Query 003997
Match_columns 780
No_of_seqs 252 out of 777
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 99.9 1.2E-28 4.2E-33 233.6 6.9 109 168-276 3-122 (140)
2 4fxw_B Splicing factor 1; UHM, 99.9 1E-27 3.5E-32 223.3 9.6 101 65-165 6-124 (124)
3 1k1g_A SF1-BO isoform; splicin 99.9 5.3E-27 1.8E-31 219.6 9.2 92 167-260 7-99 (131)
4 2yqr_A KIAA0907 protein; struc 99.9 1.1E-25 3.7E-30 208.2 8.1 96 167-269 12-108 (119)
5 2opv_A KHSRP protein; KH domai 99.3 6E-12 2.1E-16 108.6 8.2 72 167-260 14-85 (85)
6 3u1k_A Polyribonucleotide nucl 99.3 4.7E-12 1.6E-16 143.8 9.0 94 135-259 536-630 (630)
7 1x4m_A FAR upstream element bi 99.2 1.2E-11 4.1E-16 108.8 6.5 79 164-264 12-90 (94)
8 1we8_A Tudor and KH domain con 99.2 1.2E-11 4.3E-16 110.5 6.2 82 158-263 8-89 (104)
9 2hh3_A KH-type splicing regula 99.2 2E-11 7E-16 110.4 6.0 76 167-266 11-86 (106)
10 4aid_A Polyribonucleotide nucl 99.2 1.5E-11 5E-16 141.7 5.0 100 135-265 539-639 (726)
11 2ctk_A Vigilin; K homology typ 99.1 1.7E-11 5.9E-16 110.3 4.4 80 159-266 11-90 (104)
12 1zzk_A Heterogeneous nuclear r 99.1 5.3E-11 1.8E-15 102.0 6.7 75 167-265 7-81 (82)
13 2hh2_A KH-type splicing regula 99.1 6.7E-11 2.3E-15 106.6 7.3 78 168-266 8-85 (107)
14 1x4n_A FAR upstream element bi 99.1 4.4E-11 1.5E-15 104.8 5.7 73 167-263 15-87 (92)
15 1dtj_A RNA-binding neurooncolo 99.1 1.6E-10 5.6E-15 96.9 7.8 72 168-260 4-75 (76)
16 3krm_A Insulin-like growth fac 99.1 2.8E-10 9.7E-15 106.9 9.5 104 135-264 57-160 (163)
17 2p2r_A Poly(RC)-binding protei 99.1 1E-10 3.4E-15 98.7 5.7 71 166-260 4-74 (76)
18 1wvn_A Poly(RC)-binding protei 99.1 1E-10 3.5E-15 100.1 5.8 70 168-261 7-76 (82)
19 1vig_A Vigilin; RNA-binding pr 99.1 1.3E-10 4.6E-15 97.5 6.1 66 168-259 6-71 (71)
20 1j5k_A Heterogeneous nuclear r 99.1 8.5E-11 2.9E-15 102.3 4.7 75 167-265 14-88 (89)
21 2cte_A Vigilin; K homology typ 99.1 8.1E-11 2.8E-15 103.7 4.6 70 168-263 18-87 (94)
22 2jvz_A KH type-splicing, FAR u 99.0 2.4E-10 8.3E-15 106.8 6.9 106 135-264 57-164 (164)
23 2ctl_A Vigilin; K homology typ 99.0 1.9E-10 6.5E-15 102.2 5.8 73 168-263 18-90 (97)
24 2cpq_A FragIle X mental retard 99.0 1.2E-10 4.3E-15 103.6 4.6 68 167-263 15-84 (91)
25 2ctm_A Vigilin; K homology typ 99.0 1.7E-10 5.7E-15 102.3 5.3 75 168-267 18-92 (95)
26 2axy_A Poly(RC)-binding protei 99.0 3.4E-10 1.1E-14 95.4 5.8 68 167-260 5-72 (73)
27 1ec6_A RNA-binding protein NOV 99.0 1.8E-10 6.1E-15 99.6 4.0 77 168-265 4-80 (87)
28 2jzx_A Poly(RC)-binding protei 99.0 7E-10 2.4E-14 103.9 8.1 103 135-260 56-159 (160)
29 2ctj_A Vigilin; K homology typ 99.0 2.6E-10 8.8E-15 101.5 4.0 72 168-265 18-90 (95)
30 2dgr_A Ring finger and KH doma 98.9 7.9E-10 2.7E-14 96.2 4.1 66 167-259 10-75 (83)
31 2e3u_A PH-DIM2P, hypothetical 98.8 1.4E-09 4.9E-14 109.6 5.0 94 140-264 3-109 (219)
32 1j4w_A FUSE binding protein; s 98.7 3.7E-08 1.3E-12 93.7 10.3 70 168-258 105-174 (174)
33 3cdi_A Polynucleotide phosphor 98.7 3.1E-09 1.1E-13 122.6 3.3 99 135-264 529-628 (723)
34 2jvz_A KH type-splicing, FAR u 98.7 2.8E-08 9.5E-13 92.9 8.3 74 168-263 3-76 (164)
35 1j4w_A FUSE binding protein; s 98.6 2.4E-08 8.3E-13 95.0 4.9 72 168-263 4-75 (174)
36 2anr_A Neuro-oncological ventr 98.6 3.8E-08 1.3E-12 93.8 6.3 72 167-260 104-175 (178)
37 1e3p_A Guanosine pentaphosphat 98.6 6E-09 2.1E-13 120.7 -0.4 93 135-258 568-660 (757)
38 2jzx_A Poly(RC)-binding protei 98.5 9.8E-08 3.4E-12 89.4 5.0 68 167-260 5-72 (160)
39 3krm_A Insulin-like growth fac 98.5 1.5E-07 5.2E-12 88.3 5.9 71 168-261 4-74 (163)
40 2anr_A Neuro-oncological ventr 98.5 1.3E-07 4.4E-12 90.1 5.5 75 168-263 7-81 (178)
41 2qnd_A FMR1 protein; KH domain 97.9 9.1E-06 3.1E-10 76.5 5.7 73 169-261 69-143 (144)
42 2e3u_A PH-DIM2P, hypothetical 97.9 8E-06 2.7E-10 82.4 5.1 54 183-261 139-192 (219)
43 1tua_A Hypothetical protein AP 97.7 1.9E-05 6.4E-10 78.5 4.5 53 183-260 108-160 (191)
44 2ctf_A Vigilin; K homology typ 97.7 3.3E-05 1.1E-09 69.4 5.5 69 167-264 27-96 (102)
45 3n89_A Defective in GERM LINE 97.2 0.00046 1.6E-08 74.9 7.4 96 135-258 161-259 (376)
46 3n89_A Defective in GERM LINE 97.1 0.00072 2.5E-08 73.3 7.9 75 162-258 25-104 (376)
47 1tua_A Hypothetical protein AP 96.7 0.0017 5.8E-08 64.6 5.4 68 168-263 5-76 (191)
48 2qnd_A FMR1 protein; KH domain 96.6 0.0012 4.2E-08 62.1 3.9 60 168-254 5-64 (144)
49 3v69_A Protein filia; RNA-bind 95.3 0.023 8E-07 54.3 6.2 80 152-259 44-123 (140)
50 2z0s_A Probable exosome comple 82.8 1.7 5.9E-05 43.8 6.2 53 182-257 157-209 (235)
51 2cxc_A NUSA; transcription ter 76.7 1.2 4.2E-05 42.5 2.7 30 182-211 45-74 (144)
52 2jpi_A Hypothetical protein; a 74.6 3.1 0.00011 38.5 4.7 66 192-261 36-103 (118)
53 2ba0_A Archeal exosome RNA bin 72.6 3 0.0001 42.1 4.5 51 182-255 145-197 (229)
54 1wjw_A Phosphoacetylglucosamin 57.6 23 0.00077 32.0 6.7 51 193-261 45-96 (112)
55 1go3_E DNA-directed RNA polyme 54.7 5.4 0.00019 38.3 2.3 36 168-212 8-55 (187)
56 2je6_I RRP4, exosome complex R 53.5 1.3 4.6E-05 45.3 -2.3 31 182-212 164-194 (251)
57 1k0r_A NUSA; two component arr 52.8 4.6 0.00016 44.0 1.5 42 169-211 237-279 (366)
58 2nn6_G Exosome complex exonucl 51.8 4.3 0.00015 42.7 1.1 53 182-257 219-271 (289)
59 3kax_A Aminotransferase, class 47.7 97 0.0033 30.8 10.1 23 236-258 359-382 (383)
60 2asb_A Transcription elongatio 46.5 6.1 0.00021 41.0 1.2 42 169-211 114-156 (251)
61 1qz9_A Kynureninase; kynurenin 45.0 44 0.0015 33.9 7.3 25 236-260 373-401 (416)
62 3ly1_A Putative histidinol-pho 42.7 1.8E+02 0.0061 28.6 11.1 26 235-260 326-351 (354)
63 3szp_A Transcriptional regulat 42.6 16 0.00054 34.5 3.3 20 193-212 34-53 (291)
64 2esn_A Probable transcriptiona 41.5 17 0.00056 35.2 3.3 19 193-211 43-61 (310)
65 3isp_A HTH-type transcriptiona 37.8 23 0.0008 34.1 3.8 20 193-212 39-58 (303)
66 1hh2_P NUSA, N utilization sub 36.8 13 0.00044 40.1 1.9 42 169-211 233-275 (344)
67 2ja9_A Exosome complex exonucl 36.5 27 0.00091 34.1 3.9 58 170-256 94-152 (175)
68 3eth_A Phosphoribosylaminoimid 34.8 37 0.0013 35.9 5.0 51 195-260 291-341 (355)
69 3hhg_A Transcriptional regulat 34.1 19 0.00064 34.6 2.4 20 193-212 36-55 (306)
70 3f9t_A TDC, L-tyrosine decarbo 30.7 2.3E+02 0.0079 27.9 9.7 24 236-259 370-396 (397)
71 3fxq_A LYSR type regulator of 30.7 27 0.00094 33.8 3.0 20 193-212 35-54 (305)
72 3k5i_A Phosphoribosyl-aminoimi 30.1 59 0.002 34.4 5.6 50 195-258 349-398 (403)
73 3jtx_A Aminotransferase; NP_28 30.0 1.8E+02 0.0061 29.2 8.9 25 235-259 371-396 (396)
74 3fdb_A Beta C-S lyase, putativ 29.8 2.3E+02 0.0079 28.1 9.6 93 135-260 280-375 (377)
75 3qgu_A LL-diaminopimelate amin 29.1 1.3E+02 0.0045 31.1 7.9 25 236-260 414-439 (449)
76 1ais_A TBP, protein (tata-bind 27.6 2.3E+02 0.0077 27.8 8.8 62 92-153 23-91 (182)
77 3dzz_A Putative pyridoxal 5'-p 27.5 2.1E+02 0.007 28.5 8.8 26 236-261 363-389 (391)
78 3e9k_A Kynureninase; kynurenin 27.5 2E+02 0.0069 30.0 9.1 26 236-261 432-461 (465)
79 3kki_A CAI-1 autoinducer synth 27.5 2.2E+02 0.0077 28.9 9.2 26 235-260 375-403 (409)
80 2pt7_G HP1451, hypothetical pr 26.2 15 0.00052 35.4 0.2 21 182-202 42-62 (152)
81 3ccd_A Phosphocarrier protein 25.2 95 0.0032 26.6 5.0 62 193-259 20-82 (85)
82 2cxc_A NUSA; transcription ter 25.1 13 0.00044 35.5 -0.5 37 168-210 104-140 (144)
83 3gpk_A PPIC-type peptidyl-prol 24.8 20 0.00069 32.3 0.8 42 235-278 11-52 (112)
84 1ixc_A CBNR, LYSR-type regulat 24.7 17 0.0006 34.5 0.3 20 193-212 34-53 (294)
85 3nnk_A Ureidoglycine-glyoxylat 24.7 3.3E+02 0.011 27.2 9.8 28 236-263 361-392 (411)
86 3rq1_A Aminotransferase class 24.0 2.9E+02 0.0098 28.1 9.2 26 236-261 388-415 (418)
87 2z8u_A Tata-box-binding protei 23.9 3.1E+02 0.011 27.0 9.1 62 92-153 27-95 (188)
88 3l8a_A METC, putative aminotra 23.7 2.8E+02 0.0097 28.4 9.2 24 236-259 396-420 (421)
89 1fg7_A Histidinol phosphate am 22.9 5E+02 0.017 26.0 10.6 23 236-258 333-355 (356)
90 3mz1_A Putative transcriptiona 22.8 18 0.00061 34.2 0.0 20 193-212 31-50 (300)
91 4hhu_A OR280; engineered prote 22.8 1.5E+02 0.005 28.2 6.1 83 135-254 13-104 (170)
92 3fzv_A Probable transcriptiona 22.8 24 0.00081 33.8 0.9 18 193-210 37-54 (306)
93 3fvs_A Kynurenine--oxoglutarat 22.6 2.2E+02 0.0075 28.9 8.0 25 236-260 396-421 (422)
94 2ch1_A 3-hydroxykynurenine tra 22.6 1.8E+02 0.0063 29.0 7.4 28 236-263 354-385 (396)
95 3qoy_A 50S ribosomal protein L 22.6 72 0.0025 32.8 4.4 43 169-211 116-170 (242)
96 4h51_A Aspartate aminotransfer 22.4 1E+02 0.0035 33.1 5.8 27 236-262 392-418 (420)
97 4dq6_A Putative pyridoxal phos 22.3 2.6E+02 0.0089 27.8 8.4 23 236-258 367-390 (391)
98 2h9b_A HTH-type transcriptiona 22.3 19 0.00063 35.3 0.0 20 193-212 34-53 (312)
99 3ezs_A Aminotransferase ASPB; 21.9 2.1E+02 0.0071 28.5 7.6 26 235-260 348-374 (376)
100 2dr1_A PH1308 protein, 386AA l 21.9 3.4E+02 0.012 26.8 9.1 26 236-261 351-379 (386)
101 2z9v_A Aspartate aminotransfer 21.6 2.5E+02 0.0087 27.9 8.2 26 236-261 342-371 (392)
102 3ffh_A Histidinol-phosphate am 21.2 5.2E+02 0.018 25.5 10.3 24 235-258 340-363 (363)
103 3isl_A Purine catabolism prote 21.1 2.3E+02 0.0079 28.4 7.7 27 236-262 361-391 (416)
104 3ele_A Amino transferase; RER0 20.9 3.7E+02 0.013 26.9 9.3 25 236-260 370-395 (398)
105 3kgw_A Alanine-glyoxylate amin 20.2 2.8E+02 0.0097 27.4 8.1 26 236-261 359-388 (393)
106 2h98_A HTH-type transcriptiona 20.1 22 0.00075 35.1 0.0 20 193-212 34-53 (313)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.95 E-value=1.2e-28 Score=233.57 Aligned_cols=109 Identities=28% Similarity=0.470 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhccc-CCCCccCCCCceEEEEEecCHH-
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEIST-SDANVQSTYEEFHISISADSYE- 245 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~-~Dg~~~~~~EpLHVlIsAd~~E- 245 (780)
.+|||||+++||+|||||+||||||+|+|+||+||||||.||||||+|++|+|... .+..+++++|||||+|+|++.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 68999999999999999999999999999999999999999999999999887643 3334889999999999998875
Q ss_pred ----HHHHHHHHHHhcccccccchhhh-----cccccccc
Q 003997 246 ----KVDAATDLIELLVTSVSGSLAAI-----STSTLVSG 276 (780)
