFKIMN 323 (780)
Q Consensus 314 e~~~Lf~~~~ 323 (780)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 201
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.59 E-value=0.00014 Score=76.98 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=67.6
Q ss_pred EEeecC-cccccCCCCCCCCccEEEeec-CCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcc
Q 003996 510 ISLLNS-SIHEVSEEFECPQLEFLYIDP-QITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREV 587 (780)
Q Consensus 510 lsl~~~-~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l 587 (780)
+...++ .+..+|....+++|+.|.+.+ +.. ..+++..|.++++|++|+|++|.+..++.
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------- 73 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAP---------------- 73 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECT----------------
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCH----------------
Confidence 444444 566666644577888888875 554 46676777888888888888887765442
Q ss_pred cCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCcc
Q 003996 588 KTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDK 667 (780)
Q Consensus 588 ~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~ 667 (780)
..+..+++|+.|+|++|.|..++.. .+..++ |+.|+|.++.
T Consensus 74 --------------------------------~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~~-L~~l~l~~N~- 114 (347)
T 2ifg_A 74 --------------------------------DAFHFTPRLSRLNLSFNALESLSWK-----TVQGLS-LQELVLSGNP- 114 (347)
T ss_dssp --------------------------------TGGGSCSCCCEEECCSSCCSCCCST-----TTCSCC-CCEEECCSSC-
T ss_pred --------------------------------HHhcCCcCCCEEeCCCCccceeCHH-----HcccCC-ceEEEeeCCC-
Confidence 1345677888888888877654332 233333 8888887765
Q ss_pred Ccc
Q 003996 668 LKY 670 (780)
Q Consensus 668 l~~ 670 (780)
+..
T Consensus 115 ~~c 117 (347)
T 2ifg_A 115 LHC 117 (347)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.59 E-value=1.4e-05 Score=72.78 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|+...++++.+.+. .....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888888888775 23334578999999999999999988653
No 203
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.52 E-value=0.0014 Score=72.00 Aligned_cols=178 Identities=13% Similarity=0.182 Sum_probs=100.2
Q ss_pred CcccccchHHHHHHHHHHhh-------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 153 GYEAFESRVSTLKSIQNALT-------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
....++|.+..+++|.+++. .....-+.|+|++|+|||++|+.+++.... ..+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch----
Confidence 34568899999998887764 133467899999999999999999887532 22333321
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccCCCCC--CCCCCc
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-------------LDTVGIPFG--NDHEGC 284 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs 284 (780)
+ +.. ...... ......+++.....++.+|+||+++.... ...+...+. ....+.
T Consensus 273 --~----l~~----~~~g~~-~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 --E----IMS----KLAGES-ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp --H----HHT----SCTTHH-HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred --H----hhh----hhcchh-HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 1 111 111111 12223334444445678999999842210 001111110 122345
Q ss_pred EEEEEeCChHH-Hhhc----CCCceEecCCCCHHHHHHHHHHHcCCCCC--CcchHHHHHHHHHHhCCC-hHHHHHHH
Q 003996 285 RLLLTARDINV-LLSM----GSKDNFLIGNLNEEEAWRLFKIMNGDDVE--NCKFKSTAINVAQACGGL-PIALTTVA 354 (780)
Q Consensus 285 ~IlvTTR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~Gl-PLai~~~~ 354 (780)
.||.||..... ...+ .....+.+...+.++-.+++..++..... ...+ .++++.+.|. +-.+..+.
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHHH
Confidence 56667765432 1111 22346889999999999999988763322 2222 4566667664 54444443
No 204
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.50 E-value=2.3e-05 Score=83.71 Aligned_cols=62 Identities=10% Similarity=-0.000 Sum_probs=38.0
Q ss_pred ccceEEEeecCcccccC-----CC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCc
Q 003996 505 KKCYAISLLNSSIHEVS-----EE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 505 ~~~r~lsl~~~~~~~~~-----~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~ 568 (780)
..++.+.+.++.+.... .. ..+++|++|.+.++... ..-...++..+++|+.|+|++|.+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 45777788777664311 11 13468888888877643 22223344556778888888887754
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.49 E-value=0.0028 Score=63.51 Aligned_cols=179 Identities=15% Similarity=0.171 Sum_probs=93.6
Q ss_pred CcccccchHHHHHHHHHHh---hc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNAL---TD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++..... | +.++.+.-.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~i~~~~~~~~ 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDFVEM 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E---EEECSCSSTTS
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E---EEEeHHHHHHH
Confidence 4556788887776665443 21 123458899999999999999999876421 2 33332221110
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----c-----------cccCCCCC--CCCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD-----L-----------DTVGIPFG--NDHE 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----~-----------~~l~~~l~--~~~~ 282 (780)
..... ......+.+......+.++++|+++.... + ..+...+. ....
T Consensus 85 --------------~~~~~-~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 85 --------------FVGVG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp --------------CCCCC-HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred --------------hhhhh-HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00111 11223334444444678999999842210 0 00100000 1123
Q ss_pred CcEEEEEeCChHHH-hh-c---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCC-ChHHHHHH
Q 003996 283 GCRLLLTARDINVL-LS-M---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGG-LPIALTTV 353 (780)
Q Consensus 283 gs~IlvTTR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~ 353 (780)
+..||.||...... .. . .....+.+...+.++-.+++...+......++. ....++..+.| .+--+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHHH
Confidence 45577777654321 11 1 123467788888888888887776532211111 12356677777 66554433
No 206
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.46 E-value=0.00067 Score=70.21 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhc--------------CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALTD--------------ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999988888877643 2345688999999999999999998774
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00038 Score=67.09 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcC----CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 003996 161 VSTLKSIQNALTDA----NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS 236 (780)
Q Consensus 161 ~~~~~~l~~~L~~~----~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 236 (780)
...++.+.+++... ....+.|+|++|+|||+||+.+++..... ...++|++.+ ++...+.......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C--
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc--
Confidence 34555666666532 12688999999999999999999987644 3446666543 3444444322111
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccc--cCCCCCCC--CCCcEEEEEeCC
Q 003996 237 DEAEYRRASRLYERLKNENKILVILDNIWKH--LDLDT--VGIPFGND--HEGCRLLLTARD 292 (780)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~~l~~~--~~gs~IlvTTR~ 292 (780)
. ...+...+.. .-+|||||++.. ..|.. +...+... ..+.++|+||..
T Consensus 105 ~------~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 T------MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp C------CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred h------HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1 1122333333 239999999653 33432 11111111 235568888874
No 208
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.37 E-value=0.00021 Score=75.48 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=74.6
Q ss_pred EEEeecCCCCCCcccchHHHhcCCcceEEEecC-CCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHhccccc
Q 003996 531 FLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTR-IEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELTASSDE 609 (780)
Q Consensus 531 ~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~-~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~ 609 (780)
.+.+.++... ..+|. +..+++|++|+|++ |.+..++.
T Consensus 12 ~v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~-------------------------------------- 49 (347)
T 2ifg_A 12 GLRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLEL-------------------------------------- 49 (347)
T ss_dssp CEECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECG--------------------------------------
T ss_pred EEEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcCh--------------------------------------
Confidence 3455554122 46777 78899999999996 88876653
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEe
Q 003996 610 ISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIR 689 (780)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~ 689 (780)
..+..+++|+.|+|++|+|+.+. |..+..|++|+.|+|+++. +..+|+ ..+..++ |+.|.+.
T Consensus 50 ----------~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 50 ----------RDLRGLGELRNLTIVKSGLRFVA-----PDAFHFTPRLSRLNLSFNA-LESLSW-KTVQGLS-LQELVLS 111 (347)
T ss_dssp ----------GGSCSCCCCSEEECCSSCCCEEC-----TTGGGSCSCCCEEECCSSC-CSCCCS-TTTCSCC-CCEEECC
T ss_pred ----------hHhccccCCCEEECCCCccceeC-----HHHhcCCcCCCEEeCCCCc-cceeCH-HHcccCC-ceEEEee
Confidence 24667889999999999998643 3457889999999999986 888862 2334444 9999997
Q ss_pred cC
Q 003996 690 LC 691 (780)
Q Consensus 690 ~c 691 (780)
+.
T Consensus 112 ~N 113 (347)
T 2ifg_A 112 GN 113 (347)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.35 E-value=0.0021 Score=70.13 Aligned_cols=198 Identities=14% Similarity=0.204 Sum_probs=106.0
Q ss_pred cccccchHHHHHHHHHHhh---cC---------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 154 YEAFESRVSTLKSIQNALT---DA---------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
...+.|.++.++++.+.+. .. -.+-+.|+|++|+|||+||+.+++..... .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 4567888877666655432 21 12448899999999999999999876432 233443322110
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCCC--CCCCC
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPFG--NDHEG 283 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~g 283 (780)
..... ......++.......+.+|++|+++.... +..+...+. ....+
T Consensus 89 -------------~~g~~-~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------FVGVG-AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------Hhccc-HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 01111 12233344444444689999999854310 111111110 11235
Q ss_pred cEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH--
Q 003996 284 CRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPI-ALTTVAR-- 355 (780)
Q Consensus 284 s~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~-- 355 (780)
..||.||...+... .. .....+.++..+.++-.+++..++......++. ....|++.+.|..- -+..+..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCcHHHHHHHHHHH
Confidence 56777777654322 11 123377888888888888888776532211111 13357778888762 2322211
Q ss_pred -HH--h-cC---CHHHHHHHHHHhc
Q 003996 356 -AL--R-NK---SLHEWKNALRELQ 373 (780)
Q Consensus 356 -~L--~-~~---~~~~w~~~l~~l~ 373 (780)
.. + +. +.+.+..+++...
T Consensus 233 al~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 233 ALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCeecHHHHHHHHHHHh
Confidence 11 1 21 5667777766643
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.35 E-value=0.00023 Score=73.93 Aligned_cols=105 Identities=14% Similarity=0.215 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHhhcC---------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 156 AFESRVSTLKSIQNALTDA---------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++.+....... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-H--
Confidence 4678888888887777521 23689999999999999999999987532 12245555544332111 1
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 227 IAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
...++......... ....+...+.....-+|+||++...
T Consensus 93 -~~l~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 93 -SRLIGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp -HHHHCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HHhcCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 11122221110000 0012333343334579999999654
No 211
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.34 E-value=2.9e-05 Score=82.84 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=26.3
Q ss_pred CCCccEEEeecCCCCCCcccchHHH----h-cCCcceEEEecCCCcCc
Q 003996 526 CPQLEFLYIDPQITFSEVNIPDNFF----K-GMKKLRVVDLTRIEFGQ 568 (780)
Q Consensus 526 ~~~Lr~L~l~~~~~~~~~~i~~~~~----~-~l~~LrvLdL~~~~~~~ 568 (780)
.++|++|.+.++... ......+ . ..+.|+.|+|++|.+..
