Query 003998
Match_columns 780
No_of_seqs 335 out of 1934
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kas_A Transferrin receptor pr 100.0 1.8E-35 6.1E-40 345.8 16.0 277 30-313 261-567 (640)
2 3fed_A Glutamate carboxypeptid 100.0 5.1E-34 1.7E-38 336.5 9.1 277 30-312 307-633 (707)
3 4f9u_A CG32412; alpha/beta hyd 100.0 1.7E-31 5.8E-36 288.8 20.1 199 32-236 63-299 (312)
4 4fuu_A Leucine aminopeptidase; 100.0 1.9E-31 6.4E-36 288.2 19.0 194 31-233 78-307 (309)
5 4fai_A CG5976, isoform B; alph 100.0 2E-30 6.9E-35 282.6 19.4 196 32-233 90-321 (330)
6 3iib_A Peptidase M28; YP_92679 100.0 7.5E-29 2.6E-33 280.5 19.6 202 31-240 231-436 (444)
7 3pb6_X Glutaminyl-peptide cycl 100.0 1E-27 3.5E-32 260.5 19.4 195 32-233 93-326 (330)
8 3tc8_A Leucine aminopeptidase; 100.0 9.1E-28 3.1E-32 259.3 18.6 192 32-233 79-308 (309)
9 3gux_A Putative Zn-dependent e 99.9 9.2E-28 3.1E-32 259.6 17.0 192 32-233 81-312 (314)
10 2ek8_A Aminopeptidase; metallo 99.9 6.4E-27 2.2E-31 263.1 22.5 203 31-241 199-406 (421)
11 1tkj_A Aminopeptidase, SGAP; d 99.9 1.1E-26 3.7E-31 247.9 19.2 196 34-241 63-282 (284)
12 2afw_A Glutaminyl-peptide cycl 99.9 1.4E-26 4.7E-31 252.3 18.4 195 32-234 85-326 (329)
13 1rtq_A Bacterial leucyl aminop 99.9 3.1E-25 1.1E-29 238.3 18.5 203 34-241 74-293 (299)
14 3k9t_A Putative peptidase; str 99.9 3.2E-22 1.1E-26 218.9 22.7 201 2-237 150-356 (435)
15 4h2k_A Succinyl-diaminopimelat 99.5 4.2E-13 1.4E-17 141.6 15.7 184 34-236 50-268 (269)
16 3t68_A Succinyl-diaminopimelat 99.5 4.8E-13 1.6E-17 141.0 15.5 188 34-236 50-268 (268)
17 1vhe_A Aminopeptidase/glucanas 99.2 3.3E-11 1.1E-15 133.0 13.4 151 69-236 182-354 (373)
18 2wyr_A Cobalt-activated peptid 99.2 2.5E-11 8.6E-16 131.6 12.0 147 69-233 171-331 (332)
19 1y0y_A FRV operon protein FRVX 99.2 3E-11 1E-15 132.2 10.6 149 69-236 180-350 (353)
20 2gre_A Deblocking aminopeptida 99.2 1.1E-10 3.6E-15 127.7 11.9 146 69-232 184-343 (349)
21 1q7l_A Aminoacylase-1; catalys 99.1 1.4E-10 4.8E-15 116.7 11.8 95 34-130 57-174 (198)
22 2fvg_A Endoglucanase; TM1049, 99.1 1.2E-10 4E-15 126.9 8.0 149 69-236 165-335 (340)
23 2zog_A Cytosolic non-specific 98.9 4.8E-09 1.6E-13 119.1 12.7 96 36-134 83-201 (479)
24 3ct9_A Acetylornithine deacety 98.9 7.4E-09 2.5E-13 113.2 11.5 93 35-134 52-164 (356)
25 1cg2_A Carboxypeptidase G2; me 98.9 6.1E-09 2.1E-13 115.2 10.8 95 35-135 70-181 (393)
26 3dlj_A Beta-Ala-His dipeptidas 98.8 1.4E-08 4.8E-13 115.7 12.4 97 35-134 89-208 (485)
27 2pok_A Peptidase, M20/M25/M40 98.8 8.9E-09 3.1E-13 117.1 10.4 98 35-134 92-211 (481)
28 3n5f_A L-carbamoylase, N-carba 98.8 1.1E-08 3.8E-13 113.7 10.9 84 33-119 55-143 (408)
29 3pfo_A Putative acetylornithin 98.8 1.2E-08 4.2E-13 114.0 11.0 96 33-134 88-204 (433)
30 3tx8_A Succinyl-diaminopimelat 98.7 7.2E-08 2.5E-12 105.5 11.6 95 35-134 57-167 (369)
31 3ife_A Peptidase T; metallopep 98.6 3E-08 1E-12 111.3 8.2 97 32-133 77-224 (434)
32 3gb0_A Peptidase T; NP_980509. 98.6 7E-08 2.4E-12 105.7 9.4 96 35-136 56-169 (373)
33 2rb7_A Peptidase, M20/M25/M40 98.6 4.4E-08 1.5E-12 107.4 7.0 93 36-133 51-164 (364)
34 2v8h_A Beta-alanine synthase; 98.6 9.5E-08 3.3E-12 108.6 9.5 81 33-117 90-175 (474)
35 3pfe_A Succinyl-diaminopimelat 98.6 1.2E-07 4E-12 107.7 9.6 95 35-134 77-193 (472)
36 1vgy_A Succinyl-diaminopimelat 98.5 2.5E-07 8.6E-12 102.2 11.9 95 34-133 50-167 (393)
37 1z2l_A Allantoate amidohydrola 98.5 5.8E-08 2E-12 108.3 6.7 82 33-117 59-145 (423)
38 1vho_A Endoglucanase; structur 98.5 4.1E-07 1.4E-11 98.9 12.6 152 69-236 170-336 (346)
39 1ylo_A Hypothetical protein SF 98.5 6.5E-07 2.2E-11 97.2 14.2 150 69-235 167-337 (348)
40 3khx_A Putative dipeptidase sa 98.5 2E-07 6.7E-12 106.5 10.2 92 35-133 86-197 (492)
41 3rza_A Tripeptidase; phosphory 98.5 1.9E-07 6.6E-12 103.3 9.2 97 35-135 74-189 (396)
42 1fno_A Peptidase T; metallo pe 98.4 2.3E-07 7.9E-12 103.3 8.1 96 33-134 53-198 (417)
43 1lfw_A PEPV; hydrolase, dipept 98.4 6.4E-07 2.2E-11 101.2 11.4 80 36-120 69-168 (470)
44 3isz_A Succinyl-diaminopimelat 98.4 7.4E-07 2.5E-11 97.2 11.2 96 33-133 46-164 (377)
45 3mru_A Aminoacyl-histidine dip 98.4 5E-07 1.7E-11 103.1 8.6 95 33-134 54-175 (490)
46 2f7v_A Aectylcitrulline deacet 98.4 9E-07 3.1E-11 97.0 10.1 82 35-133 58-159 (369)
47 1xmb_A IAA-amino acid hydrolas 98.4 1.3E-06 4.5E-11 97.4 11.5 91 35-132 71-176 (418)
48 3cpx_A Aminopeptidase, M42 fam 98.3 1.5E-06 5.3E-11 93.7 10.0 143 69-233 163-320 (321)
49 1ysj_A Protein YXEP; M20 famil 98.3 2.9E-06 1E-10 94.1 11.2 92 35-131 76-181 (404)
50 2qyv_A XAA-His dipeptidase; YP 98.2 1.5E-06 5.1E-11 98.9 8.4 95 34-135 52-173 (487)
51 3kl9_A PEPA, glutamyl aminopep 98.1 1.4E-05 4.8E-10 87.5 13.5 150 68-235 179-345 (355)
52 3ram_A HMRA protein; two-domai 98.1 4.7E-06 1.6E-10 92.3 8.5 95 35-134 61-158 (394)
53 3io1_A Aminobenzoyl-glutamate 98.0 1.4E-05 4.7E-10 90.0 10.2 95 34-133 95-210 (445)
54 2vpu_A TET3, 354AA long hypoth 96.8 0.0051 1.7E-07 67.1 10.9 151 68-236 182-349 (354)
55 2wzn_A TET3, 354AA long hypoth 96.1 0.082 2.8E-06 54.8 15.1 57 175-236 293-349 (354)
56 3isx_A Endoglucanase; TM1050, 95.9 0.021 7.2E-07 62.0 9.3 144 68-231 177-341 (343)
57 2ijz_A Probable M18-family ami 84.4 1.5 5.1E-05 48.8 7.2 141 67-218 231-412 (428)
58 2glj_A Probable M18-family ami 68.8 1.7 5.7E-05 48.9 1.8 43 68-114 258-300 (461)
59 2glf_A Probable M18-family ami 67.9 2.2 7.4E-05 47.8 2.4 41 68-113 246-286 (450)
60 1y7e_A Probable M18-family ami 66.2 1 3.4E-05 50.7 -0.7 45 68-115 252-296 (458)
61 2vpu_A TET3, 354AA long hypoth 44.8 11 0.00039 40.5 3.2 30 30-64 47-76 (354)
62 3vat_A Dnpep, aspartyl aminope 43.6 8.9 0.0003 43.3 2.1 46 68-114 282-331 (496)
63 1q7l_B Aminoacylase-1; catalys 41.0 60 0.0021 26.9 6.6 59 174-237 22-81 (88)
64 3isx_A Endoglucanase; TM1050, 28.9 34 0.0011 36.7 3.6 30 30-64 48-77 (343)
65 2lx0_A Membrane fusion protein 25.7 37 0.0013 22.6 1.9 18 501-518 8-25 (32)
No 1
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=100.00 E-value=1.8e-35 Score=345.84 Aligned_cols=277 Identities=20% Similarity=0.184 Sum_probs=215.9
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHh----cCCCCCCCEEEEEeCcc
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTID----SGWIPPRPIIFLFNGAE 105 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~----~~~~p~r~IiFlf~~aE 105 (780)
....++.||||+++|++ +++++|+++||+|||. +||.||++|||+|||+||.|++ .|++|+|+|+|++|+||
T Consensus 261 ~~~~~~~NVi~~i~G~~--~~~~~vvvgaH~Ds~~--~Ga~D~~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~E 336 (640)
T 3kas_A 261 LKEIKILNIFGVIKGFV--EPDHYVVVGAQRDAWG--PGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAG 336 (640)
T ss_dssp EEEEEEEEEEEEECCSS--EEEEEEEEEEECCCSS--CCTTTTHHHHHHHHHHHHHHHHHHHTSCCCCSEEEEEEEESSG
T ss_pred EEeeeEEEEEEEEeCCc--CCCCceeeecccCCCC--CCCCcCcHHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEECCc
Confidence 35678999999999974 3578999999999995 9999999999999999999985 37899999999999999
Q ss_pred cCCccchHHHHHhc--CcccceeEEEEeccCCCCCcceEEecCCC-CchhhHhhhhccCcccc-ccccc-cC----CCCC
Q 003998 106 ELFMLGAHGFMKAH--KWRDSVGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAH-SAAQD-VF----PVIP 176 (780)
Q Consensus 106 E~gl~GS~~fv~~h--~~~~~i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~~~~~~P~~~-~~~~~-~f----~~ip 176 (780)
|.|++||++|+++| ++.++++++||+|++|.|++.+.++++|. .++++.+.+.+++|.+. ++.++ .+ +.++
T Consensus 337 E~gl~GS~~~~~~~~~~l~~~~~a~iNlD~~~~G~~~l~~~~~p~l~~l~~~~~~~v~~P~~~~tl~~~~~w~~~~~~~~ 416 (640)
T 3kas_A 337 DFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLT 416 (640)
T ss_dssp GGTSHHHHHHHHHTTTTGGGTEEEEEECTTCBSCSSEEEEEECGGGHHHHHHHHTTCBCTTTCSBSCCCTTGGGGCCCCC
T ss_pred ccCchhHHHHHHhhhhhhhhCEEEEEecccCccCCCceEEEeCHHHHHHHHHHHHhCCCCCCCCceecccccccccCCCC
Confidence 99999999999998 34589999999999999888888888875 34555566778888753 34432 22 5678
Q ss_pred CCCchHHHhhcCCCCcEEEEEEecC-CC-CCCCcCCCcCCCCH------HHHHHHHHHHHHHHHHHhcCcccc-cchhh-
Q 003998 177 GDTDYRIFSQDYGDIPGLDIIFLIG-GY-YYHTSHDTVDRLLP------GSVQARGDNLFNVLKAFSNSSKLQ-NAHDR- 246 (780)
Q Consensus 177 s~TD~~~F~~~~~GIPgld~a~~~~-~~-~YHT~~Dt~d~id~------~~lq~~g~~~l~l~~~la~a~~l~-~~~~~- 246 (780)
++|||.+|.+ ++||||+++++..+ .| +|||.+||+++++. ...+.+++.+..++.+|++++.++ +..++
T Consensus 417 ~~sD~~~F~~-~~GIP~~~~~~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~~lP~~~~~y~ 495 (640)
T 3kas_A 417 LDNAAFPFLA-YSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNLDYERYN 495 (640)
T ss_dssp TTSTHHHHHH-HHCCCEEEEEEECSSCCTTTTSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSSSCCCCTTHHH
T ss_pred CCcchHHHHH-hCCCCeeeccccCCCCCCCcCCccccHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 9999999975 68999999999876 45 59999999998753 356667888888999999877665 32222
Q ss_pred -------hhhhhccCCCCCCCeeEcchhhhhhhhccHHHHHHHhhhhHHhhhccceEEEEecCccchhhhhHHH
Q 003998 247 -------ASFEATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSD 313 (780)
Q Consensus 247 -------~~~~~~~~~~~~~~~V~fd~lg~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (780)
.+++. .........+.|+.|..++..|... |.-++..+.......+..+|++|+|+|.+||.|+.