Q Consensus 246 ----kVdkAvelIE~LL~pVevg~~a~-----~~~~~v~g 276 (780)
+|++|+++|+.||.++.++...+ .++|.++|
T Consensus 83 ~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNG 122 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNG 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSST
T ss_pred hHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcC
Confidence 99999999999999987665433 44566665
No 2
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=99.94 E-value=1e-27 Score=223.29 Aligned_cols=101 Identities=24% Similarity=0.459 Sum_probs=79.8
Q ss_pred CcccccCCCCCCCCCc------------hh--hhhhhHHHHHHHHHHHHHHHhhCCCccCCCCCCCCCCCCCCCCCCCCc
Q 003997 65 KKVVRKTKWGPDLSLD------------AS--VKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQ 130 (780)
Q Consensus 65 ~~rkRKSRWgpdl~~d------------~~--v~~~~a~A~QlRIeeIt~KL~tg~l~~~~~e~s~SP~P~p~yds~GkR 130 (780)
++||||||||.+...+ +. .++.++|++|+|||||++||++|+++++.+++.+||+|+|+||+.|+|
T Consensus 6 ~~~~r~srW~~~~~~~k~~ip~~pt~ip~~Lt~eq~~ay~~~~RieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G~R 85 (124)
T 4fxw_B 6 SKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKR 85 (124)
T ss_dssp ------CCBCCC--------CCSCSBCCSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTSCB
T ss_pred cccccccccCCCcccccccCCCCCeecCCCCCHHHHHHHHHHhhHHHHHHHHhcCCcCCCCCcccCCCCCCCccCccccc
Confidence 5788999999763211 11 257789999999999999999999998867778899999999999999
Q ss_pred hhHH----HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 003997 131 VDRE----LECLELEKQEVIGEILKLNPSYRTPPDYKPL 165 (780)
Q Consensus 131 ~NTr----RekLEeER~~IIeemlKliP~fRPPsDYkP~ 165 (780)
+||| |++||+|||+||++|+++||.|++|+||||+
T Consensus 86 ~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DYkpp 124 (124)
T 4fxw_B 86 LNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPP 124 (124)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC----
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCCCCC
Confidence 9994 9999999999999999999999999999974
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.94 E-value=5.3e-27 Score=219.63 Aligned_cols=92 Identities=32% Similarity=0.502 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCC-ccCCCCceEEEEEecCHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN-VQSTYEEFHISISADSYE 245 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~-~~~~~EpLHVlIsAd~~E 245 (780)
..+|||||+++||+|||||+||||||+|||+||+||||||.|||+||++++|.+ +.++. +.+++|+|||+|+|++++
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~--~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG--RKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS--SCCCCCSCCSSCCEEEEEEESSHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc--ccccccccccCCCeEEEEEECCHH
Confidence 479999999999999999999999999999999999999999999999987765 44555 888999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 003997 246 KVDAATDLIELLVTS 260 (780)
Q Consensus 246 kVdkAvelIE~LL~p 260 (780)
+|++|+++|+.||.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 4
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=208.17 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=87.1
Q ss_pred cEEEEEcCCC-CCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHH
Q 003997 167 KEAVVPIPVK-EYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYE 245 (780)
Q Consensus 167 k~~KIyIPvk-eyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~E 245 (780)
..+|||||++ +||+|||||+||||||+|||+||+||||||.|||+||++.+. ...++++|+|||+|+|++.+
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~-------~~~~e~~e~l~V~I~a~~~e 84 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEP-------ASGREAFEPMYIYISHPKPE 84 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCT-------TTSSCCSSBCEEEEEESSHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccc-------ccccccCCCcEEEEEeCCHH
Confidence 4799999999 699999999999999999999999999999999999976322 22457899999999999999
Q ss_pred HHHHHHHHHHhcccccccchhhhc
Q 003997 246 KVDAATDLIELLVTSVSGSLAAIS 269 (780)
Q Consensus 246 kVdkAvelIE~LL~pVevg~~a~~ 269 (780)
+|++|+++|++||.++.+++..|.
T Consensus 85 ~i~~A~~~Ie~Ll~~v~~~~~~~~ 108 (119)
T 2yqr_A 85 GLAAAKKLCENLLQTVHAEYSRFV 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHH
Confidence 999999999999999999988764
No 5
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=108.57 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
+..+|.||. +++|+|||++|+|||+|+++|||+|.|..+|... ...+-.|.|+| +.++
T Consensus 14 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---------------~~~er~v~I~G-~~~~ 71 (85)
T 2opv_A 14 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---------------TNVDKPLRIIG-DPYK 71 (85)
T ss_dssp EEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---------------TTSCEEEEEEE-CHHH
T ss_pred EEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---------------CCCceEEEEEe-CHHH
Confidence 578999998 5999999999999999999999999999876311 12345799999 9999
Q ss_pred HHHHHHHHHhcccc
Q 003997 247 VDAATDLIELLVTS 260 (780)
Q Consensus 247 VdkAvelIE~LL~p 260 (780)
+++|+++|+.|+.+
T Consensus 72 v~~A~~~I~~i~~e 85 (85)
T 2opv_A 72 VQQACEMVMDILRE 85 (85)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 6
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=143.85 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCcc
Q 003997 135 LECLELEKQEVIGEILKLNPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 213 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRP-PsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS 213 (780)
.+..++.|.+|++.|.+.+..+|. .++|+|. +.+|.||. ++||.||||+|+|||+|++||||+|.|.++|
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~--~~~~~I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G- 606 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRASRKENGPV--VETVQVPL------SKRAKFVGPGGYNLKKLQAETGVTISQVDEE- 606 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCE--EEEEECCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCe--EEEEEeCh------hHhheeECCCChhHHHHHHHHCCEEEEcCCc-
Confidence 567778899999999999999987 7788887 99999999 6999999999999999999999999999776
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhccc
Q 003997 214 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVT 259 (780)
Q Consensus 214 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~ 259 (780)
.|.|+|.|.+++++|+++|+.|++
T Consensus 607 ----------------------~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 607 ----------------------TFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp ----------------------EEEEEESSHHHHHHHHHHTTC---
T ss_pred ----------------------EEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999874
No 7
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.21 E-value=1.2e-11 Score=108.83 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=66.5
Q ss_pred CCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecC
Q 003997 164 PLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADS 243 (780)
Q Consensus 164 P~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~ 243 (780)
|-....+|.||. +++|+|||.+|+|||+|+++|||+|.|..++... ..++-.|.|++ +
T Consensus 12 p~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---------------~~~~r~v~I~G-~ 69 (94)
T 1x4m_A 12 PGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---------------TGADKPLRITG-D 69 (94)
T ss_dssp CCCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---------------SCSCEEEEEEE-C
T ss_pred CCcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---------------CCCceEEEEEe-C
Confidence 444578999998 6999999999999999999999999999876311 12345799999 8
Q ss_pred HHHHHHHHHHHHhcccccccc
Q 003997 244 YEKVDAATDLIELLVTSVSGS 264 (780)
Q Consensus 244 ~EkVdkAvelIE~LL~pVevg 264 (780)
.+++++|+++|+.+|.+.+++
T Consensus 70 ~~~v~~A~~~I~~~i~~~~~~ 90 (94)
T 1x4m_A 70 PYKVQQAKEMVLELIRDQGSG 90 (94)
T ss_dssp TTTHHHHHHHHHHHHCCCSSC
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999987754
No 8
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.20 E-value=1.2e-11 Score=110.51 Aligned_cols=82 Identities=21% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEE
Q 003997 158 TPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHI 237 (780)
Q Consensus 158 PPsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHV 237 (780)
..++|.|. ..+|.||. ++||+|||.+|+|||+|+++|||+|.|..+... ...++-.|
T Consensus 8 ~~s~~ap~--~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---------------~~~~~~~V 64 (104)
T 1we8_A 8 ILTENTPV--FEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEG---------------TLLLSRLI 64 (104)
T ss_dssp CCSSSCEE--EEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---------------SSSSEEEE
T ss_pred ccCCCCCE--EEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---------------CCCCcceE
Confidence 35566664 88999999 699999999999999999999999999876411 01245689
Q ss_pred EEEecCHHHHHHHHHHHHhccccccc
Q 003997 238 SISADSYEKVDAATDLIELLVTSVSG 263 (780)
Q Consensus 238 lIsAd~~EkVdkAvelIE~LL~pVev 263 (780)
.|+|.++ .+++|+++|+.+|.+...
T Consensus 65 ~I~G~~~-~v~~A~~~I~~~i~e~~~ 89 (104)
T 1we8_A 65 KISGTQK-EVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp EEEEEHH-HHHHHHHHHHHHHHHHHH
T ss_pred EEEcCHH-HHHHHHHHHHHHHhhChH
Confidence 9999776 799999999999975443
No 9
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=110.36 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
+..+|.||. ++||+|||.+|+|||+|+++|||||.|..++. ...+-.|.|+++ .|+
T Consensus 11 ~~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----------------~~~er~V~I~G~-~e~ 66 (106)
T 2hh3_A 11 GGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----------------TGPEKIAHIMGP-PDR 66 (106)
T ss_dssp -CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----------------SSSEEEEEEESS-HHH
T ss_pred eEEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----------------CCceeEEEEEeC-HHH
Confidence 468999999 59999999999999999999999999986531 122348999986 999
Q ss_pred HHHHHHHHHhcccccccchh
Q 003997 247 VDAATDLIELLVTSVSGSLA 266 (780)
Q Consensus 247 VdkAvelIE~LL~pVevg~~ 266 (780)
+++|+++|++||.+.+++..