T Consensus 71 ~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 115 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASCQLDP 115 (372)
T ss_dssp HTTCCEEECTTSCCC---HHHHHHHHHHHSSCSSCEEEEECTTCCCCH
T ss_pred HhhCCEEEecCCCCC---HHHHHHHHHHHhhCCCCceEEEecCCCCCH
Confidence 467889999887653 1111122 2 23789999999998754
No 212
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.31 E-value=0.0012 Score=69.29 Aligned_cols=174 Identities=15% Similarity=0.100 Sum_probs=93.4
Q ss_pred CcccccchHHHHHHHHHHhhc-----CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 153 GYEAFESRVSTLKSIQNALTD-----ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
....++|.+..++.+...+.. .....+.|+|++|+||||||+.+++..... |. .....-.....++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGDM---- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHHH----
Confidence 445678888877777666542 234678999999999999999999987432 11 1111111111111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccCC---CCC------CC---------CCCcEEE
Q 003996 228 AEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL--DLDTVGI---PFG------ND---------HEGCRLL 287 (780)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~---~l~------~~---------~~gs~Il 287 (780)
..+...+ .++-++++|++.... ..+.+.. ... .. -....++
T Consensus 94 -----------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 94 -----------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 1111111 123466777765331 1110100 000 00 0111222
Q ss_pred -EEeCChHHHhhc--CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 288 -LTARDINVLLSM--GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 288 -vTTR~~~v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
.|++...+...+ .....+.+++.+.++-.+++.+.+..... .--.+.+..|++.++|.|..+..+..
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 344433222211 11235789999999999999887642111 12246788999999999976654443
No 213
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.16 E-value=0.00064 Score=71.88 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred cccCccEEeeccCccCccccchhhH---hhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCC
Q 003996 653 CFQSLTRLIVWGCDKLKYIFSASTI---QSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGL 723 (780)
Q Consensus 653 ~l~~L~~L~L~~c~~l~~l~~~~~l---~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~ 723 (780)
.+++|+.|.|++|. +.... ...+ ..+|+|+.|+|+. +.+...... .....+..+|+|+.|+|++|
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~-~~~la~a~~~~~L~~LdLs~-n~L~d~G~~---~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVV-VEMFLESDILPQLETMDISA-GVLTDEGAR---LLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCT-THHHH-HHHHHHCSSGGGCSEEECCS-SCCBHHHHH---HHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCC-CchHH-HHHHHhCccCCCCCEEECCC-CCCChHHHH---HHHhhcccCCcceEEECCCC
Confidence 46778888887775 22110 0111 2467788888764 334332100 00012345677777777766
No 214
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.15 E-value=0.00014 Score=73.82 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred cccccchHHHHHHHHHHhh---c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 154 YEAFESRVSTLKSIQNALT---D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3457777666555554432 1 12234779999999999999999997653
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.10 E-value=0.00029 Score=82.75 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=81.9
Q ss_pred ccccchHHHHHHHHHHhhc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++.+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc--
Confidence 3578999988888887761 123479999999999999999999987432 233455555442211000
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccCC-----CCCC------CCCCcEEEEEeCC
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--LDTVGI-----PFGN------DHEGCRLLLTARD 292 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~-----~l~~------~~~gs~IlvTTR~ 292 (780)
. ...+...+.....-+|+||++..... ...+.. .+.+ .....+||+||..
T Consensus 567 ------------~-----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 ------------S-----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------C--------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------c-----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 01111222222345899999965421 111100 0100 1235578888873
Q ss_pred -----hHH----Hhhc-----C-CCceEecCCCCHHHHHHHHHHHc
Q 003996 293 -----INV----LLSM-----G-SKDNFLIGNLNEEEAWRLFKIMN 323 (780)
Q Consensus 293 -----~~v----~~~~-----~-~~~~~~l~~L~~~e~~~Lf~~~~ 323 (780)
..+ ...+ . -...+.+.+++.++...++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 111 1111 1 12478899999999888886653
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.10 E-value=0.00023 Score=72.06 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 155 EAFESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
..++|++..+..+.+.+. ......+.|+|++|+|||++|+.+++..... -...+.++.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 457888888888776654 2233567799999999999999999865432 11234555554
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=0.0028 Score=70.94 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHhh------cCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALT------DANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|-+...+.+.+.+. .....++.++|++|+||||||+.++....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35676666666544432 22456899999999999999999998874
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.99 E-value=0.0031 Score=69.03 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHHh---hcC--CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 154 YEAFESRVSTLKSIQNAL---TDA--NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L---~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 357889988877654443 332 235688999999999999999998875
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.99 E-value=0.0027 Score=73.42 Aligned_cols=171 Identities=12% Similarity=0.142 Sum_probs=93.6
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH
Q 003996 155 EAFESRVSTLKSIQNALT----D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (780)
..+.|-++.+++|.+++. . ...+-|.++|++|+|||+||+.+++..... .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH-----
Confidence 345666666665555432 1 235678999999999999999999876532 33443221
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------c-----cccCCCCC--CCCCCcEE
Q 003996 222 KIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD--------L-----DTVGIPFG--NDHEGCRL 286 (780)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~-----~~l~~~l~--~~~~gs~I 286 (780)
+. ...... .......+++......+.+|++|+++.... . ..+...+. ....+..|
T Consensus 274 -----l~----sk~~ge-se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IM----SKLAGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HH----SSCTTH-HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hh----cccchH-HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 011111 223344455555555789999999864310 0 00100000 11123345
Q ss_pred EEEeCChHHHh-hc----CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 287 LLTARDINVLL-SM----GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 287 lvTTR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
|.||...+... .+ .-...+.+...+.++-.++|..+........+. -...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 55665433221 11 224578888889999999998876532221111 1346777777764
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.91 E-value=0.0099 Score=60.78 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+.++|++|+|||+||+.+++....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999999999999998853
No 221
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.89 E-value=0.00065 Score=71.79 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=69.6
Q ss_pred cccccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHh--hccCCcEEEEecCch-----
Q 003996 621 EKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQ--SLEQLQHLEIRLCKS----- 693 (780)
Q Consensus 621 ~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~--~L~~L~~L~l~~c~~----- 693 (780)
.+..+|+|+.|.|+++.- ..+|. + .+++|++|+|..|. +..- .+..+. .+|+|+.|+|+.+..
T Consensus 167 ll~~~P~L~~L~L~g~~~------l~l~~-~-~~~~L~~L~L~~~~-l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNN------LSIGK-K-PRPNLKSLEIISGG-LPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHTCTTCCEEEEECCBT------CBCCS-C-BCTTCSEEEEECSB-CCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHhcCCCCcEEEEeCCCC------ceecc-c-cCCCCcEEEEecCC-CChH-HHHHHHHccCCCCcEEEEeccccccccc
Confidence 345678999999988521 12332 2 37899999998876 4322 223343 689999999964321
Q ss_pred --hHHhhccCcccccccccccCcccEEeccCCCCccccCC-CCCccCCcccceeecccCCCCC
Q 003996 694 --LQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYP-GMHTSEWPALKNLVACNCDKIT 753 (780)
Q Consensus 694 --l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~-~~~~~~~p~L~~L~i~~C~~L~ 753 (780)
++.+.. ......||+|++|.|.+|.--..... ......+|+|+.|+++.| +|.
T Consensus 237 ~~~~~l~~------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~ 292 (362)
T 2ra8_A 237 GDMNVFRP------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLT 292 (362)
T ss_dssp SCGGGTGG------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCB
T ss_pred hhHHHHHH------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCC
Confidence 111110 01224699999999988754321100 011236899999999765 354
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.86 E-value=0.0065 Score=60.71 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=87.4
Q ss_pred CcccccchHHHHHHHHH---Hhhc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQN---ALTD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~---~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.+....++.+ .+.. .-.+-+.|+|++|+|||||++.++..... ..+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH-----
Confidence 34567777665554433 3221 01123899999999999999999987642 12333221
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccCCCCCCC--CC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL------------D----LDTVGIPFGND--HE 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~--~~ 282 (780)
++ ... ... ........+.+......+.++++|++.... . ...+...+... ..
T Consensus 84 -~~----~~~----~~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 -DF----VEM----FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp -HH----HHS----CTT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred -HH----HHH----Hhh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 11 110 001 111223344444443356899999984221 0 01111111111 12
Q ss_pred CcEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 283 GCRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 283 gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
...++.||....... .. .....+.++..+.++-.+++...+......++. ....|++.+.|.-
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 233555666554432 11 234478888889888888887766432111111 1235666666643
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.0065 Score=60.12 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=56.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------ch
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS-------------DE 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------~~ 238 (780)
..++.|+|++|+|||||+..+........ .-..++|+.....++...+ ..+++.++.... ..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999988643211 1357889888776555444 345555554320 11
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 003996 239 AEYRRASRLYERLKNENKILVILDNIW 265 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 265 (780)
........+.+.+...+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 111223345555554578899999884
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.75 E-value=0.053 Score=64.29 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhc---------CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALTD---------ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999988888777652 1236889999999999999999999874
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.00044 Score=62.53 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHhhc--CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 156 AFESRVSTLKSIQNALTD--ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.++|++..++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 567888888887777652 233457799999999999999988654
No 226
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.69 E-value=0.011 Score=59.75 Aligned_cols=150 Identities=11% Similarity=0.154 Sum_probs=79.9
Q ss_pred cccccchHHHHHHHHHHhh--------------cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 154 YEAFESRVSTLKSIQNALT--------------DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~--------------~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
...+.|-++..+.|.+.+. ..... +.|+|++|+||||||+.++..... ..+++....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 3456677776666665432 11223 899999999999999999987643 234444332111
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccCc---------ccc----CCCCC--CCCCCc
Q 003996 220 IKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLDL---------DTV----GIPFG--NDHEGC 284 (780)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~l----~~~l~--~~~~gs 284 (780)
. . ..........+.+......+.++++|++...... ..+ ...+. ......
T Consensus 83 ~--------------~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 83 M--------------Y-VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp S--------------T-THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred h--------------h-hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 0 0011122334444433335799999999653110 000 00010 011233
Q ss_pred EEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcC
Q 003996 285 RLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 285 ~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
-++.+|...++.. .. .-...+.++..+.++-.++|+....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 4555666654432 11 2345677888888888888877664
No 227
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.68 E-value=0.0066 Score=63.43 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=56.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
..++.|.|++|+|||||+.+++...... -..++|++....++.. .+++++...+. ....+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4699999999999999999999876543 2357888877766643 56666654321 122233333443
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 003996 250 RLKNENKILVILDNIWKH 267 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~~ 267 (780)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 344445668999998544
No 228
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.66 E-value=0.0075 Score=61.15 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=57.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYER 250 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 250 (780)
.++.|.|++|+|||||+.+++.....+..-..++||+....++.. .+++++.+.+. .+.++....+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999988776543112468999988877753 37888876432 1222220223333
Q ss_pred H---hcCCeEEEEEeCCCCc
Q 003996 251 L---KNENKILVILDNIWKH 267 (780)
Q Consensus 251 l---~~~k~~LlVlDdv~~~ 267 (780)
+ ...++-+||+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4557899999998544
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.61 E-value=0.003 Score=74.24 Aligned_cols=103 Identities=14% Similarity=0.195 Sum_probs=59.0
Q ss_pred ccccchHHHHHHHHHHhhc---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHH
Q 003996 155 EAFESRVSTLKSIQNALTD---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQG 225 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 225 (780)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++.+.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 3477888888888776651 1235789999999999999999998873 2344555544322100
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 226 EIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
+.+.+|.+.. -........+...+......+|+||++...