T Consensus 496 ~~l~~~~~~l~~-~~~~~~~~~~~~~~l~~a~~~f~~a-a~~~~~~~~~~~~~~~~~~r~~N~~l~~~er~fl~ 567 (640)
T 3kas_A 496 SQLLSFVRDLNQ-YRADIKEMGLSLQWLYSARGDFFRA-TSRLTTDFGNAEKTDRFVMKKLNDRVMRVEYHFLS 567 (640)
T ss_dssp HHHHHHHHHHGG-GTTTTTTTTCCCHHHHHHHHHHHHH-HHHHHHHHHHSCTTCHHHHHHHHHHHHHHGGGGBC
T ss_pred HHHHHHHHHHHH-HHHhhhccCCChHHHHHHHHHHHHH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcC
Confidence 12222 2233344578999999999999884 55565444333333445677889999999986553
No 2
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=100.00 E-value=5.1e-34 Score=336.51 Aligned_cols=277 Identities=23% Similarity=0.232 Sum_probs=208.8
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHh---cCCCCCCCEEEEEeCccc
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTID---SGWIPPRPIIFLFNGAEE 106 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~---~~~~p~r~IiFlf~~aEE 106 (780)
....++.||||+++|++ +++++|+++||+|||+ +||.||++|||++||+||.|++ .|++|+|+|+|++|+|||
T Consensus 307 ~~~~~~~NVi~~i~G~~--~~~~~vllgaH~Ds~~--~Ga~D~~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~~~~~EE 382 (707)
T 3fed_A 307 NKITRIYNVVGTIRGSV--EPDRYVILGGHRDSWV--FGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEE 382 (707)
T ss_dssp EEEEEEEEEEEEECCSS--EEEEEEEEEEECCCSS--SCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGG
T ss_pred EEEEEEEEEEEEEeCCC--CCCceEEEeccccCCC--CCCccCcHHHHHHHHHHHHHHhhhhccCCCCCCEEEEEeCCcc
Confidence 45678999999999974 3678999999999998 7999999999999999999975 589999999999999999
Q ss_pred CCccchHHHHHhcC--cccceeEEEEeccCCCCCcceEEecCCC-CchhhHhhhhccCcccc----ccccc---------
Q 003998 107 LFMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAH----SAAQD--------- 170 (780)
Q Consensus 107 ~gl~GS~~fv~~h~--~~~~i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~~~~~~P~~~----~~~~~--------- 170 (780)
.|+.||++|+++|+ +.++++++||+|++|.|+..+.++++|. .++++.+.+.+++|.++ ++.+.
T Consensus 383 ~Gl~GS~~~~~~~~~~~~~~~~a~iNlD~~~~g~~~~~~~~sp~l~~~i~~~~~~v~~P~~~~~~~tly~~w~~~~~~~~ 462 (707)
T 3fed_A 383 FGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPE 462 (707)
T ss_dssp GTSHHHHHHHHHHHHHHHHHEEEEEECSCSBSCSSEEEEEECGGGHHHHHHHHTTSBCCSTTCTTSBHHHHHHHHSEETT
T ss_pred ccchhHHHHHHhcchhhhhCEEEEEEecccccCCceEEEecCHHHHHHHHHHHhcCCCCccccccccHHHHHHhhccccc
Confidence 99999999999885 5789999999999999988888998875 45556666778888752 22221
Q ss_pred -----cCCCCCCCCchHHHhhcCCCCcEEEEEEecC-------CC-CCCCcCCCcCCC----CHH--HHHHHHHHHHHHH
Q 003998 171 -----VFPVIPGDTDYRIFSQDYGDIPGLDIIFLIG-------GY-YYHTSHDTVDRL----LPG--SVQARGDNLFNVL 231 (780)
Q Consensus 171 -----~f~~ips~TD~~~F~~~~~GIPgld~a~~~~-------~~-~YHT~~Dt~d~i----d~~--~lq~~g~~~l~l~ 231 (780)
..+...++|||.+|.+ +.|||++++++..+ .| .|||.+||++++ ||+ .-+.+++.+..++
T Consensus 463 ~~~~p~i~~lgsgSD~~~F~~-~~GIPs~~~~f~~~~~~~~~~~y~~YHT~~Dt~~~~~~~~Dp~f~~h~~~a~~~g~l~ 541 (707)
T 3fed_A 463 NKNLPRINKLGSGSDFEAYFQ-RLGIASGRARYTKNKKTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALV 541 (707)
T ss_dssp EEEEECEECCCSSSTTHHHHH-TTCCCEEEEEEECCTTTCCSSSCTTTTSTTCCHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred ccCCcccccCCCCCChHHHHH-hCCcceeccccccCccccccCCCCCcCCCcccHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 0123568999999985 79999999999855 44 799999999976 554 3344677788888
Q ss_pred HHHhcCcccc-cchhhh--------hh---hhccCCCCCCCeeEcchhhhhhhhccHHHHHHHhhhhHHhhhccceEEEE
Q 003998 232 KAFSNSSKLQ-NAHDRA--------SF---EATGIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRL 299 (780)
Q Consensus 232 ~~la~a~~l~-~~~~~~--------~~---~~~~~~~~~~~~V~fd~lg~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~ 299 (780)
.+|++++.++ +..++. ++ +...+...+...+.|+-|..++..|.. +|..++.....+....+..+|+
T Consensus 542 l~La~~~vlP~~~~~ya~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~L~~a~~~~~~-~a~~~~~~~~~~~~~~~~~~r~ 620 (707)
T 3fed_A 542 YELVDSKIIPFNIQDYAEALKNYAASIYNLSKKHDQQLTDHGVSFDSLFSAVKNFSE-AASDFHKRLIQVDLNNPIAVRM 620 (707)
T ss_dssp HHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHTCCCHHHHHHHHHHHH-HHHHHHHHHTTCCTTCHHHHHH
T ss_pred HHHhCCccCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhhcCcCHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCHHHHHH
Confidence 8888877664 222211 11 111111112345788889999999977 5555655333222234456677
Q ss_pred ecCccchhhhhHH
Q 003998 300 LNSGLHSWFATYS 312 (780)
Q Consensus 300 ~~~~~~~~~~~~~ 312 (780)
+|+|+|.+||.|+
T Consensus 621 ~N~~l~~~Er~fl 633 (707)
T 3fed_A 621 MNDQLMLLERAFI 633 (707)
T ss_dssp HHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHhc
Confidence 8999988888544
No 3
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=99.97 E-value=1.7e-31 Score=288.79 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=148.7
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCC-----CCCCCCCchhHHHHHHHHHHHHHh-----cCCCCCCCEEEEE
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPL-----SSPGAGDCGSCVASMLELARLTID-----SGWIPPRPIIFLF 101 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~-----~spGA~Dn~sGvA~mLElaR~L~~-----~~~~p~r~IiFlf 101 (780)
..+.+||||+++|+ ++++|+++|||||++ ..+||+|||||||+|||+||+|++ .+++|+|+|+|+|
T Consensus 63 ~~~~~Nii~~~~~~----~~~~vvl~aHyDs~~~~~~~~~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~ 138 (312)
T 4f9u_A 63 ELTFANVVGTINPQ----AQNFLALACHYDSKYFPNDPGFVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIF 138 (312)
T ss_dssp EEEEEEEEEEESTT----SSEEEEEEEECCCCCCTTCTTCCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEE
T ss_pred ceeEEEEEEEECCC----CCceEEEEEEEecCCCCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEE
Confidence 45788999999996 357999999999985 358999999999999999999975 2468999999999
Q ss_pred eCcccCC--------ccchHHHHHhcCc-------------ccceeEEEEeccCCCCCcceEEecCCCCchh----hHhh
Q 003998 102 NGAEELF--------MLGAHGFMKAHKW-------------RDSVGAVINVEASGTGGLDLVCQSGPSSWPS----SVYA 156 (780)
Q Consensus 102 ~~aEE~g--------l~GS~~fv~~h~~-------------~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~----~~y~ 156 (780)
|+|||.| |+||++|++++++ .+++.++||+|++|..++..........+.. +..+
T Consensus 139 fdaEE~G~~~~~~~~L~GS~~~a~~~~~~~~~~~~~~~~~~~~~i~~~inlDmvg~~~~~~~~~~~~~~~~~~~~~~i~~ 218 (312)
T 4f9u_A 139 FDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEK 218 (312)
T ss_dssp ESCCSCSSSCSSSSSCHHHHHHHHHHHHCBC-------CBGGGGEEEEEEEESCCSSSCCEEECCGGGHHHHHHHHHHHH
T ss_pred ecCccccccCCccccccChHHHHHHHHhhccccccccccccccceeeeeeeeccccCCCCceEEEeccchhhhHHHHHHH
Confidence 9999988 9999999998743 2478999999999988765432211111111 1111
Q ss_pred ---hhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHH
Q 003998 157 ---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 157 ---~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~ 233 (780)
+....+...............+|||.+|.+ .|||++++.......+|||+.||+|+||++++|++++++.+++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pF~~--~GIP~l~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e 296 (312)
T 4f9u_A 219 SLRTAGQLEGNNNMFLSRVSGGLVDDDHRPFLD--ENVPVLHLVATPFPDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQ 296 (312)
T ss_dssp HHHHTTCSSSSCCCEEEEECSSCCCCTTHHHHT--TTCCEEEEECSSCCTTTTSTTCSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccccccccccCCCCCCCchHHHHH--CCCCEEEEECCCCCCCCCCCccChhhCCHHHHHHHHHHHHHHHHH
Confidence 111111000000000111224689999985 799999998777677899999999999999999999999999877
Q ss_pred Hhc
Q 003998 234 FSN 236 (780)
Q Consensus 234 la~ 236 (780)
...