T Consensus 67 v~~A~~~I~~ii~~~~~g~~ 86 (106)
T 2hh3_A 67 CEHAARIINDLLQSLRSGPP 86 (106)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhccccCCC
Confidence 99999999999998887644
No 10
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.15 E-value=1.5e-11 Score=141.70 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCcc
Q 003997 135 LECLELEKQEVIGEILKLNPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 213 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRP-PsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS 213 (780)
.+..+++|.+|++.|.+.+...|. .++|+|. +.++.|+. ++||.||||+|+|||+|++||||+|.|.++|
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~--~~~~~i~~------~ki~~vig~gg~~i~~i~~~tg~~idi~ddG- 609 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVGDFAPK--IETINIPT------DKIREVIGSGGKVIREIVATTGAKVDINDDG- 609 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCe--EEEEeCCH------HHHHhhcCCCchhHHHHHHHHCCceeEECCc-
Confidence 567778899999999999999987 7788887 89999999 5999999999999999999999999999876
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccccccch
Q 003997 214 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSL 265 (780)
Q Consensus 214 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pVevg~ 265 (780)
.|.|.+.|.+++++|+++|+.|+...++|.
T Consensus 610 ----------------------~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~ 639 (726)
T 4aid_A 610 ----------------------VVKVSASDGAKIKAAIDWIKSITDEAEVGK 639 (726)
T ss_dssp --------------------------CCSCHHHHHHHHHC------------
T ss_pred ----------------------eEEEEeCCHHHHHHHHHHHHHHhhhhcCCc
Confidence 688999999999999999999998877764
No 11
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=1.7e-11 Score=110.26 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=68.2
Q ss_pred CCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEE
Q 003997 159 PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHIS 238 (780)
Q Consensus 159 PsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVl 238 (780)
..+|.|. .++|.||. +++|+|||++|+|||+|++||||+|.|...|.. .-.|.
T Consensus 11 i~~~ap~--~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~-------------------~~~V~ 63 (104)
T 2ctk_A 11 LEALVPV--TIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ-------------------SDIIA 63 (104)
T ss_dssp CCCSSCE--EEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT-------------------CCEEE
T ss_pred HHhhCCE--EEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCCC-------------------cceEE
Confidence 4566664 89999999 699999999999999999999999999887631 12799
Q ss_pred EEecCHHHHHHHHHHHHhcccccccchh
Q 003997 239 ISADSYEKVDAATDLIELLVTSVSGSLA 266 (780)
Q Consensus 239 IsAd~~EkVdkAvelIE~LL~pVevg~~ 266 (780)
|+|.+ +++++|+++|+.|+.+.+.+..
T Consensus 64 I~G~~-e~v~~A~~~I~~i~~e~e~~~~ 90 (104)
T 2ctk_A 64 ITGLA-ANLDRAKAGLLERVKELQAEQE 90 (104)
T ss_dssp EEECH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCH-HHHHHHHHHHHHHHhhHHHhHH
Confidence 99985 9999999999999998876654
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.14 E-value=5.3e-11 Score=102.04 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...+|.||. +++|+|||++|+|||+|+++|||+|.|...-. ..++-.|.|+| +.+.
T Consensus 7 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~-----------------~~~~~~v~I~G-~~~~ 62 (82)
T 1zzk_A 7 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPLE-----------------GSEDRIITITG-TQDQ 62 (82)
T ss_dssp EEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCTTS-----------------CSSEEEEEEEE-CHHH
T ss_pred EEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCCCC-----------------CCCceEEEEEe-CHHH
Confidence 367899999 59999999999999999999999999986410 01234799999 5999
Q ss_pred HHHHHHHHHhcccccccch
Q 003997 247 VDAATDLIELLVTSVSGSL 265 (780)
Q Consensus 247 VdkAvelIE~LL~pVevg~ 265 (780)
+++|+++|++++.+...++
T Consensus 63 v~~A~~~I~~~i~~~~g~~ 81 (82)
T 1zzk_A 63 IQNAQYLLQNSVKQYSGKF 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 9999999999998765554
No 13
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=6.7e-11 Score=106.57 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. ++||+|||.+|+|||+|+++|||+|.|..+.... ....+-.|.|++ +.|.|
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~--------------~~~~~r~V~I~G-~~e~v 66 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN--------------GDPNFKLFIIRG-SPQQI 66 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT--------------CCTTEEEEEEES-CHHHH
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC--------------CCCCceEEEEEC-CHHHH
Confidence 67999998 6999999999999999999999999998763110 112345799999 99999
Q ss_pred HHHHHHHHhcccccccchh
Q 003997 248 DAATDLIELLVTSVSGSLA 266 (780)
Q Consensus 248 dkAvelIE~LL~pVevg~~ 266 (780)
++|+++|+++|.+...-+.
T Consensus 67 ~~A~~~I~~~i~e~~~~~~ 85 (107)
T 2hh2_A 67 DHAKQLIEEKIEGPLCPVG 85 (107)
T ss_dssp HHHHHHHHHHSCSCCCEEC
T ss_pred HHHHHHHHHHHhcccccCC
Confidence 9999999999987754333
No 14
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.12 E-value=4.4e-11 Score=104.83 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...+|+||. ++||+|||.+|+|||+|+++|||+|.|.++.. ...+-.|.|++. .+.
T Consensus 15 ~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----------------g~~~r~v~I~G~-~e~ 70 (92)
T 1x4n_A 15 MTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----------------GLPERSCMLTGT-PES 70 (92)
T ss_dssp EEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----------------TCSEEEEEEEEC-HHH
T ss_pred EEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----------------CCCccEEEEEeC-HHH
Confidence 368999998 69999999999999999999999999998631 112348999997 999
Q ss_pred HHHHHHHHHhccccccc
Q 003997 247 VDAATDLIELLVTSVSG 263 (780)
Q Consensus 247 VdkAvelIE~LL~pVev 263 (780)
+++|+++|+.+|.+...
T Consensus 71 v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 71 VQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999987654
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.10 E-value=1.6e-10 Score=96.90 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||++|+|+|+|+++|||+|.|..++... ....+-.|.|+|+ .+.+
T Consensus 4 ~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~~~~~~v~I~G~-~~~v 62 (76)
T 1dtj_A 4 LVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--------------PGTRNRRVTITGS-PAAT 62 (76)
T ss_dssp EEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--------------TTCCEEEEEEEES-HHHH
T ss_pred EEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--------------CCCceeEEEEEeC-HHHH
Confidence 46899998 6999999999999999999999999999764210 1123458999997 8999
Q ss_pred HHHHHHHHhcccc
Q 003997 248 DAATDLIELLVTS 260 (780)
Q Consensus 248 dkAvelIE~LL~p 260 (780)
++|+++|+.+|.+
T Consensus 63 ~~A~~~I~~~i~e 75 (76)
T 1dtj_A 63 QAAQYLISQRVTY 75 (76)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999863
No 16
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.08 E-value=2.8e-10 Score=106.86 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccC
Q 003997 135 LECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKAD 214 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRPPsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~ 214 (780)
.+.+++.+..|++.|.+.. .+.+ .+ ......+|.||. +++|+|||.+|++||+|+++|||+|.|.+++..
T Consensus 57 ~e~v~~A~~~I~~~~~e~~-~~~~-~~--~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~ 126 (163)
T 3krm_A 57 PEAQFKAQGRIYGKLKEEN-FFGP-KE--EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP 126 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SSCS-SC--CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC
T ss_pred HHHHHHHHHHHHHHHhccc-cccc-cc--CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC
Confidence 7888889999999888762 1111 11 112356899998 699999999999999999999999999877521
Q ss_pred CCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccccccc
Q 003997 215 TGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGS 264 (780)
Q Consensus 215 k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pVevg 264 (780)
+.+++-.|.|+| +.+++++|+++|+.+|.+++..
T Consensus 127 ---------------~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~~ 160 (163)
T 3krm_A 127 ---------------DENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQQ 160 (163)
T ss_dssp ---------------CTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC-
T ss_pred ---------------CCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHHh
Confidence 123445799999 7899999999999999877643
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.08 E-value=1e-10 Score=98.71 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHH
Q 003997 166 LKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYE 245 (780)
Q Consensus 166 ~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~E 245 (780)
....+|.||. +++|+|||.+|++||+|+++|||+|.|.+... ...+-.|.|+|. .+
T Consensus 4 ~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~-----------------~~~~~~v~I~G~-~~ 59 (76)
T 2p2r_A 4 TTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----------------GSTDRQVTITGS-AA 59 (76)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCCCT-----------------TCSEEEEEEEEC-HH
T ss_pred ceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCCCC-----------------CCCeEEEEEEeC-HH
Confidence 3468999998 69999999999999999999999999987411 123458999997 99
Q ss_pred HHHHHHHHHHhcccc
Q 003997 246 KVDAATDLIELLVTS 260 (780)
Q Consensus 246 kVdkAvelIE~LL~p 260 (780)
.+++|+++|+.+|.+
T Consensus 60 ~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 60 SISLAQYLINVRLSS 74 (76)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999864
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1e-10 Score=100.13 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=58.8
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||++|++||+|+++|||+|.|..... ...+-.|.|+|+. +.+
T Consensus 7 ~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~-----------------~~~~r~v~I~G~~-~~v 62 (82)
T 1wvn_A 7 THELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPVE-----------------GSSGRQVTITGSA-ASI 62 (82)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCCT-----------------TCSEEEEEEEECH-HHH
T ss_pred EEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCCC-----------------CCCceEEEEEcCH-HHH
Confidence 67999998 69999999999999999999999999987421 1233589999965 999
Q ss_pred HHHHHHHHhccccc
Q 003997 248 DAATDLIELLVTSV 261 (780)
Q Consensus 248 dkAvelIE~LL~pV 261 (780)
++|+++|+.+|.+.
T Consensus 63 ~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 63 SLAQYLINARLSSE 76 (82)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999765
No 19
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.07 E-value=1.3e-10 Score=97.51 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||++|+++|+|++||||+|.|...|.. +=.|.|+|. .+++
T Consensus 6 ~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~-------------------~~~V~I~G~-~~~v 59 (71)
T 1vig_A 6 YVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSEK-------------------SNLIRIEGD-PQGV 59 (71)
T ss_dssp EEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSS-------------------SEEEEEEES-SHHH
T ss_pred EEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCCc-------------------ccEEEEEcC-HHHH
Confidence 57889998 599999999999999999999999999887630 117999998 5899
Q ss_pred HHHHHHHHhccc
Q 003997 248 DAATDLIELLVT 259 (780)
Q Consensus 248 dkAvelIE~LL~ 259 (780)
++|+++|+.|+.
T Consensus 60 ~~A~~~I~~i~~ 71 (71)
T 1vig_A 60 QQAKRELLELAS 71 (71)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC
Confidence 999999999863
No 20
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.06 E-value=8.5e-11 Score=102.33 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...+|.||. +++|+|||.+|+|||+|+++|||+|.|..... ..++-.|.|++. .+.
T Consensus 14 ~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----------------~~~~~~v~I~G~-~e~ 69 (89)
T 1j5k_A 14 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPLE-----------------GSEDRIITITGT-QDQ 69 (89)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSCCS-----------------SSSEEEEEEEEE-HHH
T ss_pred EEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCCCC-----------------CCCccEEEEEcC-HHH
Confidence 367899998 69999999999999999999999999976410 112347999997 999
Q ss_pred HHHHHHHHHhcccccccch
Q 003997 247 VDAATDLIELLVTSVSGSL 265 (780)
Q Consensus 247 VdkAvelIE~LL~pVevg~ 265 (780)
+++|+++|+++|.+...++
T Consensus 70 v~~A~~~I~~~i~e~~g~~ 88 (89)
T 1j5k_A 70 IQNAQYLLQNSVKQYSGKF 88 (89)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhhcCC
Confidence 9999999999998765554
No 21
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=8.1e-11 Score=103.66 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||++|+|||+|++||||+|.|...+. ++..|.|+|. .+.+
T Consensus 18 t~~i~Ip~------~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~-------------------~~~~V~I~G~-~e~v 71 (94)
T 2cte_A 18 SATVAIPK------EHHRFVIGKNGEKLQDLELKTATKIQIPRPDD-------------------PSNQIKITGT-KEGI 71 (94)
T ss_dssp EEEEECCT------TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS-------------------SCCEEEEEEC-HHHH
T ss_pred EEEEEECh------HHeeeeECCCChhHHHHHHHHCCEEEeCCCCC-------------------CCCeEEEEEC-HHHH
Confidence 57899998 59999999999999999999999999986531 1238999998 9999
Q ss_pred HHHHHHHHhccccccc
Q 003997 248 DAATDLIELLVTSVSG 263 (780)
Q Consensus 248 dkAvelIE~LL~pVev 263 (780)
++|+++|+.|+.+...