T Consensus 530 -~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 -VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp -CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0011121111 111111122334444445689999999754
No 230
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.56 E-value=0.0093 Score=63.99 Aligned_cols=60 Identities=12% Similarity=0.295 Sum_probs=38.1
Q ss_pred cceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccc
Q 003996 506 KCYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRS 571 (780)
Q Consensus 506 ~~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~ 571 (780)
++..+.+..+ +..+... .+ .+|+++.+...- ..+....|.++.+|+.++|+++.+..++.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~l----~~I~~~aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPSTL----EQLKEDIFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTTC----CEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCCc----cEehHHHhhCcccCCeeecCCCcceEech
Confidence 3555555433 3333322 23 368888876421 46777788999999999998887776554
No 231
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.51 E-value=0.013 Score=61.29 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=57.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------c
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS-------------D 237 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------~ 237 (780)
...++.|+|++|+||||||..++....... .-..++|++....++...+. +++..++.... .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 347899999999999999999988743211 13478999988877766554 45566655321 1
Q ss_pred hhHHHHHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 238 EAEYRRASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 238 ~~~~~~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
.........+...+.. .+.-+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1112233344444443 466788888873
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.48 E-value=0.003 Score=64.32 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=42.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe--CCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV--SQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKNE 254 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (780)
+++.|+|++|+||||||.+++.... ..++|++. ....+. ...........+.+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQH 183 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhhC
Confidence 5678999999999999999988621 12456666 222110 0012233444555666653
Q ss_pred CeEEEEEeCCCC
Q 003996 255 NKILVILDNIWK 266 (780)
Q Consensus 255 k~~LlVlDdv~~ 266 (780)
+ +||+|++..
T Consensus 184 -~-LLVIDsI~a 193 (331)
T 2vhj_A 184 -R-VIVIDSLKN 193 (331)
T ss_dssp -S-EEEEECCTT
T ss_pred -C-EEEEecccc
Confidence 4 999999854
No 233
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.015 Score=60.30 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=57.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhcc----------CCC----CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASEN----------KLF----DRVVFSEVSQTPDIKKIQGEIAEKLGLELS----- 236 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~----------~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----- 236 (780)
..++.|+|++|+||||||.+++...... ..- ..++|++....++...+. ++++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcC
Confidence 4789999999999999999998764211 011 478999988887776665 44566665421
Q ss_pred -------c-hhHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 237 -------D-EAEYRRASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 237 -------~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
. .........+...+.. .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 1111233445555554 456788888873
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.015 Score=56.50 Aligned_cols=85 Identities=28% Similarity=0.326 Sum_probs=51.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-----------C-Cc-hhHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE-----------L-SD-EAEYR 242 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~-~~-~~~~~ 242 (780)
..++.|+|++|+|||||+..++. .. -..++|++.....+...+. .+.+..+.. . .. .....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999988 21 3568888877655655543 343333321 0 11 11112
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCc
Q 003996 243 RASRLYERLKNENKILVILDNIWKH 267 (780)
Q Consensus 243 ~~~~l~~~l~~~k~~LlVlDdv~~~ 267 (780)
....+...... ++-+||+|.+...
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 23333333223 5789999987543
No 235
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.44 E-value=0.011 Score=63.55 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=92.3
Q ss_pred ceEEEeecCcccccCCC--CCCCCccEEEeecCCCCCCcccchHHHhcCCcceEEEecCCCcCcccccccCCChhHHHhh
Q 003996 507 CYAISLLNSSIHEVSEE--FECPQLEFLYIDPQITFSEVNIPDNFFKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFC 584 (780)
Q Consensus 507 ~r~lsl~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~i~~~~~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~ 584 (780)
+..+.+.. .+..+... ..|++|+++.+..+.. ..++...|. ...|+.+.|.++ +..+..-.+.++++|+.+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l- 231 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI- 231 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC---SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE-
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc---eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE-
Confidence 45555543 33333322 4678888888876554 467777776 477888887643 444443335555555544
Q ss_pred hcccCCCCCCCccCCHHHHhcccccccccccccccccccccccccccccccccccccccccCCCCccccccCccEEeecc
Q 003996 585 REVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWG 664 (780)
Q Consensus 585 ~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~ 664 (780)
.+|.. ...+. ...+.. .+|+.+.| .++++.+..+ .+..+++|+.+.+.+
T Consensus 232 ---~l~~~--------------l~~I~-------~~aF~~-~~L~~i~l-p~~i~~I~~~-----aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 232 ---EIPEN--------------VSTIG-------QEAFRE-SGITTVKL-PNGVTNIASR-----AFYYCPELAEVTTYG 280 (401)
T ss_dssp ---ECCTT--------------CCEEC-------TTTTTT-CCCSEEEE-ETTCCEECTT-----TTTTCTTCCEEEEES
T ss_pred ---ecCCC--------------ccCcc-------cccccc-CCccEEEe-CCCccEEChh-----HhhCCCCCCEEEeCC
Confidence 11110 00000 001111 34555555 2334433222 244556666666655
Q ss_pred Ccc----CccccchhhHhhccCCcEEEEecCchhHHhhccCcccccccccccCcccEEeccCCCCccccCCCCCccCCcc
Q 003996 665 CDK----LKYIFSASTIQSLEQLQHLEIRLCKSLQEIISEDRTDQVTAYFVFPRVTTLKLDGLPELRCLYPGMHTSEWPA 740 (780)
Q Consensus 665 c~~----l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~p~ 740 (780)
... ...++ -..+..+++|+.+.+. ..++.+.. .....+++|+.|.|.+ +++.+..... ..+ +
T Consensus 281 ~~~~~~~~~~I~-~~aF~~c~~L~~l~l~--~~i~~I~~-------~aF~~c~~L~~l~lp~--~l~~I~~~aF-~~~-~ 346 (401)
T 4fdw_A 281 STFNDDPEAMIH-PYCLEGCPKLARFEIP--ESIRILGQ-------GLLGGNRKVTQLTIPA--NVTQINFSAF-NNT-G 346 (401)
T ss_dssp SCCCCCTTCEEC-TTTTTTCTTCCEECCC--TTCCEECT-------TTTTTCCSCCEEEECT--TCCEECTTSS-SSS-C
T ss_pred ccccCCcccEEC-HHHhhCCccCCeEEeC--CceEEEhh-------hhhcCCCCccEEEECc--cccEEcHHhC-CCC-C
Confidence 421 11232 1345566666666665 23444432 1233456666666643 3555533322 223 5
Q ss_pred cceeecccC
Q 003996 741 LKNLVACNC 749 (780)
Q Consensus 741 L~~L~i~~C 749 (780)
|+.|.+.++
T Consensus 347 L~~l~l~~n 355 (401)
T 4fdw_A 347 IKEVKVEGT 355 (401)
T ss_dssp CCEEEECCS
T ss_pred CCEEEEcCC
Confidence 666666554
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.42 E-value=0.0015 Score=65.47 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=53.7
Q ss_pred cccccccccccccccccccccccCCCCccccccCccEEeeccCccCccccchhhHhhccCCcEEEEecCchhHHhhcc-C
Q 003996 623 VVLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIFSASTIQSLEQLQHLEIRLCKSLQEIISE-D 701 (780)
Q Consensus 623 ~~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~-~ 701 (780)
..+++|++|+|++|.+..+. .+|..+..+++|+.|+|+++. ++.+..+..+..+ +|++|.+++++--..++.. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~---~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD---DMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG---GGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCc---cchhHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 35778888888888887553 244456678888888888875 6665323333333 7888888775533222100 0
Q ss_pred cccccccccccCcccEEec
Q 003996 702 RTDQVTAYFVFPRVTTLKL 720 (780)
Q Consensus 702 ~~~~~~~~~~fp~L~~L~l 720 (780)
+. ...+..||+|+.|+=
T Consensus 242 y~--~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YI--SAIRERFPKLLRLDG 258 (267)
T ss_dssp HH--HHHHHHCTTCCEESS
T ss_pred HH--HHHHHHCcccCeECC
Confidence 00 012456777776653
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.41 E-value=0.057 Score=59.14 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=89.8
Q ss_pred CcccccchHHHHHHHHHH---hhcC---------CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNA---LTDA---------NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~---L~~~---------~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.++.+.++.+. +... -.+-+.|+|++|+||||||+.++..... ..+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH-
Confidence 455678887776665544 3221 1234899999999999999999987642 233444332110
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCCC--CCCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPFG--NDHE 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 282 (780)
..... .......+.+......+.++++|+++.... +..+...+. ....
T Consensus 103 -------------~~~g~-~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 103 -------------MFVGV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp -------------SCTTH-HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred -------------hhhhh-HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 00000 011112222222122458999999953310 011111111 1122
Q ss_pred CcEEEEEeCChHHHh--hc---CCCceEecCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHhCCCh
Q 003996 283 GCRLLLTARDINVLL--SM---GSKDNFLIGNLNEEEAWRLFKIMNGDDVENCKFKSTAINVAQACGGLP 347 (780)
Q Consensus 283 gs~IlvTTR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 347 (780)
+..|+.||...+... .. .....+.++..+.++-.+++..++......++. ....|++.+.|..