T Consensus 297 ~l~ 299 (312)
T 4f9u_A 297 YLK 299 (312)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 4
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.9e-31 Score=288.22 Aligned_cols=194 Identities=19% Similarity=0.170 Sum_probs=146.9
Q ss_pred eeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC-------------CCCCCchhHHHHHHHHHHHHHhcCCCCCCCE
Q 003998 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-------------PGAGDCGSCVASMLELARLTIDSGWIPPRPI 97 (780)
Q Consensus 31 ~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s-------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~I 97 (780)
.+.+.+|||++++|+. ++.|+++|||||++.+ |||+||+||||+|||+||+|++. +|+|+|
T Consensus 78 ~~~~~~Nii~~~~g~~----~~~i~l~aH~Ds~~~~~~~~~~~~~~~~~~GA~D~aSG~a~lLE~ar~l~~~--~~~~~i 151 (309)
T 4fuu_A 78 TLLKARNIIGSYKPES----KKRIALFAHWDTRPWADNDADEKNHHTPILGANDGASGVGALLEIARLVNQQ--QPELGI 151 (309)
T ss_dssp CEEEEEEEEEEESTTC----SSEEEEEEECCCCSCCTTCSSGGGTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEE
T ss_pred CcceeEEEEEEECCCC----CceEEEEeecCCCCCCCCccccccccCCcCCcccCchhHHHHHHHHHHHhhc--CCCCce
Confidence 3457899999999963 4789999999998754 69999999999999999999975 689999
Q ss_pred EEEEeCcccCCc--------------cchHHHHHhc-CcccceeEEEEeccCCCCCcceEEecCCCC---chhhHhhhhc
Q 003998 98 IFLFNGAEELFM--------------LGAHGFMKAH-KWRDSVGAVINVEASGTGGLDLVCQSGPSS---WPSSVYAQSA 159 (780)
Q Consensus 98 iFlf~~aEE~gl--------------~GS~~fv~~h-~~~~~i~a~INlD~~G~gg~~~lf~~gp~~---~l~~~y~~~~ 159 (780)
+|+||+|||.|+ +||+.|++++ ...++++++||+|++|.++..+........ .+.+...+..
T Consensus 152 ~~~~~~~EE~Gl~~~~~~~~~~~~~l~GS~~~~~~~~~~~~~i~~~inlDmvG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (309)
T 4fuu_A 152 DIIFLDAEDYGTPQFYEGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLDMVGGENSVFLKEGYSEEFAPDINKKVWKAA 231 (309)
T ss_dssp EEEEECSSSCCCCTTCCSCCCGGGSCHHHHHHHHSCSSTTCCCSEEEEECSCCBTTCCEEECHHHHHHCHHHHHHHHHHH
T ss_pred EEEeecccccCccccccchhhhhhhhcchhHHHhcccccCcceEEEEeeeccCCCCCceEeecCchhhhHHHHHHHHHHH
Confidence 999999999995 8999999976 346789999999999998877665543221 1222221111
Q ss_pred cCc-cccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecC----CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHH
Q 003998 160 IYP-MAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIG----GYYYHTSHDTVDRLLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 160 ~~P-~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~----~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~ 233 (780)
... ........ ......+||.+|.+ .+|||++++..... ..+|||++||+|+||+++||++|+++++++.+
T Consensus 232 ~~~~~~~~~~~~--~~~~~~sDh~~F~~-~~GIP~l~~~~~~~~~~~~~~yHT~~Dt~d~id~~~L~~vg~~vl~~ly~ 307 (309)
T 4fuu_A 232 KKAGYGKTFIDE--RGDTITDDHLFINR-LARIKTIDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYN 307 (309)
T ss_dssp HHTTCTTTEEEE--ECCCCCCHHHHHHH-HTCCCEEEECBC----CCCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccccccc--CCCCCCCChHHHHh-cCCCCEEEEeccCCCCCCCCCCCCcccchhhCCHHHHHHHHHHHHHHHhh
Confidence 111 10000000 11224579999985 47999999976432 34899999999999999999999999999863
No 5
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=99.97 E-value=2e-30 Score=282.61 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=145.9
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC----CCCCCCchhHHHHHHHHHHHHHh---cCCCCCCCEEEEEeCc
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----SPGAGDCGSCVASMLELARLTID---SGWIPPRPIIFLFNGA 104 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~----spGA~Dn~sGvA~mLElaR~L~~---~~~~p~r~IiFlf~~a 104 (780)
..+..||||+++|+ .+++|+++|||||++. .+||+|||||||+|||+||+|++ .+++|+|+|+|+||+|
T Consensus 90 ~~~~~Nii~~~~~~----~~~~i~l~aHyDs~~~~~~~~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdg 165 (330)
T 4fai_A 90 KLHFHNIIATLNPN----AERYLVLSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDG 165 (330)
T ss_dssp EEEEEEEEEESCTT----CSEEEEEEEECCCCCCTTSCCCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESC
T ss_pred ceeEEEEEEEECCC----CCcEEEEEEeecccccccCCCCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEecc
Confidence 45788999999986 3578999999999864 47999999999999999999975 3578999999999999
Q ss_pred ccCCc--------cchHHHHHhc---CcccceeEEEEeccCCCCCcceEEecCCCCchhhHhh---hhc-------cCc-
Q 003998 105 EELFM--------LGAHGFMKAH---KWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYA---QSA-------IYP- 162 (780)
Q Consensus 105 EE~gl--------~GS~~fv~~h---~~~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~~~y~---~~~-------~~P- 162 (780)
||.|+ +||++|+++. ...++++++||+||+|.+++.......+..+...... +.. ..+
T Consensus 166 EE~Gl~~~~~~~llGS~~~a~~~~~~~~~~~i~~~inlDmiG~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
T 4fai_A 166 EEAFEEWGPKDSIYGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYAS 245 (330)
T ss_dssp CSCSSSCBTTBSCHHHHHHHHHHHHTTCSTTEEEEEEECSCSSSSCCEEECCGGGHHHHHHHHHHHHHHHHTTC------
T ss_pred ccccccccccchhhhhHHHHhcchhccchhceeEEEEeccCccCCCCceeeccCcchHHHHHHHHHHHhhhhhhhhhhhc
Confidence 99995 7999999864 2457899999999999988766543322211111110 000 000
Q ss_pred --cccccccccC-----CCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHH
Q 003998 163 --MAHSAAQDVF-----PVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 163 --~~~~~~~~~f-----~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~ 233 (780)
.........| ......|||.+|.+ .|||++++.....+.+|||+.||+|+||+++++++++++..++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~SDH~pF~~--~GIP~l~~i~~~~~~~yHT~~Dt~d~iD~~tl~~~~~ii~~Fv~E 321 (330)
T 4fai_A 246 SGVAQRDPTRYFQSQAMRSSFIEDDHIPFLR--RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALE 321 (330)
T ss_dssp ---------CCEEEEEETTCCCCSTTHHHHT--TTCCEEEECCSSCCTTTTSTTSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCCCCCCchHHHHH--CCCCEEEEECCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHH
Confidence 0000000011 11123589999986 799999998666677999999999999999999999998887754
No 6
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.96 E-value=7.5e-29 Score=280.54 Aligned_cols=202 Identities=21% Similarity=0.213 Sum_probs=160.3
Q ss_pred eeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCcc
Q 003998 31 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML 110 (780)
Q Consensus 31 ~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~ 110 (780)
...+..|||++++|++ .+++.|+++||+|||+.++||.||++|+|++||++|.|++.+++|+|+|+|++|++||.|+.
T Consensus 231 ~~~~~~Nvi~~~~g~~--~~~~~i~~~aH~Ds~~~g~Ga~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl~ 308 (444)
T 3iib_A 231 GETTSYNVIAEVKGST--KADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGLL 308 (444)
T ss_dssp EEEEEEEEEEEECCST--EEEEEEEEEEECCCCSSSCCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTSH
T ss_pred CCceeEEEEEEEeCCC--CCCCEEEEEeecccCCCCCCCccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCCc
Confidence 3568899999999975 25689999999999999999999999999999999999998889999999999999999999
Q ss_pred chHHHHHhcCc-ccceeEEEEeccCCCCCcceEEecCCC-CchhhHhhhhccCccccccccccCCCCCCCCchHHHhhcC
Q 003998 111 GAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDY 188 (780)
Q Consensus 111 GS~~fv~~h~~-~~~i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~ 188 (780)
||++|+++|+. .+++.++||+|+.|.....+.++..+. ..+.+.+.+.. .+.+... ......++|||.+|.+
T Consensus 309 Gs~~~~~~~~~~~~~~~~~~n~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~---~~~~~~~~SD~~~f~~-- 382 (444)
T 3iib_A 309 GGKTYAKEHEAELEKHYIAAESDFGAGPIYQIDWRVADTAHSPVINAMKVA-EPLGVAA---GNNKASGGPDVSMLPA-- 382 (444)
T ss_dssp HHHHHHHHTGGGGGGEEEEEECCSTTCCEEEEEEECCHHHHHHHHHHGGGG-GGGTCEE---CCSCCCCCGGGTTSGG--
T ss_pred CHHHHHHhhHhhhhceeEEEECcCCCCcceEEEeecChhhHHHHHHHHHHH-hhcCCcc---ccCCCCCCCccHHHHH--
Confidence 99999998843 468999999998664433333343322 23344443321 2222111 0223457899999985
Q ss_pred CCCcEEEEEEecCC--CCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcCccc
Q 003998 189 GDIPGLDIIFLIGG--YYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKL 240 (780)
Q Consensus 189 ~GIPgld~a~~~~~--~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a~~l 240 (780)
.|||++++...... .+|||+.||+|++|++.+++.++.+..+++.+|++++.
T Consensus 383 ~GiP~~~l~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~~ 436 (444)
T 3iib_A 383 LGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANSKVE 436 (444)
T ss_dssp GTCCEEEEEECCTTGGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCEEEeecCCCcCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 79999999865433 38999999999999999999999999999999997653
No 7
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=99.95 E-value=1e-27 Score=260.54 Aligned_cols=195 Identities=19% Similarity=0.140 Sum_probs=146.4
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC------CCCCCCchhHHHHHHHHHHHHHhc-----CCCCCCCEEEE
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS------SPGAGDCGSCVASMLELARLTIDS-----GWIPPRPIIFL 100 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~------spGA~Dn~sGvA~mLElaR~L~~~-----~~~p~r~IiFl 100 (780)
+.+..||||+++|+. ++.|+++|||||++. .+||+||++|||+|||+||.|++. +.+|+++|+|+
T Consensus 93 ~~~~~Nvia~~~g~~----~~~ivl~aH~Dsv~~~~g~~~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv 168 (330)
T 3pb6_X 93 PVDFGNVVATLDPRA----ARHLTLACHYDSKLFPPGSTPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLL 168 (330)
T ss_dssp EEEEEEEEEESCTTS----SEEEEEEEECCCCCCCTTSCCCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEE
T ss_pred CccceEEEEEECCCC----CceEEEEeccCCCCCCCCCcCcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 667899999999963 478999999999763 389999999999999999999863 35799999999
Q ss_pred EeCcccC--------CccchHHHHHhcC---------cccceeEEEEeccCCCCCcceEEecCCC-CchhhHhh---hhc
Q 003998 101 FNGAEEL--------FMLGAHGFMKAHK---------WRDSVGAVINVEASGTGGLDLVCQSGPS-SWPSSVYA---QSA 159 (780)
Q Consensus 101 f~~aEE~--------gl~GS~~fv~~h~---------~~~~i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~---~~~ 159 (780)
||+|||. |++||++|+++.. ..++++++||+|++|..++.+.. ..+. .+..+..+ +..