T Consensus 72 ~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 72 EKARHEVLLISAEQDK 87 (94)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999999876543
No 22
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.03 E-value=2.4e-10 Score=106.80 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCCCCCCCCc-cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCc
Q 003997 135 LECLELEKQEVIGEILKLNP-SYRTPPDYKPLL-KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP-~fRPPsDYkP~~-k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKG 212 (780)
.+.+++.+..|++.|.+... .|.+..+|.... ...+|.||. +++|+|||.+|+|+|+|+++|||+|.|..+.
T Consensus 57 ~~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~ 130 (164)
T 2jvz_A 57 PYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 130 (164)
T ss_dssp HHHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCC
Confidence 67788888888877766543 344444565431 246788888 6999999999999999999999999998763
Q ss_pred cCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccccccc
Q 003997 213 ADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGS 264 (780)
Q Consensus 213 S~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pVevg 264 (780)
. ...+-.|.|+|+ .+.+++|+++|+.||.++++|
T Consensus 131 ~-----------------~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~~g 164 (164)
T 2jvz_A 131 G-----------------TGPEKIAHIMGP-PDRCEHAARIINDLLQSLRSG 164 (164)
T ss_dssp T-----------------TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHHCC
T ss_pred C-----------------CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhhCC
Confidence 1 122358999997 899999999999999887654
No 23
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=1.9e-10 Score=102.21 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. ++||+|||++|+|||+|+++|||+|.|-.+|... ..+-.|.|+|. .+.+
T Consensus 18 ~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~----------------~~~~~V~I~G~-~e~v 74 (97)
T 2ctl_A 18 KLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN----------------QPQDQITITGY-EKNT 74 (97)
T ss_dssp EEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS----------------SCSSEEEEESC-HHHH
T ss_pred eEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC----------------CCccEEEEEeC-HHHH
Confidence 68999999 5999999999999999999999999998876311 01237999997 9999
Q ss_pred HHHHHHHHhccccccc
Q 003997 248 DAATDLIELLVTSVSG 263 (780)
Q Consensus 248 dkAvelIE~LL~pVev 263 (780)
++|+++|+.|+..++.
T Consensus 75 ~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 75 EAARDAILRIVGELEQ 90 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999977654
No 24
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=1.2e-10 Score=103.63 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCe-EEEeCC-ccCCCcchhcccCCCCccCCCCceEEEEEecCH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTV-IKVYGT-KADTGEKVEISTSDANVQSTYEEFHISISADSY 244 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAK-I~IRGK-GS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~ 244 (780)
.++.+.||. ++||.||||+|+|||+|+++|||+ |.|.++ | .|.|+|.+.
T Consensus 15 ~i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG-----------------------~V~I~g~~~ 65 (91)
T 2cpq_A 15 FHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDEDTG-----------------------TFRIYGESA 65 (91)
T ss_dssp EEEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTT-----------------------EEEEEESSH
T ss_pred eEEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCC-----------------------EEEEEECCH
Confidence 378999999 599999999999999999999998 999753 3 799999999
Q ss_pred HHHHHHHHHHHhccccccc
Q 003997 245 EKVDAATDLIELLVTSVSG 263 (780)
Q Consensus 245 EkVdkAvelIE~LL~pVev 263 (780)
|++++|+++|+.+-+.+.+
T Consensus 66 ea~~~A~~~I~~ie~~~~v 84 (91)
T 2cpq_A 66 DAVKKARGFLEFVEDFIQV 84 (91)
T ss_dssp HHHHHHHHHHSCCCCCCCC
T ss_pred HHHHHHHHHHHhhheEEec
Confidence 9999999999988776544
No 25
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=1.7e-10 Score=102.34 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||++|+|+|+|+++|||+|.|.++|... +=.|.|+|. .+++
T Consensus 18 t~~i~Ip~------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~------------------~~~V~I~G~-~e~v 72 (95)
T 2ctm_A 18 SEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD------------------PNCVTVTGL-PENV 72 (95)
T ss_dssp CEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC------------------TTEEEEESC-HHHH
T ss_pred EEEEEECH------HHccccCCCCcchHHHHHHHHCCeEEecCCCCCC------------------CcEEEEEcC-HHHH
Confidence 57999999 5999999999999999999999999998876311 127999998 6999
Q ss_pred HHHHHHHHhcccccccchhh
Q 003997 248 DAATDLIELLVTSVSGSLAA 267 (780)
Q Consensus 248 dkAvelIE~LL~pVevg~~a 267 (780)
++|+++|+.|+.+.+.+...
T Consensus 73 ~~A~~~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 73 EEAIDHILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999888776554
No 26
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.00 E-value=3.4e-10 Score=95.41 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...++.||. +++|.|||++|++||+|+++|||+|.|...|.. +-.|.|+|. .+.
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~-------------------er~v~I~G~-~~~ 58 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNCP-------------------ERIITLAGP-TNA 58 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCS-------------------EEEEEEEEC-HHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCC-------------------cEEEEEEeC-HHH
Confidence 367899998 699999999999999999999999999987521 126899998 999
Q ss_pred HHHHHHHHHhcccc
Q 003997 247 VDAATDLIELLVTS 260 (780)
Q Consensus 247 VdkAvelIE~LL~p 260 (780)
+++|+++|+.+|.+
T Consensus 59 v~~A~~~I~~~l~e 72 (73)
T 2axy_A 59 IFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 27
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=1.8e-10 Score=99.60 Aligned_cols=77 Identities=21% Similarity=0.215 Sum_probs=63.1
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||.+|+|||+|+++|||+|.|..++... ....+-.|.|+|. .+.+
T Consensus 4 t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------------~g~~~r~v~I~G~-~~~v 62 (87)
T 1ec6_A 4 LVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--------------PGTRNRRVTITGS-PAAT 62 (87)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--------------TTSCEEEEEEESS-HHHH
T ss_pred EEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--------------CCCCceEEEEEcC-HHHH
Confidence 56899998 6999999999999999999999999999764110 0123458999996 8999
Q ss_pred HHHHHHHHhcccccccch
Q 003997 248 DAATDLIELLVTSVSGSL 265 (780)
Q Consensus 248 dkAvelIE~LL~pVevg~ 265 (780)
++|+++|+.+|.+.+...
T Consensus 63 ~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 63 QAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999998765443
No 28
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=7e-10 Score=103.88 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-ccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCcc
Q 003997 135 LECLELEKQEVIGEILKLNPSYRTPPDYKPL-LKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 213 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRPPsDYkP~-~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS 213 (780)
.+.+++.|..|++.|.+.....++....... ....++.||. +++|+|||.+|+++|+|+++|||+|.|.+...
T Consensus 56 ~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~ 129 (160)
T 2jzx_A 56 TNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCCC
Confidence 6888889999998888865443321111111 1478899998 69999999999999999999999999986421
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccc
Q 003997 214 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 214 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~p 260 (780)
...++-.|.|+| +.+.+++|+++|+++|.+
T Consensus 130 ----------------~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 130 ----------------PNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp ----------------TTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 012345899999 899999999999998764
No 29
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=2.6e-10 Score=101.47 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=62.6
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHh-CCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET-RTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeET-GAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
.++|.||. +|++.|||++|++||+|++|| ||+|.|...|+.. -.|.|+|.+. .
T Consensus 18 t~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~-------------------~~V~I~G~~~-~ 71 (95)
T 2ctj_A 18 EVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGS-------------------DTVVIRGPSS-D 71 (95)
T ss_dssp CEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTC-------------------CEEEEESCHH-H
T ss_pred EEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCc-------------------ceEEEEcCHH-H
Confidence 57899998 599999999999999999999 9999998877421 1799999887 9
Q ss_pred HHHHHHHHHhcccccccch
Q 003997 247 VDAATDLIELLVTSVSGSL 265 (780)
Q Consensus 247 VdkAvelIE~LL~pVevg~ 265 (780)
|++|+++|+.|+.+.+...
T Consensus 72 v~~A~~~I~~iv~e~e~~~ 90 (95)
T 2ctj_A 72 VEKAKKQLLHLAEEKQTKS 90 (95)
T ss_dssp HHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhhhhhcc
Confidence 9999999999998776543
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=7.9e-10 Score=96.18 Aligned_cols=66 Identities=32% Similarity=0.462 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...+|.||. +++|+|||++|+|||+|++||||+|.|-.++. | -.|.|+++. |+
T Consensus 10 ~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~-------------------~-~~v~ItG~~-e~ 62 (83)
T 2dgr_A 10 TTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK-------------------E-PVFAVTGMP-EN 62 (83)
T ss_dssp EEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS-------------------C-CEEEEEECT-TT
T ss_pred eEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCCC-------------------C-CeEEEEcCH-HH
Confidence 357889987 69999999999999999999999999975421 1 247888876 89
Q ss_pred HHHHHHHHHhccc
Q 003997 247 VDAATDLIELLVT 259 (780)
Q Consensus 247 VdkAvelIE~LL~ 259 (780)
+++|+++|++++.
T Consensus 63 v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 63 VDRAREEIEAHIT 75 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
No 31
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.85 E-value=1.4e-09 Score=109.57 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHh-----CCCCCC-CCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEe-CCc
Q 003997 140 LEKQEVIGEILKL-----NPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVY-GTK 212 (780)
Q Consensus 140 eER~~IIeemlKl-----iP~fRP-PsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IR-GKG 212 (780)
+|-+.||.++.+. +..+|. .++|+|. +.+|.||. +.||.|||++|+|+|.|+++|||+|.|. ..|
T Consensus 3 ~~~~~~~~k~~~~~~~~~~~~pr~e~s~~aP~--i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g 74 (219)
T 2e3u_A 3 EEFEKLMKKFENVNKDGEIVEDEDEWEEFFKQ--EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITIDSETG 74 (219)
T ss_dssp ------------------------------CC--EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEECTTTC
T ss_pred hHHHHHHHHHHhhcccCCCCCCccccCCCCCE--EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEEcCCC
Confidence 4445556666652 223343 4567776 88999999 6999999999999999999999999998 433
Q ss_pred cCCCcchhcccCCCCccCCCCceEEEEEecC----HHHHHHHHHHHHhcc--cccccc
Q 003997 213 ADTGEKVEISTSDANVQSTYEEFHISISADS----YEKVDAATDLIELLV--TSVSGS 264 (780)
Q Consensus 213 S~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~----~EkVdkAvelIE~LL--~pVevg 264 (780)
.|.|.+.+ .+++++|+++|+.|+ .+++++
T Consensus 75 -----------------------~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 75 -----------------------EVWITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp -----------------------EEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred -----------------------EEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 57888876 899999999999999 444444
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.73 E-value=3.7e-08 Score=93.71 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=58.1
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||.+|+|||+|+++|||+|.|..+.... ....+-.|.|+| +.+.+
T Consensus 105 ~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~~~~~~v~I~G-~~~~v 163 (174)
T 1j4w_A 105 EFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPPN--------------ADPNMKLFTIRG-TPQQI 163 (174)
T ss_dssp EEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT--------------SCTTEEEEEEEC-CHHHH
T ss_pred EEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC--------------CCCCceEEEEEC-CHHHH
Confidence 67899997 6999999999999999999999999998763110 012234799999 89999
Q ss_pred HHHHHHHHhcc
Q 003997 248 DAATDLIELLV 258 (780)
Q Consensus 248 dkAvelIE~LL 258 (780)
++|+++|+++|
T Consensus 164 ~~A~~~I~~~i 174 (174)
T 1j4w_A 164 DYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999876
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.73 E-value=3.1e-09 Score=122.62 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCcc
Q 003997 135 LECLELEKQEVIGEILKLNPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 213 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRP-PsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS 213 (780)
.+..++.|.+|++.|.+.+...+. .++|+|. +.++.|+. ++||.||||+|+|||.|++|||++|.|+++|
T Consensus 529 l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~--~~~~~i~~------~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg- 599 (723)
T 3cdi_A 529 LNQAKGARLHILGVMEQAINAPRGDISEFAPR--IHTIKINP------DKIKDVIGKGGSVIRALTEETGTTIEIEDDG- 599 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhccccCce--EEEEEECH------HHhcccccccceeeeeeehhhCceEEecCCc-
Confidence 566778899999999999998877 7788887 88999998 5999999999999999999999999999876
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccccccc
Q 003997 214 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGS 264 (780)
Q Consensus 214 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pVevg 264 (780)
.|+|++.+.+++++|+++|+.|+...++|
T Consensus 600 ----------------------~v~I~~~~~~~~~~a~~~i~~i~~~~~vG 628 (723)
T 3cdi_A 600 ----------------------TVKIAATDGEKAKHAIRRIEEITAEIEVG 628 (723)
T ss_dssp ---------------------------------------------------
T ss_pred ----------------------cEEEecCCHHHHHHHHHHHHHHhhhhhcC
Confidence 58899999999999999999998776665
No 34
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.70 E-value=2.8e-08 Score=92.86 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||.+|+|||+|+++|||+|.|..++... ...+-.|.|+| +.+.|
T Consensus 3 ~~~~~Vp~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---------------~~~~r~v~I~G-~~~~v 60 (164)
T 2jvz_A 3 VQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---------------TNVDKPLRIIG-DPYKV 60 (164)
T ss_dssp EEEEEECT------TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---------------SSSCEEEEEEE-CHHHH
T ss_pred EEEEEech------hheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---------------CCCceEEEEEc-CHHHH
Confidence 57899998 5999999999999999999999999997554210 12334788999 78999
Q ss_pred HHHHHHHHhccccccc
Q 003997 248 DAATDLIELLVTSVSG 263 (780)
Q Consensus 248 dkAvelIE~LL~pVev 263 (780)
++|+++|..++.+.+.