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 344555666655432 11 123478888889988888888776432111111 1335677777765
No 238
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.37 E-value=0.016 Score=60.27 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=58.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCC----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------ch
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKL----FDRVVFSEVSQTPDIKKIQGEIAEKLGLELS-------------DE 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------~~ 238 (780)
..++.|+|++|+||||||.+++........ -..++|++....++...+. ++++.++.... ..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 368999999999999999999877532210 2478999988877766654 45566665321 01
Q ss_pred hHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 239 AEYRRASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
........+...+.. .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 111234445555544 567889999873
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.29 E-value=0.0042 Score=56.38 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=30.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
....+.|+|+.|+|||||++.++...... .+ .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45689999999999999999999987642 12 256666544
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.29 E-value=0.016 Score=61.65 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=56.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------ch
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS-------------DE 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------~~ 238 (780)
..++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++.... ..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 36899999999999999998764432211 2346889888776665544 446777765321 01
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 003996 239 AEYRRASRLYERLKNENKILVILDNIW 265 (780)
Q Consensus 239 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 265 (780)
.......++...+...+.-+||+|.+.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 112333444455555578899999863
No 241
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.27 E-value=0.0051 Score=63.38 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhhcC---CeEEEEEEeCCCChHHHHHHHHHHHhh-ccCCCCEEEEEEe
Q 003996 160 RVSTLKSIQNALTDA---NVSIIGVYGMGGIGKTTLVKEFVRQAS-ENKLFDRVVFSEV 214 (780)
Q Consensus 160 R~~~~~~l~~~L~~~---~~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~F~~~~wv~v 214 (780)
+...++.+.+++... ....+.|+|++|+|||+||..+++... .. ...++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 444555566666532 246788999999999999999999876 43 223555554
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.26 E-value=0.013 Score=61.42 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=54.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
..++.|+|++|+||||||.++....... -..++|++....++.. .++.++...+. .+..+....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998766533 2468899988766543 35666654221 122222233333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 003996 250 RLKNENKILVILDNIWK 266 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~ 266 (780)
.....+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 33344567999999843
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.13 E-value=0.018 Score=60.55 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=54.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------chhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 249 (780)
..++.|.|.+|+||||||..++...... -..++|++....++.. .++.++.+.+ ..+..+....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3588899999999999999998776543 2468999988766643 2556665422 1122333333333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 003996 250 RLKNENKILVILDNIWK 266 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~ 266 (780)
.....+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 33334556999999853
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.11 E-value=0.034 Score=54.24 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=53.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------ch
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENK----LFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS-------------DE 238 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------~~ 238 (780)
-.+++|+|+.|+|||||++.++....... .-..++|+.......... +..+.+..+.... ..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 47999999999999999999987543210 134578887655444333 3344555443211 11
Q ss_pred hHHHHHHHHHHHHh-----cCCeEEEEEeCCCC
Q 003996 239 AEYRRASRLYERLK-----NENKILVILDNIWK 266 (780)
Q Consensus 239 ~~~~~~~~l~~~l~-----~~k~~LlVlDdv~~ 266 (780)
........+...+. ..++-++|+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11122334444444 45678999998743
No 245
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.04 E-value=0.0073 Score=60.40 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=61.2
Q ss_pred HhcCCcceEEEecCCCcCcccccccCCChhHHHhhhcccCCCCCCCccCCHHHHhccccccccccccccccccccccccc
Q 003996 550 FKGMKKLRVVDLTRIEFGQLRSLTLGKLPKVTRFCREVKTPSTSPNRQESQEELTASSDEISSDTSTLLFNEKVVLPNLE 629 (780)
Q Consensus 550 ~~~l~~LrvLdL~~~~~~~L~~L~i~~L~~L~~L~~~l~~P~~~l~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 629 (780)
..+++.|+.|+|++|.+..+..+. ..+..+++|+
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~----------------------------------------------~~~~~l~~L~ 199 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMS----------------------------------------------SIVQKAPNLK 199 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGT----------------------------------------------THHHHSTTCC
T ss_pred HhhCCCCCEEECCCCCCCCCccch----------------------------------------------hHHhhCCCCC
Confidence 467899999999999988765421 1345789999
Q ss_pred ccccccccccccccccCCCCcccccc--CccEEeeccCccCccccc-----hhhHhhccCCcEEE
Q 003996 630 ALELNAINADEIWHYNQLPGMVPCFQ--SLTRLIVWGCDKLKYIFS-----ASTIQSLEQLQHLE 687 (780)
Q Consensus 630 ~L~l~~~~l~~l~~~~~lP~~~~~l~--~L~~L~L~~c~~l~~l~~-----~~~l~~L~~L~~L~ 687 (780)
.|+|++|.++.+.. +..+. +|+.|+|++++-...+|. ...+..+|+|+.|+
T Consensus 200 ~L~Ls~N~i~~~~~-------l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 200 ILNLSGNELKSERE-------LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EEECTTSCCCSGGG-------GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEECCCCccCCchh-------hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999998876522 33333 899999999984333321 13567899999886
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.02 E-value=0.015 Score=58.88 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=78.6
Q ss_pred CcccccchHHHHHHHHHHhh---c---------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 153 GYEAFESRVSTLKSIQNALT---D---------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
....++|.++..+++.+... . .-.+-+.|+|++|+|||||++.++..... ..+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH-----
Confidence 44567787766555544322 1 01122889999999999999999987642 22333221
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccCCCCCCCC--C
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHL------------D----LDTVGIPFGNDH--E 282 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~~--~ 282 (780)
++ .... .. ........+.+......+.++++|++.... . ...+...+.... .
T Consensus 108 -~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DF----VEMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HH----HHST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HH----HHHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1100 00 111223344444443357899999984210 0 011111111111 1
Q ss_pred CcEEEEEeCChHHHh-----hcCCCceEecCCCCHHHHHHHHHHHcC
Q 003996 283 GCRLLLTARDINVLL-----SMGSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 283 gs~IlvTTR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
...++.||....... .......+.++..+.++-.+++...+.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 233444565543322 112344778888888888888876654
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.96 E-value=0.021 Score=55.80 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=32.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGE 226 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 226 (780)
..++.|+|++|+|||||++.++...... -..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 3689999999999999999998765432 23466665443 34444433
No 248
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.95 E-value=0.02 Score=60.04 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
..++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++...+. .........+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4689999999999999999998876543 2468899988776643 25566654221 112222222222
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.....+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 2223355699999874
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.81 E-value=0.36 Score=51.69 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877654
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.80 E-value=0.012 Score=56.40 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHhhc---CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 159 SRVSTLKSIQNALTD---ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 159 gR~~~~~~l~~~L~~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.|++.++.+.+.+.. ....+++|.|+.|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677888877763 34579999999999999999999887653
No 251
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.77 E-value=0.15 Score=54.56 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC----chhHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQT-PDIKKIQGEIAEKLGLELS----DEAEYRRASRLYE 249 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~ 249 (780)
...+|.++|++|+||||++..++.....+. ..+..++.... ....+-+....+..+.+.. ..+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 368999999999999999999998876542 23444444321 2233334445555554321 1122222233333
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.+.....=++|+|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 3332233466777653
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.75 E-value=0.099 Score=54.62 Aligned_cols=165 Identities=9% Similarity=-0.045 Sum_probs=98.7
Q ss_pred HHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 003996 169 NALTDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLY 248 (780)
Q Consensus 169 ~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 248 (780)
+.+...-.++..++|+.|.||++.+..+.+..... .|+....+.+....++.++...+..
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~------------------- 70 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA------------------- 70 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------
Confidence 33333445789999999999999999998876533 2543222233344455444332211
Q ss_pred HHHhcCCeEEEEEeCCCC-c--cCccccCCCCCCCCCCcEEEEEeCC-------hHHHhhc-CCCceEecCCCCHHHHHH
Q 003996 249 ERLKNENKILVILDNIWK-H--LDLDTVGIPFGNDHEGCRLLLTARD-------INVLLSM-GSKDNFLIGNLNEEEAWR 317 (780)
Q Consensus 249 ~~l~~~k~~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~IlvTTR~-------~~v~~~~-~~~~~~~l~~L~~~e~~~ 317 (780)
.-+ -+++-++|+|+++. . ..++.+...+.....++.+|++|.. ..+...+ .....+...+++.++...
T Consensus 71 ~pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 MSL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred cCC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 011 13567889999865 3 3344443333333346777666543 2344432 334578899999999998
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 003996 318 LFKIMNGDDVENCKFKSTAINVAQACGGLPIALTTVAR 355 (780)
Q Consensus 318 Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 355 (780)
.+.+.+..... .--.+.+..+++.++|.+..+...-.
T Consensus 150 ~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 150 WVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp HHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHH
Confidence 88877642211 11235778899999998887765433
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.73 E-value=0.023 Score=58.01 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=48.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
...+++|+|++|+||||++..++........ ..+..+.... .....+.+....+..+.+................+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 3579999999999999999999987764211 2455555433 22334444455555554432111111122222233 2
Q ss_pred CCeEEEEEeCC
Q 003996 254 ENKILVILDNI 264 (780)
Q Consensus 254 ~k~~LlVlDdv 264 (780)
+.=++|+|-.
T Consensus 182 -~~dlvIiDT~ 191 (296)
T 2px0_A 182 -EYDHVFVDTA 191 (296)
T ss_dssp -GSSEEEEECC
T ss_pred -CCCEEEEeCC
Confidence 3457888843
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.68 E-value=0.04 Score=57.71 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCC----CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------c
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLF----DRVVFSEVSQTPDIKKIQGEIAEKLGLELS-------------D 237 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------~ 237 (780)
...++.|+|+.|+|||||+..++......... ..++|++....+.... +..+++..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34799999999999999999998875311011 2458888766554333 3345554443210 1
Q ss_pred hhHHHHHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 003996 238 EAEYRRASRLYERLKN-----ENKILVILDNIWKH 267 (780)
Q Consensus 238 ~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~ 267 (780)
.........+...+.. .++-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1122233344444433 46889999988543
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.44 E-value=0.015 Score=55.96 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhc--CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 162 STLKSIQNALTD--ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+.+++|.+.+.. ....+++|+|+.|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445666666653 45689999999999999999999887763
No 256
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.37 E-value=0.039 Score=59.30 Aligned_cols=88 Identities=22% Similarity=0.377 Sum_probs=53.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHh---------CCCCCchhHHH----
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKL---------GLELSDEAEYR---- 242 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l---------~~~~~~~~~~~---- 242 (780)
+.++|+|.+|+|||||+..+......+. -+..+++.+++.. ...++..++...- +...+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3588999999999999999988766442 2445677777654 3445555554321 11111111111
Q ss_pred HHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 243 RASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 243 ~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
..-.+.+++.. +++.||++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 12244555543 689999999984
No 257
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.13 E-value=0.072 Score=52.51 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=29.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
..++.|.|++|+||||||..++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3689999999999999999887665432 24577777554
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.06 E-value=0.13 Score=53.04 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
..++.|.|.+|+||||||..++.....+. ..++|++.. -+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999987765442 578887765 4566676666654
No 259
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.06 E-value=0.04 Score=54.57 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=26.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh-ccCCCCEEEEEEeC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS-ENKLFDRVVFSEVS 215 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 215 (780)
..+++|+|+.|+|||||++.+..... .. -...+++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 46899999999999999999884322 11 2345555543
No 260
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.05 E-value=0.0091 Score=56.38 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=9.6
Q ss_pred HhcCCcceEEEecCCCcC
Q 003996 550 FKGMKKLRVVDLTRIEFG 567 (780)
Q Consensus 550 ~~~l~~LrvLdL~~~~~~ 567 (780)
+...+.|++|+|++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCCSCCEEECTTSCCC
T ss_pred HHhCCCcCEEECcCCCCC
Confidence 444555555555555543
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.03 E-value=0.035 Score=65.05 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=83.0
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 154 YEAFESRVSTLKSIQNALTD-------------ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
...++|.++.+++|.+++.. .....|.|+|++|+||||||+.++...... .+.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchH----
Confidence 45678888888877776641 234578999999999999999998765321 23333211
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccCCCCCCCCCCc
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWKHLD----------------LDTVGIPFGNDHEGC 284 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~~~gs 284 (780)
+....... .......+.+......+.++++|++..... +-.+...+. ...+.