T Consensus 169 ~~~~EE~f~~w~~~~gl~GS~~~a~~~~~~~~~~~~~~~~~i~~~inlDmiG~~~~~~~~-~~~~t~~~~~~l~~i~~~~ 247 (330)
T 3pb6_X 169 FLDGEEALKEWGPKDSLYGSRHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYS-HFPRTVRWFHRLRSIEKRL 247 (330)
T ss_dssp EESCCSCSSCCSTTSSCHHHHHHHHHHHHSBCSSCSBTTTTEEEEEEEESCSSSSCCBCC-CCGGGHHHHHHHHHHHHHH
T ss_pred EEcCcccccccCCCCCCccHHHHHHHHHhcCCccccchhhCeEEEEeccCCCCCCCCcee-ecCcchHHHHHHHHHHHHH
Confidence 9999999 9999999998531 35789999999999998765421 1111 12111111 110
Q ss_pred -------cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHH
Q 003998 160 -------IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLK 232 (780)
Q Consensus 160 -------~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~ 232 (780)
.+|................|||.+|.+ +|||++++........|||+.||+|+||++.++++++.+..++.
T Consensus 248 ~~~g~~~~~p~~~~~f~~~~~~~~~~SDH~pF~~--~GIP~~~~~~~~f~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~ 325 (330)
T 3pb6_X 248 HRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLR--RGVPVLHLISTPFPAVWHTPADTEVNLHPPTVHNLCRILAVFLA 325 (330)
T ss_dssp HHTTCCSSCCSSCSSBCSSCSSCCCSCTTHHHHT--TTCCEEEEECSSCCTTTTSTTCSGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHcCccccCCcccccccccccCCCCCCchHhHHH--CCCCEEEEEcCCCCCCCCCCcCchhhCCHHHHHHHHHHHHHHHH
Confidence 112111110000011235699999986 79999999865556799999999999999999999999999876
Q ss_pred H
Q 003998 233 A 233 (780)
Q Consensus 233 ~ 233 (780)
+
T Consensus 326 E 326 (330)
T 3pb6_X 326 E 326 (330)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=99.95 E-value=9.1e-28 Score=259.26 Aligned_cols=192 Identities=21% Similarity=0.214 Sum_probs=147.1
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC-------------CCCCCchhHHHHHHHHHHHHHhcCCCCCCCEE
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-------------PGAGDCGSCVASMLELARLTIDSGWIPPRPII 98 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s-------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~Ii 98 (780)
+.+..||||+++|+ +++.|+++||+||++.+ +||.||++|||+|||++|.|++. +|+++|+
T Consensus 79 ~~~~~Nvia~~~g~----~~~~ill~aH~Dsv~~~~~~p~~~~~~~~~~Ga~D~~sGva~~Le~ar~l~~~--~~~~~i~ 152 (309)
T 3tc8_A 79 KLEARNIIGSFDPE----NSKRVLLFAHWDSRPYSDHDPDPSKHRTPLDGADDGGSGVGALLEIARQIGQK--APGIGID 152 (309)
T ss_dssp EEEEEEEEEEESTT----CSSEEEEEEECCCCSCCTTCSSGGGTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEEE
T ss_pred cccceEEEEEECCC----CCceEEEEecccCCCCCCCCccccCCCccccCcccchHhHHHHHHHHHHHHhC--CCCCcEE
Confidence 56789999999995 34789999999999876 79999999999999999999987 4899999
Q ss_pred EEEeCcccCCc-------------cchHHHHHhcCc-ccceeEEEEeccCCCCCcceEEecCCCC---chhhHhhhhccC
Q 003998 99 FLFNGAEELFM-------------LGAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPSS---WPSSVYAQSAIY 161 (780)
Q Consensus 99 Flf~~aEE~gl-------------~GS~~fv~~h~~-~~~i~a~INlD~~G~gg~~~lf~~gp~~---~l~~~y~~~~~~ 161 (780)
|+++++||.|+ +||+.|+++++. .++++++||+|++|.++..+........ .+.+.+.+.+.
T Consensus 153 f~~~~~EE~Gl~~~~~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlD~~G~~~~~~~~~~~~~~~~~~l~~~~~~~a~- 231 (309)
T 3tc8_A 153 IIFFDAEDYGTPEFVTDYTPDSWCLGTQFWAKNPHVPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAAR- 231 (309)
T ss_dssp EEEECSCSCSCCTTCCSCCTTCSCHHHHHHHHSCSSTTCCCSEEEEEESCCBTTCCEEECHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEECccccccccccccccccccchhHHHHHhCCCccccceEEEEEecccCCCCCceeecccccchHHHHHHHHHHHHH-
Confidence 99999999999 999999985543 4689999999999998876533211111 12333322111
Q ss_pred cccc-c-cccccCCCCCCCCchHHHhhcCCCCcEEEEEEe------cCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHH
Q 003998 162 PMAH-S-AAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFL------IGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 162 P~~~-~-~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~------~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~ 233 (780)
..+. . +.....+. ..|||.+|.+ ++|||++++... ....+|||+.||+|+||++++|++++++++++.+
T Consensus 232 ~~g~~~~f~~~~~g~--~~sDh~~f~~-~~GiP~~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~vy~ 308 (309)
T 3tc8_A 232 DLGYGKYFINAAGGA--ITDDHQYVIS-GRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVIYN 308 (309)
T ss_dssp HHTCTTTEEEEECCC--CCCHHHHHHH-HHCCCEEEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred HcCCcceeccCCCCC--CCCccHHHHh-cCCCCEEEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHhc
Confidence 1110 0 00000111 3589999986 359999999765 2356999999999999999999999999999864
No 9
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.95 E-value=9.2e-28 Score=259.58 Aligned_cols=192 Identities=20% Similarity=0.231 Sum_probs=128.8
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC-------------CCCCCchhHHHHHHHHHHHHHhcCCCCCCCEE
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-------------PGAGDCGSCVASMLELARLTIDSGWIPPRPII 98 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s-------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~Ii 98 (780)
+.+..||||+++|+ +++.|+++||+||++.+ +||.||++|||+|||++|.|++. +++++|+
T Consensus 81 ~~~~~Nvia~~~g~----~~~~ill~aH~Dsv~~~~~~p~~~~~~~~~~GA~D~~sGva~~Le~ar~l~~~--~~~~~i~ 154 (314)
T 3gux_A 81 ILKSRNIIGAYKPE----SKKRILLCAHWDSRPYADNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQKE--QPALGID 154 (314)
T ss_dssp EEEEEEEEEEESTT----CSSEEEEEEECCCCC--------------------CHHHHHHHHHHHHHHHHS--CCSSEEE
T ss_pred cccceEEEEEECCC----CCceEEEEccccCCCcCCCCcccccCCcccCCCcccHHHHHHHHHHHHHHHhC--CCCCcEE
Confidence 45789999999995 34789999999999865 79999999999999999999987 4899999
Q ss_pred EEEeCcccCCc--------------cchHHHHHhcCc-ccceeEEEEeccCCCCCcceEEecCCC----CchhhHhhhhc
Q 003998 99 FLFNGAEELFM--------------LGAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPS----SWPSSVYAQSA 159 (780)
Q Consensus 99 Flf~~aEE~gl--------------~GS~~fv~~h~~-~~~i~a~INlD~~G~gg~~~lf~~gp~----~~l~~~y~~~~ 159 (780)
|+++++||.|+ +||++|+++++. .++++++||+|++|..+..+ +..+.. +++.+.+.+.+
T Consensus 155 fv~~~~EE~Gl~~~~~~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlDm~G~~~~~~-~~~g~~~~~~~~l~~~~~~~~ 233 (314)
T 3gux_A 155 IVFFDSEDYGIPEFYDGKYKQDTWCLGSQYWARTPHVQNYNARYGILLDMVGGKDATF-YYEGYSARTARSEMKKIWKKA 233 (314)
T ss_dssp EEEECSCCC-----------CTTSCHHHHHHHHSCSSTTCCCSEEEEEESCCBTTCCE-EECTTHHHHCHHHHHHHHHHH
T ss_pred EEEECCccccccccccccccccccchhHHHHHhCCcccccceeEEEEEeccCCCCCce-eeeccccccHHHHHHHHHHHH
Confidence 99999999999 999999985543 47899999999999988764 444432 12333332221
Q ss_pred cC-ccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEec-----C--CCCCCCcCCCcCCCCHHHHHHHHHHHHHHH
Q 003998 160 IY-PMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLI-----G--GYYYHTSHDTVDRLLPGSVQARGDNLFNVL 231 (780)
Q Consensus 160 ~~-P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~-----~--~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~ 231 (780)
.. .+......+. + ....|||.+|.+ .+|||++++.... + ..+|||+.||+|+||++++|++++++++++
T Consensus 234 ~~~g~~~~f~~~~-~-~~~~sDh~pF~~-~~GiP~l~~i~~~~~~~~~~f~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~~ 310 (314)
T 3gux_A 234 HELGYGKYFVKED-G-GETVDDHIYVNK-LARIPCVDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVI 310 (314)
T ss_dssp HHHTCTTTEEEEE-C-CCCCCHHHHHHH-HSCCCEEEEEBCC--------------------CBCHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccc-C-CCCCCccHHHHh-cCCCceEEEecccccccccCCCCCCCCCcCcchhCCHHHHHHHHHHHHHHH
Confidence 11 1100000111 1 123589999986 2599999997653 1 368999999999999999999999999998
Q ss_pred HH
Q 003998 232 KA 233 (780)
Q Consensus 232 ~~ 233 (780)
.+
T Consensus 311 y~ 312 (314)
T 3gux_A 311 YN 312 (314)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 10
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=99.95 E-value=6.4e-27 Score=263.07 Aligned_cols=203 Identities=20% Similarity=0.218 Sum_probs=156.8
Q ss_pred eeeeeeeEEEEEeCCCC-CCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCc
Q 003998 31 GYRNHTNIVMRISSTDS-QDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFM 109 (780)
Q Consensus 31 ~y~~~~NVi~~i~G~~~-~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl 109 (780)
...+..|||++++|+++ .++++.|+++||+|||+.+|||.||++|||+|||++|.|++. +++|+|+|++|++||.|+
T Consensus 199 ~~~~~~Nvi~~~~g~~~~~~~~~~v~~~aH~D~v~~g~Ga~D~~~G~a~~le~~~~l~~~--~~~~~i~~~~~~~EE~g~ 276 (421)
T 2ek8_A 199 KTLTSHNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELARVMSKL--KTDTELRFITFGAEENGL 276 (421)
T ss_dssp EEEEEEEEEEEECCCSSTTCCCCEEEEEEECCCCTTCCCTTTTHHHHHHHHHHHHHHTTS--CCSSEEEEEEESSSTTTS
T ss_pred ccccccceEEEecCcccCCCCCCEEEEecccccCCCCCCCCCCcHhHHHHHHHHHHHhcc--CCCceEEEEEECCccccc
Confidence 34568999999999743 236789999999999999999999999999999999999974 678999999999999999
Q ss_pred cchHHHHHhcC--cccceeEEEEeccCCCCCc-ceEEecCCC-CchhhHhhhhccCccccccccccCCCCCCCCchHHHh
Q 003998 110 LGAHGFMKAHK--WRDSVGAVINVEASGTGGL-DLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFS 185 (780)
Q Consensus 110 ~GS~~fv~~h~--~~~~i~a~INlD~~G~gg~-~~lf~~gp~-~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~~~F~ 185 (780)
.||+.|+++++ +.++++++||+|++|.++. ......+.. +.+...+.+....+.+.. . .....++|||.+|.
