Query 003998
Match_columns 780
No_of_seqs 335 out of 1934
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 15:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 5E-123 1E-127 1067.0 53.8 711 3-780 100-834 (834)
2 PF04389 Peptidase_M28: Peptid 100.0 2.6E-30 5.7E-35 258.2 10.6 168 52-221 1-179 (179)
3 KOG2195 Transferrin receptor a 100.0 4.1E-29 9E-34 291.1 17.2 278 29-313 332-633 (702)
4 PRK10199 alkaline phosphatase 99.9 9.9E-23 2.1E-27 221.1 19.5 196 34-238 96-345 (346)
5 COG2234 Iap Predicted aminopep 99.8 1.4E-18 3.1E-23 197.3 15.3 188 33-231 182-390 (435)
6 PF09940 DUF2172: Domain of un 99.5 3.4E-13 7.3E-18 145.7 19.5 203 2-236 100-307 (386)
7 KOG3946 Glutaminyl cyclase [Po 99.5 1.5E-13 3.3E-18 141.6 11.0 192 30-231 100-332 (338)
8 PF05450 Nicastrin: Nicastrin; 99.3 6.7E-11 1.5E-15 123.4 16.3 165 52-217 1-200 (234)
9 COG4882 Predicted aminopeptida 99.2 1.4E-10 3.1E-15 123.3 14.9 155 34-214 177-343 (486)
10 KOG2526 Predicted aminopeptida 99.1 1E-09 2.2E-14 119.1 13.6 211 17-231 174-414 (555)
11 TIGR03176 AllC allantoate amid 99.0 5E-10 1.1E-14 126.6 10.1 90 27-119 47-141 (406)
12 COG4310 Uncharacterized protei 99.0 4.6E-09 9.9E-14 110.1 12.7 196 3-235 150-354 (435)
13 PF01546 Peptidase_M20: Peptid 98.9 1.2E-08 2.6E-13 102.1 11.0 166 55-232 1-188 (189)
14 TIGR01879 hydantase amidase, h 98.9 8E-09 1.7E-13 116.6 10.5 85 32-119 50-139 (401)
15 PRK13590 putative bifunctional 98.8 9.7E-09 2.1E-13 121.5 10.1 86 29-117 231-321 (591)
16 PRK09133 hypothetical protein; 98.8 1.7E-08 3.7E-13 116.4 11.4 96 34-133 87-203 (472)
17 PRK13799 unknown domain/N-carb 98.8 1E-08 2.3E-13 121.1 9.5 88 27-117 228-321 (591)
18 PRK12890 allantoate amidohydro 98.8 2.7E-08 5.7E-13 112.8 10.5 83 33-118 58-145 (414)
19 PRK12891 allantoate amidohydro 98.8 2.5E-08 5.4E-13 113.1 10.1 84 31-117 58-146 (414)
20 PRK06133 glutamate carboxypept 98.7 7.1E-08 1.5E-12 109.3 12.7 94 35-134 87-197 (410)
21 TIGR01910 DapE-ArgE acetylorni 98.7 5E-08 1.1E-12 109.0 11.0 94 37-134 53-167 (375)
22 PRK08596 acetylornithine deace 98.7 7.6E-08 1.7E-12 109.4 11.7 97 34-134 61-178 (421)
23 PRK07473 carboxypeptidase; Pro 98.6 2E-07 4.2E-12 104.6 12.4 96 36-135 62-174 (376)
24 PRK07906 hypothetical protein; 98.6 1.2E-07 2.7E-12 107.7 10.4 85 34-120 50-155 (426)
25 PRK13983 diaminopimelate amino 98.6 2.4E-07 5.3E-12 104.0 12.6 95 35-132 63-180 (400)
26 PRK09290 allantoate amidohydro 98.6 1.5E-07 3.4E-12 106.6 10.6 84 34-120 58-146 (413)
27 PRK13013 succinyl-diaminopimel 98.6 2.2E-07 4.8E-12 105.5 11.6 97 34-133 70-187 (427)
28 PRK12893 allantoate amidohydro 98.6 1.7E-07 3.6E-12 106.2 10.4 85 33-120 60-149 (412)
29 PRK12892 allantoate amidohydro 98.6 1.9E-07 4.1E-12 105.7 10.5 84 32-119 58-146 (412)
30 PRK07338 hypothetical protein; 98.6 2.5E-07 5.4E-12 104.3 11.4 95 34-134 79-190 (402)
31 PRK08588 succinyl-diaminopimel 98.6 2.8E-07 6E-12 103.0 11.3 93 35-133 48-161 (377)
32 PRK09104 hypothetical protein; 98.6 3E-07 6.5E-12 105.9 11.9 98 35-134 68-191 (464)
33 TIGR01883 PepT-like peptidase 98.6 3E-07 6.6E-12 102.0 11.0 80 35-118 49-146 (361)
34 PRK07907 hypothetical protein; 98.5 4.6E-07 1E-11 103.9 11.2 96 34-135 69-185 (449)
35 PRK06837 acetylornithine deace 98.5 5.5E-07 1.2E-11 102.6 11.4 85 32-118 80-185 (427)
36 PRK05469 peptidase T; Provisio 98.5 9.1E-07 2E-11 100.1 12.8 85 32-118 52-186 (408)
37 PRK13381 peptidase T; Provisio 98.5 9E-07 1.9E-11 100.1 12.6 95 33-133 52-196 (404)
38 TIGR01893 aa-his-dipept aminoa 98.4 7.9E-07 1.7E-11 102.8 10.7 98 31-135 42-166 (477)
39 PRK08201 hypothetical protein; 98.4 8.8E-07 1.9E-11 101.8 10.9 99 34-135 65-184 (456)
40 PRK07079 hypothetical protein; 98.4 9.3E-07 2E-11 102.0 11.0 97 34-133 71-190 (469)
41 PRK08262 hypothetical protein; 98.4 8.8E-07 1.9E-11 102.6 10.7 81 36-118 98-201 (486)
42 PRK06915 acetylornithine deace 98.4 8.8E-07 1.9E-11 100.6 10.0 94 33-132 78-192 (422)
43 PRK06446 hypothetical protein; 98.4 1.1E-06 2.5E-11 100.3 10.7 94 35-134 50-164 (436)
44 KOG2275 Aminoacylase ACY1 and 98.4 1.1E-06 2.3E-11 96.7 9.7 98 35-135 74-193 (420)
45 TIGR01892 AcOrn-deacetyl acety 98.4 1.7E-06 3.6E-11 96.0 10.8 91 34-132 45-155 (364)
46 PRK04443 acetyl-lysine deacety 98.4 1.7E-06 3.8E-11 95.8 10.7 91 32-133 45-147 (348)
47 TIGR01882 peptidase-T peptidas 98.3 2.2E-06 4.7E-11 97.2 11.4 84 33-118 54-188 (410)
48 TIGR01880 Ac-peptdase-euk N-ac 98.3 2.1E-06 4.5E-11 96.9 11.1 96 34-132 56-173 (400)
49 TIGR01886 dipeptidase dipeptid 98.3 1.4E-06 3E-11 100.6 9.8 85 33-120 63-166 (466)
50 PRK07318 dipeptidase PepV; Rev 98.3 1.5E-06 3.3E-11 100.2 10.0 86 32-120 63-167 (466)
51 PRK13007 succinyl-diaminopimel 98.3 2E-06 4.2E-11 95.2 10.2 91 35-133 49-155 (352)
52 PRK13009 succinyl-diaminopimel 98.3 2.8E-06 6E-11 94.8 10.7 94 34-132 46-162 (375)
53 PRK06156 hypothetical protein; 98.3 3.8E-06 8.3E-11 98.2 11.8 94 33-133 93-213 (520)
54 PRK07205 hypothetical protein; 98.3 3.1E-06 6.6E-11 97.0 10.6 80 36-120 65-165 (444)
55 TIGR01900 dapE-gram_pos succin 98.3 3.3E-06 7.2E-11 94.6 10.6 95 36-134 41-170 (373)
56 PRK15026 aminoacyl-histidine d 98.3 7E-06 1.5E-10 95.1 13.2 96 32-134 49-171 (485)
57 PRK07522 acetylornithine deace 98.2 5E-06 1.1E-10 93.1 10.7 92 35-132 52-164 (385)
58 PRK08651 succinyl-diaminopimel 98.2 6.2E-06 1.3E-10 92.7 10.6 91 35-135 63-173 (394)
59 COG1363 FrvX Cellulase M and r 98.2 4.5E-05 9.7E-10 84.2 16.4 150 69-236 178-348 (355)
60 PRK05111 acetylornithine deace 98.2 7.2E-06 1.6E-10 91.8 10.5 79 35-120 60-158 (383)
61 COG0624 ArgE Acetylornithine d 98.2 7.4E-06 1.6E-10 92.7 10.4 97 34-133 61-180 (409)
62 PRK08554 peptidase; Reviewed 98.2 9.8E-06 2.1E-10 92.8 11.4 94 35-135 52-166 (438)
63 PRK13004 peptidase; Reviewed 98.2 1.1E-05 2.4E-10 91.0 11.7 93 34-133 57-171 (399)
64 PRK08652 acetylornithine deace 98.1 7.6E-06 1.7E-10 90.1 9.3 76 52-133 56-143 (347)
65 TIGR01891 amidohydrolases amid 98.1 1.4E-05 3E-10 89.1 11.2 92 35-134 43-151 (363)
66 PRK00466 acetyl-lysine deacety 98.1 9.9E-06 2.1E-10 89.7 9.3 75 53-134 62-148 (346)
67 TIGR01887 dipeptidaselike dipe 98.1 1.3E-05 2.8E-10 92.0 10.5 85 32-119 51-154 (447)
68 TIGR01902 dapE-lys-deAc N-acet 98.1 1.6E-05 3.6E-10 87.5 10.8 88 35-135 39-138 (336)
69 TIGR01246 dapE_proteo succinyl 98.0 2.5E-05 5.4E-10 87.1 10.4 93 35-132 44-159 (370)
70 KOG2657 Transmembrane glycopro 97.9 6.7E-05 1.5E-09 84.1 11.0 186 33-219 155-373 (596)
71 TIGR03526 selenium_YgeY putati 97.8 8.1E-05 1.8E-09 84.0 10.6 91 35-132 56-168 (395)
72 TIGR03320 ygeY M20/DapE family 97.8 8.4E-05 1.8E-09 83.8 10.1 91 35-132 56-168 (395)
73 PF05343 Peptidase_M42: M42 gl 97.8 9.1E-05 2E-09 80.4 9.5 131 69-213 132-282 (292)
74 TIGR03107 glu_aminopep glutamy 97.7 0.00039 8.5E-09 77.3 13.1 146 69-234 176-341 (350)
75 PLN02693 IAA-amino acid hydrol 97.7 0.00014 3E-09 83.5 9.5 81 34-119 89-183 (437)
76 PRK08737 acetylornithine deace 97.6 0.00019 4.1E-09 80.3 9.5 81 35-132 54-154 (364)
77 PLN02280 IAA-amino acid hydrol 97.6 0.00033 7.1E-09 81.2 11.2 79 35-119 140-233 (478)
78 PRK09961 exoaminopeptidase; Pr 97.3 0.0019 4.1E-08 71.8 12.0 150 68-234 163-333 (344)
79 COG4187 RocB Arginine degradat 97.2 0.0013 2.9E-08 73.0 9.8 99 34-136 64-209 (553)
80 PRK09864 putative peptidase; P 97.2 0.0039 8.5E-08 69.4 13.6 147 69-234 173-341 (356)
81 TIGR03106 trio_M42_hydro hydro 97.1 0.004 8.6E-08 69.2 11.5 145 69-231 181-339 (343)
82 KOG2276 Metalloexopeptidases [ 95.9 0.015 3.3E-07 64.3 6.7 74 44-119 86-180 (473)
83 PF04114 Gaa1: Gaa1-like, GPI 95.8 0.055 1.2E-06 63.2 11.4 98 34-140 2-113 (504)
84 COG1473 AbgB Metal-dependent a 89.6 1.9 4.1E-05 49.0 10.1 92 36-133 57-164 (392)
85 PRK02813 putative aminopeptida 86.2 1.6 3.5E-05 50.1 6.9 142 67-219 230-416 (428)
86 KOG3566 Glycosylphosphatidylin 80.3 6.5 0.00014 46.0 8.6 75 35-119 120-194 (617)
87 PTZ00371 aspartyl aminopeptida 79.7 7.8 0.00017 45.1 9.2 149 67-220 247-444 (465)
88 PRK02256 putative aminopeptida 77.1 3.3 7.2E-05 48.0 5.1 46 67-116 256-301 (462)
89 COG2195 PepD Di- and tripeptid 75.8 4.4 9.6E-05 46.3 5.6 60 70-132 143-203 (414)
90 TIGR03106 trio_M42_hydro hydro 45.8 24 0.00052 39.4 4.3 32 30-64 40-71 (343)
91 PRK09961 exoaminopeptidase; Pr 42.8 24 0.00052 39.4 3.7 31 30-64 37-67 (344)
92 COG3152 Predicted membrane pro 39.8 2.5E+02 0.0053 26.9 9.5 23 442-467 72-94 (125)
93 TIGR03107 glu_aminopep glutamy 36.1 36 0.00078 38.2 3.8 33 30-64 35-67 (350)
94 PF05656 DUF805: Protein of un 33.9 3.7E+02 0.0081 24.6 10.1 9 442-450 67-75 (120)
95 TIGR02789 nickel_nikB nickel A 28.1 8.2E+02 0.018 26.7 18.5 63 311-373 95-157 (314)
96 PF10337 DUF2422: Protein of u 27.9 5E+02 0.011 30.1 11.5 73 409-485 143-218 (459)
97 COG2245 Predicted membrane pro 26.2 7E+02 0.015 25.3 10.8 42 481-528 81-122 (182)
98 PRK08651 succinyl-diaminopimel 21.9 1.4E+02 0.003 33.4 5.3 56 176-237 338-393 (394)
99 TIGR01880 Ac-peptdase-euk N-ac 20.9 1.7E+02 0.0036 33.0 5.8 56 176-236 343-399 (400)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=5.4e-123 Score=1067.04 Aligned_cols=711 Identities=26% Similarity=0.443 Sum_probs=604.3
Q ss_pred ccceeEEEEEEEeeeeeEEeeeCCceEeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHH
Q 003998 3 LVIAKIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLEL 82 (780)
Q Consensus 3 ~~~~~~ev~~q~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLEl 82 (780)
+|.+++|+|.|..+|+|.. +.+++.|++++||++||.+++. ..+.+||++||+||++++|||+|||+|||+|||+
T Consensus 100 ~~~~~~Evd~q~~sg~~~~----~~~~~~Y~~i~NIvVki~~k~~-~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~ 174 (834)
T KOG2194|consen 100 SDLYDMEVDLQSASGSFIL----EGMTLVYQNISNIVVKISPKNG-NDKNALLLNAHFDSVPTGPGATDDGSGVASMLEA 174 (834)
T ss_pred cchhhheeceeeccceeee----hhhhheeeeeeeEEEecCCCCC-CccceeeeeccccccCCCCCCCcchhHHHHHHHH
Confidence 3468999999999999954 5788999999999999999874 3445999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCCcceEEecCCCCchhhHhhhhccCc
Q 003998 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYP 162 (780)
Q Consensus 83 aR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~~~y~~~~~~P 162 (780)
+|++++.....+|+|+|+||||||.+|+|||+|++||||+++++++||||++|+||++++||+||++|+++.|.++++||
T Consensus 175 lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phP 254 (834)
T KOG2194|consen 175 LRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHP 254 (834)
T ss_pred HHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCc
Confidence 99999987778999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred cccccccccC--CCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcCccc
Q 003998 163 MAHSAAQDVF--PVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKL 240 (780)
Q Consensus 163 ~~~~~~~~~f--~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a~~l 240 (780)
+++++++|.| |.+||+|||++|. +|+|+||+|+|+..|++.|||++|.++++.|+++||+|+|+++++++++|+ ++
T Consensus 255 f~stlgee~Fq~g~IpSdTDfrif~-eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el 332 (834)
T KOG2194|consen 255 FASTLGEELFQSGIIPSDTDFRIFR-EYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-EL 332 (834)
T ss_pred hhhhhHHHhhhcCcCccccchHHHH-HhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hh
Confidence 9999999999 8999999999996 589999999999999999999999999999999999999999999999998 56
Q ss_pred ccchhhhhhhhccCCCCCCCeeEcchhhhhhhhccHHHHHHHhhhhHHhhhccceEEEEecCccchhhhhHHHHHHHHHH
Q 003998 241 QNAHDRASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMI 320 (780)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~V~fd~lg~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (780)
.+..++ .++ .||||++|++++.|+++.+.+||.++.... +++..+.... + ++++...+.+
T Consensus 333 ~~~~~~----------~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~~i------~l~~~~~g~~--~-~~~f~~~~~~ 392 (834)
T KOG2194|consen 333 DNSTER----------SKG-TVYFDVVGKYFLAYSESTGVILNITICISI------WLMSLRSGSS--Q-LGKFILACLL 392 (834)
T ss_pred cccccc----------CCC-ceehhhhhhhhheeehhhhhhhhhhhhhhh------hhhhhcccch--h-hhhHHHHHHH
Confidence 544333 245 899999999999999999999993332221 1221111111 2 7788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeeeeechhhHHHHHHHHHHHHHHHHHHhhhccCCcchhhhhhhhcccccchh-hH
Q 003998 321 HATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSDE-AR 399 (780)
Q Consensus 321 ~~~~~~~~~~~~~~~a~~~~~~~~~~m~w~s~~~l~~~ly~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 399 (780)
+++++++++++++++|++++.+ +.+|+||++||+++++|.||+++|+.+++.+|.+..| +.+.+..++ +.