T Consensus 274 ----------l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 274 ----------IMSKLAGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp ----------HSSSSTTH-HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred ----------hhhhhhhh-HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 10111111 122233334433333678999999843210 001111111 11234
Q ss_pred EEEEEeCChHHHh-hc----CCCceEecCCCCHHHHHHHHHHHcC
Q 003996 285 RLLLTARDINVLL-SM----GSKDNFLIGNLNEEEAWRLFKIMNG 324 (780)
Q Consensus 285 ~IlvTTR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 324 (780)
.+|.||....... .+ .....+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 4555655432211 11 1224577888889999999987765
No 262
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.01 E-value=0.012 Score=61.71 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
....++|.+...+.+..........-+.|+|++|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4556889888666655444433334488999999999999999998764
No 263
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.92 E-value=0.073 Score=57.32 Aligned_cols=90 Identities=23% Similarity=0.386 Sum_probs=61.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC---------------CCch
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE---------------LSDE 238 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~---------------~~~~ 238 (780)
.-+-++|.|.+|+|||+|+.++.+..... +-+.++++-+++.. ...++.+++...-... .++.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 34678999999999999999999886432 35778888888765 4667777776542221 0111
Q ss_pred h-----HHHHHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 239 A-----EYRRASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 239 ~-----~~~~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
. .....-.+.+++.. ++.+||++||+-
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 11223456667765 689999999973
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.89 E-value=0.015 Score=53.90 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.88 E-value=0.02 Score=59.74 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 155 EAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 155 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..++|++..++.+...+..+ ..+.++|++|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999998888877654 3588999999999999999998764
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.86 E-value=0.015 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 267
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.83 E-value=0.12 Score=55.61 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=50.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC----chhHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLELS----DEAEYRRASRLYE 249 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~ 249 (780)
+.++|.++|.+|+||||++..++.....+.. ..+.-+.... .....+.+.......+.+.- ..+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988765412 2355555543 22333334444555554311 1122333344444
Q ss_pred HHhcCCeEEEEEeCC
Q 003996 250 RLKNENKILVILDNI 264 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv 264 (780)
.+...+-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444212236667764
No 268
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.78 E-value=0.14 Score=54.92 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=59.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------------CCchh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------------LSDEA 239 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------------~~~~~ 239 (780)
.-+-++|.|.+|+|||+|+.++.+..... +-+.++++-+++.. ...++.+++...-... .+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 34678999999999999999999876432 34667888888765 4567777776653221 11111
Q ss_pred H-----HHHHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 240 E-----YRRASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 240 ~-----~~~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
. ....-.+.+++.. ++..||++||+-
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 1223345566654 689999999984
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.75 E-value=0.025 Score=58.84 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHhh-cCCeEEEEEEeCCCChHHHHHHHHHHHhhccC-CCCEEEEEEeCCCCC-HHHHHHHHHHHhCC-----CCCc
Q 003996 166 SIQNALT-DANVSIIGVYGMGGIGKTTLVKEFVRQASENK-LFDRVVFSEVSQTPD-IKKIQGEIAEKLGL-----ELSD 237 (780)
Q Consensus 166 ~l~~~L~-~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~-----~~~~ 237 (780)
++++.+. =.....++|+|++|+|||||++.+.+....++ .+. ++++-+++... +.++. +.+.. ..++
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~----~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQ----RLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHH----TTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHH----HHhCeEEEEeCCCC
Confidence 3444443 23346899999999999999999987664431 233 44677776543 22222 22210 1111
Q ss_pred hhHH-----HHHHHHHHHHh-cCCeEEEEEeCCC
Q 003996 238 EAEY-----RRASRLYERLK-NENKILVILDNIW 265 (780)
Q Consensus 238 ~~~~-----~~~~~l~~~l~-~~k~~LlVlDdv~ 265 (780)
.... ...-.+.+++. .++..||++||+.
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 1111 11112333443 3689999999984
No 270
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.71 E-value=0.035 Score=54.08 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 163 TLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 163 ~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344444444456678999999999999999999998754
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.69 E-value=0.15 Score=52.00 Aligned_cols=86 Identities=21% Similarity=0.209 Sum_probs=48.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCCCC----CchhHHHH-HHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI--KKIQGEIAEKLGLEL----SDEAEYRR-ASRL 247 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~----~~~~~~~~-~~~l 247 (780)
...++.|+|++|+||||++..++...... -..+.++.... +.. .+-+...++.++.+. ........ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999887643 22455555432 222 222344556655432 11111111 2233
Q ss_pred HHHHhcCCeEEEEEeCC
Q 003996 248 YERLKNENKILVILDNI 264 (780)
Q Consensus 248 ~~~l~~~k~~LlVlDdv 264 (780)
...+.. +.-++|+|-.
T Consensus 180 ~~a~~~-~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTA 195 (306)
T ss_dssp HHHHHT-TCSEEEEEEC
T ss_pred HHHHhc-CCCEEEEECC
Confidence 333444 3447888865
No 272
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.66 E-value=0.021 Score=58.58 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHhhc--CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALTD--ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 477888888888777652 3345677999999999999999998653
No 273
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.65 E-value=0.016 Score=54.70 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=43.5
Q ss_pred ccccccccccccccccccccccCCCCccccccCccEEeeccCccCcccc---chhhHhhccCCcEEEE--ecCchhHHhh
Q 003996 624 VLPNLEALELNAINADEIWHYNQLPGMVPCFQSLTRLIVWGCDKLKYIF---SASTIQSLEQLQHLEI--RLCKSLQEII 698 (780)
Q Consensus 624 ~l~~L~~L~l~~~~l~~l~~~~~lP~~~~~l~~L~~L~L~~c~~l~~l~---~~~~l~~L~~L~~L~l--~~c~~l~~l~ 698 (780)
..++|++|+|++|.+..-.. ..+...+...++|++|+|++|. +..-. -...+...++|++|+| +++. +..-.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~-~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g 139 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVA-FALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNV 139 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHH-HHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHH
T ss_pred hCCCcCEEECcCCCCChHHH-HHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHH
Confidence 34566677777766543110 0111113334567777777764 43311 0123445567777777 4332 22211
Q ss_pred ccCcccccccccccCcccEEeccCC
Q 003996 699 SEDRTDQVTAYFVFPRVTTLKLDGL 723 (780)
Q Consensus 699 ~~~~~~~~~~~~~fp~L~~L~l~~~ 723 (780)
.. .-...+...++|++|+|+++
T Consensus 140 ~~---~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 140 EM---EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HH---HHHHHHHHCSSCCEEECCCS
T ss_pred HH---HHHHHHHhCCCcCEEeccCC
Confidence 00 00012334466777777665
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.61 E-value=0.02 Score=54.72 Aligned_cols=27 Identities=41% Similarity=0.458 Sum_probs=23.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|.|+|+.|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.60 E-value=0.018 Score=53.46 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEEEeCCCChHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEF 196 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v 196 (780)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.59 E-value=0.042 Score=53.01 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=24.9
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...++|.|.|++|+||||.|+.+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998774
No 277
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.59 E-value=0.062 Score=67.81 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=57.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLY 248 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~ 248 (780)
..+.+.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.+.+. ...+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 35789999999999999999998876543 34678888887766555 5566643221 11223344444
Q ss_pred HHHhcCCeEEEEEeCCC
Q 003996 249 ERLKNENKILVILDNIW 265 (780)
Q Consensus 249 ~~l~~~k~~LlVlDdv~ 265 (780)
+.....+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44455578899999984
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.56 E-value=0.029 Score=53.55 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.7
Q ss_pred cCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 173 DANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 173 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.....+|+|+|+.|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35568999999999999999999998876
No 279
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.55 E-value=0.29 Score=53.58 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=35.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGLE 234 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~ 234 (780)
+..+|+|+|.+|+||||++..+......+. ..+.-|+... .+...+.+.....+.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEeccccchhHHHHHHHHhhccCce
Confidence 357999999999999999999998776431 2344455432 222233334444554443
No 280
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.53 E-value=0.071 Score=50.13 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=60.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC---CCCHHHHHHHHH---HHh--CCCCCchh-------H
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ---TPDIKKIQGEIA---EKL--GLELSDEA-------E 240 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~---~~l--~~~~~~~~-------~ 240 (780)
...|.|++..|.||||.|--..-+.-.. =..+.++..-+ ......++..+. .+. +..+.... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 4567778888899999999888776543 23455554333 223333333331 000 11122211 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCc-----cCccccCCCCCCCCCCcEEEEEeCCh
Q 003996 241 YRRASRLYERLKNENKILVILDNIWKH-----LDLDTVGIPFGNDHEGCRLLLTARDI 293 (780)
Q Consensus 241 ~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IlvTTR~~ 293 (780)
........+.+.+++-=|||||++-.. ...+++...+...-....||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 122334455554555569999998332 22233322222233456799999974
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.52 E-value=0.02 Score=53.70 Aligned_cols=26 Identities=12% Similarity=0.381 Sum_probs=22.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.47 E-value=0.041 Score=55.87 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=34.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccC-CCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENK-LFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
....+|+|+|+.|+||||||+.+........ ....+..|+.....-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4567999999999999999999988765421 022344435444332334444443
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.46 E-value=0.022 Score=53.17 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.45 E-value=0.023 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
...+++|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.44 E-value=0.026 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.+|.|.|++|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998763
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.43 E-value=0.022 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+.|.|+|+.|+||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998764
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.36 E-value=0.025 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+++|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998876
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.35 E-value=0.03 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|.|++|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988763
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.34 E-value=0.022 Score=62.55 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 156 AFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|++..++.+...+..+ ..+.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 5689998888888777654 3678999999999999999998664
No 290
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.34 E-value=0.029 Score=52.85 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+|.|.|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999988764
No 291
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.31 E-value=0.12 Score=53.15 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHhhc----CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 158 ESRVSTLKSIQNALTD----ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 158 ~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|....+..+...+.. ....+|+|.|+.|+||||+++.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444445544444432 2356999999999999999999987765
No 292
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.038 Score=53.56 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 161 VSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 161 ~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
++..+.+.+.+......+++|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34445555555455678999999999999999999988764
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.28 E-value=0.037 Score=58.49 Aligned_cols=45 Identities=24% Similarity=0.204 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHhh-------------c--CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 157 FESRVSTLKSIQNALT-------------D--ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 157 ~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888877762 1 1346789999999999999999998874
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.25 E-value=0.022 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 295
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.23 E-value=0.017 Score=55.94 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=58.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc-
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN- 253 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 253 (780)
...++.|+|+.|+||||++..+.++...+ -..++.+...... . ....+++.++...+.... .....+++.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 35789999999999999999998887654 2234444333221 1 122445555554332110 011223333332
Q ss_pred ---CCeEEEEEeCCCCc--cCccccCCCCCCCCCCcEEEEEeCC
Q 003996 254 ---ENKILVILDNIWKH--LDLDTVGIPFGNDHEGCRLLLTARD 292 (780)
Q Consensus 254 ---~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IlvTTR~ 292 (780)
++.-+||+|.+... +.++.+ ..+.+ .|..||+|-+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 34459999998643 111112 11111 26678888874
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.21 E-value=0.046 Score=55.48 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.08 E-value=0.03 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.+|.|.|++|+||||+++.+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987753
No 298
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.08 E-value=0.16 Score=51.56 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=51.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCC----CchhHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAEKLGLEL----SDEAEYRRASRLYER 250 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l~~~ 250 (780)
..+++++|.+|+||||++..++...... -..+.++...... ...+.++...+..+.+. ...+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999877643 2345666554332 23334455566666532 112223333445555
Q ss_pred HhcCCeEEEEEeCC
Q 003996 251 LKNENKILVILDNI 264 (780)
Q Consensus 251 l~~~k~~LlVlDdv 264 (780)
+...+-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54222237778865
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.04 E-value=0.032 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.04 E-value=0.026 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 301
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.03 E-value=0.069 Score=55.20 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhh----cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 160 RVSTLKSIQNALT----DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 160 R~~~~~~l~~~L~----~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
-+...+.+++.+. .+....|.|+|+.|+||||+++.++.....
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3444555555543 445677999999999999999999887653
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.02 E-value=0.03 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.02 E-value=0.027 Score=52.69 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998764
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.99 E-value=0.035 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.96 E-value=0.034 Score=51.17 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
..+++.|+|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887643
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.92 E-value=0.033 Score=51.38 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998765
No 307
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.91 E-value=0.049 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.89 E-value=0.033 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 309
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.85 E-value=0.043 Score=52.79 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988755
No 310
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.82 E-value=0.029 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+.|.|+|++|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4578999999999999999987754
No 311
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.79 E-value=0.18 Score=51.33 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=48.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCCC----chhHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD-IKKIQGEIAEKLGLELS----DEAEYRRASRLYE 249 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~ 249 (780)
...+++|+|.+|+||||++..++...... -..+.++....... ....+..+.+..+.+.- ..+..+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999999877643 23455555432221 11223345555555321 1122223233333
Q ss_pred HHhcCCeEEEEEeCC
Q 003996 250 RLKNENKILVILDNI 264 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv 264 (780)
.+...+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 432113457888875
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.79 E-value=0.036 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=22.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.79 E-value=0.03 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999998764
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.78 E-value=0.03 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|.|+|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999988763
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.77 E-value=0.04 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999988653
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.75 E-value=0.037 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.73 E-value=0.041 Score=52.16 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|.|.|+.|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998764
No 318
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.71 E-value=0.042 Score=51.33 Aligned_cols=25 Identities=44% Similarity=0.595 Sum_probs=22.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.++|+|+.|+|||||++.+......