T Consensus 61 ~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 61 QQACEMVMDILRERDQ 76 (164)
T ss_dssp HHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987653
No 35
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.61 E-value=2.4e-08 Score=95.01 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||.+|++||+|+++|||+|.|..... ...+-.|.|+|. .+.|
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-----------------~~~~r~v~I~G~-~~~v 59 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG-----------------TTPERIAQITGP-PDRA 59 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTT-----------------SCSEEEEEEEEC-HHHH
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecCCC-----------------CCCccEEEEEeC-HHHH
Confidence 46888998 69999999999999999999999999975310 122347899997 8999
Q ss_pred HHHHHHHHhccccccc
Q 003997 248 DAATDLIELLVTSVSG 263 (780)
Q Consensus 248 dkAvelIE~LL~pVev 263 (780)
++|+++|+++|...+.
T Consensus 60 ~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 60 QHAAEIITDLLRSVQA 75 (174)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987653
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.61 E-value=3.8e-08 Score=93.80 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...+|.||. +++|+|||.+|++||+|+++|||+|.|..+.... ...+-.|.|+|.. ++
T Consensus 104 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---------------~~~~~~v~I~G~~-~~ 161 (178)
T 2anr_A 104 NQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---------------NLQNRVVTVSGEP-EQ 161 (178)
T ss_dssp GEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------------------CCEEEEEEESSH-HH
T ss_pred eEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---------------CCCceEEEEEcCH-HH
Confidence 467999998 6999999999999999999999999998763100 1223478999975 89
Q ss_pred HHHHHHHHHhcccc
Q 003997 247 VDAATDLIELLVTS 260 (780)
Q Consensus 247 VdkAvelIE~LL~p 260 (780)
+++|+++|+++|.+
T Consensus 162 v~~A~~~I~~~i~e 175 (178)
T 2anr_A 162 NRKAVELIIQKIQE 175 (178)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999865
No 37
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.57 E-value=6e-09 Score=120.75 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccC
Q 003997 135 LECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKAD 214 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRPPsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~ 214 (780)
.+..++.|.+|++.|.+.+......++|.|. +.+|.||. ++||.||||+|++||.|+++|||+|.|.++|
T Consensus 568 L~~A~~~~~~I~~~m~~al~~~~~~~~~ap~--~~~~~I~~------~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG-- 637 (757)
T 1e3p_A 568 LKQARDARLHILDVMMEAIDTPDEMSPNAPR--IITVKIPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDG-- 637 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCCCCTTSCB--CCCC------------------------CTTCCCCCSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCce--eEEEEECh------HHeehcccccceeeehhhHhhCCEEEecCCc--
Confidence 5777788999999999999887336778776 78888998 5999999999999999999999999998765
Q ss_pred CCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcc
Q 003997 215 TGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 258 (780)
Q Consensus 215 k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL 258 (780)
.|+|++.+.+++++|.++|+.|+
T Consensus 638 ---------------------~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 638 ---------------------TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -----------------------CCCBSSHHHHCC---------
T ss_pred ---------------------eEEEecCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999987
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.47 E-value=9.8e-08 Score=89.36 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 246 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~Ek 246 (780)
...++.||. +++|+|||.+|+++|+|+++|||+|.|...|+ .+-.|.|+|. .+.
T Consensus 5 ~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-------------------~~r~v~I~G~-~~~ 58 (160)
T 2jzx_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-------------------PERIITLAGP-TNA 58 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT-------------------TEEEEEEEEE-HHH
T ss_pred EEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC-------------------CceEEEEEeC-HHH
Confidence 467899998 69999999999999999999999999987642 1237889997 899
Q ss_pred HHHHHHHHHhcccc
Q 003997 247 VDAATDLIELLVTS 260 (780)
Q Consensus 247 VdkAvelIE~LL~p 260 (780)
+++|+++|.+++.+
T Consensus 59 v~~A~~~I~~~i~e 72 (160)
T 2jzx_A 59 IFKAFAMIIDKLEE 72 (160)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888765
No 39
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=88.29 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||.+|++||+|+++|||+|.|...+.. ...+-.|.|+| +.+.+
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~----------------~~~~r~v~I~G-~~e~v 60 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPETP----------------DSKVRMVIITG-PPEAQ 60 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSST----------------TCSEEEEEEEE-CHHHH
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCCC----------------CCCceEEEEEc-CHHHH
Confidence 56889998 699999999999999999999999999876421 12233688999 79999
Q ss_pred HHHHHHHHhccccc
Q 003997 248 DAATDLIELLVTSV 261 (780)
Q Consensus 248 dkAvelIE~LL~pV 261 (780)
++|+.+|..++...
T Consensus 61 ~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 61 FKAQGRIYGKLKEE 74 (163)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988754
No 40
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.45 E-value=1.3e-07 Score=90.14 Aligned_cols=75 Identities=25% Similarity=0.210 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
..+|.||. +++|+|||.+|++||+|+++|||+|.|...+... . ...+-.|.|+|. .+.+
T Consensus 7 ~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-------------~-~~~er~v~I~G~-~~~v 65 (178)
T 2anr_A 7 FLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-------------P-GTTERVCLIQGT-IEAL 65 (178)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-------------T-TSSEEEEEEEEC-HHHH
T ss_pred EEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-------------C-CCCCceEEEEeC-HHHH
Confidence 57899998 6999999999999999999999999997654110 0 111235788885 8899
Q ss_pred HHHHHHHHhccccccc
Q 003997 248 DAATDLIELLVTSVSG 263 (780)
Q Consensus 248 dkAvelIE~LL~pVev 263 (780)
++|+++|++++.....
T Consensus 66 ~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 66 NAVHGFIAEKIREMPQ 81 (178)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999876543
No 41
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.92 E-value=9.1e-06 Score=76.54 Aligned_cols=73 Identities=12% Similarity=0.279 Sum_probs=57.5
Q ss_pred EEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCC-eEEEeCCccCCCcchhcccCCCCccCCCCc-eEEEEEecCHHH
Q 003997 169 AVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRT-VIKVYGTKADTGEKVEISTSDANVQSTYEE-FHISISADSYEK 246 (780)
Q Consensus 169 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGA-KI~IRGKGS~k~~K~E~~~~Dg~~~~~~Ep-LHVlIsAd~~Ek 246 (780)
..|+||. +.+|++||-+|.|+|.|+++||| +|.|.+..... ...+|. --|.|+| +.++
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~-------------~~~~~~~~~vtI~G-~~~~ 128 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN-------------VPQEEGMVPFVFVG-TKDS 128 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC-------------CCCCTTEEEEEEEE-EHHH
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC-------------ccccCCeeEEEEEe-CHHH
Confidence 7888998 69999999999999999999997 99998763110 011222 2477888 6889
Q ss_pred HHHHHHHHHhccccc
Q 003997 247 VDAATDLIELLVTSV 261 (780)
Q Consensus 247 VdkAvelIE~LL~pV 261 (780)
+++|+++|+.+|...
T Consensus 129 v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 129 IANATVLLDYHLNYL 143 (144)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998653
No 42
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.89 E-value=8e-06 Score=82.43 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=48.6
Q ss_pred ceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhccccc
Q 003997 183 FLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 183 FIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pV 261 (780)
.+|+|||.+|+|+|.||+.|||+|.|.|+ .|.|.| +.+.++.|.++|+.||...
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~------------------------~v~i~G-~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK------------------------TVAIIG-NPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT------------------------EEEEEE-CHHHHHHHHHHHHHHHTTC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe------------------------EEEEEe-CHHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999865 588888 6888999999999999653
No 43
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.73 E-value=1.9e-05 Score=78.51 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=47.7
Q ss_pred ceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccc
Q 003997 183 FLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 183 FIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~p 260 (780)
.+|+|||.+|+|+|.||..|||+|.|.|+ .|.|.| +.+.++.|.+.|+.|+..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~------------------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY------------------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS------------------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC------------------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999876 477777 688999999999999964
No 44
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.72 E-value=3.3e-05 Score=69.43 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHH-hCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHH
Q 003997 167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKE-TRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYE 245 (780)
Q Consensus 167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeE-TGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~E 245 (780)
...+|.||.+ |-+.|||.+|.|||+|+++ ++|+|.+-.+. -.|.|.|. .+
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~----------------------~~ItI~G~-~~ 77 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTEGE----------------------DKITLEGP-TE 77 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECSSS----------------------CEEEEEEC-HH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCCCC----------------------CEEEEECC-HH
Confidence 3578899984 8899999999999999997 58999876520 16999998 88
Q ss_pred HHHHHHHHHHhcccccccc
Q 003997 246 KVDAATDLIELLVTSVSGS 264 (780)
Q Consensus 246 kVdkAvelIE~LL~pVevg 264 (780)
.|++|+++|+.|+++.+..
T Consensus 78 ~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 78 DVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999765543
No 45
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.21 E-value=0.00046 Score=74.87 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cEEEEEcCCCCCCCCcceeeeecCCc--hhHHHHHHHhCCeEEEeCC
Q 003997 135 LECLELEKQEVIGEILKLNPSYRTPPDYKPLL-KEAVVPIPVKEYPGYNFLGLIFGPAS--DTQKRLEKETRTVIKVYGT 211 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRPPsDYkP~~-k~~KIyIPvkeyP~~NFIGlIIGPrG--nTiKrLEeETGAKI~IRGK 211 (780)
.+++++++..|++++.+. .++... ...+|-|+. .++..|||-+| .+||+|++||||+|.+-.+
T Consensus 161 v~~akeA~~~Ll~~l~~~--------e~~~~~~~s~~v~V~~------~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~ 226 (376)
T 3n89_A 161 QHELIEAAKRLNEILFRE--------SPAPENNFTLHFTLST------YYVDQVLGSSSTAQLMPVIERETTTIISYPCY 226 (376)
T ss_dssp HHHHHHHHHHHHHHHCC----------CCCSSCEEEEEEEEG------GGHHHHTCCTTSCCHHHHHHHHHTCEEECC--
T ss_pred HHHHHHHHHHHHHHHHhh--------hcccccceEEEEEeCH------HHHHHhhcCCCcchHHHHHHHhhCCEEECCCC
Confidence 678999999999888654 121111 245677776 47889999999 6679999999999999776
Q ss_pred ccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcc
Q 003997 212 KADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 258 (780)
Q Consensus 212 GS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL 258 (780)
+...+. ..+.-.|.|+| +.|+|++|.++|+.||
T Consensus 227 ~d~~d~-------------~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 227 NNRNET-------------RGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp --------------------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred CCcccc-------------cCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 532210 01123788999 8999999999999987
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.13 E-value=0.00072 Score=73.34 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCCccEEEEEcCCCCCCCCcceeeeecCCc--hhHHHHHHHhCCeEEEeCCcc--CC-CcchhcccCCCCccCCCCceE
Q 003997 162 YKPLLKEAVVPIPVKEYPGYNFLGLIFGPAS--DTQKRLEKETRTVIKVYGTKA--DT-GEKVEISTSDANVQSTYEEFH 236 (780)
Q Consensus 162 YkP~~k~~KIyIPvkeyP~~NFIGlIIGPrG--nTiKrLEeETGAKI~IRGKGS--~k-~~K~E~~~~Dg~~~~~~EpLH 236 (780)
-++-....++.||. .|.+.|||.+| .+||+|.+||||+|.+=+.+. .+ ..|+ =-
T Consensus 25 ~~~~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks---------------~~ 83 (376)
T 3n89_A 25 INPTRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFA---------------QQ 83 (376)
T ss_dssp CCTTEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTT---------------TE
T ss_pred ecCCEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCC---------------Ce
Confidence 33333457888888 48899999999 999999999999999976541 00 0111 15
Q ss_pred EEEEecCHHHHHHHHHHHHhcc
Q 003997 237 ISISADSYEKVDAATDLIELLV 258 (780)
Q Consensus 237 VlIsAd~~EkVdkAvelIE~LL 258 (780)
|.|+|. .++|++|.++|.+++
T Consensus 84 VtItG~-~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 84 VTITGY-FGDVDRARMLMRRNC 104 (376)
T ss_dssp EEEEEE-HHHHHHHHHHHHHSC
T ss_pred EEEEcC-HHHHHHHHHHHHhcC
Confidence 889984 789999999999863
No 47
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.65 E-value=0.0017 Score=64.59 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=54.7
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEE----ecC
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISIS----ADS 243 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIs----Ad~ 243 (780)
..+|.||. +-+|.|||-+|+|+|.|++++||+|.|..+. + -|.|. ..|
T Consensus 5 ~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~~~----~------------------~V~i~t~~~t~d 56 (191)
T 1tua_A 5 RIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDTEN----S------------------MVIVEPEAEGIP 56 (191)
T ss_dssp CEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEETTT----T------------------EEEEEESSTTSC
T ss_pred ceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEcCC----C------------------eEEEEeCCCCCC
Confidence 36899998 6999999999999999999999999997641 1 34444 246
Q ss_pred HHHHHHHHHHHHhccccccc
Q 003997 244 YEKVDAATDLIELLVTSVSG 263 (780)
Q Consensus 244 ~EkVdkAvelIE~LL~pVev 263 (780)
...+.+|.++|+.|...+..
