BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003997
(780 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 41/245 (16%)
Query: 47 KKNDAINEEEKASSNDDGKKVVRKTKWG----------PDLSLDASVKRGRAL------A 90
K N ++ + G++ RK WG + L+ +VK + +
Sbjct: 47 KSNSRMDHRPDGYHDGRGRRAYRKHYWGHPTPIEEMLPSQMELETAVKSCMTMEQLELYS 106
Query: 91 YQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQVD--------RELEC---LE 139
R+++I Q+L +G + V SP PQ D RE+ LE
Sbjct: 107 LNVRLEEITQKLRTGDV---------VPHHRERSPSPPPQYDNHGRRLNTREIRYKKKLE 157
Query: 140 LEKQEVIGEILKLNPSYRTPPDYK-PLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRL 198
E+ +I +K+ P +R P DY+ P + V +PVK+YP NF+GL+ GP T K +
Sbjct: 158 DERHRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDM 217
Query: 199 EKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEE-FHISISADSYEKVDAATDLIELL 257
E ++ I + G + K SD +V+ EE H ++ADS +K++ A LI+ +
Sbjct: 218 EAKSGAKIAIRGKGSVKEGK---GRSDPSVRGNMEEDLHCLVTADSEDKINHAIKLIDNV 274
Query: 258 VTSVS 262
+ + +
Sbjct: 275 IQTAA 279
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 88 ALAYQTRVDQIVQQLESGSLEAEENQVPEVAA----QNADQKSPNPQVDRELECLELEKQ 143
AL + RVD+I +++ G +E E + + + K N + R E L+ E+
Sbjct: 94 ALILRLRVDEITKKITIGPIEFTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERH 153
Query: 144 EVIGEILKLNPSYRTPPDYKP--LLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKE 201
+++ ++NP+Y+ P DY+P K + IP+K +P YNF+GLI GP +TQKR+EKE
Sbjct: 154 QLVVTAQQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKE 213
Query: 202 TRTVIKVYGTKADTG---EKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLI-ELL 257
+ I + G + K++ +D E H+ ++AD+ +++D A L+ E L
Sbjct: 214 SGAKIAIRGKGSSRDGKPTKLQFQEND--------ELHVLLTADTVDQLDKAEVLVREFL 265
Query: 258 V 258
+
Sbjct: 266 I 266
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 22/245 (8%)
Query: 69 RKTKWGPD---------LSLDASVKRGRALAYQTRVDQIVQQLESGSL---EAEENQVPE 116
RK++WG + + S + A Q R+D+I ++L SG + E + P
Sbjct: 135 RKSRWGDANDKITIPTAIGANVSAQELDKYAIQVRLDEISRKLRSGDFVPPDRERSPSPP 194
Query: 117 VAAQNADQKSPNPQVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKE----AVVP 172
N +++ +V R + LE E+ ++ LKL+P++R P DY + + V
Sbjct: 195 PTYDNQGRRTNTREV-RYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIKRNQRPTEKVY 253
Query: 173 IPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTY 232
+P+KE+P F GL+ GP +T K +E+++ I + G + V+ +
Sbjct: 254 LPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGS-----VKTGKGKMDADEDE 308
Query: 233 EEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQF 292
EE H ++AD V LI ++ + + + + ++ALN + D
Sbjct: 309 EEMHCVVTADDEASVKKCIKLINQVIETAASTPEGENDHKRNQLRELAALNGTLRDDENQ 368
Query: 293 LVPNT 297
L N
Sbjct: 369 LCKNC 373
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 42/227 (18%)
Query: 88 ALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQK-SPNPQVD-----------REL 135
A R+++I Q+L ++ +V + D+ SP PQ D R
Sbjct: 114 AYTLHLRIEEITQKL----------KIDDVVPADGDRSPSPAPQYDNHGRRVNTREYRYR 163
Query: 136 ECLELEKQEVIGEILKLNPSYRTPPDYK-PLLKEAVVPIPVKEYPGYNFLGLIFGPASDT 194
+ LE E+ ++I + +K P+Y P DY+ P + V +PV +YP NF+GL+ GP +T
Sbjct: 164 KKLEDERHKLIEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNT 223
Query: 195 QKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEE-FHISISADSYEKVDAATDL 253
K++E E+ I + G + K SDA S EE H I AD+ EKV+ A L
Sbjct: 224 LKKMETESGAKIAIRGKGS---VKEGKGRSDAAHSSNQEEDLHCLIMADTEEKVNKAKKL 280
Query: 254 IELLVTSVSG--------------SLAAISTSTLVSGENVSALNQSQ 286
I ++ + + LAA++ TL EN + N Q