T Consensus 393 ~i~s~~~~~~l~~~~a~~l~~v-~l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~--------~~~~~~~~~~ql 463 (834)
T KOG2194|consen 393 QILSIVVAIGLPVLVALFLDWV-GLPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSK--------RHSLEYLQHDQL 463 (834)
T ss_pred HHHHHHHHHhhHHHHHHHhhcc-cccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhcc--------ccccchhhHHHH
Confidence 9999999999999999988876 7799999999999999999999999999998766544 333333333 44
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhHHHHHHHHhhccccCCcchhhhHHhhhhHHHHHHHHHHHHHHHHhh
Q 003998 400 FWGAFGFYAMLTMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRSTLFYVVPLIPCITYSVYFGGFVVQFL 479 (780)
Q Consensus 400 ~~~~~~~~~~l~~~~~~~gi~say~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~f 479 (780)
+++. +++.|++++|++||||+|++++++++++++++++ +..+++.++..+ ..++++||++|+.+.+|.++.++.+|
T Consensus 464 ~~h~--~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~~~~~-~~~~l~~~~~~~-~~~~~i~~~~p~~~~ay~~~~~~~~f 539 (834)
T KOG2194|consen 464 LLHS--LLSILLIIMTYYGIRSAYLPLLLLLFYVISYLLN-TLTILHLCGTLY-LITLLICQVGPFLFAAYSTYSLVRTF 539 (834)
T ss_pred HHHH--HHHHHHHHheecccchhHHHHHHHHHHHHHHHHh-hceeeccCCcee-eeeeeeeehHhHHHHHHHHHHHHHee
Confidence 4443 7889999999999999999999999999999854 556666555444 44899999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhhchhHHHHhhhhhhHHHHHHHHHHH--HHhhhcCCCCcCC-CCCc
Q 003998 480 IEKMGMMGAFPSPYGYYVQDIVVAAAVGAVTGWCVGPLLPICGLWLARSSVLQFLLHLTV--LALALSSQFFPYS-TGAH 556 (780)
Q Consensus 480 vp~~Gr~G~~~~p~~~~~pd~~ia~~~~~~~~l~~~~l~Pli~~~~~~~~i~~~l~~~~~--~~~~~~~~~FPY~-~~~p 556 (780)
|||+||.|.+.| ||++||.++++.+.++++|++|+++++++++.++.++++++. +.+++|+.+|||+ ++++
T Consensus 540 ipm~Gr~g~~~n------Pd~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~ 613 (834)
T KOG2194|consen 540 IPMMGRFGNASN------PDLSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTV 613 (834)
T ss_pred eccccccCCCCC------chHHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccc
Confidence 999999999999 899999999999999999999999976555566665655543 3446799999999 7889
Q ss_pred ceEEEEEEEEe---cCCCc-eeecccceeecCCCcccccccccchhhccccCCCCcccccccccccccceeeccccc---
Q 003998 557 KRLVFQHTFVT---ADANQ-IVESSFDFSVVDSNSFLFLFKFAPEVAKELHIGPEFSLEAANVSQRETWMVLFPVSF--- 629 (780)
Q Consensus 557 kR~~~~H~~~~---~~g~~-~~~sg~~~~~~D~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~--- 629 (780)
||+.++|+.|+ ++|++ +.|||||++.+|||+.+.+...... ..+... ..|.|+.++ +|+.|+++
T Consensus 614 ~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~------~~~~~~--~~~~~~~~~-~c~~p~y~w~~ 684 (834)
T KOG2194|consen 614 QRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSN------LTDLSS--VQADCDDEM-MCGMPVYNWIK 684 (834)
T ss_pred eeEEEEecccceecccCceeecccceeeeecccccccCCcchhhc------cccccc--ccccccccc-cCCceeeeccc
Confidence 99999997555 77877 7899999999999987654332221 112222 234456667 67777664
Q ss_pred cccCceeccCCCCCcccccCCcceee-cCcCcccCCCCceEEEEEEEeCCcceEEEEeecCCeeeeeccccCCCCCCCcc
Q 003998 630 LFSKSLKFPATSDEISKQYEYFPYLS-TSKPHTTSGDGSRRVYLELSLGSLEEVWVAVLNITGPLSNWSFADNKVPVPEI 708 (780)
Q Consensus 630 ~~~~s~wlP~~~~~~~~~~~~~~~L~-~~k~~~~~~~~~rr~~f~l~~p~~m~~~~~p~~~~~~l~~WSf~~~~~p~~~~ 708 (780)
.+..++|+|.++|...+ ..|.++ ++|+++ ++++.|++|++++++||++|++|+++ +++.+|||.++++..
T Consensus 685 ~~~~~~~vp~~~~v~~~---~~~~l~l~sk~~~--~~~~~r~~~~i~~~d~~s~~i~p~~d-~~~~~wsf~~~~~~~--- 755 (834)
T KOG2194|consen 685 PREQSLWVPNPEPVIGP---YPPNLKLLSKTSL--DNGNLRYEFSITGTDHISLFISPLND-VKVLDWSFTTSPLTE--- 755 (834)
T ss_pred cCccceEecCCccccCC---CCceEEEeecccc--CCCceEEEEEEeccCceEEEEEecCC-ceEEEEeccCCcccc---
Confidence 56678999998766544 457777 689888 67899999999999999999999995 899999998775322
Q ss_pred cCCCCCeEEEEEecCCCCceEEEEEecCC----CceEEEEEEEeeee------cHHHHHHHhcCCCCeeecccccccccc
Q 003998 709 VDGGPPSYICRLSGSSHENWTFWLEASSP----ENLRVEVAVLDQVL------VDEAKKLKGLFPDWTDVTAYSSFRSSY 778 (780)
Q Consensus 709 ~~~~~~~~i~~~~G~~~~pw~Fwle~~~~----~~~~~~l~v~~h~~------~~e~~~fl~~fP~wa~~~~w~a~~~~y 778 (780)
..++||+++++|.++.|++||+|+++. +.+ +++++.+||. +++.++|+++|||||++++|++.|.+|
T Consensus 756 --~~~~~~i~~~yg~~~~p~~F~lel~~~~~~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~ 832 (834)
T KOG2194|consen 756 --NKTPYHIYFSYGLDSTPLNFWLELEKEEGVTDVP-FKLGVSAHYIHDLELITPEYKEFLETLPSWAATVDWSTSYESW 832 (834)
T ss_pred --cCCceEEEEEeecCCCCceEEEEEeeccCccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCCchhhccccccchhhe
Confidence 334899999999999999999999864 445 9999999995 899999999999999999999999999
Q ss_pred cC
Q 003998 779 TF 780 (780)
Q Consensus 779 ~f 780 (780)
+|
T Consensus 833 ~~ 834 (834)
T KOG2194|consen 833 IF 834 (834)
T ss_pred eC
Confidence 86
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=2.6e-30 Score=258.22 Aligned_cols=168 Identities=34% Similarity=0.454 Sum_probs=130.3
Q ss_pred CeEEEeeeccCCC------CCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHh-cCcccc
Q 003998 52 PSVLMNGHFDGPL------SSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA-HKWRDS 124 (780)
Q Consensus 52 ~~Vll~aH~DS~~------~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~-h~~~~~ 124 (780)
++|+++|||||++ .++||+||++|||+|||+||.|++.+.+|+|+|+|+||+|||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 889999999999999999999999777889999999999999999999999973 367889
Q ss_pred eeEEEEeccCCCCCcceEEecCCC-CchhhHhhhhccCccccccccccC--CCCCCCCchHHHhhcCCCCcEEEEEEec-
Q 003998 125 VGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVF--PVIPGDTDYRIFSQDYGDIPGLDIIFLI- 200 (780)
Q Consensus 125 i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~~~~~~P~~~~~~~~~f--~~ips~TD~~~F~~~~~GIPgld~a~~~- 200 (780)
+.++||+|++|.++.....+..+. ++..+.+.+....+.......+.. ...+..|||.+|.+ .|||++.+....
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~--~gip~~~~~~~~~ 158 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK--AGIPAVTLSSTDG 158 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT--TT-EEEEEEESSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc--CCEeEEEEEecCC
Confidence 999999999999988888877663 222233333333343333322222 34456799999974 899999999877
Q ss_pred CCCCCCCcCCCcCCCCHHHHH
Q 003998 201 GGYYYHTSHDTVDRLLPGSVQ 221 (780)
Q Consensus 201 ~~~~YHT~~Dt~d~id~~~lq 221 (780)
..+.|||..||++++|+++||
T Consensus 159 ~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 159 YNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp SGTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCCcccChhhcCCccCC
Confidence 567999999999999999987
No 3
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.96 E-value=4.1e-29 Score=291.07 Aligned_cols=278 Identities=24% Similarity=0.241 Sum_probs=192.7
Q ss_pred EeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHH---hcCCCCCCCEEEEEeCcc
Q 003998 29 SLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTI---DSGWIPPRPIIFLFNGAE 105 (780)
Q Consensus 29 ~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~---~~~~~p~r~IiFlf~~aE 105 (780)
+....+++||||+|+|.. +||++|++++|+|||. +||.|+++|+|+|+|++|++. +.||+|+|+|+|++|+||
T Consensus 332 ~~~~~ki~NIig~I~Gs~--epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAe 407 (702)
T KOG2195|consen 332 TREETKIQNIIGKIEGSE--EPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAE 407 (702)
T ss_pred eeeeeeeeeEEEEEecCc--CCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccch
Confidence 456789999999999974 6999999999999999 899999999999999999965 578999999999999999
Q ss_pred cCCccchHHHHHhc--CcccceeEEEEeccCCCCCcceEEecCCC-CchhhHhhhhccCccccccccccCCCCCCCCchH
Q 003998 106 ELFMLGAHGFMKAH--KWRDSVGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYR 182 (780)
Q Consensus 106 E~gl~GS~~fv~~h--~~~~~i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~~ 182 (780)
|+|++||.+|+++| .+..++.++||+|+++.++..+..+++|. ..+++--.+.+..|........+ ...+++|||.
T Consensus 408 EfGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~~v-~~~g~~Sd~~ 486 (702)
T KOG2195|consen 408 EFGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSNRV-LSLGGGSDYA 486 (702)
T ss_pred hccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEecCccHHHHHHHHHhccCCCCccccceeE-eccCCCCcch
Confidence 99999999999988 45789999999999999877787888874 22222222334445322211112 2237899999
Q ss_pred HHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCC----CHHHHHH--HHHHHHHHHHHHhcCcccc-cchhhh--------
Q 003998 183 IFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRL----LPGSVQA--RGDNLFNVLKAFSNSSKLQ-NAHDRA-------- 247 (780)
Q Consensus 183 ~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----d~~~lq~--~g~~~l~l~~~la~a~~l~-~~~~~~-------- 247 (780)
+|.. |.|||+++++|...-+.|||.+||++.+ |+.--++ ++.++...+-.++..+.++ |..++.
T Consensus 487 ~F~~-~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd~~~Y~~~l~~~~~ 565 (702)
T KOG2195|consen 487 SFLQ-FAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFDISDYADVLLKTLP 565 (702)
T ss_pred hhcc-ccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCcHHHHHHHHHHHHH
Confidence 9984 8999999999988777999999996554 5553333 3344444444445533232 221111
Q ss_pred hhhhcc---CCCCCCCeeEcchhhhhhhhccHHHHHHHhhhhHHhhhccceEEEEecCccchhhhhHHH
Q 003998 248 SFEATG---IKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSD 313 (780)
Q Consensus 248 ~~~~~~---~~~~~~~~V~fd~lg~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (780)
.+++.. ..........|+..+.++..++. ....+...........+..++..|+++|..||.|++
T Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~f~~ 633 (702)
T KOG2195|consen 566 KLEELSPDKVNFLLTIQGLFSWRLDALKAAEW-ESSELSSRFSHGDKIEPSKLRPNNDRLMLIERTFLD 633 (702)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccccccccccHHHHHhHHhhcC
Confidence 111111 11122233455555556666655 333344333344444555667779999998886654
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.90 E-value=9.9e-23 Score=221.14 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=142.0
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCC--------------CCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPL--------------SSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 99 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~--------------~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiF 99 (780)
...|||++++|+. ++.|+++||+||++ ..+||+||++|||+|||++|.|++. +++++|+|
T Consensus 96 ~g~nVIa~~~G~~----~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~f 169 (346)
T PRK10199 96 TGSTVIAAHEGKA----PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRF 169 (346)
T ss_pred ccceEEEEECCCC----CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEE
Confidence 4689999999853 36799999999985 2479999999999999999999865 47889999
Q ss_pred EEeCcccCCccchHHHHHhcCc--ccceeEEEEeccCCCCCcceEEecCCC-C-ch---hhHhhhhccCcccccc-----
Q 003998 100 LFNGAEELFMLGAHGFMKAHKW--RDSVGAVINVEASGTGGLDLVCQSGPS-S-WP---SSVYAQSAIYPMAHSA----- 167 (780)
Q Consensus 100 lf~~aEE~gl~GS~~fv~~h~~--~~~i~a~INlD~~G~gg~~~lf~~gp~-~-~l---~~~y~~~~~~P~~~~~----- 167 (780)
+++++||.|+.||+.|+++.+. .++++++||+|+++.+ ....+.+|.. . .+ .+...+.+....+..+
T Consensus 170 v~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~ 248 (346)
T PRK10199 170 VATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATTNPG 248 (346)
T ss_pred EEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHHHHcCCccccCCC
Confidence 9999999999999999997642 4689999999999875 4455555543 1 11 0101111111111111
Q ss_pred ccccC-CCCCCCCchHHHhhcCCCCcEEEEEEec-------------------CCCCCC-CcCCCcCCCCHH-------H
Q 003998 168 AQDVF-PVIPGDTDYRIFSQDYGDIPGLDIIFLI-------------------GGYYYH-TSHDTVDRLLPG-------S 219 (780)
Q Consensus 168 ~~~~f-~~ips~TD~~~F~~~~~GIPgld~a~~~-------------------~~~~YH-T~~Dt~d~id~~-------~ 219 (780)
.+..+ ......|||.+|.+ .|||++.+...+ .+..+| |.+|+.+++|.. .
T Consensus 249 ~~~~~p~g~~~rSDH~~F~~--~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~ 326 (346)
T PRK10199 249 LNKNYPKGTGCCNDAEVFDK--AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERR 326 (346)
T ss_pred ccccccCCCcCCcccHHHHh--cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHH
Confidence 11112 11235699999986 799999875322 133688 899999999753 5
Q ss_pred HHHHHHHHHHHHHHHhcCc
Q 003998 220 VQARGDNLFNVLKAFSNSS 238 (780)
Q Consensus 220 lq~~g~~~l~l~~~la~a~ 238 (780)
++...++++.++.+|++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 327 CRDVVRIMLPLVKELAKAS 345 (346)
T ss_pred HHhHHHHHHHHHHHHhccC
Confidence 5557788999999998864
No 5
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=197.29 Aligned_cols=188 Identities=26% Similarity=0.315 Sum_probs=136.1
Q ss_pred eeeeeEEEEEeCCCC--------CCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCc
Q 003998 33 RNHTNIVMRISSTDS--------QDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGA 104 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~--------~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~a 104 (780)
.+..|++++++|... ...++.+++++|+|+++.+|||+||++|+|++||+||+|++. +|+++|+|+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~a 259 (435)
T COG2234 182 LTSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGA 259 (435)
T ss_pred eEEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecc
Confidence 566777777777621 235788999999999999999999999999999999999986 4999999999999
Q ss_pred ccCCccchHHHHHhcC--cccceeEEEEeccCCCCCcceEEec--CCCCch---hhHhhhhccCccccccccccC-CCCC
Q 003998 105 EELFMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQS--GPSSWP---SSVYAQSAIYPMAHSAAQDVF-PVIP 176 (780)
Q Consensus 105 EE~gl~GS~~fv~~h~--~~~~i~a~INlD~~G~gg~~~lf~~--gp~~~l---~~~y~~~~~~P~~~~~~~~~f-~~ip 176 (780)
||.|+.||+.|++++. ..+++.++||+|+.|..++.-.++. .+.+.. .....+....+... .+ ....
T Consensus 260 EE~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 334 (435)
T COG2234 260 EESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STVQDFD 334 (435)
T ss_pred hhhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----cccCCCC
Confidence 9999999999999775 4678888999999999763222221 111111 11111111111110 11 2334
Q ss_pred CCCchHHHhhcCCCCcEEEEEEecCC-----CCCCCcCCCcCCCCHHHHHHHHHHHHHHH
Q 003998 177 GDTDYRIFSQDYGDIPGLDIIFLIGG-----YYYHTSHDTVDRLLPGSVQARGDNLFNVL 231 (780)
Q Consensus 177 s~TD~~~F~~~~~GIPgld~a~~~~~-----~~YHT~~Dt~d~id~~~lq~~g~~~l~l~ 231 (780)
..+||.+|.+ +|+|++.+...... .++||..|| ++ |...+++.+..+.+..
T Consensus 335 ~~sd~~~f~~--~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~ 390 (435)
T COG2234 335 PRSDHYPFTE--AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATL 390 (435)
T ss_pred CCCcchhhhh--cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhh
Confidence 6799999985 89999887755443 389999999 88 8888877775544443
No 6
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.53 E-value=3.4e-13 Score=145.72 Aligned_cols=203 Identities=20% Similarity=0.210 Sum_probs=122.4
Q ss_pred cccceeEEEEEEEeeeeeEEeeeCCceEeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHH
Q 003998 2 RLVIAKIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLE 81 (780)
Q Consensus 2 ~~~~~~~ev~~q~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLE 81 (780)
.++.|+|.||.+..+|+. .|.+. .++|. .++.|++++|.+|.. -|+||.||+|++.+
T Consensus 100 ~dg~Y~V~IdS~l~~G~L-----------~ygE~-----~ipG~----s~~EillsthiCHPs---mANdnLSG~~v~~~ 156 (386)
T PF09940_consen 100 PDGEYEVVIDSTLEDGSL-----------TYGEF-----VIPGE----SDEEILLSTHICHPS---MANDNLSGPAVLTF 156 (386)
T ss_dssp -SSEEEEEEEEEEES-EE-----------EEEEE-----EE--S----SS-EEEEEEE----S----TTTTHHHHHHHHH
T ss_pred CCCceEEEEeeeecCCce-----------eEEEE-----EecCC----CCCeEEEEEeccCcc---cccccccHHHHHHH
Confidence 456799999999998873 34443 56885 346799999999987 69999999999999
Q ss_pred HHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcC--cccceeEEEEeccCCCCCcceEEecCCCCchh-hHhhhh
Q 003998 82 LARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQSGPSSWPS-SVYAQS 158 (780)
Q Consensus 82 laR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~--~~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~-~~y~~~ 158 (780)
+||.|++. +.+.+.+|+|.. +.+||-.|+.+|. ..+++++-++|.|+|..|.--..++..+...+ ++.+..