T Consensus 57 p~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 57 PVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp HHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 78999999999887765543
No 48
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.60 E-value=0.0012 Score=62.09 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=45.7
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 247 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkV 247 (780)
.+++.||. +++|++||.+|.++|+|++|+| |.|-.-. +++-.+.+.+-+.+++
T Consensus 5 ~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-------------------~~~~~~i~~~~~p~~v 57 (144)
T 2qnd_A 5 HEQFIVRE------DLMGLAIGTHGANIQQARKVPG--VTAIDLD-------------------EDTCTFHIYGEDQDAV 57 (144)
T ss_dssp EEEEECCG------GGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-------------------TTTTEEEEEESSHHHH
T ss_pred EEEEEECC------cceeeEECCChhHHHHHHHHHC--CeEeccC-------------------CCchheeeccCCHHHH
Confidence 57899998 5999999999999999999999 4432210 1122466788888999
Q ss_pred HHHHHHH
Q 003997 248 DAATDLI 254 (780)
Q Consensus 248 dkAvelI 254 (780)
++|.+++
T Consensus 58 ~~~~~~l 64 (144)
T 2qnd_A 58 KKARSFL 64 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8887654
No 49
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=95.33 E-value=0.023 Score=54.35 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=56.5
Q ss_pred hCCCCCCCCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCC
Q 003997 152 LNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQST 231 (780)
Q Consensus 152 liP~fRPPsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~ 231 (780)
.+|-+..+.+++.+ ..+||.. ..+|+||||+|..|+.||..|+++|.|.=-.+.
T Consensus 44 ~~PwW~~~e~L~dP---lVF~vE~------~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~----------------- 97 (140)
T 3v69_A 44 KLPKWFHVECLEDP---KRLYVEP------RLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE----------------- 97 (140)
T ss_dssp CCCTTCCGGGGSSC---EEEEECG------GGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT-----------------
T ss_pred CCCCccCHHHCCCC---eEEEEeh------hhhhcccCCCcCccchHHhhcceeEEEeccCCC-----------------
Confidence 34555555555554 6778877 699999999999999999999999999843221
Q ss_pred CCceEEEEEecCHHHHHHHHHHHHhccc
Q 003997 232 YEEFHISISADSYEKVDAATDLIELLVT 259 (780)
Q Consensus 232 ~EpLHVlIsAd~~EkVdkAvelIE~LL~ 259 (780)
..--|.|.|....+ .+|+.+|++|..
T Consensus 98 -g~tEVtIfG~~~~Q-~rak~MI~sLA~ 123 (140)
T 3v69_A 98 -RRAEIWIFGPPPFR-RDVDRMLTDLAH 123 (140)
T ss_dssp -SCEEEEEESCHHHH-HHHHHHHHHHHH
T ss_pred -CcEEEEEECCHHHH-HHHHHHHHHHHH
Confidence 11358888865543 456667766654
No 50
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=82.80 E-value=1.7 Score=43.82 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=42.1
Q ss_pred cceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhc
Q 003997 182 NFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELL 257 (780)
Q Consensus 182 NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~L 257 (780)
+++.+++|++|..++.|.++++|+|.|--.| .|+|.+.+.+.+..+.+.|+.+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG-----------------------~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNG-----------------------RIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTT-----------------------EEEEECSCHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCC-----------------------EEEEecCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999994433 7999998876655555555544
No 51
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=76.75 E-value=1.2 Score=42.51 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=27.9
Q ss_pred cceeeeecCCchhHHHHHHHhCCeEEEeCC
Q 003997 182 NFLGLIFGPASDTQKRLEKETRTVIKVYGT 211 (780)
Q Consensus 182 NFIGlIIGPrGnTiKrLEeETGAKI~IRGK 211 (780)
+.+|+.||++|..+|.|++|.|-||.|-.-
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 469999999999999999999999988875
No 52
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Pseudomonas aeruginosa}
Probab=74.64 E-value=3.1 Score=38.48 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=50.8
Q ss_pred chhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCC--ccCCCCceEEEEEecCHHHHHHHHHHHHhccccc
Q 003997 192 SDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN--VQSTYEEFHISISADSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 192 GnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~--~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pV 261 (780)
..++|+|.+..+-||.+...+. ...+....|. ....++-|.|.|+|.+.+.|+.....|..-|...
T Consensus 36 sryl~qLc~H~~hK~~ve~d~~----~g~i~fp~G~~~l~a~~~~L~i~v~A~d~e~L~~lk~VVa~HL~rF 103 (118)
T 2jpi_A 36 ARYVNRLCKHWGHKFEVELTPE----RGFIDFGDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQRM 103 (118)
T ss_dssp HHHHHHHHHHTTTSSEEEECSS----EEEEECSSSCEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCceEcCC----ceEEEeCCeEEEEEecCCeEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 4679999999999988877642 2233333333 3456778999999999999999999999888765
No 53
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=72.63 E-value=3 Score=42.07 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=39.6
Q ss_pred cceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCH--HHHHHHHHHHH
Q 003997 182 NFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSY--EKVDAATDLIE 255 (780)
Q Consensus 182 NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~--EkVdkAvelIE 255 (780)
+++.+|||+++..++.|.++++|+|.|-=.| .|+|.+++. ..+.+|+++||
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVVGQNG-----------------------LIWVNGDRRKVSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEECTTS-----------------------EEEEESCHHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEEECCc-----------------------EEEEeCCchhHHHHHHHHHHHH
Confidence 6889999999999999999999999993333 788987655 34455555555
No 54
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=57.56 E-value=23 Score=31.97 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=38.1
Q ss_pred hhHHHHHHHh-CCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhccccc
Q 003997 193 DTQKRLEKET-RTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 193 nTiKrLEeET-GAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~pV 261 (780)
+++..|+.++ +..|.||-.|. +.-++|++.|.+.+.+++.++.+..+|...
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT------------------EP~irvy~Ea~~~~~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT------------------EDIVRVYAEANSQESADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS------------------SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCCC------------------ccEEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 5677777775 45788988873 123799999999998888888777777644
No 55
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=54.74 E-value=5.4 Score=38.30 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHH-HHHh--------CC---eEEEeCCc
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRL-EKET--------RT---VIKVYGTK 212 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrL-EeET--------GA---KI~IRGKG 212 (780)
.++|.||. +++|.+|| ++|+++ ++++ |+ +|.|...|
T Consensus 8 ~~~i~I~P------~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g 55 (187)
T 1go3_E 8 ADVVKVPP------EEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIG 55 (187)
T ss_dssp EEEEEECG------GGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEEC
T ss_pred EEEEEECH------HHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeecc
Confidence 57899999 58899999 899995 9999 97 78888755
No 56
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=53.49 E-value=1.3 Score=45.31 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=23.8
Q ss_pred cceeeeecCCchhHHHHHHHhCCeEEEeCCc
Q 003997 182 NFLGLIFGPASDTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 182 NFIGlIIGPrGnTiKrLEeETGAKI~IRGKG 212 (780)
+++.+|||+++..++.|.++++|+|.|-=.|
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG 194 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFVANNG 194 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEECTTS
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEECCc
Confidence 5888999999999999999999999984333
No 57
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=52.84 E-value=4.6 Score=43.96 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.8
Q ss_pred EEEEcCCCCCCCCcceeeeecCCchhHHHHHHHh-CCeEEEeCC
Q 003997 169 AVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET-RTVIKVYGT 211 (780)
Q Consensus 169 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeET-GAKI~IRGK 211 (780)
.||-+=. ..+++|-||..||++|..+|.|.+|. |-||.|-.-
T Consensus 237 aKIAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 279 (366)
T 1k0r_A 237 SKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY 279 (366)
T ss_dssp EEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred EEEEEEe-CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEc
Confidence 4665543 35789999999999999999999999 999999875
No 58
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=51.82 E-value=4.3 Score=42.73 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=42.2
Q ss_pred cceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhc
Q 003997 182 NFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELL 257 (780)
Q Consensus 182 NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~L 257 (780)
+++-+|||+++..++.|.++++|+|.|==.| .|+|.+.+.+..-.+.+.|+.+
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG-----------------------~IWI~~~~~~~~~~i~~aI~~~ 271 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMNG-----------------------RIWVKAKTIQQTLILANILEAC 271 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETTT-----------------------EEEECCSSHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECCc-----------------------EEEEecCChhHHHHHHHHHHHh
Confidence 6888999999999999999999999885554 7999998887655555555544
No 59
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=47.69 E-value=97 Score=30.80 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.8
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhcc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLV 258 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL 258 (780)
++.|+ +.++|.|+++++.|+++|
T Consensus 359 ~iRi~~~~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 359 HIGINIGCPRSVLEEILNRLRHTF 382 (383)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55554 357899999999998876
No 60
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=46.48 E-value=6.1 Score=41.04 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=34.4
Q ss_pred EEEEcCCCCCCCCcceeeeecCCchhHHHH-HHHhCCeEEEeCC
Q 003997 169 AVVPIPVKEYPGYNFLGLIFGPASDTQKRL-EKETRTVIKVYGT 211 (780)
Q Consensus 169 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrL-EeETGAKI~IRGK 211 (780)
.||-+=.. .+++|-||..||++|..++.| ++-.|-||.|-.-
T Consensus 114 ~KiAV~s~-d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 156 (251)
T 2asb_A 114 SKIAVRSN-VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY 156 (251)
T ss_dssp EEEEEEES-STTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred eEEEEEcC-CCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEe
Confidence 46655443 478999999999999999999 6667999999875
No 61
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=44.98 E-value=44 Score=33.87 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=20.4
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhcccc
Q 003997 236 HISISA----DSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 236 HVlIsA----d~~EkVdkAvelIE~LL~p 260 (780)
++.|+- .++|.++++++.|++++..
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 566663 4899999999999999865
No 62
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=42.74 E-value=1.8e+02 Score=28.65 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.1
Q ss_pred eEEEEEecCHHHHHHHHHHHHhcccc
Q 003997 235 FHISISADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 235 LHVlIsAd~~EkVdkAvelIE~LL~p 260 (780)
-+|.|+-.+++.++++++.|+++++.
T Consensus 326 ~~iRis~~~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 326 NWCRISLGTPQEMQWVADTMREFRKK 351 (354)
T ss_dssp TEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 37888877999999999999998864
No 63
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=42.59 E-value=16 Score=34.48 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=17.5
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||+|.|+++-+|.++
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~ 53 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHAR 53 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETT
T ss_pred HHHHHHHHHhCCceEeecCC
Confidence 46899999999999999753
No 64
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=41.47 E-value=17 Score=35.21 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=17.1
Q ss_pred hhHHHHHHHhCCeEEEeCC
Q 003997 193 DTQKRLEKETRTVIKVYGT 211 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGK 211 (780)
+.||+||+|.|+++-+|..