T Consensus 277 ~Gs~~~~~~~~~~~~~~~~~~in~D~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~--~~~~~~~SD~~~F~ 352 (421)
T 2ek8_A 277 IGSKKYAASLSEDEIKRTIGMFQLDMVGSKDAGDLIMYTIDGKKNRVTDLGAAASSRLSGV--L--PYGQEGRSDHESFH 352 (421)
T ss_dssp HHHHHHHTTCCHHHHHHEEEEEEECSCCBTTSCEEEEEETTSCCCHHHHHHHHHHHHHTSC--C--CEEECCSSTHHHHH
T ss_pred hhHHHHHHhCccchhhcEEEEEEecccCCCCCcceEEecCCCccccchhhHHHHHHhcCCC--C--CCCCCCCCccHHHH
Confidence 99999999874 4578999999999998776 333333322 222221111111111111 0 01123579999998
Q ss_pred hcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcCcccc
Q 003998 186 QDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQ 241 (780)
Q Consensus 186 ~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a~~l~ 241 (780)
+ .|||++.+.......+|||++||++++|++.++++++.+..++..+++.+.++
T Consensus 353 ~--~GIP~~~~~~~~~~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~~~~p 406 (421)
T 2ek8_A 353 A--LGIPAALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARPGELV 406 (421)
T ss_dssp T--TTCCEEEEEEESCCTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred H--CCCCEEEEECCcCCCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 5 79999987644444689999999999999999999999999999999987654
No 11
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=99.94 E-value=1.1e-26 Score=247.93 Aligned_cols=196 Identities=18% Similarity=0.255 Sum_probs=153.3
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchH
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAH 113 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~ 113 (780)
+..||+++++|++ +++.|+++||+|+++.++||.||++|+|++||++|.|++.+++++++|+|+|+++||.|+.||+
T Consensus 63 ~~~nvi~~~~g~~---~~~~i~l~aH~D~v~~g~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~Gs~ 139 (284)
T 1tkj_A 63 TGYNLIANWPGGD---PNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139 (284)
T ss_dssp EEEEEEEECSCSE---EEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHH
T ss_pred CceeEEEEEeCCC---CCCEEEEEeecCCCCCCCCCccChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCCcCHH
Confidence 4679999999863 3578999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHhcCc--ccceeEEEEeccCCCCCcceEEecCCCCchhhHhhhh---ccCccccccccccCCCCCCCCchHHHhhcC
Q 003998 114 GFMKAHKW--RDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQS---AIYPMAHSAAQDVFPVIPGDTDYRIFSQDY 188 (780)
Q Consensus 114 ~fv~~h~~--~~~i~a~INlD~~G~gg~~~lf~~gp~~~l~~~y~~~---~~~P~~~~~~~~~f~~ips~TD~~~F~~~~ 188 (780)
.|+++++. .++++++||+|+.|.++..+.+..+ ++.+.+.+.+. ...|. +.......+|||.+|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~D~~g~~~~~~~~~~~-~~~l~~~~~~~~~~~gi~~------~~~~~~~~~sD~~~f~~-- 210 (284)
T 1tkj_A 140 FYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYDD-DPVIEKTFKNYFAGLNVPT------EIETEGDGRSDHAPFKN-- 210 (284)
T ss_dssp HHHHHSCHHHHTTEEEEEEECCCCCSSCCCEECCS-SHHHHHHHHHHHHHHTCCC------EECCSSTTCSTHHHHHH--
T ss_pred HHHhhCccchhhcEEEEEEecCCCCCCCCeEEecC-CHHHHHHHHHHHHHcCCCc------ccCCCCCCCCchHHHHH--
Confidence 99998763 4789999999999987654444332 23333333221 11121 11111235799999985
Q ss_pred CCCcEEEEEEec-------------------CCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcCcccc
Q 003998 189 GDIPGLDIIFLI-------------------GGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQ 241 (780)
Q Consensus 189 ~GIPgld~a~~~-------------------~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a~~l~ 241 (780)
.|||++.+.... ...+|||+.||++++|++.+++.++.+..+++.|++++.++
T Consensus 211 ~Gip~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~~id~~~l~~~~~~~~~~~~~la~~~~~P 282 (284)
T 1tkj_A 211 VGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSSGTGEP 282 (284)
T ss_dssp TTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCEEEeecCcccccccchhhccccccccCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 799999987641 13589999999999999999999999999999999987654
No 12
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=99.94 E-value=1.4e-26 Score=252.28 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=143.6
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC-------CCCCCchhHHHHHHHHHHHHHhc--------CCCCCCC
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS-------PGAGDCGSCVASMLELARLTIDS--------GWIPPRP 96 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s-------pGA~Dn~sGvA~mLElaR~L~~~--------~~~p~r~ 96 (780)
+.+..||||+++|+ +++.|+++||+||++.+ +||+||++|||+|||+||.|++. +++|+++
T Consensus 85 ~~~~~Nvi~~~~g~----~~~~i~l~aH~Dsv~~~~~~~~~~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~ 160 (329)
T 2afw_A 85 YRSFSNIISTLNPT----AKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLS 160 (329)
T ss_dssp SEEEEEEEEESSTT----SSEEEEEEEECCCCCCCCBTTBCCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEE
T ss_pred CceEeEEEEEECCC----CCcEEEEEEeccCCCcCcccCcCCCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCcc
Confidence 45789999999985 35789999999998865 89999999999999999999875 4689999
Q ss_pred EEEEEeCcccC--------CccchHHHHHhcC------------cccceeEEEEeccCCCCCcceE--EecCCCCchhhH
Q 003998 97 IIFLFNGAEEL--------FMLGAHGFMKAHK------------WRDSVGAVINVEASGTGGLDLV--CQSGPSSWPSSV 154 (780)
Q Consensus 97 IiFlf~~aEE~--------gl~GS~~fv~~h~------------~~~~i~a~INlD~~G~gg~~~l--f~~gp~~~l~~~ 154 (780)
|+|+++++||. |+.||++|++++. ..++++++||+|++|.++..+. +..+. .+.+.
T Consensus 161 i~~~~~~~EE~~~~~~~~~gl~Gs~~~~~~~~~~~~p~~~~~~~~~~~i~~~inlD~iG~~~~~~~~~~~~~~--~~~~~ 238 (329)
T 2afw_A 161 LQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSA--RWFER 238 (329)
T ss_dssp EEEEEESCCSCSSSCCSSSSCHHHHHHHHHHHTSBSSTTCSSCBTTTTEEEEEEECSCCSSSCCBCCCCGGGH--HHHHH
T ss_pred EEEEEecCcccccccCCCccchhHHHHHHHHHhCCCcccccccccccceEEEEEeccCCCCCCceeeeccCcc--hHHHH
Confidence 99999999998 9999999998751 2467999999999998776432 11111 11111
Q ss_pred ---hhhhccCc-c--ccccccccCC--C--CCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHH
Q 003998 155 ---YAQSAIYP-M--AHSAAQDVFP--V--IPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARG 224 (780)
Q Consensus 155 ---y~~~~~~P-~--~~~~~~~~f~--~--ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g 224 (780)
..+..... . ........|. . ....|||.+|.+ .|||++++........|||.+||++++|++.+++++
T Consensus 239 l~~~~~~~~~~g~~~~~~~~~~~f~~~~~~g~~~sDh~~F~~--~GiP~~~~~~~~~~~~yHt~~Dt~~~ld~~~l~~~~ 316 (329)
T 2afw_A 239 LQAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLR--RGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLN 316 (329)
T ss_dssp HHHHHHHHHHTTCSSSCCSTTCSBCSCCCCSCCCSTTHHHHT--TTCCEEEECCSSCCTTTTSTTCSSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCCcccccccccccCCCCCCCCHhHHH--CCCCEEEEEcCCCCCCCCCCCCchhhCCHHHHHHHH
Confidence 11111000 0 0000011121 1 123599999986 699999998766667999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003998 225 DNLFNVLKAF 234 (780)
Q Consensus 225 ~~~l~l~~~l 234 (780)
+.+..++.+.
T Consensus 317 ~~~~~~v~ey 326 (329)
T 2afw_A 317 KILQVFVLEY 326 (329)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888777543
No 13
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=99.93 E-value=3.1e-25 Score=238.31 Aligned_cols=203 Identities=19% Similarity=0.212 Sum_probs=150.0
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCC--------CCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcc
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPL--------SSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAE 105 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~--------~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aE 105 (780)
+..||+++++|++ .+++.|+++||+|+++ .++||.||++|||++||++|.|++.+++++++|+|+++++|
T Consensus 74 ~~~nvi~~~~g~~--~~~~~v~l~aH~D~v~~~~~~~~~~~~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~E 151 (299)
T 1rtq_A 74 NQKSVVMTITGSE--APDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151 (299)
T ss_dssp EEEEEEEEECCSS--EEEEEEEEEEECCCCSSTTCCTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCG
T ss_pred CCceEEEEEECCC--CCCCEEEEEeccccCCCcCcCCCcccCCCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCc
Confidence 4689999999864 1357899999999986 36999999999999999999999988889999999999999
Q ss_pred cCCccchHHHHHhcCc-ccceeEEEEeccCCCCC--cceEEecCCC-CchhhHhhhhccCccccccccccCCCCCCCCch
Q 003998 106 ELFMLGAHGFMKAHKW-RDSVGAVINVEASGTGG--LDLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDY 181 (780)
Q Consensus 106 E~gl~GS~~fv~~h~~-~~~i~a~INlD~~G~gg--~~~lf~~gp~-~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~ 181 (780)
|.|+.||+.|+++++. .+++.++||+|+.|..| +.+.+..... +.+.+...+.+. .+...+..+.......+|||
T Consensus 152 E~g~~Gs~~~~~~~~~~~~~~~~~i~~D~~g~~g~~~~i~~~~~~~~~~l~~~l~~~a~-~~~~~i~~~~~~~~~~~sD~ 230 (299)
T 1rtq_A 152 EVGLRGSQDLANQYKSEGKNVVSALQLDMTNYKGSAQDVVFITDYTDSNFTQYLTQLMD-EYLPSLTYGFDTCGYACSDH 230 (299)
T ss_dssp GGTSHHHHHHHHHHHHTTCEEEEEEECSCCSCCCSSSSEEEECTTSCHHHHHHHHHHHH-HHCTTCCEEEECCSSCCSTH
T ss_pred cCCchhHHHHHHhhhhccccEEEEEEecCCCCCCCCcceEEEeCCCCchHHHHHHHHHH-HhCccCCcccCCCCCCCCcH
Confidence 9999999999998743 46899999999998643 3344443222 222221111110 00000000000111257999
Q ss_pred HHHhhcCCCCcEEEEEEe---cCCCCCCCcCCCcCCCCH--HHHHHHHHHHHHHHHHHhcCcccc
Q 003998 182 RIFSQDYGDIPGLDIIFL---IGGYYYHTSHDTVDRLLP--GSVQARGDNLFNVLKAFSNSSKLQ 241 (780)
Q Consensus 182 ~~F~~~~~GIPgld~a~~---~~~~~YHT~~Dt~d~id~--~~lq~~g~~~l~l~~~la~a~~l~ 241 (780)
.+|.+ .|||++.+... ....+|||+.||++++|+ ..++++++.+.+++.+|++++.+.