T Consensus 157 La~~L~~~--~~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~v 230 (386)
T PF09940_consen 157 LAKWLKQL--PNRYTYRFLFVP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHV 230 (386)
T ss_dssp HHHHHTTS----SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHH
T ss_pred HHHHHhcC--CcCceEEEEEcc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHH
Confidence 99999976 455999999998 7899999999984 34559999999999998754433333222333 222211
Q ss_pred ccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecC-CC-CCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 159 AIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIG-GY-YYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 159 ~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~-~~-~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
.++ .+. ....+...|.++|.|+|..---++|...+.-... .| -|||..|+++.|+|+.|+..-+.+..++..|-+
T Consensus 231 l~~-~~~--~~~~~~F~~~GsDERQfcSPG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~ 307 (386)
T PF09940_consen 231 LKH-SGP--NFKIYDFLPRGSDERQFCSPGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILEN 307 (386)
T ss_dssp HHH-SSS---EEEE---S-SSTHHHHTSTTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-cCC--CceEecccccCCCcceeecCCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 110 000 0112245678999999974101244433321111 22 799999999999999999999999999988854
No 7
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.5e-13 Score=141.61 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=135.8
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC----CCCCCchhHHHHHHHHHHHHHhc----CCCCCCCEEEEE
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS----PGAGDCGSCVASMLELARLTIDS----GWIPPRPIIFLF 101 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s----pGA~Dn~sGvA~mLElaR~L~~~----~~~p~r~IiFlf 101 (780)
..+.+..|||+++... ..+++++.|||||.... -||.|.+..||+||++||.+.+. ...++-++.++|
T Consensus 100 ~g~~~f~nii~tl~~~----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvF 175 (338)
T KOG3946|consen 100 LGTRNFNNLIATLDPN----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVF 175 (338)
T ss_pred ceeeeeeeEEEecCCC----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEE
Confidence 3678899999999886 35899999999997422 48999999999999999998753 234566899999
Q ss_pred eCcccC--------CccchHHHHHhc------C-----cccceeEEEEeccCCCCCcceEEecCC-CCchhhH---hhhh
Q 003998 102 NGAEEL--------FMLGAHGFMKAH------K-----WRDSVGAVINVEASGTGGLDLVCQSGP-SSWPSSV---YAQS 158 (780)
Q Consensus 102 ~~aEE~--------gl~GS~~fv~~h------~-----~~~~i~a~INlD~~G~gg~~~lf~~gp-~~~l~~~---y~~~ 158 (780)
+||||. .+.||++.+++. + ..+++..++-+|-.|+.++++.---.. +.|..+. -.+-
T Consensus 176 FDGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl~~iE~~l 255 (338)
T KOG3946|consen 176 FDGEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRLQSIEGEL 255 (338)
T ss_pred eccHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHHHHHHHHH
Confidence 999984 678999999872 2 235666777777778776653211111 1233221 1010
Q ss_pred ------ccCccccccccccC-CCCC---CCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHH
Q 003998 159 ------AIYPMAHSAAQDVF-PVIP---GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLF 228 (780)
Q Consensus 159 ------~~~P~~~~~~~~~f-~~ip---s~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l 228 (780)
..++ .....| .... -+.||.+|.| .|+|.+.+....-..+|||+.|+..++|+.+..+++.++-
T Consensus 256 ~~~g~l~s~r----~~~~~Fq~~~~~~~veDDHiPFlr--rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr 329 (338)
T KOG3946|consen 256 ALLGLLASHR----LPPRYFQPGGLSSVVEDDHIPFLR--RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIR 329 (338)
T ss_pred HHHHHHHhcc----CCchhccccCccccccCCcchhhh--cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHH
Confidence 0111 000112 1111 3689999997 7999999887777789999999999999999988887766
Q ss_pred HHH
Q 003998 229 NVL 231 (780)
Q Consensus 229 ~l~ 231 (780)
-++
T Consensus 330 ~Fv 332 (338)
T KOG3946|consen 330 VFV 332 (338)
T ss_pred HHH
Confidence 554
No 8
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.29 E-value=6.7e-11 Score=123.44 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=114.6
Q ss_pred CeEEEeeeccCCC----CCCCCCCchhHHHHHHHHHHHHHhc---CCCCCCCEEEEEeCcccCCccchHHHHHhc-----
Q 003998 52 PSVLMNGHFDGPL----SSPGAGDCGSCVASMLELARLTIDS---GWIPPRPIIFLFNGAEELFMLGAHGFMKAH----- 119 (780)
Q Consensus 52 ~~Vll~aH~DS~~----~spGA~Dn~sGvA~mLElaR~L~~~---~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h----- 119 (780)
++|++.|.+||.. .+|||+++.+|.+++|++|++|++. ..+.+|+|+|+|+.||.+|.+||+.|+.+.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999963 5799999999999999999999864 246789999999999999999999999643
Q ss_pred C--------c-ccceeEEEEeccCCCCCcceEEec--CCC--C---chhhHhhhhccCc-c-ccccccc--cCCCCCCCC
Q 003998 120 K--------W-RDSVGAVINVEASGTGGLDLVCQS--GPS--S---WPSSVYAQSAIYP-M-AHSAAQD--VFPVIPGDT 179 (780)
Q Consensus 120 ~--------~-~~~i~a~INlD~~G~gg~~~lf~~--gp~--~---~l~~~y~~~~~~P-~-~~~~~~~--~f~~ips~T 179 (780)
| . .++|..+|.++.+|.....-++.. ++. + ...+...+..+.+ . .....+. .-..+|..
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPs- 159 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPS- 159 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcc-
Confidence 2 1 268999999999998765334433 222 1 1122222111111 1 1111111 11234543
Q ss_pred chHHHhhcCCCCcEEEEEEecC---CCCCCCcCCCcCCCCH
Q 003998 180 DYRIFSQDYGDIPGLDIIFLIG---GYYYHTSHDTVDRLLP 217 (780)
Q Consensus 180 D~~~F~~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~ 217 (780)
-...|.|.-.++||+-++-... +.+||+.+|+.++++.
T Consensus 160 S~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 160 SLQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred hHHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 4788886435799998875554 3489999999998865
No 9
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=123.34 Aligned_cols=155 Identities=25% Similarity=0.241 Sum_probs=112.3
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCc----
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFM---- 109 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl---- 109 (780)
-.+|+|+.=.|. +..++++||.|||. .|+.||-.|++...|+++.|...+ ..+-++.++|||.|+
T Consensus 177 y~y~~Ia~~~~e-----n~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 177 YDYNVIAVDGGE-----NGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEEecCCC-----CCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 467888755443 46899999999999 799999999999999999998653 456778899999987
Q ss_pred -----cchHHHHHhcCcccceeEEEEeccCCCCCcceEEecCCCCchhhHhhhhccCccccccccccCCCCCCCCchHHH
Q 003998 110 -----LGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIF 184 (780)
Q Consensus 110 -----~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~~~F 184 (780)
.||++|.++.+-.+.+.+++|+|.+|.+.. ...+-| .+.+.-.+.-+.-. -.++ .-.|-..+
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~l--v~~~~P--~L~e~~~~~g~~~v---espe------~y~Ds~~y 312 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCL--VASGAP--QLVEHALEAGAVEV---ESPE------PYCDSIMY 312 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccch--hhhcCh--HHHHHHHHhCCcee---cCCC------cccchhhh
Confidence 599999998888899999999999887533 112222 34433222111000 0011 12566667
Q ss_pred hhcCCCCcEEEEEEecC---CCCCCCcCCCcCC
Q 003998 185 SQDYGDIPGLDIIFLIG---GYYYHTSHDTVDR 214 (780)
Q Consensus 185 ~~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~ 214 (780)
.+ +|||++.+....+ +..|||+.||+.-
T Consensus 313 ~~--aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~ 343 (486)
T COG4882 313 AW--AGIPSLTIHSLWCPGVQEAYHTPRDTPAS 343 (486)
T ss_pred hh--cCCCeeEeeeccCCCccceecCCCCCchh
Confidence 65 8999999988775 3489999999853
No 10
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.08 E-value=1e-09 Score=119.14 Aligned_cols=211 Identities=19% Similarity=0.186 Sum_probs=138.7
Q ss_pred eeeEEeeeCC-ceEeeeeeeeeEEEEEe-CCCC---CCCCCeEEEeeeccCCC----CCCCCCCchhHHHHHHHHHHHHH
Q 003998 17 GSFNMIFLGH-SISLGYRNHTNIVMRIS-STDS---QDTDPSVLMNGHFDGPL----SSPGAGDCGSCVASMLELARLTI 87 (780)
Q Consensus 17 g~~~~~~~~~-~~~~~y~~~~NVi~~i~-G~~~---~~~~~~Vll~aH~DS~~----~spGA~Dn~sGvA~mLElaR~L~ 87 (780)
+.|.+.-.|. +....--.+.||.|+++ |-++ .++-+.|++.||||+.+ .++||+-||||+.++||++|.++
T Consensus 174 ngy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfS 253 (555)
T KOG2526|consen 174 NGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFS 253 (555)
T ss_pred CcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence 4455544443 22233456889999998 4331 13458999999999975 45799999999999999999998
Q ss_pred hc----CCCCCCCEEEEEeCcccCCccchHHHHHhc--CcccceeEEEEeccCCCCCcceEEec-CCC--CchhhH-hhh
Q 003998 88 DS----GWIPPRPIIFLFNGAEELFMLGAHGFMKAH--KWRDSVGAVINVEASGTGGLDLVCQS-GPS--SWPSSV-YAQ 157 (780)
Q Consensus 88 ~~----~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h--~~~~~i~a~INlD~~G~gg~~~lf~~-gp~--~~l~~~-y~~ 157 (780)
+- ..++++++.|+..+|.-...+|++.|++-- ..++|+..+|++|++|.+...+.... .|. ...... +++
T Consensus 254 kly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~ 333 (555)
T KOG2526|consen 254 KLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRR 333 (555)
T ss_pred HHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHH
Confidence 62 357789999999999999999999999832 45689999999999999855444333 332 122222 221
Q ss_pred ---hccCccccccccccCCCCCC-----CCchHHHhhcCCCCcEEEEEEecCC--CCCCCcC-CCcCCCCHHHHHHHHHH
Q 003998 158 ---SAIYPMAHSAAQDVFPVIPG-----DTDYRIFSQDYGDIPGLDIIFLIGG--YYYHTSH-DTVDRLLPGSVQARGDN 226 (780)
Q Consensus 158 ---~~~~P~~~~~~~~~f~~ips-----~TD~~~F~~~~~GIPgld~a~~~~~--~~YHT~~-Dt~d~id~~~lq~~g~~ 226 (780)
.+++-.-.. .-+...+.- .=.|..|.. ..+|+..+...... ..-.+.. |+...+|.+++-+..+.
T Consensus 334 l~svAek~~~~v--~~khkkInla~s~lAWEHErFsi--kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRl 409 (555)
T KOG2526|consen 334 LNSVAEKKNIEV--VTKHKKINLASSRLAWEHERFSI--KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRL 409 (555)
T ss_pred hhhhchhcceEE--EEEeeeEeeccchhhhhhhhhhh--hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhH
Confidence 111111000 000111211 235777864 68999988765432 2344555 88889998887765555
Q ss_pred HHHHH
Q 003998 227 LFNVL 231 (780)
Q Consensus 227 ~l~l~ 231 (780)
+.+.+
T Consensus 410 IaEAl 414 (555)
T KOG2526|consen 410 IAEAL 414 (555)
T ss_pred HHHHH
Confidence 55544
No 11
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.05 E-value=5e-10 Score=126.64 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=80.7
Q ss_pred ceEeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCccc
Q 003998 27 SISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEE 106 (780)
Q Consensus 27 ~~~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE 106 (780)
++....+...|++++++|+++ +.+.|++++|+|||+.+ |.-|+..||++.||++|.|++.+.+|+|+|.+++|..||
T Consensus 47 Gl~v~~D~~gN~~~~~~g~~~--~~~~i~~gsHlDtv~~g-G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EE 123 (406)
T TIGR03176 47 GLETRFDDVGNLYGRLVGTEF--PEETILTGSHIDTVVNG-GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEE 123 (406)
T ss_pred CCEEEEcCCCcEEEEecCCCC--CCCeEEEeccccCCCCC-CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccc
Confidence 456678889999999999763 45789999999999975 888999999999999999999989999999999999999
Q ss_pred CC-----ccchHHHHHhc
Q 003998 107 LF-----MLGAHGFMKAH 119 (780)
Q Consensus 107 ~g-----l~GS~~fv~~h 119 (780)
.+ +.||+.+..+.
T Consensus 124 g~rf~~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 124 GSRFPYVFWGSKNIFGLA 141 (406)
T ss_pred CccCCcccccHHHHhCCC
Confidence 86 99999998643
No 12
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.97 E-value=4.6e-09 Score=110.11 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=140.0
Q ss_pred ccceeEEEEEEEeeeeeEEeeeCCceEeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHH
Q 003998 3 LVIAKIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLEL 82 (780)
Q Consensus 3 ~~~~~~ev~~q~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLEl 82 (780)
++.|+|.||....+|+-. |.+- .++|+. ++.||+++|..|.. =|+||-||+|.+.-+
T Consensus 150 dgdyeVvIDae~~dG~L~-----------ygef-----i~rg~~----~~eiLlst~lCHPS---maNdn~SG~all~~l 206 (435)
T COG4310 150 DGDYEVVIDAEHEDGSLD-----------YGEF-----IHRGTS----KDEILLSTYLCHPS---MANDNLSGLALLTFL 206 (435)
T ss_pred cCCeEEEEecccccCcee-----------hhhe-----eccCCc----cceeeeeecccChh---hccCccchHHHHHHH
Confidence 456899999999998842 2211 235652 45699999999986 689999999999999
Q ss_pred HHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCc-ccceeEEEEeccCCCCCcceEEecCCCCchhh-Hhhhhcc
Q 003998 83 ARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPSSWPSS-VYAQSAI 160 (780)
Q Consensus 83 aR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~-~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~~-~y~~~~~ 160 (780)
|+.|+.. +.+.+.+|+|-. +-+||-.|..+|.. .+++++-+.+-|.|.||..-+.++..+..+.+ .-.+.-.
T Consensus 207 ak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~ 280 (435)
T COG4310 207 AKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLK 280 (435)
T ss_pred HHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcceEEEEecCCCCccceeccccchHHHHHHHHHHh
Confidence 9999965 578899999987 67999999998843 56899999999999887655555443322222 2111111
Q ss_pred CccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEE-------ecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHH
Q 003998 161 YPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIF-------LIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 161 ~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~-------~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~ 233 (780)
+- ++. ..++..+|.++|-|+|.. ||+++.. ++.-.-|||..|+++.|.|+-+...-..+++++..
T Consensus 281 ~~-~s~--~~~~dF~p~G~DERQf~s-----Pg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~ 352 (435)
T COG4310 281 HC-GSN--FKAADFLPYGSDERQFCS-----PGFNLPVGGLQRSRYGDFDGYHTSADNLDFISPEGLAGSFQMMMEMILN 352 (435)
T ss_pred cC-CcC--ceeeecccCCCchhhccC-----CCcCCchhhhhHhhcCCCccccCccccccccCHHHHHHHHHHHHHHHHH
Confidence 11 111 123356899999999973 5554431 11223799999999999999887777777887777
Q ss_pred Hh
Q 003998 234 FS 235 (780)
Q Consensus 234 la 235 (780)
+-
T Consensus 353 lE 354 (435)
T COG4310 353 LE 354 (435)
T ss_pred HH
Confidence 74
No 13
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.87 E-value=1.2e-08 Score=102.07 Aligned_cols=166 Identities=22% Similarity=0.174 Sum_probs=109.6
Q ss_pred EEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCcc-chHH
Q 003998 55 LMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML-GAHG 114 (780)
Q Consensus 55 ll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~-GS~~ 114 (780)
|+.+|+|+++. +.|+.|+..|+++++.++|.|++.+.+++++|+|++..+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999991 579999999999999999999988889999999999999999999 9999
Q ss_pred HHHhc-CcccceeEEEEeccCCCCCcceEEecCCCCchhhHhhhhccCccccccccccCCCCCCCCchHHHhhc-CCCCc
Q 003998 115 FMKAH-KWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQD-YGDIP 192 (780)
Q Consensus 115 fv~~h-~~~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~-~~GIP 192 (780)
++++. ....+....+..|....+.. . ...++.+.+...+.......... .....+..||...+.+. ..++|
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~tD~~~~~~~~~~~~~ 153 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGV---G-SDNDPPLVQALQAAAQEVGGEPP---EPVASGGGTDAGFLAEVKGLGIP 153 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEE---E-HCTCHHHHHHHHHHHHHTTSSEE---EEEEESSSSTHHHHHCHHHTTEE
T ss_pred hhhhcccccccccccccccccccccc---c-ccccHHHHHHHHHHHHHHhhccc---cccceeccccchhhhhhhccccc
Confidence 99873 22234666666664433321 0 11222233333222111111000 00234678999999730 25778
Q ss_pred EEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHH
Q 003998 193 GLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLK 232 (780)
Q Consensus 193 gld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~ 232 (780)
.+.+.... ...|++...+ +.+.+....+.+.++++
T Consensus 154 ~i~~G~~~--~~~H~~~E~i---~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 154 AIGFGPGG--SNAHTPDEYI---DIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEESCE--ESTTSTT-EE---EHHHHHHHHHHHHHHHH
T ss_pred eeeeCCCC--CCCCCCCcEe---cHHHHHHHHHHHHHHHh
Confidence 87665433 5788877654 47777777777776664
No 14
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.86 E-value=8e-09 Score=116.62 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=74.5
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC----
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL---- 107 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~---- 107 (780)
.++..||+++++|+++ +.+.|++++|+|+|+.+ |..|+..|+|++|+++|.|++.+.+|+++|.|+++.+||.
T Consensus 50 ~~~~~nl~a~~~g~~~--~~~~l~~~~H~DtV~~g-g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~ 126 (401)
T TIGR01879 50 FDEVGNLIGRKEGTEP--PLEVVLSGSHIDTVVNG-GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFP 126 (401)
T ss_pred EecCCcEEEEecCCCC--CCCEEEEecccccCCCC-CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcc
Confidence 3445799999998642 34789999999999964 7889999999999999999999889999999999999997
Q ss_pred -CccchHHHHHhc
Q 003998 108 -FMLGAHGFMKAH 119 (780)
Q Consensus 108 -gl~GS~~fv~~h 119 (780)
|+.||+.++.+.