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999987653
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.67 E-value=0.029 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998765
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.62 E-value=0.093 Score=51.79 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=24.2
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.....|.|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999988763
No 321
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.61 E-value=0.047 Score=52.47 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=24.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
..+|.|.|+.|+||||+|+.+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999998764
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.61 E-value=0.04 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|+|+|+.|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988654
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.61 E-value=0.049 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|.|+.|+||||+++.+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988654
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.60 E-value=0.041 Score=52.08 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997654
No 325
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.57 E-value=0.12 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.5
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.57 E-value=0.049 Score=52.01 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=23.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+|+|.|+.|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.55 E-value=0.041 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.52 E-value=0.044 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=22.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
...|.|+|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999886
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.52 E-value=0.048 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
....+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.51 E-value=0.033 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.48 E-value=0.045 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|+|.|++|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 332
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.47 E-value=0.033 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987654
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.46 E-value=0.047 Score=54.29 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988754
No 334
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.44 E-value=0.29 Score=46.42 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=33.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
.|+|-|.-|+||||.++.+++..+.+. ..+++..-.......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHhhc
Confidence 477899999999999999999887652 234444333334445555555543
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.42 E-value=0.63 Score=47.89 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=39.1
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ-TPDIKKIQGEIAEKLGL 233 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~ 233 (780)
....+++|+|+.|+||||+++.+....+... ..+.++...- .....+-+....++++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4568999999999999999999998776531 2344444332 22344455666677764
No 336
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.41 E-value=0.067 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988754
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.38 E-value=0.053 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.35 E-value=0.045 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.33 E-value=0.039 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.33 E-value=0.048 Score=54.01 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+++|+|+.|+||||+++.+.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997764
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.30 E-value=0.052 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 342
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.29 E-value=0.04 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.9
Q ss_pred eEEEEEEeCCCChHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEF 196 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v 196 (780)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.28 E-value=0.053 Score=52.00 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998643
No 344
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.24 E-value=0.11 Score=53.46 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
++.+||+|.|-|||||||.+..+....... -..+.-|....
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 467999999999999999999988877654 23466666653
No 345
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.20 E-value=0.35 Score=51.58 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHH--HHHHHHHHHhCCCC----CchhHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIK--KIQGEIAEKLGLEL----SDEAEYRRASRLY 248 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~i~~~i~~~l~~~~----~~~~~~~~~~~l~ 248 (780)
...++.|+|++|+||||++..++.....+ -..+..+... .+... +.+....+..+.+. ...+.........
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35789999999999999999999887654 2334555543 23322 22445555665532 1112223333444
Q ss_pred HHHhcCCeEEEEEeCC
Q 003996 249 ERLKNENKILVILDNI 264 (780)
Q Consensus 249 ~~l~~~k~~LlVlDdv 264 (780)
+.+....-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4443212226667754
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.20 E-value=0.053 Score=51.75 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 347
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.16 E-value=0.075 Score=50.22 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 164 LKSIQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 164 ~~~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555543 2234689999999999999999998875
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.16 E-value=0.055 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.10 E-value=0.058 Score=51.84 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCE
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDR 208 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~ 208 (780)
..+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887643 3554
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.09 E-value=0.062 Score=51.75 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=26.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCE
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDR 208 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~ 208 (780)
..+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887643 3444
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.09 E-value=0.056 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.03 E-value=0.036 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=18.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987754
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.01 E-value=0.55 Score=48.47 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=37.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEK 230 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 230 (780)
..++.|.|.+|+||||||..++...... -..++|++.. -+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 4689999999999999999998876542 2467776653 4566776666544
No 354
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.98 E-value=0.036 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.97 E-value=0.068 Score=48.75 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+++|+|+.|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999999876
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.96 E-value=0.067 Score=54.91 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeC
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVS 215 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 215 (780)
....+++|.|+.|+|||||++.+..-......-..+.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 446799999999999999999998876542111235555543
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.96 E-value=0.06 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 358
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.94 E-value=0.8 Score=60.03 Aligned_cols=230 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC--------CCchhHHHHHHHHHHH
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLE--------LSDEAEYRRASRLYER 250 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~--------~~~~~~~~~~~~l~~~ 250 (780)
+.++|++|+|||++|+.+..... -...+.++.+...+...+++.+...+... .+..
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~----~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSS----LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCS----SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHhcCC----CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred HhcCCeEEEEEeCCCCccC--------------------ccccCCCCCCCCCCcEEEEEeCChH-------HHhhcCCCc
Q 003996 251 LKNENKILVILDNIWKHLD--------------------LDTVGIPFGNDHEGCRLLLTARDIN-------VLLSMGSKD 303 (780)
Q Consensus 251 l~~~k~~LlVlDdv~~~~~--------------------~~~l~~~l~~~~~gs~IlvTTR~~~-------v~~~~~~~~ 303 (780)
.+++.++.+||+.-+.. |-.-.......-.+..+|.++.... -.+......
T Consensus 1334 --~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1334 --DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp --SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred --CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Q ss_pred eEecCCCCHHHHHHHHHHHcC-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCCcCC
Q 003996 304 NFLIGNLNEEEAWRLFKIMNG-DDVENCKFKSTAINVAQACGGLPIALTTVARALRNKSLHEWKNALRELQTPSVVNFEG 382 (780)
Q Consensus 304 ~~~l~~L~~~e~~~Lf~~~~~-~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~~~~~~~~ 382 (780)
.+.++..+.++-..+|..... .-...+++..++..|++.. .+-|..+...+.........-
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at------------------i~~y~~v~~~~~~~~k~HY~F 1473 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS------------------VHLYNECKARYSTGLQSHYLF 1473 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH------------------HHHHHHHHHHSCTTTCTTCCC
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH------------------HHHHHHHHHHcCCccCCCccc
Q ss_pred CCccccchHHhhhccCChhhHHHHHHhhcccCCCCCHHHHHHHHHhcCc--ccCccchHHHHHHHHHHHHHHHHccc
Q 003996 383 VPAETYSSIELSFKYLKGEQLKKIFQLCSLIGNSFCLIDLLRYSMGLGI--FHRVNKMEDARNKLYALVHELRDCCL 457 (780)
Q Consensus 383 ~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~i~~~~Li~~W~a~g~--i~~~~~~~~~~~~~~~~i~~L~~~~l 457 (780)
..+++.+++.--+...++. ..-+.+.++++|+-|.. +.+.-..++..+.+.+++.+.....|
T Consensus 1474 nlRDLsrv~qGll~~~~~~-------------~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1474 SPRELTRLVRGVYTAINTG-------------PRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHTS-------------SCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCchh-------------hhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.93 E-value=0.06 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.88 E-value=0.065 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.88 E-value=0.057 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|+|+.|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987653
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.82 E-value=0.049 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.79 E-value=0.06 Score=51.56 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 364
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.79 E-value=0.08 Score=50.04 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+|+|+|+.|+||||+++.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998864
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.77 E-value=0.066 Score=54.74 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
+..+++|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877643
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.76 E-value=0.062 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997754
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.74 E-value=0.051 Score=50.31 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.9
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
++++|+|..|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998877653
No 368
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.64 E-value=0.065 Score=51.92 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=23.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988754
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.64 E-value=0.063 Score=52.14 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|.|++|+||||+++.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.62 E-value=0.065 Score=52.25 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|.|++|+||||+|+.+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998653
No 371
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.60 E-value=0.26 Score=53.57 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=36.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
..++.|.|.+|+||||||..++....... -..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 46899999999999999999998775431 13577776543 4456666554
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.59 E-value=0.065 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 373
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.54 E-value=0.082 Score=56.71 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhhc--------------CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 156 AFESRVSTLKSIQNALTD--------------ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.++|.++.++.+..++.. ...+-+.++|++|+||||+|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467888777777665521 13456889999999999999999988753
No 374
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.53 E-value=0.071 Score=60.47 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=39.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 153 GYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 153 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4456889998888888777654 57899999999999999999986643
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.53 E-value=0.087 Score=50.67 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999998765
No 376
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.39 E-value=0.082 Score=49.05 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.++++|+|+.|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 377
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.33 E-value=0.07 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+++|+|+.|+|||||++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988765
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.23 E-value=0.099 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999987643
No 379
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.22 E-value=0.25 Score=61.69 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=60.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
-++|-|+|+.|+||||||.++......+ =...+|+...+..+..- ++.+|.+.+. ...++.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 3799999999999999999998765543 46688998888777653 7888876432 222444445555
Q ss_pred HHhcCCeEEEEEeCCC
Q 003996 250 RLKNENKILVILDNIW 265 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~ 265 (780)
.++.+..-+||+|-|-
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 5566677899999884
No 380
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.21 E-value=0.088 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|.|.|++|+||+|.|+.+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998765
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.21 E-value=0.094 Score=53.53 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+++|+|+.|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987764
No 382
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.20 E-value=0.25 Score=61.67 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=57.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCc------hhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSD------EAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (780)
.+++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.+.+. .+..+....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999998876543 3468898887776653 26677764321 122333333333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 003996 250 RLKNENKILVILDNIWKH 267 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~~ 267 (780)
.....+.-+||+|-+...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 333446679999998644
No 383
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.16 E-value=0.18 Score=58.36 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=57.7
Q ss_pred cccccchHHHHHHHHHHhh----------c---CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCH
Q 003996 154 YEAFESRVSTLKSIQNALT----------D---ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDI 220 (780)
Q Consensus 154 ~~~~~gR~~~~~~l~~~L~----------~---~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 220 (780)
...+.|-++..+.|.+.+. . ...+-+.++|++|+|||.+|+.+++..... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----
Confidence 3455677777777666543 0 123457899999999999999999987632 233321
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 003996 221 KKIQGEIAEKLGLELSDEAEYRRASRLYERLKNENKILVILDNIWK 266 (780)
Q Consensus 221 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 266 (780)
.+ ++. .+-..+ +..+..+++.-+...+++|++|+++.