T Consensus 43 ~~I~~LE~~lg~~Lf~R~~ 61 (310)
T 2esn_A 43 HALGRLRQGLDDELFLRQG 61 (310)
T ss_dssp HHHHHHHHHHTSCCEEEET
T ss_pred HHHHHHHHhhCCcceeecC
Confidence 4689999999999999975
No 65
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=37.77 E-value=23 Score=34.12 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||+|.|+++-+|++|
T Consensus 39 ~~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 39 QRIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHHhCCeeEEcCCC
Confidence 46899999999999999865
No 66
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=36.75 E-value=13 Score=40.07 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCCCcceeeeecCCchhHHHHHHHh-CCeEEEeCC
Q 003997 169 AVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET-RTVIKVYGT 211 (780)
Q Consensus 169 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeET-GAKI~IRGK 211 (780)
.||-+=-. .+++|-+|..||++|..++.+.+|. |-||.|=.-
T Consensus 233 ~KiAV~s~-d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~~ 275 (344)
T 1hh2_P 233 TKVAVASN-DPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKW 275 (344)
T ss_dssp EEEEEEES-STTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC
T ss_pred cceeEEcc-CCCccccceeeccCCcEeHHHHHHhCCCeeeEEec
Confidence 45555443 5789999999999999999999999 888888654
No 67
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=36.51 E-value=27 Score=34.14 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=42.1
Q ss_pred EEEcCCCCCCCCcceeeeecCCch-hHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHH
Q 003997 170 VVPIPVKEYPGYNFLGLIFGPASD-TQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVD 248 (780)
Q Consensus 170 KIyIPvkeyP~~NFIGlIIGPrGn-TiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVd 248 (780)
-+.|+. +++-+|||-+|. .++.|.++++|+|.|==.| .|+|.+.+.+..-
T Consensus 94 l~~v~~------~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~ 144 (175)
T 2ja9_A 94 IIDVNL------NFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG-----------------------KIWVKCEELSNTL 144 (175)
T ss_dssp EEECCH------HHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT-----------------------EEEEECSSHHHHH
T ss_pred EEEEcH------HHhhHHhcCCCcchHHhhhccCCeEEEEECCc-----------------------EEEEecCCHHHHH
Confidence 455565 688899995455 9999999999999885554 7999998876544
Q ss_pred HHHHHHHh
Q 003997 249 AATDLIEL 256 (780)
Q Consensus 249 kAvelIE~ 256 (780)
.+.+.|+.
T Consensus 145 ~v~~aI~~ 152 (175)
T 2ja9_A 145 ACYRTIME 152 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 68
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=34.82 E-value=37 Score=35.85 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcccc
Q 003997 195 QKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 195 iKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~p 260 (780)
.+++-+.-|+++.+.|| ..+.+.+ -.||.++++|.+.+.+.++.+..+|..
T Consensus 291 ~~~~~~~p~~~~~~ygk-~~r~~rk--------------mGhv~~~~~~~~~~~~~~~~~~~~~~~ 341 (355)
T 3eth_A 291 NYDWLKLPLVHLHWYDK-EVRPGRK--------------VGHLNLTDSDTSRLTATLEALIPLLPP 341 (355)
T ss_dssp CGGGGGSTTCEEEECCC-CCCTTCE--------------EEEEEEECSCHHHHHHHHHHHGGGSCG
T ss_pred HHHHHhCCCCEEEEcCC-CCCCCCe--------------eEEEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45566678999999999 4433221 159999999988777777766666654
No 69
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=34.06 E-value=19 Score=34.56 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=17.6
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||++.|+++-+|.+.
T Consensus 36 ~~i~~LE~~lg~~Lf~R~~~ 55 (306)
T 3hhg_A 36 RIVKRLEEKLGVNLLNRTTR 55 (306)
T ss_dssp HHHHHHHHHHTSCCEETTSS
T ss_pred HHHHHHHHHhCCeeEeecCC
Confidence 46899999999999999753
No 70
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=30.68 E-value=2.3e+02 Score=27.90 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=18.7
Q ss_pred EEEEEe---cCHHHHHHHHHHHHhccc
Q 003997 236 HISISA---DSYEKVDAATDLIELLVT 259 (780)
Q Consensus 236 HVlIsA---d~~EkVdkAvelIE~LL~ 259 (780)
++.|+- .++|.++++++.|+++|.
T Consensus 370 ~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 370 ALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 566654 389999999999999875
No 71
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=30.66 E-value=27 Score=33.76 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.8
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||++.|+++-+|...
T Consensus 35 ~~i~~LE~~lg~~Lf~R~~r 54 (305)
T 3fxq_A 35 AAIQQLEDELKAPLLVRTKR 54 (305)
T ss_dssp HHHHHHHHHHTSCSEEECSS
T ss_pred HHHHHHHHHhCCeeEEecCC
Confidence 56899999999999999764
No 72
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=30.14 E-value=59 Score=34.42 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=30.6
Q ss_pred HHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhcc
Q 003997 195 QKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 258 (780)
Q Consensus 195 iKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL 258 (780)
+.++-+.-|+++.+.||...+.+.+ =.||.+.++|.+.+.+.++.+.+++
T Consensus 349 ~~~~~~~p~~~~~~ygk~~~~~~rk--------------mGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 349 AECALSIPNASIHLYSKGAAKPGRK--------------MGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp HHHHTTSTTEEEEECCCCSCCTTCE--------------EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEECCCCCCCCCCe--------------eEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 3444456789999999853332211 1699999998765544444433333
No 73
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=29.96 E-value=1.8e+02 Score=29.16 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=19.2
Q ss_pred eEEEEE-ecCHHHHHHHHHHHHhccc
Q 003997 235 FHISIS-ADSYEKVDAATDLIELLVT 259 (780)
Q Consensus 235 LHVlIs-Ad~~EkVdkAvelIE~LL~ 259 (780)
-+|.|+ +.+++.|+++++.|+++|+
T Consensus 371 ~~iRis~~~~~~~i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 371 GYVRIALVADVATCVKAAEDIVSLYR 396 (396)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 356555 3489999999999998763
No 74
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=29.85 E-value=2.3e+02 Score=28.07 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEe-CCc
Q 003997 135 LECLELEKQEVIGEILKLNPSYRTPPDYKPLLK-EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVY-GTK 212 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRPPsDYkP~~k-~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IR-GKG 212 (780)
++++++.|..+.+.+.+..+.++. +.+... ..-+.++.. |-.....++|.++.| |.|+ |..
T Consensus 280 ~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~g--i~v~~g~~ 342 (377)
T 3fdb_A 280 VAYLKNNHDFLLHEIPKRIPGAKI---TPMQATYLMWIDFRDT------------TIEGSPSEFFIEKAK--VAMNDGAW 342 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCEE---CCCSBCSEEEEECTTS------------CCCSCHHHHHHHHHC--EECEEGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCceE---ecCCeeEEEEEECccc------------CCCHHHHHHHHHhCC--EEecCChh
Confidence 667777777777777776665432 111111 111222211 111345677777766 4554 221
Q ss_pred cCCCcchhcccCCCCccCCCCceEEEEE-ecCHHHHHHHHHHHHhcccc
Q 003997 213 ADTGEKVEISTSDANVQSTYEEFHISIS-ADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 213 S~k~~K~E~~~~Dg~~~~~~EpLHVlIs-Ad~~EkVdkAvelIE~LL~p 260 (780)
-.. ...-+|.|+ +.++|.|+++++.|+++|..
T Consensus 343 ~~~----------------~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 343 FGE----------------DGTGFCRLNFATSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp GCG----------------GGTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred ccC----------------CCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 100 012255554 35889999999999998864
No 75
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=29.06 E-value=1.3e+02 Score=31.08 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=20.1
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhcccc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL~p 260 (780)
+|.|+ +.++|.|+++++.|+++++.
T Consensus 414 ~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 414 FVRASAFGSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 67666 45899999999999988754
No 76
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=27.56 E-value=2.3e+02 Score=27.80 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCccCCCC----CCCCCCCCCCCCCCCCchhH--H-HHHHHHHHHHHHHHHHHhC
Q 003997 92 QTRVDQIVQQLESGSLEAEENQ----VPEVAAQNADQKSPNPQVDR--E-LECLELEKQEVIGEILKLN 153 (780)
Q Consensus 92 QlRIeeIt~KL~tg~l~~~~~e----~s~SP~P~p~yds~GkR~NT--r-RekLEeER~~IIeemlKli 153 (780)
++.|++|...|+.-++++..-. |-+.|.-.-.--+.||-+-| + .+.+++...+++..+.++.
T Consensus 23 ~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~~L~~lG 91 (182)
T 1ais_A 23 QLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIG 91 (182)
T ss_dssp CCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred eeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHHcC
Confidence 3467788777776555443211 12233322233457888777 4 7888888888888888875
No 77
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.53 E-value=2.1e+02 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=20.2
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhccccc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL~pV 261 (780)
++.|+ +.++|.|+++++.|+++|...
T Consensus 363 ~iRis~~~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 363 FVRINLACPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 55554 468899999999999988653
No 78
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=27.51 E-value=2e+02 Score=30.02 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhccccc
Q 003997 236 HISISA----DSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 236 HVlIsA----d~~EkVdkAvelIE~LL~pV 261 (780)
+|.|+- .++|.|+++++.|++++...
T Consensus 432 ~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 432 GIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp EEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 555542 48999999999999998754
No 79
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=27.48 E-value=2.2e+02 Score=28.89 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=20.7
Q ss_pred eEEEEEe---cCHHHHHHHHHHHHhcccc
Q 003997 235 FHISISA---DSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 235 LHVlIsA---d~~EkVdkAvelIE~LL~p 260 (780)
-+|.|+- .++|.|+++++.|+++|..
T Consensus 375 ~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 375 NIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 3666664 4899999999999998853
No 80
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=26.21 E-value=15 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.3
Q ss_pred cceeeeecCCchhHHHHHHHh
Q 003997 182 NFLGLIFGPASDTQKRLEKET 202 (780)
Q Consensus 182 NFIGlIIGPrGnTiKrLEeET 202 (780)
+-.|+|||-+|.|++.||=-+
T Consensus 42 ed~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 42 EDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp GGGTTTTCGGGHHHHHHHHHH
T ss_pred CCcceEECCCCcchHHHHHHH
Confidence 357999999999999998765
No 81
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=25.22 E-value=95 Score=26.62 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=34.0
Q ss_pred hhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCC-ccCCCCceEEEEEecCHHHHHHHHHHHHhccc
Q 003997 193 DTQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN-VQSTYEEFHISISADSYEKVDAATDLIELLVT 259 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~Dg~-~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~ 259 (780)
..+-++-+++.|+|.|+-.|..-+.|+=..- -. .-...+.+.|.+.|+|++ +|++.|+.+|.
T Consensus 20 a~~v~~a~~f~s~I~i~~~~~~vnaKSim~l--m~Lg~~~G~~i~i~~~G~De~---~A~~~l~~~~~ 82 (85)
T 3ccd_A 20 AQFVKEAKGFTSEITVTSNGKSASAKSLFKL--QTLGLTQGTVVTISAEGEDEQ---KAVEHLVKLMA 82 (85)
T ss_dssp HHHHHHHTTSCSEEEEEETTEEEETTCHHHH--TTSCCCTTCEEEEEEESTTHH---HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCeEEEEECCEEEehHhHHHH--HhCCCCCCCEEEEEEeCCCHH---HHHHHHHHHHH
Confidence 4455567789999999854321112211100 00 122445788888888874 45555555554
No 82
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=25.07 E-value=13 Score=35.53 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.0
Q ss_pred EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeC
Q 003997 168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYG 210 (780)
Q Consensus 168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRG 210 (780)
...++++.+ -.++.||-+|.++|-..+-||++|.|+.
T Consensus 104 ~~~V~V~~~------q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 104 QVVIKVSED------DKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEEEECTT------THHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred EEEEEEChH------HhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 445677763 5799999999999999999999998864
No 83
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=24.84 E-value=20 Score=32.28 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=30.3
Q ss_pred eEEEEEecCHHHHHHHHHHHHhcccccccchhhhcccccccccc
Q 003997 235 FHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGEN 278 (780)
Q Consensus 235 LHVlIsAd~~EkVdkAvelIE~LL~pVevg~~a~~~~~~v~g~~ 278 (780)
-|++|. .+.+..++|.++++.|+..+..| .+|+.+++-+++.