T Consensus 231 ~~f~~--~GiP~~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~l~~~~~~~La~~~~~~ 293 (299)
T 1rtq_A 231 ASWHN--AGYPAAMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLAYAIEMGSATGDT 293 (299)
T ss_dssp HHHHH--TTCCEECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHH--CCCCEEEecccccccCCCCCCCccccccccCccHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 99986 79999866421 123589999999999998 588999999999999999987654
No 14
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=99.89 E-value=3.2e-22 Score=218.86 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=149.5
Q ss_pred cccceeEEEEEEEeeeeeEEeeeCCceEeeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHH
Q 003998 2 RLVIAKIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLE 81 (780)
Q Consensus 2 ~~~~~~~ev~~q~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLE 81 (780)
++..|++.||.+...|.. .|.+. .++|+. ++.|+++||+||.. +|+||+||+|+++|
T Consensus 150 ~~g~y~V~IdS~l~~G~l-----------~y~e~-----~ipG~t----~~~IllsaH~cHP~---~ANDNaSG~a~lle 206 (435)
T 3k9t_A 150 CDDDYEVVIDSSLEDGSL-----------TYGEY-----YIRGEL----EEEILLTTYTCHPS---MCNDNLSGVALITF 206 (435)
T ss_dssp CSSEEEEEEEEEEESCEE-----------EEEEE-----EECCSS----SCEEEEEEECCCCS---CTTTTHHHHHHHHH
T ss_pred CCCcEEEEEeeeecCCce-----------EEEEE-----EecCCC----CCEEEEEEEcCCCC---CCCccchHHHHHHH
Confidence 345688899988877663 23332 268853 47899999999954 79999999999999
Q ss_pred HHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCc-ccceeEEEEeccCCCCCcceEEecCCC-CchhhHhhh-h
Q 003998 82 LARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQ-S 158 (780)
Q Consensus 82 laR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~-~~~i~a~INlD~~G~gg~~~lf~~gp~-~~l~~~y~~-~ 158 (780)
+||+|++. +++++++|+|++ |.+||..|+++|+. .+++++.||+||+|.++... +..++. +.+.+...+ .
T Consensus 207 Lar~l~~~--~~~~t~rFvf~p----g~iGS~~yl~~~~~~l~~i~a~lnLDmVGd~~~~~-y~~sr~g~~~~d~~~~~v 279 (435)
T 3k9t_A 207 IAKALSKL--KTKYSYRFLFAP----ETIGSITWLSRNEDKLKNIKMGLVATCVGDAGIKN-YKRTKFGDAEIDKIVEKV 279 (435)
T ss_dssp HHHHHTTS--CCSSEEEEEEEC----TTHHHHHHHHHCGGGGGGEEEEEECCSCCSSSCEE-EECCTTSSSHHHHHHHHH
T ss_pred HHHHHhcC--CCCceEEEEEcC----ccHHHHHHHHhChHhhhceEEEEEEEEecCCCCce-eecCCCCChHHHHHHHHH
Confidence 99999864 589999999998 79999999998853 46999999999999987543 333333 333322211 1
Q ss_pred ccCccccccccccCCCCCCCCchHHHhhcCCC--CcEEEEEEecCC-CCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 003998 159 AIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGD--IPGLDIIFLIGG-YYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFS 235 (780)
Q Consensus 159 ~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~G--IPgld~a~~~~~-~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la 235 (780)
..+ .. .........|.+|||++|.. .| ||...+.-...+ ..|||+.||+++|+++.|+...+.+...++.|-
T Consensus 280 l~~-~~--~~~~~~~f~~~GSDh~qF~s--pG~dIPv~~~~r~~~~~peYHTs~Dtld~ISpe~L~~s~~iv~~~i~~Le 354 (435)
T 3k9t_A 280 LMH-CG--SEYYVADFFPWGSDERQFSS--PGINLSVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIE 354 (435)
T ss_dssp HHH-SS--SCEEEECCCSCSSTHHHHTS--TTTCCCEEEEESSCTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-cC--CCCceecCCCCCCcchhHhh--CCCCCCEEEEecCCCCCcccCCCcCChhhCCHHHHHHHHHHHHHHHHHhh
Confidence 111 00 00011123457799999985 68 999988753332 379999999999999999999999999999996
Q ss_pred cC
Q 003998 236 NS 237 (780)
Q Consensus 236 ~a 237 (780)
+.
T Consensus 355 ~n 356 (435)
T 3k9t_A 355 NN 356 (435)
T ss_dssp HC
T ss_pred cc
Confidence 54
No 15
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}
Probab=99.47 E-value=4.2e-13 Score=141.60 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=128.1
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..|+++++ |+ +.+.|++.+|+|++|.+ +|+.||.+|+|++|+++|.|++.+.+
T Consensus 50 ~~~nv~a~~-g~----~~~~i~l~~H~D~vp~~~~~~w~~~pf~~~~~~g~~~grG~~D~k~g~a~~l~a~~~l~~~~~~ 124 (269)
T 4h2k_A 50 DTLNLWAKH-GT----SEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPN 124 (269)
T ss_dssp TBCEEEEEE-CS----SSCEEEEEEECCBCCCCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEe-CC----CCCEEEEEeeecccCCCCcccccCCCCCeEEECCEEEeCCcccChHHHHHHHHHHHHHHHhCCC
Confidence 467999998 54 24689999999999853 49999999999999999999987767
Q ss_pred CCCCEEEEEeCcccCCcc-chHHHHHhcC-cccceeEEEEeccCCCC--CcceEE-ecCC-----CCchhhHhhhhc---
Q 003998 93 PPRPIIFLFNGAEELFML-GAHGFMKAHK-WRDSVGAVINVEASGTG--GLDLVC-QSGP-----SSWPSSVYAQSA--- 159 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~-GS~~fv~~h~-~~~~i~a~INlD~~G~g--g~~~lf-~~gp-----~~~l~~~y~~~~--- 159 (780)
++++|+|+|+.+||.|.. ||+.++++.. ...+..++|+.|..+.. +..+.. +.|. +..+.+...+.+
T Consensus 125 ~~~~i~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~~d~~i~~Ept~~~~~~~~i~~g~~G~G~~~~~~~l~~~l~~aa~~~ 204 (269)
T 4h2k_A 125 HKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGGGFLTKPGKLLDSITSAIEET 204 (269)
T ss_dssp CSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTCCCCEEEECCCCBSSSTTSEEECSCTTCC------HHHHHHHHHHHHH
T ss_pred CCccEEEEEEeccccCcccCHHHHHHHHHhcCCCCCEEEEECCCCCCcCCceeEEecccccccCCCcHHHHHHHHHHHHH
Confidence 889999999999999985 9999987542 23567899999976431 111110 1111 112333222211
Q ss_pred -cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 160 -IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 160 -~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
..+.. . ....++||.+.+.+ .|+|.+.+.... + .+||+.+ +++++.+++..+.+.++++.+..
T Consensus 205 ~gi~~~------~-~~~gggtDa~~~~~--~g~p~~~~~~~~-~-~~Hs~~E---~v~~~d~~~~~~ll~~~l~~l~~ 268 (269)
T 4h2k_A 205 IGITPK------A-ETGGGTSDGRFIAL--MGAEVVEFGPLN-S-TIHKVNE---CVSVEDLGKCGEIYHKMLVNLLD 268 (269)
T ss_dssp HSCCCE------E-ECC--CHHHHHHHT--TTCEEEECCSBC-T-TTTSTTC---EEEHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCCCE------E-ecCCCCchHHHHHh--hCCCEEEEEeCC-C-CCcCCcc---cccHHHHHHHHHHHHHHHHHHhh
Confidence 11110 0 12246799999874 799999876433 3 4599985 67899999999999999887743
No 16
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=99.46 E-value=4.8e-13 Score=141.00 Aligned_cols=188 Identities=18% Similarity=0.115 Sum_probs=129.8
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..|+++++ |+ +.+.|++.+|+|+++.+ +|+.||.+|+|++|+++|.|++.+.+
T Consensus 50 ~~~nv~a~~-g~----~~~~i~l~~H~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~ 124 (268)
T 3t68_A 50 DTTNFWARR-GT----QSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPD 124 (268)
T ss_dssp TEEC-CEEE-CS----SSCEEEEEEECCBCCCCCGGGCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTT
T ss_pred CccEEEEEe-CC----CCCeEEEEccccccCCCCcccCCCCCCccEEECCEEEecCcccchHHHHHHHHHHHHHHHhCCC
Confidence 457999998 64 24689999999999753 59999999999999999999887777
Q ss_pred CCCCEEEEEeCcccCCc-cchHHHHHhcC-cccceeEEEEeccCCCC--CcceEE-ecC-----CCCchhhHhhhhccCc
Q 003998 93 PPRPIIFLFNGAEELFM-LGAHGFMKAHK-WRDSVGAVINVEASGTG--GLDLVC-QSG-----PSSWPSSVYAQSAIYP 162 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl-~GS~~fv~~h~-~~~~i~a~INlD~~G~g--g~~~lf-~~g-----p~~~l~~~y~~~~~~P 162 (780)
++++|+|+|+.+||.|. .||+.++++.. ...+..++|++|..+.. +..+.. +.| +++.+.+...+.+..-
T Consensus 125 ~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~~d~~i~~ept~~~~~~~~i~~g~~G~p~~~~~~~l~~~l~~a~~~~ 204 (268)
T 3t68_A 125 HQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRGGGFLTDTGELLAAVVAAVEEV 204 (268)
T ss_dssp CSSEEEEEEESCTTSSSCCHHHHHHHHHHHTTCCCCEEEECSCCBSSSTTSEEEECCGGGGTSCCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEeCCccCcccCHHHHHHHHHhcCCCCCEEEEeCCCCCccCCceeEEecCCCcccCCchHHHHHHHHHHHHH
Confidence 88999999999999998 49999998542 23567899999976432 111111 111 1122333332221110
Q ss_pred cccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 163 MAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 163 ~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
.+... + .....++||+..|.+ .|+|++.+... + ..+||+.+ .++.+.+++..+.+.++++.|.+
T Consensus 205 ~gi~~-~--~~~sgggtD~~~~~~--~g~p~~~~~~~-~-~~~Hs~~E---~v~~~d~~~~~~vl~~~l~~l~~ 268 (268)
T 3t68_A 205 NHQAP-A--LLTTGGTSDGRFIAQ--MGAQVVELGPV-N-ATIHKVNE---CVRIADLEKLTDMYQKTLNHLLG 268 (268)
T ss_dssp HSSCC-E--EESSCCCHHHHHHHH--HTCEEEECCSB-C-TTTTSTTC---EEEHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCc-E--EecCccccHHHHHHh--cCCCEEEEeeC-C-CCCCCccc---cccHHHHHHHHHHHHHHHHHHhC
Confidence 00000 0 011236799999975 69999876532 2 35599985 67788999999999999988754
No 17
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=99.24 E-value=3.3e-11 Score=133.03 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=101.1
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCC----------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGG---------- 138 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg---------- 138 (780)
|.||.+|+|++|+++|.|++.+ ++++|+|+|+++||.|+.|++.+.... +...+|++|..+.++
T Consensus 182 ~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~G~~G~~~~~~~~----~~d~~i~~d~~~~~~~~g~~~~~~~ 255 (373)
T 1vhe_A 182 AWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGLRGAKTAAHTI----QPDIAFGVDVGIAGDTPGISEKEAQ 255 (373)
T ss_dssp THHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTSHHHHHHHHHH----CCSEEEEEEEEECCCSTTCCTTTCC
T ss_pred cCccHHHHHHHHHHHHHHhhcC--CCceEEEEEECCcccChhhHHHHhccc----CCCEEEEEeccccCCCCCCcccccc
Confidence 8999999999999999998763 679999999999999999999986522 346788888765432
Q ss_pred ------cceEE-ecC--CCCchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCC
Q 003998 139 ------LDLVC-QSG--PSSWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 206 (780)
Q Consensus 139 ------~~~lf-~~g--p~~~l~~~y~~~~---~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YH 206 (780)
..+.. ..+ .++.+.+...+.+ ..|... +. ..+.+||...|.....|+|.+++... . ..+|
T Consensus 256 ~~lg~G~~i~~~~~~~~~~~~l~~~l~~~a~~~gi~~~~----~~--~~~ggtDa~~~~~~~~GiPtv~lg~~-~-~~~H 327 (373)
T 1vhe_A 256 SKMGKGPQIIVYDASMVSHKGLRDAVVATAEEAGIPYQF----DA--IAGGGTDSGAIHLTANGVPALSITIA-T-RYIH 327 (373)
T ss_dssp CCTTSCCEEEEEETTEECCHHHHHHHHHHHHHHTCCCEE----EE--ETTCCCTHHHHTTSTTCCCEEEEEEE-E-BSTT
T ss_pred cccCCCceEEEeCCCCCCCHHHHHHHHHHHHHcCCCeEE----ec--CCCCCccHHHHHHhCCCCcEEEEccc-c-ccCC
Confidence 11111 000 0112222222211 111100 01 12467999999321269999987643 2 3479
Q ss_pred CcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 207 TSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 207 T~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
|+. |+++.+.+++..+.+.++++.+..