Sbjct: 281 IHNIIETAASIPEGQNELKRNQLRELAALN-GTLRDDENQACQNCGQ 326
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 59 SSNDDGKKV---VRKTKWGPDLSLDASV-------------KRGRALAYQTRVDQIVQQL 102
+ +DDG K RK +W + A + ++ A A R+++I QQL
Sbjct: 52 TRHDDGTKRQPGRRKQRWSHGENKVADLLQMPTALTGHLTPEQAEAYAIYYRIEEISQQL 111
Query: 103 ESGSLEAEENQV-----PEVAAQNADQKSPNPQVDRELECLELEKQEVIGEILKLNPSYR 157
G + E++ P+ + K N + R LE E+ +I +L P+YR
Sbjct: 112 RLGDIVPPEDERSPSPPPQYDSMG---KRTNTRDARYTRQLEEERHRLIERAQRLIPNYR 168
Query: 158 TPPDY-KPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTG 216
P DY KP + VV IPV EYP NF+G + G T K++E+E+ I + G +
Sbjct: 169 PPVDYHKPAKTQEVVYIPVNEYPDINFIGQLLGARGKTLKKMEQESGAKICIRGRGSVKQ 228
Query: 217 EKVEISTSDANVQSTYE-EFHISISADSYEKVDAATDLIELLVTSVS 262
K +D QST E + H I ++ EK+ A L++ ++ + +
Sbjct: 229 GK---GRTDIPFQSTAEDDLHCLIISEDEEKIARAVQLVQQVIDTAA 272
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 87 RALAYQTRVDQIVQQLESGSLEAEENQVPEVAA------QNADQKSPNPQVDRELECLEL 140
RA Q +++ + ++L +G L N PE + N++ K N + R + LE
Sbjct: 50 RAYIVQLQIEDLTRKLRTGDLGIPPN--PEDRSPSPEPIYNSEGKRLNTREFRTRKKLEE 107
Query: 141 EKQEVIGEILKLNPSYRTPPDYKP---LLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKR 197
E+ +I E++ LNP ++ P DYKP + + V+ IP EYP NF+GL+ GP +T K
Sbjct: 108 ERHTLITEMVALNPDFKPPADYKPPATRVSDKVM-IPQDEYPEINFVGLLIGPRGNTLKN 166
Query: 198 LEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEE-FHISISADSYEKVDAATDLIEL 256
+EKE I + G K E ++ D + +E H ++A++ E V A + I
Sbjct: 167 IEKECNAKIMIRG-KGSVKEG-KVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRN 224
Query: 257 LV 258
++
Sbjct: 225 IL 226
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 40/226 (17%)
Query: 88 ALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQK-SPNPQVD-----------REL 135
A R+++I Q+L ++ +V + D+ SP PQ D R
Sbjct: 99 AYTLHLRIEEISQKL----------RINDVVPADGDRSPSPPPQYDNFGRRVNTREYRYR 148
Query: 136 ECLELEKQEVIGEILKLNPSYRTPPDYK-PLLKEAVVPIPVKEYPGYNFLGLIFGPASDT 194
+ LE E+ +++ + +K P+Y P DY+ P + V +PV +YP NF+GL+ GP +T
Sbjct: 149 KRLEDERHKLVEKAMKTIPNYHPPSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNT 208
Query: 195 QKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLI 254
K++E E+ I + G + K + A+ Q E+ H I AD+ EKV+ A L+
Sbjct: 209 LKKMEAESGAKIAIRGKGSVKEGKGRSDAAHASNQE--EDLHCLIMADTEEKVNKAKKLV 266
Query: 255 ELLVTSVSG--------------SLAAISTSTLVSGENVSALNQSQ 286
++ + + LAA++ TL EN + N Q
Sbjct: 267 HNVIETAASIPEGQNELKRNQLRELAALN-GTLRDDENQACQNCGQ 311
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 87 RALAYQTRVDQIVQQLESGSLEAEENQVPEVAA------QNADQKSPNPQVDRELECLEL 140
RA Q +++ + ++L +G L N PE + N++ K N + R + LE
Sbjct: 50 RAYIVQLQIEDLTRKLRTGDLGIPPN--PEDRSPSPEPIYNSEGKRLNTREFRTRKKLEE 107
Query: 141 EKQEVIGEILKLNPSYRTPPDYKP---LLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKR 197
E+ +I E++ LNP ++ P DYKP + + V+ IP EYP NF+GL+ GP +T K
Sbjct: 108 ERHNLITEMVALNPDFKPPADYKPPATRVSDKVM-IPQDEYPEINFVGLLIGPRGNTLKN 166
Query: 198 LEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEE-FHISISADSYEKVDAATDLIEL 256
+EKE I + G K E ++ D + +E H ++A++ E V A + I
Sbjct: 167 IEKECNAKIMIRG-KGSVKEG-KVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRN 224
Query: 257 LV 258
++
Sbjct: 225 IL 226
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 51/274 (18%)
Query: 56 EKASSNDDGKKVVRKTKWGPDLSLDASVKRG-----------------RALAYQTRVDQI 98
++ SN+DG + R+++WG DAS K A R+++I
Sbjct: 119 DRGDSNEDGPRK-RRSRWG-----DASAKVNVPGMPVAVMGNVSQTELDNYAIHVRLEEI 172
Query: 99 VQQLESGSLEAEENQVPEVAAQNADQKSPNPQVD--------RELEC---LELEKQEVIG 147