T Consensus 127 ~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 127 YGMWGSRNMVGLA 139 (401)
T ss_pred cccccHHHHhccc
Confidence 889999998754
No 15
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.83 E-value=9.7e-09 Score=121.46 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=75.9
Q ss_pred EeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-
Q 003998 29 SLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL- 107 (780)
Q Consensus 29 ~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~- 107 (780)
....+...||+++++|+++ +.+.|++++|+|||+.+ |.-|+..||+++||++|.|++.+.+++++|.|++|.+||.
T Consensus 231 ~v~~D~~GNl~~~~~g~~~--~~~~v~~gsHlDTV~~g-G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~ 307 (591)
T PRK13590 231 EVHIDAVGNVVGRYKGSTP--QAKRLLTGSHYDTVRNG-GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQ 307 (591)
T ss_pred eeeECCCCCEEEEecCCCC--CCCeEEEecccccCCCC-CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccc
Confidence 4556778999999999753 34789999999999965 7789999999999999999999888899999999999997
Q ss_pred ----CccchHHHHH
Q 003998 108 ----FMLGAHGFMK 117 (780)
Q Consensus 108 ----gl~GS~~fv~ 117 (780)
++.||+.+..
T Consensus 308 rF~~~~~GS~~~~G 321 (591)
T PRK13590 308 RYKATFLGSGALIG 321 (591)
T ss_pred cCCccccchHHHhC
Confidence 5999999865
No 16
>PRK09133 hypothetical protein; Provisional
Probab=98.82 E-value=1.7e-08 Score=116.41 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=81.4
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
+..||+++++|++ +.+.|++++|+|++|. +.|+.|+.+|+|++|++++.|++.+.++
T Consensus 87 ~~~nli~~~~g~~---~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~ 163 (472)
T PRK09133 87 RKGNLVARLRGTD---PKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKP 163 (472)
T ss_pred CceeEEEEecCCC---CCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCC
Confidence 4579999998864 2367999999999873 3699999999999999999999888788
Q ss_pred CCCEEEEEeCccc-CCccchHHHHHhcCcccceeEEEEecc
Q 003998 94 PRPIIFLFNGAEE-LFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 94 ~r~IiFlf~~aEE-~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
+++|.|++..+|| .|..|++.++++++..-+..++|+ |.
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 9999999999999 899999999987653334567888 84
No 17
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.81 E-value=1e-08 Score=121.14 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=78.6
Q ss_pred ceE-eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcc
Q 003998 27 SIS-LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAE 105 (780)
Q Consensus 27 ~~~-~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aE 105 (780)
++. ...+...||+++++|+++ +.+.|++++|+|||+.+ |.-|...||+++||++|.|++.+.+++++|.++.|.+|
T Consensus 228 Gl~~v~~D~~gNv~~~~~g~~~--~~p~v~~gSHlDTV~~g-G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~E 304 (591)
T PRK13799 228 GFDEVEIDAVGNVVGRYKAADD--DAKTLITGSHYDTVRNG-GKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEE 304 (591)
T ss_pred CCCeEeECCCCCEEEEcCCCCC--CCCeEEEeccccccCCC-CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 344 567788999999999753 45789999999999975 88899999999999999999999999999999999999
Q ss_pred cC-----CccchHHHHH
Q 003998 106 EL-----FMLGAHGFMK 117 (780)
Q Consensus 106 E~-----gl~GS~~fv~ 117 (780)
|. ++.||+.+.-
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 305 EGQRFKATFLGSGALIG 321 (591)
T ss_pred CccCCCccccchHHHhC
Confidence 97 8999999975
No 18
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.76 E-value=2.7e-08 Score=112.81 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=71.8
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL----- 107 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~----- 107 (780)
....|++++++|+++ +.+.|++++|+|+++.+ |+.|+.+|+|++|++++.|++.+.+++++|.|+++.+||.
T Consensus 58 ~~~~nlia~~~g~~~--~~~~l~~~~H~DtVp~~-g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~ 134 (414)
T PRK12890 58 DAAGNLFGRLPGRDP--DLPPLMTGSHLDTVPNG-GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGP 134 (414)
T ss_pred cCCCcEEEEeCCCCC--CCCEEEEeCcccCCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCC
Confidence 345699999988632 34689999999999963 7789999999999999999988878899999999999997
Q ss_pred CccchHHHHHh
Q 003998 108 FMLGAHGFMKA 118 (780)
Q Consensus 108 gl~GS~~fv~~ 118 (780)
|+.||+.+...
T Consensus 135 ~~~G~~~~~~~ 145 (414)
T PRK12890 135 SMIGSRALAGT 145 (414)
T ss_pred ccccHHHHHcc
Confidence 77999988764
No 19
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.75 E-value=2.5e-08 Score=113.13 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=72.1
Q ss_pred eeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC--
Q 003998 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF-- 108 (780)
Q Consensus 31 ~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~g-- 108 (780)
......|++++++|.++ +.+.|++++|+|+|+.+ |..|+.+|++++|+++|.|++.+.+++++|.|+++.+||.|
T Consensus 58 ~~~~~gNl~a~~~g~~~--~~~~l~~~~H~DtVp~g-g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f 134 (414)
T PRK12891 58 RVDAMGNLFARRAGRDP--DAAPVMTGSHADSQPTG-GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRF 134 (414)
T ss_pred EECCCCCEEEEecCCCC--CCCeEEEEecccCCCCC-ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcC
Confidence 34456699999998642 34789999999999964 67899999999999999999988899999999999999985
Q ss_pred ---ccchHHHHH
Q 003998 109 ---MLGAHGFMK 117 (780)
Q Consensus 109 ---l~GS~~fv~ 117 (780)
+.||+.+..
T Consensus 135 ~~~~~Gs~~~~g 146 (414)
T PRK12891 135 APSMVGSGVFFG 146 (414)
T ss_pred CcccccHHHHhC
Confidence 689998854
No 20
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.73 E-value=7.1e-08 Score=109.31 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=79.5
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPI 97 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-----------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~I 97 (780)
..|++++++|++ .+.|++.+|+|+++. +.|+.|+.+|+|++|++++.|++.+.+++.+|
T Consensus 87 ~~~lia~~~g~~----~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i 162 (410)
T PRK06133 87 GDMVVATFKGTG----KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTL 162 (410)
T ss_pred CCeEEEEECCCC----CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 469999998752 357999999999973 36899999999999999999998777778899
Q ss_pred EEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 98 IFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 98 iFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
+|+|..+||.|..|++.++++.. .+...+|+.|..
T Consensus 163 ~~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~ 197 (410)
T PRK06133 163 TVLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPG 197 (410)
T ss_pred EEEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCC
Confidence 99999999999999999998644 245678888843
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.72 E-value=5e-08 Score=108.96 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 003998 37 NIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWIPPR 95 (780)
Q Consensus 37 NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~r 95 (780)
|+++.++|++ +.+.|++.+|+|+++.. .|+.|+.+|+|++|++++.|++.+.++++
T Consensus 53 ~~~~~~~g~~---~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~ 129 (375)
T TIGR01910 53 KVVVKEPGNG---NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNG 129 (375)
T ss_pred ceEEeccCCC---CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCc
Confidence 6788888753 24679999999999853 58999999999999999999987777889
Q ss_pred CEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 96 PIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 96 ~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
+|+|+|+.+||.|..|++.++++. ..++....|..|..
T Consensus 130 ~i~~~~~~~EE~g~~G~~~~~~~~-~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 130 NIILQSVVDEESGEAGTLYLLQRG-YFKDADGVLIPEPS 167 (375)
T ss_pred cEEEEEEcCcccCchhHHHHHHcC-CCCCCCEEEECCCC
Confidence 999999999999999999999853 23335566666643
No 22
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.70 E-value=7.6e-08 Score=109.39 Aligned_cols=97 Identities=27% Similarity=0.268 Sum_probs=80.4
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..||+++++|+++ ...+.|++++|+|+++. +.|+.|+.+|+|++|++++.|++.+.+
T Consensus 61 ~~~nvia~~~g~~~-~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~ 139 (421)
T PRK08596 61 NDPNVVGVKKGTES-DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIE 139 (421)
T ss_pred CCceEEEEecCCCC-CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCC
Confidence 35799999988642 12357999999999753 269999999999999999999988878
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
++.+|.|+|.++||.|..|++.++++.. +....|+.|..
T Consensus 140 ~~~~v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 140 LPGDLIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred CCCcEEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 8899999999999999999999998643 34677887853
No 23
>PRK07473 carboxypeptidase; Provisional
Probab=98.63 E-value=2e-07 Score=104.58 Aligned_cols=96 Identities=24% Similarity=0.300 Sum_probs=78.6
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEE
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 98 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-----------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~Ii 98 (780)
.|++++++|.++ ..+.|++++|+|+++. ++|+.|+.+|+|+||.++|.|++.+.+++.+|.
T Consensus 62 ~~~~~~~~~~~~--~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~ 139 (376)
T PRK07473 62 DCVRARFPHPRQ--GEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPIT 139 (376)
T ss_pred CeEEEEeCCCCC--CCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 489999976421 3467999999999842 479999999999999999999887766677899
Q ss_pred EEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 99 FLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 99 Flf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
|++..+||.|..|++.+++++.. +..++|..|..+
T Consensus 140 ~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 140 VLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 99999999999999999986533 346778888654
No 24
>PRK07906 hypothetical protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=107.73 Aligned_cols=85 Identities=33% Similarity=0.524 Sum_probs=72.9
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
+..|++++++|+++ ..+.|++++|+|+++. +.|+.|+.+|+|++|+++++|++.+.++
T Consensus 50 ~~~nv~~~~~g~~~--~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~ 127 (426)
T PRK07906 50 GRANVVARLPGADP--SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRP 127 (426)
T ss_pred CceEEEEEEeCCCC--CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCC
Confidence 45799999988642 3467999999999974 2599999999999999999999888889
Q ss_pred CCCEEEEEeCcccCC-ccchHHHHHhcC
Q 003998 94 PRPIIFLFNGAEELF-MLGAHGFMKAHK 120 (780)
Q Consensus 94 ~r~IiFlf~~aEE~g-l~GS~~fv~~h~ 120 (780)
+++|.|+|+.+||.| ..|++.++++++
T Consensus 128 ~~~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 128 PRDLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred CccEEEEEecCcccchhhhHHHHHHHHH
Confidence 999999999999996 569999988653
No 25
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=98.62 E-value=2.4e-07 Score=104.02 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=76.5
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..|++++++|.+ +.+.|++++|+|+++. +.|+.|+..|++++|++++.|.+.+.++
T Consensus 63 ~~nl~~~~~g~~---~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~ 139 (400)
T PRK13983 63 RPNIVAKIPGGD---GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRP 139 (400)
T ss_pred CccEEEEecCCC---CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCC
Confidence 589999998853 2358999999999984 2579999999999999999999887788
Q ss_pred CCCEEEEEeCcccCCcc-chHHHHHhcCc-ccceeEEEEec
Q 003998 94 PRPIIFLFNGAEELFML-GAHGFMKAHKW-RDSVGAVINVE 132 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~-GS~~fv~~h~~-~~~i~a~INlD 132 (780)
+++|.|+|..+||.|.. |++.++++++. ..+..+++..|
T Consensus 140 ~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 140 KYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CCcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 99999999999999885 88888876532 22334455444
No 26
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.60 E-value=1.5e-07 Score=106.59 Aligned_cols=84 Identities=31% Similarity=0.323 Sum_probs=71.7
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----C
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL-----F 108 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~-----g 108 (780)
+..|++++++|.++ +++.|++++|+|+++.+ |..|+..|+|+|+++++.|++.+.+++++|+|+++.+||. |
T Consensus 58 ~~~nl~a~~~g~~~--~~~~l~l~gH~DtVp~~-g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~ 134 (413)
T PRK09290 58 AVGNLFGRLEGRDP--DAPAVLTGSHLDTVPNG-GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPA 134 (413)
T ss_pred CCCcEEEEecCCCC--CCCEEEEecCccCCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCc
Confidence 45699999987531 34679999999999853 6779999999999999999988888899999999999998 5
Q ss_pred ccchHHHHHhcC
Q 003998 109 MLGAHGFMKAHK 120 (780)
Q Consensus 109 l~GS~~fv~~h~ 120 (780)
+.|++.++++++
T Consensus 135 ~~G~~~~~~~~~ 146 (413)
T PRK09290 135 MLGSRVFTGALT 146 (413)
T ss_pred cccHHHHHcccC
Confidence 789999987653
No 27
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.59 E-value=2.2e-07 Score=105.55 Aligned_cols=97 Identities=21% Similarity=0.080 Sum_probs=76.2
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
+..|++++++|++ +++.|++.+|+|++|. +.|+.|+.+|+|++|.+++.|++.+.+++
T Consensus 70 ~~~nlia~~~g~~---~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~ 146 (427)
T PRK13013 70 PRWNLVARRQGAR---DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFA 146 (427)
T ss_pred CcceEEEEecCCC---CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCC
Confidence 3579999998753 3468999999999863 25899999999999999999998877788
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcCccc--ceeEEEEecc
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHKWRD--SVGAVINVEA 133 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~~~~--~i~a~INlD~ 133 (780)
++|+|+|..+||.|..|...++.+....+ ++.++|..|.
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~~ep 187 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVIIPEP 187 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHhcCCccccCCCEEEEecC
Confidence 99999999999998765555554443322 4566776663
No 28
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.59 E-value=1.7e-07 Score=106.17 Aligned_cols=85 Identities=32% Similarity=0.321 Sum_probs=72.4
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC----
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF---- 108 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~g---- 108 (780)
.+..|++++++|+++ +++.|++++|+|+++. .|..|+..|+|++|++++.|++.+.+++++|+|+|+.+||.|
T Consensus 60 ~~~~n~~a~~~g~~~--~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~ 136 (412)
T PRK12893 60 DAIGNLFGRRAGTDP--DAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAP 136 (412)
T ss_pred cCCCcEEEEeCCCCC--CCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccccccc
Confidence 345699999988642 3478999999999985 367799999999999999999988788999999999999986
Q ss_pred -ccchHHHHHhcC
Q 003998 109 -MLGAHGFMKAHK 120 (780)
Q Consensus 109 -l~GS~~fv~~h~ 120 (780)
+.|+..+.++++
T Consensus 137 ~~~G~~~~~~~~~ 149 (412)
T PRK12893 137 AMLGSGVFTGALP 149 (412)
T ss_pred ccccHHHHhCcCC
Confidence 889998886543
No 29
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.58 E-value=1.9e-07 Score=105.66 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=72.0
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC----
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL---- 107 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~---- 107 (780)
..+..|++++++|+++ .+.|++++|+|+|+.+ |-.|+..|+|++|++++.|++.+.+++++|.|+++.+||.
T Consensus 58 ~~~~~nl~a~~~g~~~---~~~l~l~gH~DtVp~~-g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~ 133 (412)
T PRK12892 58 IDGIGNVFGRLPGPGP---GPALLVGSHLDSQNLG-GRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFT 133 (412)
T ss_pred EcCCCcEEEEecCCCC---CCeEEEEccccCCCCC-CcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCccccccc
Confidence 3445699999998642 3679999999999953 5678889999999999999998888999999999999998
Q ss_pred -CccchHHHHHhc
Q 003998 108 -FMLGAHGFMKAH 119 (780)
Q Consensus 108 -gl~GS~~fv~~h 119 (780)
|+.||+.+++++
T Consensus 134 ~~~~Gs~~~~~~~ 146 (412)
T PRK12892 134 PGFLGSRAYAGRL 146 (412)
T ss_pred CccccHHHHHcCC
Confidence 578999998754
No 30
>PRK07338 hypothetical protein; Provisional
Probab=98.58 E-value=2.5e-07 Score=104.34 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=77.6
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 96 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-----------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~ 96 (780)
...|++++++|.. ++.|++++|+|+++. ++|+.|+.+|+|++|++++.|++.+.+++.+
T Consensus 79 ~~~nl~a~~~~~~----~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~ 154 (402)
T PRK07338 79 HGPALHVSVRPEA----PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLG 154 (402)
T ss_pred cCCeEEEEECCCC----CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3469999997642 235999999999863 2589999999999999999998877677889
Q ss_pred EEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 97 IIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 97 IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
|.|+|..+||.|..|++.+++++.. +..+.+.+|..
T Consensus 155 i~~~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 155 YDVLINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEEEEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 9999999999999999999987642 34566777753
No 31
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.57 E-value=2.8e-07 Score=103.02 Aligned_cols=93 Identities=26% Similarity=0.339 Sum_probs=76.5
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..|+++++ |.+ + +.|++.+|+|+++. +.|+.|+..|+|++|++++.|.+.+.++
T Consensus 48 ~~~l~a~~-g~~---~-~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~ 122 (377)
T PRK08588 48 RANLVAEI-GSG---S-PVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLL 122 (377)
T ss_pred CceEEEEe-CCC---C-ceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCC
Confidence 46999998 432 2 67999999999874 2578899999999999999999888788
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
+++|.|+|..+||.|..|++.++++. +.++..++|..|.
T Consensus 123 ~~~i~l~~~~dEE~g~~G~~~~~~~~-~~~~~d~~i~~ep 161 (377)
T PRK08588 123 NGTIRLLATAGEEVGELGAKQLTEKG-YADDLDALIIGEP 161 (377)
T ss_pred CCcEEEEEEcccccCchhHHHHHhcC-ccCCCCEEEEecC
Confidence 89999999999999999999999853 3345556666563
No 32
>PRK09104 hypothetical protein; Validated
Probab=98.57 E-value=3e-07 Score=105.87 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=80.1
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------------CCCCCCchhHHHHHHHHHHHHHh
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------------SPGAGDCGSCVASMLELARLTID 88 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------------spGA~Dn~sGvA~mLElaR~L~~ 88 (780)
..||+++++|+++ ..+.|++.+|+|++|. +.|+.|+..|+|++|++++.|++
T Consensus 68 ~~~l~a~~~g~~~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~ 145 (464)
T PRK09104 68 HPMVVAHHEGPTG--DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKA 145 (464)
T ss_pred CCEEEEEecCCCC--CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 4699999987532 3468999999999652 25789999999999999999998
Q ss_pred cCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 89 SGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 89 ~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
.+.+++.+|+|++.+.||.|-.|...++.+.....+..++|..|..