T Consensus 545 ~~----l~s----~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PE----LLT----MWFGES-EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HHT----TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ch----hhc----cccchH-HHHHHHHHHHHHHcCCceeechhhhH
Confidence 11 111 111122 23455666666666789999999864
No 384
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.15 E-value=0.19 Score=52.62 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=30.0
Q ss_pred HHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 164 LKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 164 ~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+.+.+. ..+..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444444444 456789999999999999999999887653
No 385
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.15 E-value=0.63 Score=50.35 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=37.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
..++.|.|.+|+||||||..++....... -..++|++.. -+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 46899999999999999999988765431 2357777664 455667766654
No 386
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.14 E-value=0.086 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.12 E-value=0.09 Score=51.25 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 388
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.09 E-value=0.15 Score=54.60 Aligned_cols=89 Identities=25% Similarity=0.271 Sum_probs=56.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCC--CCEEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH----
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKL--FDRVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE---- 240 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~---- 240 (780)
-+-++|.|.+|+|||+|+.++++.....+. =+.++++-+++.. ...++.+++...=... .++...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 355778999999999999999988765321 1356777777654 4566666666532111 111111
Q ss_pred -HHHHHHHHHHHh--cCCeEEEEEeCC
Q 003996 241 -YRRASRLYERLK--NENKILVILDNI 264 (780)
Q Consensus 241 -~~~~~~l~~~l~--~~k~~LlVlDdv 264 (780)
....-.+.+++. .++..|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 122335566666 368999999996
No 389
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.07 E-value=0.24 Score=52.76 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=55.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccC-CCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhH-----
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENK-LFD-RVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAE----- 240 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~----- 240 (780)
+-++|.|..|+|||+|+.++.+...... +-+ .++++-+++.. .+.++.+++...=... .++...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 4478999999999999999988765421 111 56777777654 4566666655431110 111111
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 241 YRRASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 241 ~~~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
....-.+.+++.. ++..||++||+-
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1123356677763 689999999974
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.06 E-value=0.084 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998865
No 391
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.04 E-value=0.3 Score=48.01 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=31.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEI 227 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 227 (780)
..++.|.|.+|+|||++|.+++.+...+ .-..+++++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999999976543221 123466665543 444544443
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.98 E-value=0.27 Score=49.97 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=34.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIA 228 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 228 (780)
...+++|.|++|+|||||++.++....... -..++|+.... +..++...+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHH
Confidence 346899999999999999999988766431 11466665432 3344444443
No 393
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.93 E-value=0.54 Score=48.92 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=34.7
Q ss_pred HHHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhhccC-CCCEEEEEEeCCC
Q 003996 166 SIQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQASENK-LFDRVVFSEVSQT 217 (780)
Q Consensus 166 ~l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~ 217 (780)
++++.+.. ...+-++|+|.+|+|||+|+..+.+....+. .+. ++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45555552 3346789999999999999999998765421 233 356777654
No 394
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.90 E-value=0.098 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=22.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.87 E-value=0.1 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998763
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.85 E-value=0.21 Score=48.74 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=24.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
....|.|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999998865
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.84 E-value=0.11 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.82 E-value=0.1 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.3
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 399
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.81 E-value=0.2 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.80 E-value=0.31 Score=61.59 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=56.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------chhHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELS------DEAEYRRASRLYE 249 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 249 (780)
..++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.+.+ ..+..+....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4699999999999999999998877643 2468888887766643 2667776432 1222333333333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 003996 250 RLKNENKILVILDNIWK 266 (780)
Q Consensus 250 ~l~~~k~~LlVlDdv~~ 266 (780)
.....+.-+||+|-+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 33344567999999753
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.76 E-value=0.1 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.4
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988763
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.67 E-value=0.11 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 403
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.66 E-value=0.096 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 404
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.65 E-value=0.092 Score=51.63 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.. .+++|+|+.|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999988643
No 405
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.63 E-value=0.1 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|.|+|+.|+||||||..++....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998653
No 406
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.63 E-value=0.29 Score=47.74 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=28.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEE
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSE 213 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~ 213 (780)
...|.|.|+.|+||||+++.+.+..... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988754 355344443
No 407
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.60 E-value=0.087 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998764
No 408
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.58 E-value=0.24 Score=50.76 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=31.3
Q ss_pred cCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 173 DANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 173 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
....++|+|+|-||+||||+|..++...... -..++-|....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 3467899999999999999999998887654 23466666654
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.57 E-value=0.062 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=16.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHH-HHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFV-RQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~-~~~ 200 (780)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 410
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.55 E-value=0.33 Score=52.88 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHhhcc
Q 003996 160 RVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQASEN 203 (780)
Q Consensus 160 R~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~ 203 (780)
....+..+..++.+.+ +.+.|.|.+|+||||++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4455566666665443 489999999999999999999887654
No 411
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.53 E-value=0.61 Score=50.36 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=35.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
..++.|.|.+|+||||+|..++.....+ -..++|++... +..++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 4689999999999999999998877654 23677766543 34445555443
No 412
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.49 E-value=0.086 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.+..-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987543
No 413
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.47 E-value=0.19 Score=51.69 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEe
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEV 214 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~v 214 (780)
...+++|+|++|+||||++..++...... -..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 46899999999999999999999877643 234555544
No 414
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.45 E-value=0.095 Score=51.38 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999987544
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.44 E-value=0.12 Score=50.46 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998864
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.38 E-value=0.13 Score=53.75 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+++|+|+.|+||||+++.++...+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999987764
No 417
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.37 E-value=0.19 Score=49.99 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
....+++|+|+.|+|||||++.+......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 44579999999999999999999876543
No 418
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.30 E-value=0.35 Score=46.38 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=35.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
..|.|.|+.|+||||+++.+.+..... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988754 3433444333333334555555554
No 419
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.29 E-value=0.14 Score=51.75 Aligned_cols=27 Identities=26% Similarity=0.189 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..++|.|.|+.|+||||||..+++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 357899999999999999999998743
No 420
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.25 E-value=0.24 Score=53.61 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=30.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD 219 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 219 (780)
...+++|+|..|+|||||++.+....+.. .+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35799999999999999999999877643 2344444344443
No 421
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.23 E-value=0.084 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
..+++|+|+.|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999876
No 422
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.19 E-value=0.62 Score=51.35 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=40.2
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHH-HhCCCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAE-KLGLEL 235 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~-~l~~~~ 235 (780)
..++.|.|.+|+||||||.+++.....+. -..++|++... +..++...++. ..+.+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~ 299 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVRL 299 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSCC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCCh
Confidence 46889999999999999999998776431 23577776644 46677776654 344443
No 423
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.16 E-value=0.38 Score=46.14 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCE
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDR 208 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~ 208 (780)
...|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4688999999999999999999988754 3444
No 424
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.14 E-value=0.12 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.-.++|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.11 E-value=0.072 Score=54.10 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=20.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
+..+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.04 E-value=0.098 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..++|.|+|+.|+||||||..+++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999754
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.98 E-value=0.17 Score=50.39 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=23.9
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999998776
No 428
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.88 E-value=0.1 Score=51.16 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998654
No 429
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.88 E-value=0.31 Score=47.11 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=35.3
Q ss_pred cCCeEEEEEEeCCCChHHHHHHHHHHHhhc-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 003996 173 DANVSIIGVYGMGGIGKTTLVKEFVRQASE-NKLFDRVVFSEVSQTPDIKKIQGEIAE 229 (780)
Q Consensus 173 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~ 229 (780)
......|.|.|..|+||||+++.+.+.... . .+..+....-.....+.+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-CceeeEeeeCCCCChHHHHHHHHHh
Confidence 345678999999999999999999998765 3 2443331222222234444455544
No 430
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.80 E-value=0.34 Score=51.58 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=55.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhcc--------CCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCch
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASEN--------KLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDE 238 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~ 238 (780)
+-++|.|.+|+|||+|+.++++..... ++-+ .++++-+++.. ...++.+++.+.=... .++.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999998876542 1122 56777777654 4556666554321010 1111
Q ss_pred hH-----HHHHHHHHHHHhc--CCeEEEEEeCCC
Q 003996 239 AE-----YRRASRLYERLKN--ENKILVILDNIW 265 (780)
Q Consensus 239 ~~-----~~~~~~l~~~l~~--~k~~LlVlDdv~ 265 (780)
.. ....-.+.+++.. ++..|+++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11 1223356677763 689999999974
No 431
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.80 E-value=0.13 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
..+++|+|+.|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 432
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.79 E-value=0.11 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||.+.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987643
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.76 E-value=0.12 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999987643
No 434
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.66 E-value=0.36 Score=46.44 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
-.|.+.|.||+||||+|..+......+. + .+..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCC
Confidence 3477899999999999999988876542 3 344555544
No 435
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.62 E-value=1.7 Score=46.98 Aligned_cols=88 Identities=10% Similarity=0.180 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcchhhhhHHHHHHHHHHHHHHHHHhhccCcccccccCCcccc
Q 003996 67 IEEKVEKWLVSANGIIDRAAKFVEHEESTNKRCLKGLCPNLKTRYQLSKKAETEMKALLELGEEVKKFDIVSHRTIPEEI 146 (780)
Q Consensus 67 ~~~~v~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~~~~~~~r~~i~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 146 (780)
....+..|..++.++.-.+|-.+|--+ . . ....+..+..++..+.++++++.....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e-d--------~-~~~~~~~~~~~i~~l~~~l~~~~~~~~-------------- 216 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE-D--------L-PPLDDEAIISDIENIAAEISQLLATKD-------------- 216 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS-S--------S-CCCCTTTHHHHHHHHHHHHHHHTTTHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-c--------C-ChhhHHHHHHHHHHHHHHHHHHHHHhh--------------
Confidence 367789999999998888888776211 0 0 011234456677777777776632110
Q ss_pred ccccCCCcccccchHHHHHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 147 WLKSNKGYEAFESRVSTLKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 147 ~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+.. ..+.+ |+|+|.+|+|||||...+....
T Consensus 217 -----------------~~~~~----r~~~k-V~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 217 -----------------KGELL----RTGLK-VAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp -----------------HHHHH----HHCEE-EEEEECTTSSHHHHHHHHHHHH
T ss_pred -----------------hhhhh----cCCCE-EEEEcCCCCCHHHHHHHHhCCC
Confidence 01111 12343 7899999999999999998764
No 436
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.60 E-value=0.13 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.58 E-value=0.11 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987643
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.56 E-value=0.15 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 439
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.55 E-value=0.32 Score=50.65 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=34.5
Q ss_pred cCCeEEEEEEeCCCChHHHHHHHHHHHhh--ccCCCCEEEEEEeCCCCCHH
Q 003996 173 DANVSIIGVYGMGGIGKTTLVKEFVRQAS--ENKLFDRVVFSEVSQTPDIK 221 (780)
Q Consensus 173 ~~~~~vi~I~G~~GvGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~ 221 (780)
+...+++.+.|.||+||||+|..++.... .. -..+.-|+.....++.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNLS 63 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCChH
Confidence 45578999999999999999999988776 33 3356666665444433
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.54 E-value=0.12 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.+..-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 441
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.51 E-value=0.64 Score=50.59 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=57.4
Q ss_pred HHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCC-HHHHHHHHHH----HhCC-------
Q 003996 167 IQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPD-IKKIQGEIAE----KLGL------- 233 (780)
Q Consensus 167 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~----~l~~------- 233 (780)
+++.+.. ..-+.++|.|..|+|||+|+.++.+.. +-+.++++-+++... ..++++++-+ ..+.
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 3444441 234678999999999999999987653 246788888887665 4555555422 1110
Q ss_pred ----CCCchhHH-----HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 003996 234 ----ELSDEAEY-----RRASRLYERLKN-ENKILVILDNIWK 266 (780)
Q Consensus 234 ----~~~~~~~~-----~~~~~l~~~l~~-~k~~LlVlDdv~~ 266 (780)
..+..... -..-.+.+++.+ ++..||++||+..
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 01111111 112234445543 6899999999853
No 442
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.49 E-value=0.13 Score=50.64 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999987643
No 443
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.47 E-value=0.14 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.45 E-value=0.1 Score=50.28 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999987643
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.44 E-value=0.12 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987543
No 446
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.41 E-value=0.34 Score=50.06 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=35.7
Q ss_pred hcCCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHH
Q 003996 172 TDANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKK 222 (780)
Q Consensus 172 ~~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 222 (780)
.+...+++.+.|-||+||||+|..++...... -..++-|+.....++..