++L +G + E Q SP PQ D REL LE E+ +I
Sbjct: 173 NRKLRTGDVVPPEGQRS---------PSPTPQYDAYGRRTNTRELRYRKKLEDERTRLID 223
Query: 148 EILKLNPSYRTPPDYKPLLK---EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRT 204
+K +P++R P D++ + V IPVKE+P NF GL+ GP ++ K++E+E+
Sbjct: 224 RAVKSDPNFRPPVDFQHKRGSRPQDKVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGA 283
Query: 205 VIKVYGTKADTGEKVEISTSDANV-QSTYEEFHISISADSYEKVDAATDLIELLVTSVSG 263
I + G G E N Q +E H I+AD KV LI ++ + +
Sbjct: 284 KISIRG----KGSVKEGKGRAGNFPQDEEDELHCLITADDESKVKTCVALINKVIETAAS 339
Query: 264 SLAAISTSTLVSGENVSALNQSQGDGAQFLVPNT 297
+ + +++LN + D L N
Sbjct: 340 TPEGENDHKRNQLRELASLNGTLRDDENQLCQNC 373
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 51/274 (18%)
Query: 56 EKASSNDDGKKVVRKTKWGPDLSLDASVKRG-----------------RALAYQTRVDQI 98
++ SN+DG + R+++WG DAS K A R+++I
Sbjct: 119 DRGDSNEDGPRK-RRSRWG-----DASAKVNVPGMPVAVMGNVSQTELDNYAIHVRLEEI 172
Query: 99 VQQLESGSLEAEENQVPEVAAQNADQKSPNPQVD--------RELEC---LELEKQEVIG 147
++L +G + E Q SP PQ D REL LE E+ +I
Sbjct: 173 NRKLRTGDVVPPEGQRS---------PSPTPQYDAYGRRTNTRELRYRKKLEDERTRLID 223
Query: 148 EILKLNPSYRTPPDYKPLLK---EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRT 204
+K +P++R P D++ + V IPVKE+P NF GL+ GP ++ K++E+E+
Sbjct: 224 RAVKSDPNFRPPVDFQHKRGSRPQDKVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGA 283
Query: 205 VIKVYGTKADTGEKVEISTSDANV-QSTYEEFHISISADSYEKVDAATDLIELLVTSVSG 263
I + G G E N Q +E H I+AD KV LI ++ + +
Sbjct: 284 KISIRG----KGSVKEGKGRAGNFPQDEEDELHCLITADDESKVKTCVALINKVIETAAS 339
Query: 264 SLAAISTSTLVSGENVSALNQSQGDGAQFLVPNT 297
+ + +++LN + D L N
Sbjct: 340 TPEGENDHKRNQLRELASLNGTLRDDENQLCQNC 373
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 90 AYQT--RVDQIVQQLESGSLEAEENQVPEVA---AQNADQKSPNPQVDRELECLELEKQE 144
AYQ R+ +I +L + L ++ ++ ++ K N + R + LE E+
Sbjct: 66 AYQVMYRIQEITIKLRTNDLNPPTSRYRSLSPPPVYDSQGKRTNTREHRYRKKLEEERHR 125
Query: 145 VIGEILKLNPSYRTPPDYK-PLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET- 202
++ LK+ P + P DY+ P + IP+ +YP NF+GL+ GP +T K+L++++
Sbjct: 126 LVEIALKMIPHFIAPDDYRRPSKFQDKYYIPINDYPEINFVGLLLGPRGNTLKQLQQQSG 185
Query: 203 -RTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 258
+ VI+ G+ + ++ N+ E H ISAD+ EK+ + +E ++
Sbjct: 186 CKIVIRGRGSVKEGKAATDLPKGAMNMN---EPLHCVISADTEEKIPLGINAVESII 239
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 128 NPQVDRELECLELEKQEVIGEILKLNPSYRTPPDYK-PLLKEAVVPIPVKEYPGYNFLGL 186
N + R E LE E+ E++ +Y P +Y+ P + +PVK+YP NF+G
Sbjct: 108 NTRERRVTEALEKERHELVELAASSIKNYMIPSNYRRPSRTVERLYVPVKDYPDINFVGF 167
Query: 187 IFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDA--------NVQSTYEEFHIS 238
+ GP +T K+L++++ +++ G G E +SD ++Q ++ H+
Sbjct: 168 LIGPRGNTLKKLQEDSGARLQIRG----KGSVKEGKSSDGFGSSQTGTDIQ---DDLHVL 220
Query: 239 ISADSYEKVDAATDLIELLVTSV 261
I+ADS K+ A L+ ++ +
Sbjct: 221 ITADSPLKISKAVKLVNEIIDKL 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,658,717
Number of Sequences: 539616
Number of extensions: 17432166
Number of successful extensions: 73963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 2946
Number of HSP's that attempted gapping in prelim test: 51874
Number of HSP's gapped (non-prelim): 14155
length of query: 780
length of database: 191,569,459
effective HSP length: 125
effective length of query: 655
effective length of database: 124,117,459
effective search space: 81296935645
effective search space used: 81296935645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)