BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003998
(780 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
Length = 291
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDNASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ AEE+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The
Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate
Length = 291
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ AEE+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3C|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
pdb|3B3S|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
Length = 291
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ AEE+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3W|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
pdb|3B7I|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
Length = 291
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ AEE+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica
Aminopeptidase
pdb|1FT7|A Chain A, Aap Complexed With L-Leucinephosphonic Acid
pdb|1LOK|A Chain A, The 1.20 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica Complexed
With Tris: A Tale Of Buffer Inhibition
pdb|2PRQ|A Chain A, X-Ray Crystallographic Characterization Of The Co(Ii)-
Substituted Tris-Bound Form Of The Aminopeptidase From
Aeromonas Proteolytica
pdb|1AMP|A Chain A, Crystal Structure Of Aeromonas Proteolytica
Aminopeptidase: A Prototypical Member Of The
Co-Catalytic Zinc Enzyme Family
pdb|2IQ6|A Chain A, Crystal Structure Of The Aminopeptidase From Vibrio
Proteolyticus In Complexation With Leucyl-Leucyl-Leucine
Length = 291
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ AEE+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica
pdb|1TXR|A Chain A, X-Ray Crystal Structure Of Bestatin Bound To Aap
pdb|1XRY|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
In Complex With Bestatin
pdb|2DEA|A Chain A, Crystal Structure Of The Aminopeptidase Of Aeromonas
Proteolytica At Ph 4.7
pdb|2NYQ|A Chain A, Structure Of Vibrio Proteolyticus Aminopeptidase With A
Bound Trp Fragment Of Dlwcf
pdb|3FH4|A Chain A, Crystal Structure Of Recombinant Vibrio Proteolyticus
Aminopeptidase
pdb|3VH9|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
Complexed With 8-Quinolinol
Length = 299
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ AEE+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYK 166
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The
Aminopeptidase From Aeromonas Proteolytica
Length = 291
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------PGAGDCGSCVASMLEL 82
GY N ++VM I T S+ D +++ GH D + S PGA D S +A++ E+
Sbjct: 72 GY-NQKSVVMTI--TGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEV 128
Query: 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120
R+ ++ + P R I F+ A E+ + G+ +K
Sbjct: 129 IRVLSENNFQPKRSIAFMAYAAHEVGLRGSQDLANQYK 166
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPP 94
H I + + ++T+ +++ H D +PGA D S VA LELAR+ S
Sbjct: 204 HNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELARVM--SKLKTD 261
Query: 95 RPIIFLFNGAEELFMLGAHGF 115
+ F+ GAEE ++G+ +
Sbjct: 262 TELRFITFGAEENGLIGSKKY 282
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 37 NIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRP 96
N++ + S D VL+ H D GA D G+ VA + A+ +D P R
Sbjct: 237 NVIAEVKG--STKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERT 294
Query: 97 IIFLFNGAEELFMLGAHGFMKAHK 120
I + AEEL +LG + K H+
Sbjct: 295 IRVVLYAAEELGLLGGKTYAKEHE 318
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 47 SQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELAR---LTIDSGWIPPRPIIFLFNG 103
S + D V++ GH D + GA D S VA + E+AR + GW P R IIF
Sbjct: 322 SVEPDRYVILGGHRDSWVF--GAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWD 379
Query: 104 AEELFMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQSGP 147
AEE +LG+ + + + ++ A IN ++S G L P
Sbjct: 380 AEEFGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTP 425
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,153,533
Number of Sequences: 62578
Number of extensions: 879917
Number of successful extensions: 2153
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2142
Number of HSP's gapped (non-prelim): 12
length of query: 780
length of database: 14,973,337
effective HSP length: 106
effective length of query: 674
effective length of database: 8,340,069
effective search space: 5621206506
effective search space used: 5621206506
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)