T Consensus 11 ~hIli~-~~~~~~~~a~~~A~~i~~~l~~G-~~F~~lA~~~S~d 52 (112)
T 3gpk_A 11 GEIFLA-ATEENKPQVFANAEKIVEQLKQG-GSFVAYARQYSEA 52 (112)
T ss_dssp EEEEEE-CCGGGHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCS
T ss_pred EEEEEe-CChhhHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCC
Confidence 499998 44556777888888888777766 5777777666654
No 84
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=24.66 E-value=17 Score=34.54 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=14.9
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||+|.|+++-+|...
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~ 53 (294)
T 1ixc_A 34 RQMQALEADLGVVLLERSHR 53 (294)
T ss_dssp HHHHHHHHHHTSCCBC----
T ss_pred HHHHHHHHHHCCEEEEeCCC
Confidence 46899999999999999753
No 85
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=24.66 E-value=3.3e+02 Score=27.18 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=22.1
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhccccccc
Q 003997 236 HISISA----DSYEKVDAATDLIELLVTSVSG 263 (780)
Q Consensus 236 HVlIsA----d~~EkVdkAvelIE~LL~pVev 263 (780)
+|.|+- .++|.|+++++.|++++.....
T Consensus 361 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 361 VWRIGTMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 677763 4789999999999999876543
No 86
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=24.03 E-value=2.9e+02 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=20.9
Q ss_pred EEEEE-e-cCHHHHHHHHHHHHhccccc
Q 003997 236 HISIS-A-DSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 236 HVlIs-A-d~~EkVdkAvelIE~LL~pV 261 (780)
++.|+ + .++|.|+++++.|+++|+..
T Consensus 388 ~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 388 GIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp EEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 56666 3 59999999999999988643
No 87
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=23.95 E-value=3.1e+02 Score=27.02 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhCCCccCCCC----CCCCCCCCCCCCCCCCchhH--H-HHHHHHHHHHHHHHHHHhC
Q 003997 92 QTRVDQIVQQLESGSLEAEENQ----VPEVAAQNADQKSPNPQVDR--E-LECLELEKQEVIGEILKLN 153 (780)
Q Consensus 92 QlRIeeIt~KL~tg~l~~~~~e----~s~SP~P~p~yds~GkR~NT--r-RekLEeER~~IIeemlKli 153 (780)
++.|++|..+|+.-++++..-. |.+.|.-.-.--+.||-+-| + .+.+++...++++.+.++.
T Consensus 27 ~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~L~~lg 95 (188)
T 2z8u_A 27 NIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKELKDAG 95 (188)
T ss_dssp SCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred eeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHhcC
Confidence 3467888888886555543211 12233322233457888887 4 7888888888888888875
No 88
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=23.71 E-value=2.8e+02 Score=28.39 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=18.0
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhccc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLVT 259 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL~ 259 (780)
++.|+ +.+++.|+++++.|+++|+
T Consensus 396 ~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 396 FARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHh
Confidence 44443 3688999999999998875
No 89
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=22.87 E-value=5e+02 Score=25.95 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.8
Q ss_pred EEEEEecCHHHHHHHHHHHHhcc
Q 003997 236 HISISADSYEKVDAATDLIELLV 258 (780)
Q Consensus 236 HVlIsAd~~EkVdkAvelIE~LL 258 (780)
++.|+-.+.+.++++++.+++++
T Consensus 333 ~iRis~~~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 333 CLRITVGTREESQRVIDALRAEQ 355 (356)
T ss_dssp EEEEECCCHHHHHHHHHHHHTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHhhc
Confidence 78888778999999999998765
No 90
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=22.79 E-value=18 Score=34.16 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||++.|+++-+|+++
T Consensus 31 ~~i~~LE~~lg~~Lf~R~~~ 50 (300)
T 3mz1_A 31 NLIQGLEAHLRTKLLNRTTR 50 (300)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCeeEecCCC
Confidence 46899999999999999753
No 91
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=22.78 E-value=1.5e+02 Score=28.24 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccEEEEEcCCCCCCCCcceeeeecCCchhHH-------HHHHHhCCe--
Q 003997 135 LECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQK-------RLEKETRTV-- 205 (780)
Q Consensus 135 RekLEeER~~IIeemlKliP~fRPPsDYkP~~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiK-------rLEeETGAK-- 205 (780)
.+.+|+...++|....|.- ...++.+.- .+.+=+|-|=--..-| +|.+|++..
T Consensus 13 lea~ekalkemirqarkfa-------------gtvtytl~g-----n~l~i~itgvpeqvrkelakeaerl~~efni~v~ 74 (170)
T 4hhu_A 13 LEALEKALKEMIRQARKFA-------------GTVTYTLSG-----NRLVIVITGVPEQVRKELAKEAERLKAEFNINVQ 74 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------------CEEEEEEET-----TEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHhhc-------------ceEEEEEeC-----CEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEE
Confidence 4778888777777776642 122222221 1333444454444444 455667644
Q ss_pred EEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHH
Q 003997 206 IKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLI 254 (780)
Q Consensus 206 I~IRGKGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAd~~EkVdkAvelI 254 (780)
-.|-|.||+- +-+...+||.|++++|++..
T Consensus 75 y~imgsgsgv-------------------m~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 75 YQIMGSGSGV-------------------MVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp EEEECTTCCE-------------------EEEEEECSCHHHHHHHHHHH
T ss_pred EEEEeCCceE-------------------EEEEEecCcHHHHHHHHHHH
Confidence 4678887632 35677899999999997643
No 92
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=22.77 E-value=24 Score=33.82 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=12.9
Q ss_pred hhHHHHHHHhCCeEEEeC
Q 003997 193 DTQKRLEKETRTVIKVYG 210 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRG 210 (780)
+.||+||++.|+++-+|.
T Consensus 37 ~~i~~LE~~lg~~Lf~R~ 54 (306)
T 3fzv_A 37 TAVKGLEESFGVQLFIRH 54 (306)
T ss_dssp HHHHHHHHHC-CCCC---
T ss_pred HHHHHHHHHhCCeeEeec
Confidence 568999999999999993
No 93
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=22.61 E-value=2.2e+02 Score=28.86 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=19.5
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhcccc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL~p 260 (780)
+|.|+ +.++|.|+++++.|+++++.
T Consensus 396 ~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 396 YIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 55554 44999999999999988754
No 94
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=22.60 E-value=1.8e+02 Score=29.00 Aligned_cols=28 Identities=4% Similarity=-0.054 Sum_probs=21.7
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhccccccc
Q 003997 236 HISISA----DSYEKVDAATDLIELLVTSVSG 263 (780)
Q Consensus 236 HVlIsA----d~~EkVdkAvelIE~LL~pVev 263 (780)
+|.|+- .++|.++++++.|++++.....
T Consensus 354 ~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 354 AWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 666764 3789999999999999875443
No 95
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=22.57 E-value=72 Score=32.77 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCcceeeeecCCch-----------hHHHHHHHhCC-eEEEeCC
Q 003997 169 AVVPIPVKEYPGYNFLGLIFGPASD-----------TQKRLEKETRT-VIKVYGT 211 (780)
Q Consensus 169 ~KIyIPvkeyP~~NFIGlIIGPrGn-----------TiKrLEeETGA-KI~IRGK 211 (780)
+.+.--.+-.+.+..+|+|+||||. .+....+|..+ +|.+|-+
T Consensus 116 D~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~ 170 (242)
T 3qoy_A 116 DVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVD 170 (242)
T ss_dssp SEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECC
T ss_pred CEEEECHHHHHHHHHHhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEec
Confidence 3344444445555678999999965 25555555543 7888854
No 96
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=22.42 E-value=1e+02 Score=33.09 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=21.1
Q ss_pred EEEEEecCHHHHHHHHHHHHhcccccc
Q 003997 236 HISISADSYEKVDAATDLIELLVTSVS 262 (780)
Q Consensus 236 HVlIsAd~~EkVdkAvelIE~LL~pVe 262 (780)
.+.|.+-++++|+.+++.|.+.|+.+.
T Consensus 392 Ris~Agl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 392 RANMAGLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp EEEGGGCCHHHHHHHHHHHHHHHC---
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 466778899999999999999988764
No 97
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=22.32 E-value=2.6e+02 Score=27.77 Aligned_cols=23 Identities=17% Similarity=0.015 Sum_probs=18.2
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhcc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLV 258 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL 258 (780)
++.|+ +.++|.|+++++.|+++|
T Consensus 367 ~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 367 YQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55554 467899999999998876
No 98
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=22.28 E-value=19 Score=35.28 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||+|.|+++-+|...
T Consensus 34 ~~I~~LE~~lg~~Lf~R~~r 53 (312)
T 2h9b_A 34 RQIQNLEEELGIQLLERGSR 53 (312)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCEeEeeCCC
Confidence 46899999999999999753
No 99
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=21.91 E-value=2.1e+02 Score=28.47 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=21.0
Q ss_pred eEEEEE-ecCHHHHHHHHHHHHhcccc
Q 003997 235 FHISIS-ADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 235 LHVlIs-Ad~~EkVdkAvelIE~LL~p 260 (780)
-++.|+ +.++|.|+++++.|+++|+.
T Consensus 348 ~~iRis~~~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 348 DYVRLALVYDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 367666 45999999999999998864
No 100
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=21.89 E-value=3.4e+02 Score=26.78 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=20.6
Q ss_pred EEEEEe---cCHHHHHHHHHHHHhccccc
Q 003997 236 HISISA---DSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 236 HVlIsA---d~~EkVdkAvelIE~LL~pV 261 (780)
++.|+- .+++.++++++.|++++...
T Consensus 351 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 351 TFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 566664 48999999999999988643
No 101
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=21.60 E-value=2.5e+02 Score=27.92 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=21.2
Q ss_pred EEEEE----ecCHHHHHHHHHHHHhccccc
Q 003997 236 HISIS----ADSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 236 HVlIs----Ad~~EkVdkAvelIE~LL~pV 261 (780)
++.|+ ..++|.++++++.|+++++..
T Consensus 342 ~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 342 LTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 67776 368999999999999988754
No 102
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=21.24 E-value=5.2e+02 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.5
Q ss_pred eEEEEEecCHHHHHHHHHHHHhcc
Q 003997 235 FHISISADSYEKVDAATDLIELLV 258 (780)
Q Consensus 235 LHVlIsAd~~EkVdkAvelIE~LL 258 (780)
-++.|+-.+++.+++.++.|+++|
T Consensus 340 ~~iRis~~~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 340 TAVRITIGKEEDNSAVIALLEKLL 363 (363)
T ss_dssp TEEEEECCCHHHHHHHHHHHHHHC
T ss_pred CeEEEECCCHHHHHHHHHHHHHhC
Confidence 378888779999999999998865
No 103
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=21.12 E-value=2.3e+02 Score=28.43 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=20.2
Q ss_pred EEEEEe---cCHHH-HHHHHHHHHhcccccc
Q 003997 236 HISISA---DSYEK-VDAATDLIELLVTSVS 262 (780)
Q Consensus 236 HVlIsA---d~~Ek-VdkAvelIE~LL~pVe 262 (780)
++.|+- .+.+. ++++++.|++++....
T Consensus 361 ~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 361 IWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 677775 44455 9999999999987543
No 104
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=20.85 E-value=3.7e+02 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.6
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhcccc
Q 003997 236 HISIS-ADSYEKVDAATDLIELLVTS 260 (780)
Q Consensus 236 HVlIs-Ad~~EkVdkAvelIE~LL~p 260 (780)
+|.|+ +.++|.|+++++.|+++++.
T Consensus 370 ~iRis~~~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 370 WVRISYCVDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 45443 57899999999999998764
No 105
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.15 E-value=2.8e+02 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=21.4
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhccccc
Q 003997 236 HISISA----DSYEKVDAATDLIELLVTSV 261 (780)
Q Consensus 236 HVlIsA----d~~EkVdkAvelIE~LL~pV 261 (780)
+|.|+- .++|.++++++.|++++...
T Consensus 359 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 359 VLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp EEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 677764 38999999999999998754
No 106
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=20.07 E-value=22 Score=35.14 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003997 193 DTQKRLEKETRTVIKVYGTK 212 (780)
Q Consensus 193 nTiKrLEeETGAKI~IRGKG 212 (780)
+.||+||+|.|+++-+|...
T Consensus 34 ~~I~~LE~~lG~~Lf~R~~r 53 (313)
T 2h98_A 34 RQIQKLEEELGIQLFERGFR 53 (313)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCeeEEcCCC
Confidence 45899999999999999753
Done!