T Consensus 328 s~~---E~v~~~dl~~~~~ll~~~l~~l~~ 354 (373)
T 1vhe_A 328 THA---AMLHRDDYENAVKLITEVIKKLDR 354 (373)
T ss_dssp SSC---EEEEHHHHHHHHHHHHHHHHHCCH
T ss_pred Chh---heecHHHHHHHHHHHHHHHHHhcH
Confidence 975 678899999999999999988754
No 18
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A
Probab=99.24 E-value=2.5e-11 Score=131.62 Aligned_cols=147 Identities=18% Similarity=0.062 Sum_probs=98.7
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCC-----------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG----------- 137 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~g----------- 137 (780)
|.||.+|+|++|+++|.|++.+ ++++|.|+|+++||.|..|++.+++. .+...+|++|+.+..
T Consensus 171 a~D~k~g~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~G~~G~~~~~~~----~~~~~~i~~d~~~~~~~p~~~~~lg~ 244 (332)
T 2wyr_A 171 GLDDRFGVVALIEAIKDLVDHE--LEGKVIFAFTVQEEVGLKGAKFLANH----YYPQYAFAIDSFACCSPLTGDVKLGK 244 (332)
T ss_dssp THHHHHHHHHHHHHHHTTTTSC--CSSEEEEEEESCGGGTSHHHHHHTTT----CCCSEEEEECCEECCSGGGTTCCTTS
T ss_pred cCCcHHHHHHHHHHHHHHhhcC--CCceEEEEEECccccCcchHHHHhcc----cCCCEEEEEecccccCCCCCceeeCC
Confidence 6999999999999999998764 67999999999999999999999752 245688999987643
Q ss_pred CcceEEe--cCC-CCchhhHhhhhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCC
Q 003998 138 GLDLVCQ--SGP-SSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDR 214 (780)
Q Consensus 138 g~~~lf~--~gp-~~~l~~~y~~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~ 214 (780)
|..+.+. ..+ ++.+.+...+.+.. .+... +. ...+.+||...|. . |+|.+++... ...+||+. |+
T Consensus 245 G~~i~~~d~~~~~~~~l~~~l~~~~~~-~gi~~-~~--~~~~ggtDa~~~~-~--GiPtv~lg~~--~~~~Hs~~---E~ 312 (332)
T 2wyr_A 245 GPVIRAVDNSAIYSRDLARKVWSIAEK-NGIEI-QI--GVTGGGTDASAFQ-D--RSKTLALSVP--IKYLHSEV---ET 312 (332)
T ss_dssp CCEEEEECSSCBCCHHHHHHHHHHHHH-TTCCC-EE--EECSSCCGGGGGT-T--TSEEEEEECE--EBSCSSTT---CE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHH-cCCCe-EE--ecCCCCchHHHHH-c--CCCEEEEcCC--cCCCCChh---hc
Confidence 2111111 111 12233333221110 01000 00 1234789999996 2 9999987633 23589975 56
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 003998 215 LLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 215 id~~~lq~~g~~~l~l~~~ 233 (780)
++.+.+++..+.+..+++.
T Consensus 313 v~~~dl~~~~~ll~~~~~~ 331 (332)
T 2wyr_A 313 LHLNDLEKLVKLIEALAFE 331 (332)
T ss_dssp EEHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 7788999999988888765
No 19
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A
Probab=99.20 E-value=3e-11 Score=132.24 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=100.0
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCCcc--------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLD-------- 140 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~-------- 140 (780)
|.||.+|+|++|+++|.|++ ++++|+|+|+++||.|+.||+.+... .+...+|++|..+.++..
T Consensus 180 a~D~k~g~a~~l~a~~~l~~----~~~~i~~~~~~~EE~g~~G~~~~~~~----~~~~~~i~~d~~~~~~~p~~~~~~g~ 251 (353)
T 1y0y_A 180 AFDDRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGLRGARTSAFG----IEPDYGFAIDVTIAADIPGTPEHKQV 251 (353)
T ss_dssp THHHHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTSHHHHHHHHH----HCCSEEEEEEEEECCCSTTCCGGGCC
T ss_pred cCccHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccchhHHHHHhhc----cCCCEEEEEecccccCCCCCccccCc
Confidence 69999999999999999875 67899999999999999999998752 234678999976543210
Q ss_pred --------eEE-ecC--CCCchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCC
Q 003998 141 --------LVC-QSG--PSSWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 206 (780)
Q Consensus 141 --------~lf-~~g--p~~~l~~~y~~~~---~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YH 206 (780)
+.+ ..+ .++.+.+..++.+ ..|... +. ..+.+||...|.....|+|.+++... . ..+|
T Consensus 252 ~~lg~G~~i~~~d~~~~~~~~l~~~l~~~a~~~gi~~~~----~~--~~~ggsDa~~~~~~~~GiPtv~lg~~-~-~~~H 323 (353)
T 1y0y_A 252 THLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQL----EI--LLGGGTDAGAIHLTKAGVPTGALSVP-A-RYIH 323 (353)
T ss_dssp CCTTSCEEEEEEETTEECCHHHHHHHHHHHHHTTCCEEE----EE--CSSCCCTHHHHTTSTTCCCEEEEEEE-E-BSCS
T ss_pred cccCCCcEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEE----ee--cCCCCchHHHHHHhCCCCcEEEEccc-c-cccC
Confidence 111 000 1112222222211 111100 01 13467999999421269999998743 2 3589
Q ss_pred CcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 207 TSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 207 T~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
|+. |+++.+.+++..+.+.++++.+..
T Consensus 324 s~~---E~v~~~dl~~~~~ll~~~l~~l~~ 350 (353)
T 1y0y_A 324 SNT---EVVDERDVDATVELMTKALENIHE 350 (353)
T ss_dssp SSC---EEEEHHHHHHHHHHHHHHHHHGGG
T ss_pred CHH---HhcCHHHHHHHHHHHHHHHHhhhh
Confidence 975 667789999999999999888754
No 20
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4
Probab=99.15 E-value=1.1e-10 Score=127.73 Aligned_cols=146 Identities=17% Similarity=0.093 Sum_probs=89.1
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCC-c-------c
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGG-L-------D 140 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg-~-------~ 140 (780)
+.||.+|+|++|+++|.+++.+.+++++|+|+|++.||.|+.|++.+ ..+...+|++|+.+.++ + .
T Consensus 184 ~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~~g~~~~------~~~~~~~i~~D~~~~~~~p~~~~~g~~ 257 (349)
T 2gre_A 184 HLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGYGGNSNI------PEETVEYLAVDMGALGDGQASDEYTVS 257 (349)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC----CCCCCC------CTTEEEEEEECCCCCSCC--CCTTSEE
T ss_pred eccchHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCchhhccc------ccCCCEEEEEecccccCCCCCCCCceE
Confidence 69999999999999999998777788999999999999999999875 24578999999977653 1 1
Q ss_pred eEEe--cCCC-CchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCC
Q 003998 141 LVCQ--SGPS-SWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDR 214 (780)
Q Consensus 141 ~lf~--~gp~-~~l~~~y~~~~---~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~ 214 (780)
+... .++. +.+.+..++.+ ..|+.. +.. ...+||..+|.....|+|.+++.. . ...+|| .|+
T Consensus 258 i~~~~~~~~~~~~l~~~l~~~a~~~gi~~q~----~~~--~ggGsDa~~~~~~~~GiPt~~lg~-~-~~~~Hs----~E~ 325 (349)
T 2gre_A 258 ICAKDSSGPYHYALRKHLVELAKTNHIEYKV----DIY--PYYGSDASAAIRAGFDVKHALIGA-G-IDSSHA----FER 325 (349)
T ss_dssp EEEEETTEECCHHHHHHHHHHHHHHTCCEEE----EEC--SCC--------CCSSSCEEEEEEE-C-CBSTTS----SEE
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHcCCCcEE----ecc--CCCCccHHHHHHhCCCCcEEEecc-C-cccccc----cee
Confidence 1111 1111 23333332211 222211 111 246799988842236999997753 3 335787 577
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 003998 215 LLPGSVQARGDNLFNVLK 232 (780)
Q Consensus 215 id~~~lq~~g~~~l~l~~ 232 (780)
++.+.++...+.+.+++.