T Consensus 146 ~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~ 191 (464)
T PRK09104 146 VTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDTG 191 (464)
T ss_pred hcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCCC
Confidence 7656778999999999999999999999864322356888988843
No 33
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.55 E-value=3e-07 Score=102.01 Aligned_cols=80 Identities=29% Similarity=0.396 Sum_probs=69.1
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------CCCC----CCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGA----GDCGSCVASMLELARLTIDSGWIPPRP 96 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------spGA----~Dn~sGvA~mLElaR~L~~~~~~p~r~ 96 (780)
..|++++++|++ +.+.|++++|+|+++. +.|+ .|+.+|+|++|++++.|++.+ .++++
T Consensus 49 ~~~~~~~~~g~~---~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~ 124 (361)
T TIGR01883 49 DNNLIARLPGTV---KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGT 124 (361)
T ss_pred CceEEEEEeCCC---CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCC
Confidence 689999998863 3467999999999984 3566 799999999999999998865 57789
Q ss_pred EEEEEeCcccCCccchHHHHHh
Q 003998 97 IIFLFNGAEELFMLGAHGFMKA 118 (780)
Q Consensus 97 IiFlf~~aEE~gl~GS~~fv~~ 118 (780)
|+|+|+.+||.|..|++.+.++
T Consensus 125 v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 125 IEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred EEEEEEcccccCchhHhHhChh
Confidence 9999999999999999999864
No 34
>PRK07907 hypothetical protein; Provisional
Probab=98.51 E-value=4.6e-07 Score=103.90 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=77.9
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..|++++++|+. +.+.|++++|+|+++. +.|+.|+.+|+|++|++++.| +.+
T Consensus 69 ~~~nl~a~~~~~~---~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~ 142 (449)
T PRK07907 69 GAPAVIGTRPAPP---GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGD 142 (449)
T ss_pred CCCEEEEEecCCC---CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccC
Confidence 4579999998752 3468999999999874 259999999999999999999 335
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
++++|.|++.+.||.|..|++.++++++...+..++|..|..+
T Consensus 143 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 143 LPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred CCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 6789999999999999999999998764333456678777543
No 35
>PRK06837 acetylornithine deacetylase; Provisional
Probab=98.50 E-value=5.5e-07 Score=102.60 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=72.5
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcC
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSG 90 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~ 90 (780)
+.+..||+++++|.++ +.+.|++.+|+|++|.+ .|+.|+..|++++|.+++.|++.+
T Consensus 80 ~~~~~nl~a~~~g~~~--~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~ 157 (427)
T PRK06837 80 YSGAPNVVGTYRPAGK--TGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAG 157 (427)
T ss_pred cCCCceEEEEecCCCC--CCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcC
Confidence 4467899999988642 24689999999999853 399999999999999999999888
Q ss_pred CCCCCCEEEEEeCcccCCccchHHHHHh
Q 003998 91 WIPPRPIIFLFNGAEELFMLGAHGFMKA 118 (780)
Q Consensus 91 ~~p~r~IiFlf~~aEE~gl~GS~~fv~~ 118 (780)
.+++++|.|+|+.+||.+..|+...+.+
T Consensus 158 ~~~~~~i~~~~~~dEE~~g~g~~~~~~~ 185 (427)
T PRK06837 158 LAPAARVHFQSVIEEESTGNGALSTLQR 185 (427)
T ss_pred CCCCCcEEEEEEeccccCCHhHHHHHhc
Confidence 7889999999999999888888777653
No 36
>PRK05469 peptidase T; Provisional
Probab=98.49 E-value=9.1e-07 Score=100.13 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=70.0
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------------------------------
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------------------------------------------- 66 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s--------------------------------------------- 66 (780)
..+..||+++++|+.. ++.+.|++.+|+|+++..
T Consensus 52 ~~~~~~v~~~~~g~~~-~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 52 LDENGYVMATLPANVD-KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred ECCCeEEEEEecCCCC-CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 3456799999988631 245789999999999642
Q ss_pred -CCC----CCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHh
Q 003998 67 -PGA----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA 118 (780)
Q Consensus 67 -pGA----~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~ 118 (780)
.|+ .|+.+|+|+||.+++.|++.+..++.+|+|+|..+||.| .|++.++.+
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 255 999999999999999998876667789999999999998 899988743
No 37
>PRK13381 peptidase T; Provisional
Probab=98.48 E-value=9e-07 Score=100.07 Aligned_cols=95 Identities=17% Similarity=0.274 Sum_probs=74.6
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC----------------------------------------------
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------------------------------- 66 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------------------------------- 66 (780)
.+..||+++++|+++ ..+.|++++|+|+++..
T Consensus 52 ~~~~nvi~~~~g~~~--~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 129 (404)
T PRK13381 52 DEHAIVTAKLPGNTP--GAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFS 129 (404)
T ss_pred cCCeEEEEEEecCCC--CCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeC
Confidence 455699999988642 23789999999999743
Q ss_pred CCC----CCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 67 PGA----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 67 pGA----~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
.|+ .|+.+|+|+||.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+. +. ....+.+|.
T Consensus 130 rG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~~-~~--~d~~~~~~~ 196 (404)
T PRK13381 130 DGTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLAR-FP--VDFAYTIDC 196 (404)
T ss_pred CCccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHhc-CC--CCEEEEecC
Confidence 257 899999999999999998764 4577999999999999999999998642 22 334455553
No 38
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=98.43 E-value=7.9e-07 Score=102.82 Aligned_cols=98 Identities=26% Similarity=0.323 Sum_probs=73.6
Q ss_pred eeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC------------------------CCCC---CchhHHHHHHHHH
Q 003998 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS------------------------PGAG---DCGSCVASMLELA 83 (780)
Q Consensus 31 ~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s------------------------pGA~---Dn~sGvA~mLEla 83 (780)
...+..|++++++|+...++.+.|++++|+|+++.. +|+. |++.|+|++|+++
T Consensus 42 ~~~~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~ 121 (477)
T TIGR01893 42 KQDEVGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAIL 121 (477)
T ss_pred EEeCCCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHH
Confidence 344567999999875321234679999999999742 3553 9999999999988
Q ss_pred HHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 84 RLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 84 R~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
|. . ..++++|.++|+.+||.|+.||+.+..+. .+....+|.|..+
T Consensus 122 ~~---~-~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~~ 166 (477)
T TIGR01893 122 ED---N-NLKHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSEE 166 (477)
T ss_pred hc---C-CCCCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCCC
Confidence 75 2 23567999999999999999999997632 2336678888543
No 39
>PRK08201 hypothetical protein; Provisional
Probab=98.43 E-value=8.8e-07 Score=101.75 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=78.7
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..||+++++|.. +.+.|++.+|+|+++. +.|+.|+..|+|++|++++.|.+.+.+
T Consensus 65 ~~~~l~a~~~~~~---~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~ 141 (456)
T PRK08201 65 GHPIVYADWLHAP---GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGT 141 (456)
T ss_pred CCCEEEEEecCCC---CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCC
Confidence 3468999887642 3467999999999763 258999999999999999999876556
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
++++|.|++..+||.|..|+..++++++..-+..++|..|..+
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~~ 184 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTTL 184 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCCc
Confidence 7789999999999999999999998753211235677777543
No 40
>PRK07079 hypothetical protein; Provisional
Probab=98.43 E-value=9.3e-07 Score=101.98 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=78.0
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC----------------------CCCCCCchhHHHHHHHHHHHHHhc-C
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----------------------SPGAGDCGSCVASMLELARLTIDS-G 90 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~----------------------spGA~Dn~sGvA~mLElaR~L~~~-~ 90 (780)
+..||++++.|.. +.+.|++++|+|+++. +.|+.|+.+|+|++|++++.|.+. +
T Consensus 71 ~~~~vva~~~~~~---~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~ 147 (469)
T PRK07079 71 GGPFLIAERIEDD---ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARG 147 (469)
T ss_pred CCCEEEEEeCCCC---CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcC
Confidence 3569999986642 3467999999999862 249999999999999999998754 4
Q ss_pred CCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 91 WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 91 ~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
.+++++|+|++.++||.|..|++.++++++...+..++|..|.
T Consensus 148 ~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~ 190 (469)
T PRK07079 148 GRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDG 190 (469)
T ss_pred CCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCC
Confidence 6788999999999999999999999998742223456777664
No 41
>PRK08262 hypothetical protein; Provisional
Probab=98.42 E-value=8.8e-07 Score=102.63 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=70.6
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC-----------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-----------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
.|+++.++|+++ ..+.|++.+|+|+++. +.|+.|+.+|+|++|.+++.|++.+.+
T Consensus 98 ~~vv~~~~g~~~--~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~ 175 (486)
T PRK08262 98 HSLLYTWKGSDP--SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQ 175 (486)
T ss_pred ccEEEEEECCCC--CCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCC
Confidence 689999988642 2267999999999874 249999999999999999999988777
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHh
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKA 118 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~ 118 (780)
++++|+|+|.++||.|..|++.+++.
T Consensus 176 l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 176 PRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCCeEEEEEecccccCCcCHHHHHHH
Confidence 88999999999999998899999874
No 42
>PRK06915 acetylornithine deacetylase; Validated
Probab=98.40 E-value=8.8e-07 Score=100.61 Aligned_cols=94 Identities=22% Similarity=0.215 Sum_probs=76.2
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCC
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGW 91 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~ 91 (780)
....||+++++|.+ +.+.|++.+|+|++|. +.|+.|+.+|++++|.+++.|++.+.
T Consensus 78 ~~~~nlia~~~g~~---~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~ 154 (422)
T PRK06915 78 SDSPNIVATLKGSG---GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGI 154 (422)
T ss_pred CCCceEEEEEcCCC---CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCC
Confidence 34689999998864 2367999999999874 25899999999999999999998877
Q ss_pred CCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEec
Q 003998 92 IPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 92 ~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD 132 (780)
+++.+|.|++..+||.|..|+...+.+. + +..++|.-|
T Consensus 155 ~~~~~v~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~i~~e 192 (422)
T PRK06915 155 ELKGDVIFQSVIEEESGGAGTLAAILRG-Y--KADGAIIPE 192 (422)
T ss_pred CCCCcEEEEEecccccCCcchHHHHhcC-c--CCCEEEECC
Confidence 8889999999999999888998877642 2 234555444
No 43
>PRK06446 hypothetical protein; Provisional
Probab=98.40 E-value=1.1e-06 Score=100.35 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=74.3
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..|+++++++. +.+.|++++|+|++|. +.||.|+.+|+|++|.+++.+.+.+ ++
T Consensus 50 ~~~lia~~~~~----~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~ 124 (436)
T PRK06446 50 HPVVYGEINVG----AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KL 124 (436)
T ss_pred CCEEEEEecCC----CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CC
Confidence 57999998642 2367999999999763 2599999999999999999987654 57
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
+.+|.|++..+||.|..|++.++++++..-+..++|. |..
T Consensus 125 ~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~-E~~ 164 (436)
T PRK06446 125 NVNVKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM-EGA 164 (436)
T ss_pred CCCEEEEEEcccccCCHhHHHHHHHHHHHhCCCEEEE-CCC
Confidence 7899999999999999999999988652222345554 543
No 44
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.39 E-value=1.1e-06 Score=96.70 Aligned_cols=98 Identities=26% Similarity=0.293 Sum_probs=80.6
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..+++.+++|+++ +-+.||+++|.|.||. +.||.|+.+-++.+||++|.|+.+|.+|
T Consensus 74 ~~~~l~T~~GS~P--~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp 151 (420)
T KOG2275|consen 74 KYVLLYTWLGSDP--ELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKP 151 (420)
T ss_pred eeEEEEEeeCCCC--CccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCc
Confidence 7899999999875 4567999999999873 3699999999999999999999999999
Q ss_pred CCCEEEEEeCcccCC-ccchHHHHHhcCcccceeEEEEeccCC
Q 003998 94 PRPIIFLFNGAEELF-MLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 94 ~r~IiFlf~~aEE~g-l~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
+|+|...|-.+||.| -.|.+.|++ +...++....+-+|-.|
T Consensus 152 ~Rti~lsfvpDEEi~G~~Gm~~fa~-~~~~~~l~~~filDEG~ 193 (420)
T KOG2275|consen 152 KRTIHLSFVPDEEIGGHIGMKEFAK-TEEFKKLNLGFILDEGG 193 (420)
T ss_pred CceEEEEecCchhccCcchHHHHhh-hhhhcccceeEEecCCC
Confidence 999999999999986 899999998 32223333444455433
No 45
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=98.36 E-value=1.7e-06 Score=95.98 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=73.0
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
+..||++++.|++ .+.|++.+|+|+++. +.|+.|+.+|+|++|.++++|++. +.
T Consensus 45 ~~~nl~~~~~~~~----~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 118 (364)
T TIGR01892 45 EKSNLVAVIGPSG----AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QL 118 (364)
T ss_pred ccccEEEEecCCC----CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--Cc
Confidence 3579999996642 357999999999863 258999999999999999999875 35
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEec
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD 132 (780)
+++|.|+|..+||.|..|++.++++.+. +...++..|
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~e 155 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGAG--RPRHAIIGE 155 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcCC--CCCEEEECC
Confidence 7899999999999999999999986542 223444444
No 46
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=98.36 E-value=1.7e-06 Score=95.76 Aligned_cols=91 Identities=21% Similarity=0.129 Sum_probs=72.9
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 99 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiF 99 (780)
..+..|+++++.+. .+.|++++|+|+++. +.|+.|+.+|+|++|++++.| + .+++++|.|
T Consensus 45 ~~~~~n~i~~~~~~-----~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~ 116 (348)
T PRK04443 45 VDEAGNARGPAGDG-----PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSF 116 (348)
T ss_pred EcCCCcEEEEcCCC-----CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEE
Confidence 33457999998432 267999999999963 479999999999999999999 3 367889999
Q ss_pred EEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 100 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 100 lf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
++..+||.|..|...++.+. . +..++|+.|.
T Consensus 117 ~~~~dEE~g~~~~~~~l~~~-~--~~d~~iv~Ep 147 (348)
T PRK04443 117 VGAVEEEAPSSGGARLVADR-E--RPDAVIIGEP 147 (348)
T ss_pred EEEcccccCChhHHHHHHhc-c--CCCEEEEeCC
Confidence 99999999988888877753 2 4566777773
No 47
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.35 E-value=2.2e-06 Score=97.25 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=66.8
Q ss_pred ee-eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC----------------------------------------------
Q 003998 33 RN-HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------------------------------- 65 (780)
Q Consensus 33 ~~-~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------------------------------- 65 (780)
++ ..||+|+++|+.. .+.+.|++.||+||++.
T Consensus 54 d~~~gnv~~~~~~~~~-~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 54 DEKNGYVIATIPSNTD-KDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred cCCceEEEEEecCCCC-CCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 44 7899999998642 11378999999999862
Q ss_pred CCC----CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHh
Q 003998 66 SPG----AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA 118 (780)
Q Consensus 66 spG----A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~ 118 (780)
+.| +.|+.+|+|+||++++.|++.+..++.+|.|+|..+||.| .|++.+..+
T Consensus 133 ~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~~ 188 (410)
T TIGR01882 133 TDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDVK 188 (410)
T ss_pred cCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhhh
Confidence 112 3799999999999999998864346779999999999998 599888653
No 48
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=98.34 E-value=2.1e-06 Score=96.88 Aligned_cols=96 Identities=24% Similarity=0.279 Sum_probs=75.9
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
...|++++++|+++ ..+.|++++|+|++|. +.|+.|+.+|+|++|++++.|++.+.+
T Consensus 56 g~~~l~~~~~g~~~--~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~ 133 (400)
T TIGR01880 56 GKPVVVLTWPGSNP--ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFK 133 (400)
T ss_pred CceeEEEEEecCCC--CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCC
Confidence 35699999988642 2367999999999863 258899999999999999999988778
Q ss_pred CCCCEEEEEeCcccCCc-cchHHHHHhcCcccceeEEEEec
Q 003998 93 PPRPIIFLFNGAEELFM-LGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl-~GS~~fv~~h~~~~~i~a~INlD 132 (780)
++++|.|+|..+||.|- .|++.++++... +.+.+.+.+|
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~-~~~~~~~~~d 173 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKTDEF-KALNLGFALD 173 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHhhhc-cCCceEEEEc
Confidence 88999999999999975 699998875332 2334445454
No 49
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.34 E-value=1.4e-06 Score=100.57 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=72.3
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
....|+++++.+.+ +++.|++.+|+|++|. +.|+.||..|++++|.++++|++.+.++
T Consensus 63 ~~~~~~~~~~~~~~---~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~ 139 (466)
T TIGR01886 63 KNFDNYAGHVEYGA---GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPP 139 (466)
T ss_pred EEecCCceeEEecC---CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCC
Confidence 34557777765532 3468999999999864 4699999999999999999999988888
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcC
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHK 120 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~ 120 (780)
+++|+|++.++||.|..|++.++++++
T Consensus 140 ~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 140 SKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCEEEEEECccccCcccHHHHHhcCc
Confidence 999999999999999999999998764
No 50
>PRK07318 dipeptidase PepV; Reviewed
Probab=98.34 E-value=1.5e-06 Score=100.17 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=73.1
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+....|+++++++.+ +.+.|++.+|+|+||. +.|+.|+..|+|+++.+++.|++.+.+
T Consensus 63 ~~~~~n~~~~~~~~~---~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~ 139 (466)
T PRK07318 63 TKNVDNYAGHIEYGE---GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLP 139 (466)
T ss_pred EEEecCccceEEECC---CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCC
Confidence 445568888886422 2357999999999973 369999999999999999999988888
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhcC
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAHK 120 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h~ 120 (780)
++++|.|++..+||.|..|++.++++++
T Consensus 140 ~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 140 LSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCccEEEEEEcccccCchhHHHHHHhCC
Confidence 8899999999999999999999998764
No 51
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.33 E-value=2e-06 Score=95.16 Aligned_cols=91 Identities=25% Similarity=0.278 Sum_probs=73.2
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 100 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFl 100 (780)
..|+++++.+.. + +.|++.+|+|+++. +.|+.|+.+|+|++|.+++.|. +++++|.|+
T Consensus 49 ~~~~~~~~~~~~---~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~ 120 (352)
T PRK13007 49 GNSVVARTDLGR---P-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLV 120 (352)
T ss_pred CCeEEEEccCCC---C-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEE
Confidence 359999985431 2 35999999999884 3799999999999999999994 367899999
Q ss_pred EeCcccCCc--cchHHHHHhcCcccceeEEEEecc
Q 003998 101 FNGAEELFM--LGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 101 f~~aEE~gl--~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
|.++||.|. .|+..++.+++...+..++|+.|.