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhH
Confidence 34557888899999999999999999887654 34566676665444433
No 447
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.40 E-value=0.13 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+++|+|+.|+|||||++.+..-.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46899999999999999999886543
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.40 E-value=0.12 Score=51.02 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||++.+..-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.40 E-value=0.18 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEEeCCCChHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 450
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.38 E-value=0.15 Score=51.86 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445789999999999999999998766
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.37 E-value=0.18 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=20.4
Q ss_pred EEEEEEeCCCChHHHHHHHHHHH
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 452
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.37 E-value=0.12 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.0
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.+..-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 453
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.33 E-value=0.18 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998764
No 454
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.24 E-value=0.42 Score=51.52 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCChHHHHHH-HHHHHhhccCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhHHH--
Q 003996 176 VSIIGVYGMGGIGKTTLVK-EFVRQASENKLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAEYR-- 242 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~-~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~~~-- 242 (780)
-+-++|.|.+|+|||+||. .+.+.. .-+ .++++-+++.. ...++.+++...-... .++.....
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 4568899999999999964 666653 245 35778888765 4556666665532221 11111111
Q ss_pred ---HHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 243 ---RASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 243 ---~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
..-.+.+++.. ++..|+++||+.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 12244555543 689999999973
No 455
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.22 E-value=0.13 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987543
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.11 E-value=0.13 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.+.|.|.|+.|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678899999999999999998764
No 457
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.06 E-value=0.13 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999988643
No 458
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.05 E-value=0.13 Score=51.50 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 459
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.01 E-value=0.17 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998664
No 460
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.00 E-value=0.14 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.+..-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.00 E-value=0.14 Score=47.76 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEeCCCChHHHHHHHHHH
Q 003996 178 IIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~ 198 (780)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 462
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.99 E-value=0.2 Score=47.78 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 164 LKSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 164 ~~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.+.+.+.......--|+|+|.+|+|||||+..+....
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333333334445677899999999999999888643
No 463
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.92 E-value=1.3 Score=47.88 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=53.9
Q ss_pred eEEEEEEeCCCChHHHHH-HHHHHHhhc----cCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCC--------CCCchhH
Q 003996 176 VSIIGVYGMGGIGKTTLV-KEFVRQASE----NKLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGL--------ELSDEAE 240 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~--------~~~~~~~ 240 (780)
-+-++|.|..|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+++...=.. ..++...
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 456889999999999995 466665542 12234 47788888765 455666666543211 1111111
Q ss_pred H-----HHHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 241 Y-----RRASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 241 ~-----~~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
. ...-.+.+++.. ++..||++||+.
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1 112244555543 689999999974
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.86 E-value=0.22 Score=48.98 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...|.|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998764
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.85 E-value=0.14 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987543
No 466
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.84 E-value=0.14 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.+..-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987643
No 467
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.83 E-value=0.25 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHH
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
....+++|+|+.|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3457999999999999999999987
No 468
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.80 E-value=0.18 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEEeCCCChHHHHHHHHHHHh
Q 003996 178 IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 469
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.79 E-value=1 Score=48.42 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCChHHHHH-HHHHHHhhccCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC--------CCchhHH---
Q 003996 176 VSIIGVYGMGGIGKTTLV-KEFVRQASENKLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGLE--------LSDEAEY--- 241 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~~~~--- 241 (780)
-+-++|.|..|+|||+|+ ..+.+.. +-+ .++++-+++.. .+.++.+++.+.-... .++....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 456789999999999996 4565532 234 46788888765 4566666655442221 1111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 242 --RRASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 242 --~~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
-..-.+-+++.. ++..||++||+.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 112234444443 689999999974
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.77 E-value=0.17 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..++.|+|++|+|||||+..+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987554
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.77 E-value=0.14 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..+++|+|+.|+|||||.+.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 472
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.73 E-value=0.53 Score=51.45 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCC-CHHHHHHHHHH----HhCCC------
Q 003996 167 IQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTP-DIKKIQGEIAE----KLGLE------ 234 (780)
Q Consensus 167 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~----~l~~~------ 234 (780)
.++.|.. ..-+-++|.|..|+|||+|+.++.+... -+.++++-+++.. ...++++++-+ ..|..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 3444442 3346789999999999999999987632 4678888888753 34455544322 11210
Q ss_pred -----CCchhHH-----HHHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 235 -----LSDEAEY-----RRASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 235 -----~~~~~~~-----~~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
.+..... ...-.+.+++.. ++..||++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0111111 122244555554 689999999974
No 473
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.62 E-value=0.38 Score=50.59 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.61 E-value=0.22 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999988654
No 475
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.54 E-value=0.1 Score=58.79 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=31.1
Q ss_pred cccchHHHHHHHHHHhhcCCeE-----------EEEEEeCCCChHHHHHHHHHHHh
Q 003996 156 AFESRVSTLKSIQNALTDANVS-----------IIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 156 ~~~gR~~~~~~l~~~L~~~~~~-----------vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.++|.+...+.+.-.+.....+ -+.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4566666555554444333211 58899999999999999998754
No 476
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.52 E-value=0.34 Score=47.97 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHhhcC--CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 164 LKSIQNALTDA--NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 164 ~~~l~~~L~~~--~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+..|+... ....+.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44566676643 24579999999999999999999864
No 477
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.51 E-value=0.34 Score=52.95 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHhh--cCCeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 157 FESRVSTLKSIQNALT--DANVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 157 ~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455555555555542 234578999999999999999999999864
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.50 E-value=0.44 Score=44.57 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=21.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
.++.|+|+.|+||||++..+..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999777776643
No 479
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.36 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.7
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 480
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.44 E-value=0.2 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999874
No 481
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.41 E-value=0.47 Score=47.30 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=29.2
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
++|+|.|-||+||||+|..++.....+ -..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 578889999999999999999887643 23466666553
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.41 E-value=0.21 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.2
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998753
No 483
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.38 E-value=0.38 Score=51.92 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=52.4
Q ss_pred eEEEEEEeCCCChHHHHHH-HHHHHhhccCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCC--------CCCchhHH---
Q 003996 176 VSIIGVYGMGGIGKTTLVK-EFVRQASENKLFD-RVVFSEVSQTP-DIKKIQGEIAEKLGL--------ELSDEAEY--- 241 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~-~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~--------~~~~~~~~--- 241 (780)
-+-++|.|.+|+|||+||. .+.+... -+ .++++-+++.. .+.++.+++...=.. ..++....
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 3568899999999999964 6666442 45 35778888765 455666666542111 11111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCC
Q 003996 242 --RRASRLYERLKN-ENKILVILDNIW 265 (780)
Q Consensus 242 --~~~~~l~~~l~~-~k~~LlVlDdv~ 265 (780)
...-.+.+++.. ++..|+++||+.
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 112245555553 689999999973
No 484
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.30 E-value=0.44 Score=48.20 Aligned_cols=39 Identities=28% Similarity=0.475 Sum_probs=29.6
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCC
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQ 216 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 216 (780)
.++|+|.|-||+||||+|..++...... -..+.-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4678889999999999999999887643 22456666553
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.25 E-value=0.37 Score=44.86 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 165 KSIQNALTDANVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 165 ~~l~~~L~~~~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
..+.+ +......-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34455 34455677899999999999999998853
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.22 E-value=0.15 Score=54.77 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.4
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999988754
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.12 E-value=0.25 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.05 E-value=0.61 Score=51.73 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=0.0
Q ss_pred EEEEEeCCCChHHHHHHHH-HHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchh-----------------
Q 003996 178 IIGVYGMGGIGKTTLVKEF-VRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEA----------------- 239 (780)
Q Consensus 178 vi~I~G~~GvGKTtLa~~v-~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~----------------- 239 (780)
+++|+|+.|+|||||++.+ +.-...- -...++++... ...-....++.++....+..
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~---~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEE---TPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS---CHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeC---CHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Q ss_pred -------HHHHHHHHHHHHhcCCeEEEEEeCC
Q 003996 240 -------EYRRASRLYERLKNENKILVILDNI 264 (780)
Q Consensus 240 -------~~~~~~~l~~~l~~~k~~LlVlDdv 264 (780)
......++...+..+++-+|++|.+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCH
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.04 E-value=0.38 Score=53.33 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
...+++|+|+.|+|||||++.+......
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4578999999999999999999998764
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.92 E-value=0.22 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=20.8
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998653
No 491
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.90 E-value=0.24 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHh
Q 003996 179 IGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 179 i~I~G~~GvGKTtLa~~v~~~~ 200 (780)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 492
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.89 E-value=0.18 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHH
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998754
No 493
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.88 E-value=0.31 Score=45.23 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 494
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.86 E-value=0.35 Score=50.48 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=57.3
Q ss_pred CCeEEEEEEeCCCChHHHHHHHHHHHhhccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhc
Q 003996 174 ANVSIIGVYGMGGIGKTTLVKEFVRQASENKLFDRVVFSEVSQTPDIKKIQGEIAEKLGLELSDEAEYRRASRLYERLKN 253 (780)
Q Consensus 174 ~~~~vi~I~G~~GvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (780)
....+++|+|+.|+||||+.+.+........ -..++.+.-.-.+..... ..+..+....... ......+...|..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~-~~~v~q~~~~~~~---~~~~~~La~aL~~ 195 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESK-KCLVNQREVHRDT---LGFSEALRSALRE 195 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB---SCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhcc-ccceeeeeecccc---CCHHHHHHHHhhh
Confidence 3445999999999999999999887654320 012222211111100000 0000000000000 1122245555555
Q ss_pred CCeEEEEEeCCCCccCccccCCCCCCCCCCcEEEEEeCChHHH
Q 003996 254 ENKILVILDNIWKHLDLDTVGIPFGNDHEGCRLLLTARDINVL 296 (780)
Q Consensus 254 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v~ 296 (780)
++=+|++|++.+.+.++.+... ...|..|++||...+.+
T Consensus 196 -~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 -DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp -CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred -CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 6788899999866554432222 12355688888765543
No 495
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.85 E-value=0.24 Score=45.87 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHhhc-CCeEEEEEEeCCCChHHHHHHHHHH
Q 003996 167 IQNALTD-ANVSIIGVYGMGGIGKTTLVKEFVR 198 (780)
Q Consensus 167 l~~~L~~-~~~~vi~I~G~~GvGKTtLa~~v~~ 198 (780)
+.+.+.. ....-|+|+|.+|+|||||...+..
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3333333 4567788999999999999988763
No 496
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.82 E-value=0.22 Score=51.82 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCChHHHHHHHHHHHhh
Q 003996 176 VSIIGVYGMGGIGKTTLVKEFVRQAS 201 (780)
Q Consensus 176 ~~vi~I~G~~GvGKTtLa~~v~~~~~ 201 (780)
..+++|+|+.|+|||||.+.++--.+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 46899999999999999999986543
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.78 E-value=0.17 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHH
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQ 199 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~ 199 (780)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.75 E-value=0.23 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHh
Q 003996 177 SIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 177 ~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998753
No 499
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.72 E-value=0.18 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHh
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQA 200 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~ 200 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999987643
No 500
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.68 E-value=0.48 Score=49.40 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.3
Q ss_pred CeEEEEEEeCCCChHHHHHHHHHHHhhc
Q 003996 175 NVSIIGVYGMGGIGKTTLVKEFVRQASE 202 (780)
Q Consensus 175 ~~~vi~I~G~~GvGKTtLa~~v~~~~~~ 202 (780)
+..+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4689999999999999999999876543
Done!