T Consensus 121 ~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 121 FYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred EEecccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 999999864 588888876654445678888884
No 52
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.30 E-value=2.8e-06 Score=94.81 Aligned_cols=94 Identities=22% Similarity=0.204 Sum_probs=72.7
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..|+++++ |. +.+.|++.+|+|+++.+ .|+.|+.+|++++|++++.+.+.+.+
T Consensus 46 ~~~n~~~~~-g~----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~ 120 (375)
T PRK13009 46 DVKNLWARR-GT----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPD 120 (375)
T ss_pred CCcEEEEEe-cC----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCC
Confidence 357999987 53 23679999999998742 48889999999999999999887777
Q ss_pred CCCCEEEEEeCcccCC-ccchHHHHHhcC-cccceeEEEEec
Q 003998 93 PPRPIIFLFNGAEELF-MLGAHGFMKAHK-WRDSVGAVINVE 132 (780)
Q Consensus 93 p~r~IiFlf~~aEE~g-l~GS~~fv~~h~-~~~~i~a~INlD 132 (780)
++++|+|++..+||.+ ..|++.+++... ...+..++|..|
T Consensus 121 ~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 162 (375)
T PRK13009 121 HKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGE 162 (375)
T ss_pred CCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEcC
Confidence 8899999999999985 469999886421 112344555544
No 53
>PRK06156 hypothetical protein; Provisional
Probab=98.28 E-value=3.8e-06 Score=98.21 Aligned_cols=94 Identities=21% Similarity=0.158 Sum_probs=76.5
Q ss_pred eeeeeEE--EEEeCCCCCCCCCeEEEeeeccCCCC-------------------------CCCCCCchhHHHHHHHHHHH
Q 003998 33 RNHTNIV--MRISSTDSQDTDPSVLMNGHFDGPLS-------------------------SPGAGDCGSCVASMLELARL 85 (780)
Q Consensus 33 ~~~~NVi--~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------------spGA~Dn~sGvA~mLElaR~ 85 (780)
....|++ ++++|++ .+.|++.+|+|+++. +.|+.|+..|+|+++.+++.
T Consensus 93 ~~~~~~v~~~~~~g~~----~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~ 168 (520)
T PRK06156 93 RNVDNRVLEIGLGGSG----SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKA 168 (520)
T ss_pred EecCCeEEEEEecCCC----CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHH
Confidence 3445655 6777642 357999999999873 24899999999999999999
Q ss_pred HHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 86 TIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 86 L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
|.+.+.+++++|.|+|..+||.|..|++.+++++. .....+|+|+
T Consensus 169 l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 169 IKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 99887788899999999999999999999998653 3456688885
No 54
>PRK07205 hypothetical protein; Provisional
Probab=98.28 E-value=3.1e-06 Score=97.02 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=67.9
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
.|+++++ |. +++.|++++|+|++|. +.|+.|+..|+|++|++++.|.+.+.+++
T Consensus 65 ~~~~~~~-g~----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~ 139 (444)
T PRK07205 65 YYGYAEI-GQ----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFN 139 (444)
T ss_pred eEEEEEe-cC----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCC
Confidence 3556655 43 2357999999999874 25999999999999999999999888889
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcC
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHK 120 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~ 120 (780)
++|+|+|.++||.|..|++.|+++.+
T Consensus 140 ~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 140 KRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred CcEEEEEECCcccCcccHHHHHhCCC
Confidence 99999999999999999999997544
No 55
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.27 E-value=3.3e-06 Score=94.57 Aligned_cols=95 Identities=22% Similarity=0.148 Sum_probs=73.7
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------------------CCCCCCchhHHHHHHHHHH
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------------------SPGAGDCGSCVASMLELAR 84 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------------------spGA~Dn~sGvA~mLElaR 84 (780)
.||++++.+. +.+.|++++|+|+++. +.|+.|+.+|+|+||++++
T Consensus 41 ~nvva~~~~~----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~ 116 (373)
T TIGR01900 41 DNVLARTDFG----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAA 116 (373)
T ss_pred CEEEEecCCC----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHH
Confidence 3999998542 2356999999999852 2589999999999999999
Q ss_pred HHHh--cCCCCCCCEEEEEeCcccCCc--cchHHHHHhcCcccceeEEEEeccC
Q 003998 85 LTID--SGWIPPRPIIFLFNGAEELFM--LGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 85 ~L~~--~~~~p~r~IiFlf~~aEE~gl--~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
.|.+ .+..++.+|.|+|.++||.|. .|+..++++++...+..++|..|..
T Consensus 117 ~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept 170 (373)
T TIGR01900 117 TLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPT 170 (373)
T ss_pred HHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCC
Confidence 9954 345678899999999999863 6999999876432345677777643
No 56
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=98.26 E-value=7e-06 Score=95.09 Aligned_cols=96 Identities=25% Similarity=0.310 Sum_probs=73.5
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC------------------------CCC---CCchhHHHHHHHHHH
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS------------------------PGA---GDCGSCVASMLELAR 84 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s------------------------pGA---~Dn~sGvA~mLElaR 84 (780)
.+...|++++.+++...+..+.|++.+|+|+|+.. .|+ .|+++|+|++|+++
T Consensus 49 ~d~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l- 127 (485)
T PRK15026 49 RDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL- 127 (485)
T ss_pred EEecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH-
Confidence 34557999998764221245779999999998631 577 49999999998876
Q ss_pred HHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 85 LTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 85 ~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
.+.+. ++.+|.++|+.+||.|+.||+.+.. . ..+.+++||+|..
T Consensus 128 --~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~-~~~~~~~i~~e~~ 171 (485)
T PRK15026 128 --ADENV-VHGPLEVLLTMTEEAGMDGAFGLQS--N-WLQADILINTDSE 171 (485)
T ss_pred --HhCCC-CCCCEEEEEEcccccCcHhHHHhhh--c-cCCcCEEEEeCCC
Confidence 33333 4679999999999999999999965 2 2467899999975
No 57
>PRK07522 acetylornithine deacetylase; Provisional
Probab=98.23 E-value=5e-06 Score=93.05 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=72.7
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
..||+++++|+ +.+.|++.+|+|+++. +.|+.|+..|+|++|++++.|.+. +++
T Consensus 52 ~~nv~a~~~~~----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~ 125 (385)
T PRK07522 52 KANLFATIGPA----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLR 125 (385)
T ss_pred cccEEEEeCCC----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCC
Confidence 47999998653 2357999999999863 358999999999999999999876 467
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcCc-ccceeEEEEec
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVE 132 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~~-~~~i~a~INlD 132 (780)
++|.|+|..+||.|..|++.++++.+. ..+...+|..|
T Consensus 126 ~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~e 164 (385)
T PRK07522 126 RPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGE 164 (385)
T ss_pred CCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEEEEcc
Confidence 899999999999998999999975421 12234555544
No 58
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.19 E-value=6.2e-06 Score=92.69 Aligned_cols=91 Identities=25% Similarity=0.271 Sum_probs=71.7
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC--------------------CCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS--------------------PGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s--------------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
..|++++. |. +++.|++.+|+|+++.. .|+.|+..|+|++|++++.+++.+ +
T Consensus 63 ~~~~~~~~-~~----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~ 134 (394)
T PRK08651 63 RPNLIARR-GS----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---D 134 (394)
T ss_pred cceEEEEe-CC----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---C
Confidence 56788865 32 12689999999998642 578999999999999999998764 7
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
++|.|+|..+||.|..|++.++++... +....|..|..+
T Consensus 135 ~~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 135 GNIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CCEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 899999999999998999999986543 244566666443
No 59
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.17 E-value=4.5e-05 Score=84.17 Aligned_cols=150 Identities=23% Similarity=0.211 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCCcc--------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLD-------- 140 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~-------- 140 (780)
|-||-.|||+|||++|.| + +..++.++.|+|+.-||.|+.||+....+- +-...|.+|+.+.+...
T Consensus 178 alDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i----~pd~aiavd~~~~~d~~~~~~~~~~ 251 (355)
T COG1363 178 ALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFRI----KPDIAIAVDVTPAGDTPGVPKGDVK 251 (355)
T ss_pred eccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhcccccc----CCCEEEEEecccccCCCCCcccccc
Confidence 789999999999999999 4 568999999999999999999999877632 34566777877655431
Q ss_pred ------eEE-ec-CCC-CchhhHh---hhhccCccccccccccCCCCC-CCCchHHHhhcCCCCcEEEEEEecCCCCCCC
Q 003998 141 ------LVC-QS-GPS-SWPSSVY---AQSAIYPMAHSAAQDVFPVIP-GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHT 207 (780)
Q Consensus 141 ------~lf-~~-gp~-~~l~~~y---~~~~~~P~~~~~~~~~f~~ip-s~TD~~~F~~~~~GIPgld~a~~~~~~~YHT 207 (780)
+.. .. ++. +.+.+.. ++....|+.- + ..| .+||-..+...-.|+|...++.. .. +-|+
T Consensus 252 lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q~----~---v~~~ggTDA~a~~~~g~gvpta~Igip-~r-y~Hs 322 (355)
T COG1363 252 LGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQV----D---VSPGGGTDAGAAHLTGGGVPTALIGIP-TR-YIHS 322 (355)
T ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeEE----E---ecCCCCccHHHHHHcCCCCceEEEecc-cc-cccC
Confidence 211 11 121 2222221 1222223211 1 223 67898887653467999887742 22 3477
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 208 SHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 208 ~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
++. .++.+.+.++.+.+.+++.++..
T Consensus 323 ~~e---~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 323 PVE---VAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred cce---eecHHHHHHHHHHHHHHHHhcch
Confidence 654 45678888888887777776643
No 60
>PRK05111 acetylornithine deacetylase; Provisional
Probab=98.17 E-value=7.2e-06 Score=91.79 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=66.5
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
..|+++++ |.+ + +.|++.+|+|+++. +.|+.|+.+++|++|++++.|++. .++
T Consensus 60 ~~nvia~~-g~~---~-~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~ 132 (383)
T PRK05111 60 KFNLLASL-GSG---E-GGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLK 132 (383)
T ss_pred CceEEEEe-CCC---C-CeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCC
Confidence 46999999 542 1 35999999999862 368999999999999999999864 356
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcC
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHK 120 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~ 120 (780)
++|+|+|.++||.|..|++.++++..
T Consensus 133 ~~i~~~~~~~EE~g~~G~~~~~~~~~ 158 (383)
T PRK05111 133 KPLYILATADEETSMAGARAFAEATA 158 (383)
T ss_pred CCeEEEEEeccccCcccHHHHHhcCC
Confidence 88999999999999999999998643
No 61
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.16 E-value=7.4e-06 Score=92.72 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=83.2
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..|+++++.+... ++.|++++|+|++|.+ .|+.|+..++++++.+++.+.+.+..
T Consensus 61 ~~~n~~~~~~~~~~---~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~ 137 (409)
T COG0624 61 GRPNLVARLGGGDG---GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGE 137 (409)
T ss_pred CceEEEEEecCCCC---CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCC
Confidence 35699999999742 3789999999999853 48999999999999999999997778
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhcC--cccceeEEEEecc
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAHK--WRDSVGAVINVEA 133 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h~--~~~~i~a~INlD~ 133 (780)
++++|.+++.+.||.|-.|...|..++. ...+..+.|..|.
T Consensus 138 ~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 138 LPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred CCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 8899999999999999999999998764 2346677787775
No 62
>PRK08554 peptidase; Reviewed
Probab=98.16 E-value=9.8e-06 Score=92.82 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=74.3
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
..|+++++ |. +++.|++.+|+|+++. ++|+.|+.+|+|++|.+++.|++. .++
T Consensus 52 ~~~l~~~~-~~----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~ 124 (438)
T PRK08554 52 YYAVYGEI-GE----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLN 124 (438)
T ss_pred ceEEEEEe-CC----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCC
Confidence 46899887 32 2357999999999863 369999999999999999999874 367
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcC-cccceeEEEEeccCC
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHK-WRDSVGAVINVEASG 135 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~-~~~~i~a~INlD~~G 135 (780)
++|+|+++++||.|..++..++++.. ......+.|+.|..+
T Consensus 125 ~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 125 GKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred CCEEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 88999999999999887777666432 224567889999754
No 63
>PRK13004 peptidase; Reviewed
Probab=98.16 E-value=1.1e-05 Score=91.05 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=72.6
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
...|+++++.|. + +.|++.+|+|+++. +.|+.||.+|++++|.+++.|++.+.+
T Consensus 57 ~~~n~~a~~~~~----~-~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~ 131 (399)
T PRK13004 57 PMGNVLGYIGHG----K-KLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLD 131 (399)
T ss_pred CCCeEEEEECCC----C-cEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCC
Confidence 346999998663 2 57999999999974 248889999999999999999988877
Q ss_pred CCCCEEEEEeCcccC-CccchHHHHHhcCcccceeEEEEecc
Q 003998 93 PPRPIIFLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 93 p~r~IiFlf~~aEE~-gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
++++|.|+|..+||. +-.|++.++++... +...+|..|.
T Consensus 132 ~~~~i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~ 171 (399)
T PRK13004 132 DEYTLYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEP 171 (399)
T ss_pred CCCeEEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccC
Confidence 889999999999996 45678888775322 2345555553
No 64
>PRK08652 acetylornithine deacetylase; Provisional
Probab=98.12 E-value=7.6e-06 Score=90.12 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=64.0
Q ss_pred CeEEEeeeccCCCC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhc
Q 003998 52 PSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAH 119 (780)
Q Consensus 52 ~~Vll~aH~DS~~~------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h 119 (780)
+.|++.+|+|+++. +.|+.|+.+|+|+||++++.|.+. .++++|.|+|..+||.|..|++.+++++
T Consensus 56 ~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g~~G~~~~~~~~ 133 (347)
T PRK08652 56 AELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEGGRGSALFAERY 133 (347)
T ss_pred CEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccCChhHHHHHHhc
Confidence 57999999999974 479999999999999999999864 3467999999999999989999999864
Q ss_pred CcccceeEEEEecc
Q 003998 120 KWRDSVGAVINVEA 133 (780)
Q Consensus 120 ~~~~~i~a~INlD~ 133 (780)
+- ...|..|.
T Consensus 134 ~~----d~~i~~ep 143 (347)
T PRK08652 134 RP----KMAIVLEP 143 (347)
T ss_pred CC----CEEEEecC
Confidence 31 45666664
No 65
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.12 E-value=1.4e-05 Score=89.11 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=71.8
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC-----------------CCCCCchhHHHHHHHHHHHHHhcCCCCCCCE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-----------------PGAGDCGSCVASMLELARLTIDSGWIPPRPI 97 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s-----------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~I 97 (780)
..|++++++|.+ +.+.|++++|+|+++.. .|+ .+++|+++.+++.|++.+.+++++|
T Consensus 43 ~~~vva~~~~~~---~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i 116 (363)
T TIGR01891 43 ATGVVATIGGGK---PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTV 116 (363)
T ss_pred CcEEEEEEeCCC---CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceE
Confidence 479999998753 23679999999999731 122 2678999999999988766778899
Q ss_pred EEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 98 IFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 98 iFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
.|+|..+||.+ .|++.+++++ +.+++.+.|+.|..
T Consensus 117 ~~~~~~dEE~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 117 RLIFQPAEEGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred EEEEeecCcCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 99999999996 7999998764 33456778887754
No 66
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=98.09 E-value=9.9e-06 Score=89.67 Aligned_cols=75 Identities=24% Similarity=0.227 Sum_probs=62.7
Q ss_pred eEEEeeeccCCCC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcC
Q 003998 53 SVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 120 (780)
Q Consensus 53 ~Vll~aH~DS~~~------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~ 120 (780)
.|++++|+|+++. ++|+.|+..|+|++|++++.|.+.+ .++.|+++.+||.|..|++.+++++.
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~ 137 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF 137 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC
Confidence 4999999999974 3899999999999999999998764 35899999999999999999998642
Q ss_pred cccceeEEEEeccC
Q 003998 121 WRDSVGAVINVEAS 134 (780)
Q Consensus 121 ~~~~i~a~INlD~~ 134 (780)
+..++|..|..
T Consensus 138 ---~~d~~i~~ep~ 148 (346)
T PRK00466 138 ---NFKHIIVGEPS 148 (346)
T ss_pred ---CCCEEEEcCCC
Confidence 34566666644
No 67
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.09 E-value=1.3e-05 Score=92.03 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=70.3
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+....|++++.+..+ ..+.|++++|+|+++. +.|+.|+..|+++++++++.|++.+.+
T Consensus 51 ~~~~~~~~~~~~~~~---~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~ 127 (447)
T TIGR01887 51 TENVDNYAGYAEYGQ---GEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLK 127 (447)
T ss_pred EEEecCceEEEEeCC---CCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCC
Confidence 445667766654321 2357999999999863 369999999999999999999988878
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhc
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAH 119 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h 119 (780)
++++|.|++..+||.|..|+..+++++
T Consensus 128 ~~~~i~~~~~~dEE~g~~g~~~~l~~~ 154 (447)
T TIGR01887 128 LKKKIRFIFGTDEETGWACIDYYFEHE 154 (447)
T ss_pred CCCcEEEEEECCcccCcHhHHHHHHhc
Confidence 899999999999999999999999753
No 68
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.08 E-value=1.6e-05 Score=87.48 Aligned_cols=88 Identities=23% Similarity=0.153 Sum_probs=69.9
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFN 102 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~ 102 (780)
..|+++.. |. +.+.|++++|+|+++. +.|+.|+.+|+|+||++++.|++. ..+|+|++.
T Consensus 39 ~~~~~~~~-~~----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~ 109 (336)
T TIGR01902 39 AGNFILGK-GD----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGL 109 (336)
T ss_pred CCcEEEEe-CC----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEE
Confidence 45888865 32 2367999999999862 469999999999999999999764 358999999
Q ss_pred CcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 103 GAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 103 ~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
.+||.|..|++.++++++- .++|..|..+
T Consensus 110 ~dEE~g~~G~~~~~~~~~~----~~~ii~ept~ 138 (336)
T TIGR01902 110 VDEESSSKGAREVIDKNYP----FYVIVGEPSG 138 (336)
T ss_pred eCcccCCccHHHHHhhcCC----CEEEEecCCC
Confidence 9999999999999987531 2566667543
No 69
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.00 E-value=2.5e-05 Score=87.14 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=70.9
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..|++++. |. +.+.|++.+|+|+++.. .|+.|+..|++++++.++.+.+.+.++
T Consensus 44 ~~~~~~~~-g~----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~ 118 (370)
T TIGR01246 44 TKNLWATR-GT----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDH 118 (370)
T ss_pred CceEEEEe-cC----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCC
Confidence 46899985 32 23679999999998742 478899999999999999998877677
Q ss_pred CCCEEEEEeCcccCCc-cchHHHHHhcCc-ccceeEEEEec
Q 003998 94 PRPIIFLFNGAEELFM-LGAHGFMKAHKW-RDSVGAVINVE 132 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl-~GS~~fv~~h~~-~~~i~a~INlD 132 (780)
+++|+|+|..+||.+- .|++.+++.... ..+...+|..|
T Consensus 119 ~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 159 (370)
T TIGR01246 119 KGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGE 159 (370)
T ss_pred CCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcC
Confidence 8899999999999864 699998863211 12345555444
No 70
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=6.7e-05 Score=84.14 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=120.7
Q ss_pred eeeeeEEEEEeCCCC---CCC-CCeEEEeeeccCC----CCCCCCCCchhHHHHHHHHHHHHHhcC--CCCCCCEEEEEe
Q 003998 33 RNHTNIVMRISSTDS---QDT-DPSVLMNGHFDGP----LSSPGAGDCGSCVASMLELARLTIDSG--WIPPRPIIFLFN 102 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~---~~~-~~~Vll~aH~DS~----~~spGA~Dn~sGvA~mLElaR~L~~~~--~~p~r~IiFlf~ 102 (780)
-+.+||..-+++..- .++ +++++..+-.|+- ..++||.-.-++....|..||+|++.. ...+|++.|+|+
T Consensus 155 l~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f 234 (596)
T KOG2657|consen 155 LHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFF 234 (596)
T ss_pred cCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEe
Confidence 466788888765431 122 6899999999994 467899989999999999999998753 467899999999
Q ss_pred CcccCCccchHHHHHhcCcc------cc---eeEEEEeccCCCC-CcceEEecCCC--Cc-------hhhHhhhh-ccCc
Q 003998 103 GAEELFMLGAHGFMKAHKWR------DS---VGAVINVEASGTG-GLDLVCQSGPS--SW-------PSSVYAQS-AIYP 162 (780)
Q Consensus 103 ~aEE~gl~GS~~fv~~h~~~------~~---i~a~INlD~~G~g-g~~~lf~~gp~--~~-------l~~~y~~~-~~~P 162 (780)
.||-.+.+||.+++-|.... ++ +..++.+-.+|.+ ++.+..-.++. .. ..+.++|. +.++
T Consensus 235 ~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~ 314 (596)
T KOG2657|consen 235 NGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHA 314 (596)
T ss_pred ecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccC
Confidence 99999999999888654222 22 6666666666543 22222222221 11 11222222 1233
Q ss_pred cccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecC---CCCCCCcCCCcCCCCHHH
Q 003998 163 MAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIG---GYYYHTSHDTVDRLLPGS 219 (780)
Q Consensus 163 ~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~~~ 219 (780)
+.--...+.-..+|. |....|.|+-.++.++-++-.+. ..+||+.+|+.|++|-..
T Consensus 315 f~ll~~s~~s~~lPP-sSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy 373 (596)
T KOG2657|consen 315 FDLLKPSGSSDRLPP-SSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSY 373 (596)
T ss_pred eeeecCCCCCCCCCh-HHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchh
Confidence 311111111123444 34667776337899998886664 348999999999997653
No 71
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=97.82 E-value=8.1e-05 Score=83.95 Aligned_cols=91 Identities=21% Similarity=0.147 Sum_probs=69.2
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..|+++++ |.+ .+.|++.+|+|+++. +.|+.|+..|+|++|.+++.|++.+.++
T Consensus 56 ~~~v~~~~-g~~----~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~ 130 (395)
T TIGR03526 56 MGNVLGYI-GHG----PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLD 130 (395)
T ss_pred CCcEEEEe-CCC----CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCC
Confidence 46899988 432 257999999999873 3799999999999999999999887667
Q ss_pred CCCEEEEEeCcccC-CccchHHHHHhcCcccceeEEEEec
Q 003998 94 PRPIIFLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 94 ~r~IiFlf~~aEE~-gl~GS~~fv~~h~~~~~i~a~INlD 132 (780)
+.++.|++..+||. +-.|++.++++... +..++|..|
T Consensus 131 ~~~v~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~i~~e 168 (395)
T TIGR03526 131 DYTLLVTGTVQEEDCDGLCWQYIIEEDKI--KPEFVVITE 168 (395)
T ss_pred CceEEEEEecccccCCcHhHHHHHhccCC--CCCEEEecC
Confidence 78999999999993 44567777764332 234445445
No 72
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=97.79 E-value=8.4e-05 Score=83.79 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=68.0
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..|+++++ |.+ .+.|++.+|+|+++. +.|+.|+..|+|++|.+++.|++.+.++
T Consensus 56 ~~n~~~~~-g~~----~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~ 130 (395)
T TIGR03320 56 MGNVLGYI-GHG----PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLD 130 (395)
T ss_pred CCCEEEEe-CCC----CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCC
Confidence 46899988 432 257999999999863 3799999999999999999999887677
Q ss_pred CCCEEEEEeCcccCC-ccchHHHHHhcCcccceeEEEEec
Q 003998 94 PRPIIFLFNGAEELF-MLGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 94 ~r~IiFlf~~aEE~g-l~GS~~fv~~h~~~~~i~a~INlD 132 (780)
+.+|+|++..+||.+ -.|++.++++... +..++|..|
T Consensus 131 ~~~i~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~iv~e 168 (395)
T TIGR03320 131 DYTLLVTGTVQEEDCDGLCWQYIIEEDGI--KPEFVVITE 168 (395)
T ss_pred CceEEEEecccccccCchHHHHHHHhcCC--CCCEEEEcC
Confidence 889999999999974 2344555654322 234455555
No 73
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.77 E-value=9.1e-05 Score=80.35 Aligned_cols=131 Identities=23% Similarity=0.204 Sum_probs=80.5
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC------CCC-----
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS------GTG----- 137 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~------G~g----- 137 (780)
|-||-+||++++|++|.+++. +.+.++.|+|...||.|+.|++....+- +....|.+|.. +..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 679999999999999999975 4559999999999999999999887642 22345555543 222
Q ss_pred ---CcceEE-ecCCC--CchhhHhh---hhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCc
Q 003998 138 ---GLDLVC-QSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTS 208 (780)
Q Consensus 138 ---g~~~lf-~~gp~--~~l~~~y~---~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~ 208 (780)
|+.+.. ..++. +.+.+... +...-|+... . ....+||-..+...-.|+|+..++.- -.+.||+
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~----~--~~~ggTDa~~~~~~~~Gi~t~~i~iP--~ry~Hs~ 277 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQRE----V--FSGGGTDAGAIQLSGGGIPTAVISIP--CRYMHSP 277 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EEEE----E--ESSSSSTHHHHHTSTTSSEEEEEEEE--EBSTTST
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeEEE----e--cCCcccHHHHHHHcCCCCCEEEEecc--cccCCCc
Confidence 222222 22211 22222221 2222343221 1 12367888888643369999988742 2367998
Q ss_pred CCCcC
Q 003998 209 HDTVD 213 (780)
Q Consensus 209 ~Dt~d 213 (780)
..+.+
T Consensus 278 ~e~~~ 282 (292)
T PF05343_consen 278 VEVID 282 (292)
T ss_dssp TEEEE
T ss_pred ceEEE
Confidence 87665
No 74
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.69 E-value=0.00039 Score=77.26 Aligned_cols=146 Identities=23% Similarity=0.176 Sum_probs=93.5
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCC-----------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG----------- 137 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~g----------- 137 (780)
|-||-.||++++|++|.+++. +++.++.|+|+.-||.|+.||+.-..+-+ ....|.+|..-.+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i~----pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKFN----PDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhCC----CCEEEEEecCCcCCCCCCCccccC
Confidence 889999999999999999865 57889999999999999999997554322 2366777764322
Q ss_pred -CcceEE-ecCCC--CchhhHh---hhhccCccccccccccCCCCCCCCchH--HHhhcCCCCcEEEEEEecCCCCCCCc
Q 003998 138 -GLDLVC-QSGPS--SWPSSVY---AQSAIYPMAHSAAQDVFPVIPGDTDYR--IFSQDYGDIPGLDIIFLIGGYYYHTS 208 (780)
Q Consensus 138 -g~~~lf-~~gp~--~~l~~~y---~~~~~~P~~~~~~~~~f~~ips~TD~~--~F~~~~~GIPgld~a~~~~~~~YHT~ 208 (780)
|+.+.. ..++. +.+.+.. ++...-|+.. . ....+||-. .+.+ .|+|.+.++. .. .+-||+
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-----~--~~~gGtDa~~~~~~~--~Gvpt~~i~i-p~-Ry~Hs~ 318 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-----Y--VAKGGTDAGAAHLKN--SGVPSTTIGV-CA-RYIHSH 318 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-----e--cCCCCchHHHHHHhC--CCCcEEEEcc-Cc-ccccCh
Confidence 333322 22222 2233222 2222223311 1 112357766 5543 6999998773 21 245887
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHH
Q 003998 209 HDTVDRLLPGSVQARGDNLFNVLKAF 234 (780)
Q Consensus 209 ~Dt~d~id~~~lq~~g~~~l~l~~~l 234 (780)
... ++.+.++++.+.+.++++.+
T Consensus 319 ~e~---i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 319 QTL---YSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred hhe---eeHHHHHHHHHHHHHHHHhc
Confidence 655 56778888888888887765
No 75
>PLN02693 IAA-amino acid hydrolase
Probab=97.67 E-value=0.00014 Score=83.46 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=65.0
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC-----------CC---CCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-----------PG---AGDCGSCVASMLELARLTIDSGWIPPRPIIF 99 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s-----------pG---A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiF 99 (780)
..+||++++.+ + +.+.|++.+|+|++|.. +| |.|..+++|+++.+++.|++.+.+.+.+|+|
T Consensus 89 ~~~~via~~g~-~---~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~ 164 (437)
T PLN02693 89 AITGIIGYIGT-G---EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVL 164 (437)
T ss_pred CCcEEEEEECC-C---CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEE
Confidence 35899999842 2 23689999999999742 12 5677779999999999999876566789999
Q ss_pred EEeCcccCCccchHHHHHhc
Q 003998 100 LFNGAEELFMLGAHGFMKAH 119 (780)
Q Consensus 100 lf~~aEE~gl~GS~~fv~~h 119 (780)
+|..+|| +..|++.++++.
T Consensus 165 if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 165 IFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred EEEEccc-chhhHHHHHHCC
Confidence 9999999 557999998764
No 76
>PRK08737 acetylornithine deacetylase; Provisional
Probab=97.62 E-value=0.00019 Score=80.34 Aligned_cols=81 Identities=25% Similarity=0.258 Sum_probs=63.0
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 95 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r 95 (780)
..|++++ +|+ +.|++++|+|+++. +.||.|+.+|+|+||.+++. ++.
T Consensus 54 ~~nli~~-~g~------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~ 119 (364)
T PRK08737 54 AVSLYAV-RGT------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDG 119 (364)
T ss_pred ceEEEEE-cCC------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCC
Confidence 4589886 342 35999999999873 24999999999999999873 356
Q ss_pred CEEEEEeCcccCCc-cchHHHHHhcCcccceeEEEEec
Q 003998 96 PIIFLFNGAEELFM-LGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 96 ~IiFlf~~aEE~gl-~GS~~fv~~h~~~~~i~a~INlD 132 (780)
+|.|++..+||.|. .|++.++++.. +..++|..|
T Consensus 120 ~v~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~E 154 (364)
T PRK08737 120 DAAFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAE 154 (364)
T ss_pred CEEEEEEcccccCchhhHHHHHHhCC---CCCEEEEcC
Confidence 89999999999987 69899988642 334555555
No 77
>PLN02280 IAA-amino acid hydrolase
Probab=97.60 E-value=0.00033 Score=81.21 Aligned_cols=79 Identities=24% Similarity=0.265 Sum_probs=63.1
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------CCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------PGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 99 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiF 99 (780)
..|+++++ |++ +++.|++.+|+|++|.. .|.+-|+ ++|++|.++++|++.+.+++.+|+|
T Consensus 140 ~~~vva~~-g~~---~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~g~V~~ 214 (478)
T PLN02280 140 KTGIRAWI-GTG---GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSREHLLKGTVVL 214 (478)
T ss_pred CCEEEEEE-CCC---CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhccccCCceEEE
Confidence 56999998 543 23689999999999842 1233344 9999999999998776677889999
Q ss_pred EEeCcccCCccchHHHHHhc
Q 003998 100 LFNGAEELFMLGAHGFMKAH 119 (780)
Q Consensus 100 lf~~aEE~gl~GS~~fv~~h 119 (780)
+|..+||.|. |++..+++-
T Consensus 215 if~pdEE~g~-Ga~~li~~g 233 (478)
T PLN02280 215 LFQPAEEAGN-GAKRMIGDG 233 (478)
T ss_pred Eecccccccc-hHHHHHHCC
Confidence 9999999974 999999853
No 78
>PRK09961 exoaminopeptidase; Provisional
Probab=97.29 E-value=0.0019 Score=71.82 Aligned_cols=150 Identities=15% Similarity=0.037 Sum_probs=92.9
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCC----------
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG---------- 137 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~g---------- 137 (780)
.|-||-+||++++|++|.+++. +++.++.|+|+..||.|+.||+.-...- . ....|.+|.+-.+
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~i--~--pd~~I~vDv~~~~d~~~~~~~~~ 236 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRAV--S--PDVAIVLDTACWAKNFDYGAANH 236 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhcc--C--CCEEEEEeccCCCCCCCCCCCcc
Confidence 3899999999999999999865 4789999999999999999999877532 2 2446777765332
Q ss_pred -----CcceEEe-cCCC--CchhhHhhh---hccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCC
Q 003998 138 -----GLDLVCQ-SGPS--SWPSSVYAQ---SAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 206 (780)
Q Consensus 138 -----g~~~lf~-~gp~--~~l~~~y~~---~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YH 206 (780)
|+.+... .++. +.+.+...+ ....|+.. +. ....+||-..|.....|+|.+.++.- .. +=|
T Consensus 237 ~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~--~~ggGTDa~~~~~~~~Giptv~ig~p-~r-y~H 308 (344)
T PRK09961 237 RQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQA----DM--FSNGGTDGGAVHLTGTGVPTVVMGPA-TR-HGH 308 (344)
T ss_pred cccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEE----Ee--cCCCcchHHHHHHhCCCCCEEEechh-hh-ccc
Confidence 2222111 1111 122222211 11122211 01 12246898877532268999988742 22 348
Q ss_pred CcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 003998 207 TSHDTVDRLLPGSVQARGDNLFNVLKAF 234 (780)
Q Consensus 207 T~~Dt~d~id~~~lq~~g~~~l~l~~~l 234 (780)
|+.. .++.+.+.++.+.+.+++..+
T Consensus 309 s~~E---~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 309 CAAS---IADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred Chhh---eEEHHHHHHHHHHHHHHHHHc
Confidence 8765 455777777777777776554
No 79
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0013 Score=72.98 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=80.3
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC------------------------------------------CCCCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS------------------------------------------SPGAGD 71 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~------------------------------------------spGA~D 71 (780)
...||.|-++|.+ +++.|++.+|+|+|.. +.|+.|
T Consensus 64 gR~nv~AlVrg~~---~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 64 GRRNVFALVRGGT---SKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred ccceeEEEEecCC---CCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 5689999999953 5689999999999742 369999
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcC-----cccceeEEEEeccCCC
Q 003998 72 CGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK-----WRDSVGAVINVEASGT 136 (780)
Q Consensus 72 n~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~-----~~~~i~a~INlD~~G~ 136 (780)
..||.|+-|.++..+++. ...+.+|.|+.+..||..-.|.++-+...+ ..-...+.||+|.++.
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 999999999999999876 466789999999999987777776654331 2346789999998753
No 80
>PRK09864 putative peptidase; Provisional
Probab=97.24 E-value=0.0039 Score=69.44 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCC------------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT------------ 136 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~------------ 136 (780)
|-||-.||++++|++|.+++ ++.++.|+|+.-||.|+.||+.-..+.+ .+ ..|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~--PD--iaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK--PD--VVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC--CC--EEEEEecccCCCCCCCcccccc
Confidence 78999999999999999964 7799999999999999999998766432 23 3666775432
Q ss_pred ----CCcce-EEecCCC--CchhhHh---hhhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCC
Q 003998 137 ----GGLDL-VCQSGPS--SWPSSVY---AQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 206 (780)
Q Consensus 137 ----gg~~~-lf~~gp~--~~l~~~y---~~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YH 206 (780)
+|+.+ .+..++. +.+.+.. ++...-|+-- +.. ..++||-..+.....|+|...++. ..+ +-|
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~~--~~ggTDa~~i~~~~~Gvpt~~isi-P~R-Y~H 316 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQF----STM--KTGATDGGRYNVMGGGRPVVALCL-PTR-YLH 316 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceE----EEc--CCCCchHHHHHHhCCCCcEEEEee-ccC-cCC
Confidence 12222 1222221 2222222 1222223311 111 114677766543237999988774 222 458
Q ss_pred CcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 003998 207 TSHDTVDRLLPGSVQARGDNLFNVLKAF 234 (780)
Q Consensus 207 T~~Dt~d~id~~~lq~~g~~~l~l~~~l 234 (780)
|+... +|.+.++++.+.+.++++.+
T Consensus 317 s~~e~---~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 317 ANSGM---ISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CcceE---eEHHHHHHHHHHHHHHHHhc
Confidence 88765 45677777777777777665
No 81
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=97.06 E-value=0.004 Score=69.21 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=85.6
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCC--------CCcc
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT--------GGLD 140 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~--------gg~~ 140 (780)
|.||.+||+++++++|.|++.+.+++++|.|+|+..||.| .|+.. ....++...|.+|.... .|..
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~-----~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASH-----ALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchh-----cccHhhhccEEEEecccCCCCCcCCCCce
Confidence 5999999999999999999877778999999999999999 56321 12223334466664321 1222
Q ss_pred eE-EecCCC--CchhhHh---hhhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCC
Q 003998 141 LV-CQSGPS--SWPSSVY---AQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDR 214 (780)
Q Consensus 141 ~l-f~~gp~--~~l~~~y---~~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~ 214 (780)
+. ...++. +.+.+.. ++...-|+.. +++. ..+||-..+.....|+|...++. ..+ +-|| .+.
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q~----~~~~--~~gtDa~~~~~~~~Gi~t~~i~i-P~R-y~Hs----~e~ 322 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQDHGIPHRR----DVFR--YYRSDAASAVEAGHDIRTALVTF-GLD-ASHG----YER 322 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCcEE----EecC--CCCChHHHHHHcCCCCCEEEeec-ccc-chhh----hhh
Confidence 31 222221 2333322 2222234321 2221 13666666543236999987763 222 3477 556
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003998 215 LLPGSVQARGDNLFNVL 231 (780)
Q Consensus 215 id~~~lq~~g~~~l~l~ 231 (780)
++.+.++++.+.+.+++
T Consensus 323 ~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 323 THIDALEALANLLVAYA 339 (343)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 67777877777665554
No 82
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=95.91 E-value=0.015 Score=64.27 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=65.5
Q ss_pred CCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 003998 44 STDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFN 102 (780)
Q Consensus 44 G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~ 102 (780)
|+++ .++.+++..|+|-.|. +.|+.||..-|+.-.++.+++.+.|..++.+|+|||-
T Consensus 86 Gsdp--~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~E 163 (473)
T KOG2276|consen 86 GSDP--SKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFE 163 (473)
T ss_pred cCCC--CcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEE
Confidence 6654 4678999999998652 3699999999999999999999999999999999999
Q ss_pred CcccCCccchHHHHHhc
Q 003998 103 GAEELFMLGAHGFMKAH 119 (780)
Q Consensus 103 ~aEE~gl~GS~~fv~~h 119 (780)
+-||.|-.|-.+-+++.
T Consensus 164 gmEEsgS~~L~~l~~~~ 180 (473)
T KOG2276|consen 164 GMEESGSEGLDELIEKE 180 (473)
T ss_pred echhccCccHHHHHHHH
Confidence 99999999998888754
No 83
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=95.84 E-value=0.055 Score=63.18 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=76.1
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchH
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAH 113 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~ 113 (780)
+++||.|.++.... +..|.+++.+-+++.. | .-|..|+|.+|.++|++++..+ .-++|+|++.+.| ..|.+
T Consensus 2 ~G~nvy~i~rapR~-d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~-wsKDii~l~~~~~---~~g~~ 72 (504)
T PF04114_consen 2 SGTNVYGILRAPRG-DGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSY-WSKDIIFLFTDDE---LAGMQ 72 (504)
T ss_pred CceEEEEEEecCCC-CCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchh-hhccEEEEecCCc---chHHH
Confidence 47899999987653 4568899999988765 3 4458999999999999998643 3799999998865 46889
Q ss_pred HHHHhc--C---------c---ccceeEEEEeccCCCCCcc
Q 003998 114 GFMKAH--K---------W---RDSVGAVINVEASGTGGLD 140 (780)
Q Consensus 114 ~fv~~h--~---------~---~~~i~a~INlD~~G~gg~~ 140 (780)
+|++++ . + +..+++.||+|..+.....
T Consensus 73 awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~ 113 (504)
T PF04114_consen 73 AWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSS 113 (504)
T ss_pred HHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccE
Confidence 999864 1 1 2368999999988765443
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=89.64 E-value=1.9 Score=48.98 Aligned_cols=92 Identities=23% Similarity=0.319 Sum_probs=69.5
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC-----------CCC----CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------SPG----AGDCGSCVASMLELARLTIDSGWIPPRPIIFL 100 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-----------spG----A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFl 100 (780)
+=|++.++|.+ +.+.|.+-|-+|..|. .+| -+=| .-+|++|-+|++|++....++-+|+|+
T Consensus 57 TGvva~~~~g~---~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~i 132 (392)
T COG1473 57 TGVVATLKGGK---PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLI 132 (392)
T ss_pred eEEEEEEcCCC---CCCEEEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEE
Confidence 66899999864 3458999999999873 234 1122 336889999999998656789999999
Q ss_pred EeCcccCCccchHHHHHhcCcccc-eeEEEEecc
Q 003998 101 FNGAEELFMLGAHGFMKAHKWRDS-VGAVINVEA 133 (780)
Q Consensus 101 f~~aEE~gl~GS~~fv~~h~~~~~-i~a~INlD~ 133 (780)
|-.|||.+- |++..+++-.. ++ +.+++-+--
T Consensus 133 fQPAEE~~~-Ga~~mi~~G~~-~~~vD~v~g~H~ 164 (392)
T COG1473 133 FQPAEEGGG-GAKAMIEDGVF-DDFVDAVFGLHP 164 (392)
T ss_pred ecccccccc-cHHHHHhcCCc-cccccEEEEecC
Confidence 999999988 99999986433 34 666665553
No 85
>PRK02813 putative aminopeptidase 2; Provisional
Probab=86.16 E-value=1.6 Score=50.12 Aligned_cols=142 Identities=13% Similarity=0.041 Sum_probs=82.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCcc---chHH-HHH----h-----------cCcccceeE
Q 003998 67 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML---GAHG-FMK----A-----------HKWRDSVGA 127 (780)
Q Consensus 67 pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~---GS~~-fv~----~-----------h~~~~~i~a 127 (780)
-++-||-+||.+++|+++.+.+ +.++++++++-||.|.. |++. |.+ + +...-+-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 4689999999999999987642 67999999999999998 8774 111 0 001123356
Q ss_pred EEEeccCCCC------------------CcceEEecCC----CCchhh---HhhhhccCccccccccccC-CCCCCCCch
Q 003998 128 VINVEASGTG------------------GLDLVCQSGP----SSWPSS---VYAQSAIYPMAHSAAQDVF-PVIPGDTDY 181 (780)
Q Consensus 128 ~INlD~~G~g------------------g~~~lf~~gp----~~~l~~---~y~~~~~~P~~~~~~~~~f-~~ips~TD~ 181 (780)
+|.+|.+-+. |..+...+.. ++.... ..++.+.-|+-.. +. ...|++||-
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~----v~~~d~~gGsti 380 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEF----VNRSDMPCGSTI 380 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEE----EecCCCCCccHH
Confidence 6777765332 1111111000 001111 1112222232111 11 245678999
Q ss_pred HHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHH
Q 003998 182 RIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGS 219 (780)
Q Consensus 182 ~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~ 219 (780)
.++.....|+|.+|++.- --.-||+..+...-|...
T Consensus 381 g~i~~s~~Gi~tvdiGiP--~l~MHS~~E~~~~~D~~~ 416 (428)
T PRK02813 381 GPITAARLGIRTVDVGAP--MLAMHSARELAGVKDHAY 416 (428)
T ss_pred HHHHHhCCCCcEEEeChh--hcccccHHHHccHHHHHH
Confidence 888643479999998731 224599988877666543
No 86
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.34 E-value=6.5 Score=46.03 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=60.1
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHH
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 114 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~ 114 (780)
+.||.|.+++... +..+.+++..-|+... |. |..|++.++.+++.+++.. =-.++|+|++.++ ...|-.+
T Consensus 120 G~NvyGilRAPRg-dgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~---~~~g~~A 189 (617)
T KOG3566|consen 120 GENVYGILRAPRG-DGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDG---PALGLDA 189 (617)
T ss_pred CceEEEEEecCCC-CCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCC---ccccHHH
Confidence 8999999998753 4557889888888665 33 4889999999999999753 2568999999988 5677889
Q ss_pred HHHhc
Q 003998 115 FMKAH 119 (780)
Q Consensus 115 fv~~h 119 (780)
|.+.+
T Consensus 190 wLeaY 194 (617)
T KOG3566|consen 190 WLEAY 194 (617)
T ss_pred HHHHh
Confidence 99864
No 87
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=79.71 E-value=7.8 Score=45.10 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=83.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcC-CCCCCCEEEEEeCcccCCccchHHHHHhc-Cc-ccc-------------------
Q 003998 67 PGAGDCGSCVASMLELARLTIDSG-WIPPRPIIFLFNGAEELFMLGAHGFMKAH-KW-RDS------------------- 124 (780)
Q Consensus 67 pGA~Dn~sGvA~mLElaR~L~~~~-~~p~r~IiFlf~~aEE~gl~GS~~fv~~h-~~-~~~------------------- 124 (780)
-++-||-.||.+++|+++.+.+.. ..+....++++++-||.|..|++.=.... +. .++
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 468999999999999998765320 12344556666999999998877643321 10 001
Q ss_pred --eeEEEEeccCCC------------------CCcceEEecCC----CCchhhHh---hhhccCccccccccccCCCCCC
Q 003998 125 --VGAVINVEASGT------------------GGLDLVCQSGP----SSWPSSVY---AQSAIYPMAHSAAQDVFPVIPG 177 (780)
Q Consensus 125 --i~a~INlD~~G~------------------gg~~~lf~~gp----~~~l~~~y---~~~~~~P~~~~~~~~~f~~ips 177 (780)
-..+|..|++-+ +|..+.+.+.. ++...... .+.+.-|+-..+.. ...|+
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~~~~---~d~~~ 403 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEFVVK---NDSPC 403 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEEEec---CCCCC
Confidence 116777887533 12222222110 01111111 12222333211100 24577
Q ss_pred CCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHH
Q 003998 178 DTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSV 220 (780)
Q Consensus 178 ~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~l 220 (780)
+||-.++.....|||.+|++-- --.-||+..+...-|...+
T Consensus 404 GsTig~i~~s~~Gi~tvDiGiP--~l~MHS~rE~~~~~D~~~~ 444 (465)
T PTZ00371 404 GSTIGPILSSNLGIRTVDIGIP--QLAMHSIREMCGVVDIYYL 444 (465)
T ss_pred cchHHHHHHhCCCCcEEEechh--hcccccHHHHccHHHHHHH
Confidence 8999888642479999998731 2246999988877665543
No 88
>PRK02256 putative aminopeptidase 1; Provisional
Probab=77.12 E-value=3.3 Score=48.02 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=38.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHH
Q 003998 67 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFM 116 (780)
Q Consensus 67 pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv 116 (780)
-++-||-.||.+++|+++.+. .++..+++++++-||.|..|++.=.
T Consensus 256 s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 578999999999999998764 3567999999999999987766543
No 89
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=75.83 E-value=4.4 Score=46.28 Aligned_cols=60 Identities=18% Similarity=0.046 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHHHHHhcC-CCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEec
Q 003998 70 GDCGSCVASMLELARLTIDSG-WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 70 ~Dn~sGvA~mLElaR~L~~~~-~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD 132 (780)
.||-+|.|.++++++++++.. .-+..+|++.|.++||.|+.|++.|.-.. -.+....++|
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~---f~a~~ay~iD 203 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVAR---FLADFAYTLD 203 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHHh---hhcceeEecC
Confidence 477799999999999998552 35677999999999999999999887532 2345566777
No 90
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=45.80 E-value=24 Score=39.44 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=25.2
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCC
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPL 64 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~ 64 (780)
...++..|+++.++|++ +.+.|++.||.|+++
T Consensus 40 v~~D~~Gnlia~~~g~~---~~~~v~l~aHmDevG 71 (343)
T TIGR03106 40 YELTRRGAIRATLPGRE---ATPARAVVTHLDTLG 71 (343)
T ss_pred EEECCCeEEEEEECCCC---CCCeEEEEEeecccc
Confidence 34578899999998852 234799999999987
No 91
>PRK09961 exoaminopeptidase; Provisional
Probab=42.78 E-value=24 Score=39.39 Aligned_cols=31 Identities=16% Similarity=0.452 Sum_probs=24.7
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCC
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPL 64 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~ 64 (780)
...++..|++++++|++ .+.|++.||.|+++
T Consensus 37 v~~D~~Gnvi~~~~g~~----~~~v~l~aHmDevg 67 (344)
T PRK09961 37 VRFDGLGSVLIRLNEST----GPKVMICAHMDEVG 67 (344)
T ss_pred EEECCCCCEEEEEcCCC----CCEEEEEeccceec
Confidence 34578899999998742 24799999999986
No 92
>COG3152 Predicted membrane protein [Function unknown]
Probab=39.78 E-value=2.5e+02 Score=26.87 Aligned_cols=23 Identities=4% Similarity=-0.214 Sum_probs=12.1
Q ss_pred hhccccCCcchhhhHHhhhhHHHHHH
Q 003998 442 SINFYGRRSLRSTLFYVVPLIPCITY 467 (780)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~p~~~ 467 (780)
.+|+|++....++ .+.+++|+++
T Consensus 72 vrRLHD~g~sgw~---~Ll~lip~vg 94 (125)
T COG3152 72 VRRLHDRGRSGWW---ALLALIPVVG 94 (125)
T ss_pred HHHHHhcCCchHH---HHHHHHHHHH
Confidence 3677776644333 2344555554
No 93
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=36.12 E-value=36 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=25.6
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCC
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPL 64 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~ 64 (780)
...++..||++.++|.+. ..+.|++.||.|.++
T Consensus 35 v~~D~~GNvia~~~g~~~--~~~~vml~AHmDeVG 67 (350)
T TIGR03107 35 VETDGLGGIFGIKESQVE--NAPRVMVAAHMDEVG 67 (350)
T ss_pred EEECCCCCEEEEecCCCC--CCCEEEEEecccEeC
Confidence 456888999999887411 234799999999986
No 94
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=33.93 E-value=3.7e+02 Score=24.59 Aligned_cols=9 Identities=0% Similarity=-0.249 Sum_probs=5.6
Q ss_pred hhccccCCc
Q 003998 442 SINFYGRRS 450 (780)
Q Consensus 442 ~~~~~~~~~ 450 (780)
.+|+|+...
T Consensus 67 vRRlhD~G~ 75 (120)
T PF05656_consen 67 VRRLHDIGR 75 (120)
T ss_pred hhhhhcCCC
Confidence 467777554
No 95
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=28.07 E-value=8.2e+02 Score=26.69 Aligned_cols=63 Identities=8% Similarity=0.136 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeechhhHHHHHHHHHHHHHHHHHHh
Q 003998 311 YSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRS 373 (780)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~m~w~s~~~l~~~ly~~~~~~g~~~~~~ 373 (780)
...+...+.+.+.++++++++++.++++.....++......++...++.-+|..+++.++...
T Consensus 95 ~~~l~~Tl~l~~~a~~la~~iGi~lGi~~~~~~~~~~d~~~~~~~~~~~siP~f~l~~lli~~ 157 (314)
T TIGR02789 95 ARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWG 157 (314)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666666666554332222223333334444444456777677666544
No 96
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=27.93 E-value=5e+02 Score=30.08 Aligned_cols=73 Identities=10% Similarity=-0.057 Sum_probs=37.0
Q ss_pred HHHHHHHHhh-chhhHH-HHHHHHHhhHHHHHHHHhhccccCCcch-hhhHHhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 003998 409 MLTMAYLVAG-LTGGFL-TFIVATSMLPAWIFFCISINFYGRRSLR-STLFYVVPLIPCITYSVYFGGFVVQFLIEKMGM 485 (780)
Q Consensus 409 ~l~~~~~~~g-i~say~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~fvp~~Gr 485 (780)
++++.+.+.| +|+.+. +.+..+|+.+...+ .+. .+..... ......-..+.|++...-+....-.++.|.++|
T Consensus 143 ~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i-~~t---~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 143 FLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDI-FLT---YGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-HHH---hCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 3444444444 888887 44444454332221 111 1111111 221222346677777766666676778898888
No 97
>COG2245 Predicted membrane protein [Function unknown]
Probab=26.23 E-value=7e+02 Score=25.28 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=24.6
Q ss_pred cccCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhhchhHHHHhhhhhh
Q 003998 481 EKMGMMGAFPSPYGYYVQDIVVAAAVGAVTGWCVGPLLPICGLWLARS 528 (780)
Q Consensus 481 p~~Gr~G~~~~p~~~~~pd~~ia~~~~~~~~l~~~~l~Pli~~~~~~~ 528 (780)
=+.++.|+-.+ |+.-.+.+......+...+.+-.+...+.||
T Consensus 81 ~~~~~~~~~~~------~~~~~~~l~~~Lag~Vi~wIl~Iisayf~kk 122 (182)
T COG2245 81 LVALLLGTFML------PAHGLSALGSFLAGFVILWILYIISAYFQKK 122 (182)
T ss_pred HHHHhcccccC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777 6665555555555555556555555555554
No 98
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=21.87 E-value=1.4e+02 Score=33.42 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=42.0
Q ss_pred CCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 003998 176 PGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNS 237 (780)
Q Consensus 176 ps~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a 237 (780)
.++||.+.|.+ .|+|++.+... +...-|++. |+++.+.+....+.+..++..+++.
T Consensus 338 ~g~tD~~~~~~--~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA--KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh--CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46799988864 68999866432 223567765 6788999999999999999888763
No 99
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=20.94 E-value=1.7e+02 Score=32.97 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCCCchHHHhhcCCCCcEEEEEEecC-CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 176 PGDTDYRIFSQDYGDIPGLDIIFLIG-GYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 176 ps~TD~~~F~~~~~GIPgld~a~~~~-~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
+++||...|.+ .|+|.+.+..... ....|++.. +++.+.+.+..+.+..++.++++
T Consensus 343 ~g~tDa~~~~~--~gip~v~fgp~~~~~~~aH~~dE---~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 343 PGSTDSRYIRA--AGVPALGFSPMNNTPVLLHDHNE---FLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred cCcchHHHHHh--CCCCeEEECCccCCcccccCCCC---ceEHHHHHHHHHHHHHHHHHhhc
Confidence 56799888864 6999986654322 225898766 68899999999999999988764
Done!