T Consensus 326 ~~~~dl~~~~~ll~~~l~ 343 (349)
T 2gre_A 326 THESSIAHTEALVYAYVM 343 (349)
T ss_dssp EEHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 788888888888777765
No 21
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=99.15 E-value=1.4e-10 Score=116.67 Aligned_cols=95 Identities=25% Similarity=0.249 Sum_probs=78.0
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..|++++++|+++ +.+.|++.+|+|+++. ++||.||.+|+|++|+++|.|++.+.+
T Consensus 57 g~~~~i~~~~g~~~--~~~~ill~aH~DtVp~~~~~w~~~pf~~~~~~~g~l~GrGa~D~K~g~a~~l~a~~~l~~~~~~ 134 (198)
T 1q7l_A 57 GYVVTVLTWPGTNP--TLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHR 134 (198)
T ss_dssp TEEEEEEEECCSST--TSCEEEEEEECCBCCCCGGGCSSCTTTCCBCTTSEEECTTTTTTHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEEccCCC--CCCeEEEEeeecccCCCcccCccCCCeeeEccCCEEEeCcchhchHHHHHHHHHHHHHHHcCCC
Confidence 35699999998642 3468999999999863 368899999999999999999998878
Q ss_pred CCCCEEEEEeCcccCC-ccchHHHHHhcCc-ccceeEEEE
Q 003998 93 PPRPIIFLFNGAEELF-MLGAHGFMKAHKW-RDSVGAVIN 130 (780)
Q Consensus 93 p~r~IiFlf~~aEE~g-l~GS~~fv~~h~~-~~~i~a~IN 130 (780)
++++|+|+|+.+||.| +.|++.++++++. ..+...+||
T Consensus 135 ~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~~~~~id 174 (198)
T 1q7l_A 135 FPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALD 174 (198)
T ss_dssp CSSCEEEEEESCGGGTSTTTHHHHTTSHHHHTTCEEEEEE
T ss_pred CCCCEEEEEEcccccCccccHHHHHHhHHhccCCcCEEEe
Confidence 9999999999999997 8999999975432 124556664
No 22
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=99.08 E-value=1.2e-10 Score=126.93 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCC---Ccce----
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG---GLDL---- 141 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~g---g~~~---- 141 (780)
|.||.+|+|++|+++|.++ +++++|+|+++++||.|+.|++.++++. +...+|++|+...+ |+..
T Consensus 165 a~D~k~g~a~~l~a~~~l~----~~~~~i~~~~~~~EE~G~~G~~~~~~~~----~~~~~i~~d~~~~~~~~G~~~h~~~ 236 (340)
T 2fvg_A 165 AFDDRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGLRGSAVVVEQL----KPTCAIVVETTTAGDNPELEERKWA 236 (340)
T ss_dssp CHHHHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC-----CHHHHHHH----CCSEEEEEEEEEECSCSTTCCSSSS
T ss_pred cCccHHHHHHHHHHHHHhh----ccCCcEEEEEEcccccchhhhHHHhhcc----CCCEEEEEecccCCCCCCCccccCC
Confidence 6899999999999999987 4788999999999999999999998732 34578888876432 2110
Q ss_pred -------EEe---cCC--CCchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCC
Q 003998 142 -------VCQ---SGP--SSWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 206 (780)
Q Consensus 142 -------lf~---~gp--~~~l~~~y~~~~---~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YH 206 (780)
+.. .+. ++.+.+..++.+ ..|+.. + -..+.+||...|.....|+|.+.+... .. .+|
T Consensus 237 ~~~G~g~~i~~~~~~~~~~~~l~~~l~~~a~~~gi~~~~----~--~~~~ggtDa~~~~~~~~GiP~v~~g~~-~~-~~H 308 (340)
T 2fvg_A 237 THLGDGPAITFYHRGYVIPKEIFQTIVDTAKNNDIPFQM----K--RRTAGGTDAGRYARTAYGVPAGVISTP-AR-YIH 308 (340)
T ss_dssp CCTTSCCEECSCCSSSCCCHHHHHHHHHHHHHTTCCCEE----C--CCC-------------CCSCEEEEEEE-EE-ESS
T ss_pred cccCCCcEEEEeCCCCCCCHHHHHHHHHHHHHcCCCeEE----E--ecCCCCccHHHHHhhCCCCcEEEeccc-cc-ccC
Confidence 000 000 011111111111 111100 0 023568999998631269999987643 23 389
Q ss_pred CcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 207 TSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 207 T~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
|+. |+++.+.+++..+.+..+++.+..
T Consensus 309 s~~---E~v~~~dl~~~~~ll~~~~~~l~~ 335 (340)
T 2fvg_A 309 SPN---SIIDLNDYENTKKLIKVLVEEGKI 335 (340)
T ss_dssp TTC---EEEEHHHHHHHHHHHHHHHHHCHH
T ss_pred Chh---hcccHHHHHHHHHHHHHHHHhccc
Confidence 986 467789999999999999887754
No 23
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=98.91 E-value=4.8e-09 Score=119.06 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=82.2
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
.||+++++|.. +.+.|++.+|+|+++. +.|+.||.+|+|++|++++.|++.+.+++
T Consensus 83 ~~v~a~~~~~~---~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~grGa~D~K~g~a~~l~a~~~l~~~~~~~~ 159 (479)
T 2zog_A 83 PILLGKLGSDP---QKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIP 159 (479)
T ss_dssp CEEEEEECCCT---TSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CEEEEEecCCC---CCCeEEEEEecCCCCCCccccCcCCCCcceeECCEEEeeccccChHHHHHHHHHHHHHHHhCCCCC
Confidence 79999997642 3478999999999864 36789999999999999999999887888
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcC--cccceeEEEEeccC
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHK--WRDSVGAVINVEAS 134 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~--~~~~i~a~INlD~~ 134 (780)
++|+|+|+.+||.|..|++.++++++ +..++.+++++|..
T Consensus 160 ~~v~~~~~~~EE~g~~Ga~~~~~~~~~~~~~~~d~~i~~e~~ 201 (479)
T 2zog_A 160 VNLRFCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNY 201 (479)
T ss_dssp SEEEEEEESCGGGTCTTHHHHHHHTTTTTTTTCCEEEECCCB
T ss_pred CcEEEEEecccccCCccHHHHHHhhhhhhcccCCEEEEeCCC
Confidence 99999999999999999999998764 33467788888853
No 24
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.86 E-value=7.4e-09 Score=113.23 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=78.3
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 95 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r 95 (780)
..|++++++|++ .+.+.|++.+|+|+++. +.|+.|+.+|+|++|++++.|++.+ +++
T Consensus 52 ~~nv~a~~~g~~--~~~~~i~l~aH~D~vp~~~~w~~~p~~~~~~~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~--~~~ 127 (356)
T 3ct9_A 52 GNNVWCLSPMFD--LKKPTILLNSHIDTVKPVNGWRKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQLCRTS--QNY 127 (356)
T ss_dssp TTEEEEECSSCC--TTSCEEEEEEECCBCCCC-------CCCEECSSEEESTTTTTTHHHHHHHHHHHHHHTTSC--CSS
T ss_pred eeeEEEEEecCC--CCCCeEEEEccccccCCCCCCCCCCCccEEECCEEEecCcccchHHHHHHHHHHHHHHhcC--CCC
Confidence 689999998832 13478999999999864 3578899999999999999999875 889
Q ss_pred CEEEEEeCcccC-CccchHHHHHhcCcccceeEEEEeccC
Q 003998 96 PIIFLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 96 ~IiFlf~~aEE~-gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
+|+|+|+.+||. |+.|++.++++.+ ++...+++|..
T Consensus 128 ~v~~~~~~~EE~~g~~G~~~~~~~~~---~~d~~i~~ep~ 164 (356)
T 3ct9_A 128 NLIYLASCEEEVSGKEGIESVLPGLP---PVSFAIVGEPT 164 (356)
T ss_dssp EEEEEEECCGGGTCTTTHHHHGGGSC---CCSEEEECCSB
T ss_pred CEEEEEEeCcccCCccCHHHHHhhCC---CCCEEEEcCCC
Confidence 999999999999 9999999998653 45577887754
No 25
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=98.85 E-value=6.1e-09 Score=115.19 Aligned_cols=95 Identities=24% Similarity=0.306 Sum_probs=80.5
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-----------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPI 97 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-----------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~I 97 (780)
..||+++++|++ .+.|++.+|+|+++. ++|+.|+..|+|++|+++|.|++.+.+++++|
T Consensus 70 ~~~v~a~~~g~~----~~~i~l~aH~D~vp~~~~~~~~Pf~~~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v 145 (393)
T 1cg2_A 70 GDNIVGKIKGRG----GKNLLLMSHMDTVYLKGILAKAPFRVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTI 145 (393)
T ss_dssp SEEEEEEEECSS----CCCEEEEEECCBSCCTTHHHHSCCEEETTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEE
T ss_pred CCeEEEEECCCC----CceEEEEEecCcCCCCCccccCCeeeeCCEEEcCCcccchHHHHHHHHHHHHHHhcCCCCCCCE
Confidence 359999998753 267999999999974 37899999999999999999998877777899
Q ss_pred EEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 98 IFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 98 iFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
+|+|..+||.|..|++.+++++. .++.+++++|..+
T Consensus 146 ~~~~~~~EE~g~~G~~~~~~~~~--~~~d~~i~~e~~~ 181 (393)
T 1cg2_A 146 TVLFNTDEEKGSFGSRDLIQEEA--KLADYVLSFEPTS 181 (393)
T ss_dssp EEEEESCGGGTTTTTHHHHHHHH--HHCSEEEECCCEE
T ss_pred EEEEEcccccCCccHHHHHHHHh--hcCCEEEEeCCCC
Confidence 99999999999999999998643 3567788888543
No 26
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=115.65 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=83.2
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..||++++.+.. +.+.|++.+|+|+++. +.|+.||.+|+|++|++++.|++.+.++
T Consensus 89 ~~~v~a~~~~~~---~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~ 165 (485)
T 3dlj_A 89 PPVILAELGSDP---TKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDL 165 (485)
T ss_dssp CCEEEEEECCCT---TSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcEEEEEECCCC---CCCEEEEEeeecCCCCCCcccCCCCCCccEEECCEEEecccccCcHHHHHHHHHHHHHHHhCCCC
Confidence 468999996642 3578999999999874 3789999999999999999999988788
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcCc--ccceeEEEEeccC
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHKW--RDSVGAVINVEAS 134 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~~--~~~i~a~INlD~~ 134 (780)
+.+|+|+|..+||.|..|++.+++++.. .+++.+++++|..
T Consensus 166 ~~~v~~~~~~~EE~g~~g~~~~~~~~~~~~~~~~d~~~~~~~~ 208 (485)
T 3dlj_A 166 PVNIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNL 208 (485)
T ss_dssp SSEEEEEEESCGGGTTTTHHHHHHHHTTTTSTTCCEEEECCCB
T ss_pred CccEEEEEEcccccCCccHHHHHHhhhhhcccCCCEEEEcCCC
Confidence 9999999999999999999999997642 3578889999853
No 27
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Probab=98.81 E-value=8.9e-09 Score=117.07 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=80.6
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..||+++++|+++ +.+.|++.+|+|+++. +.|+.||.+|+|++|++++.|++.+.++
T Consensus 92 ~~~v~a~~~g~~~--~~~~i~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~ 169 (481)
T 2pok_A 92 APFVMAHFKSSRP--DAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDL 169 (481)
T ss_dssp SCEEEEEECCSST--TCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSC
T ss_pred CcEEEEEecCCCC--CCCeEEEEEeccCcCCCCccccccCCCCceeeCCeEEccccccCcHHHHHHHHHHHHHHHhcCCC
Confidence 5899999987532 3578999999999763 3678999999999999999999875578
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcCc-ccceeEEEEeccC
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEAS 134 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~~-~~~i~a~INlD~~ 134 (780)
+++|+|+|+.+||.|..|++.++++++. .+++.++|+.|..
T Consensus 170 ~~~v~~~~~~~EE~g~~g~~~~~~~~~~~~~~~d~~i~~~~~ 211 (481)
T 2pok_A 170 PVNISFIMEGAEESASTDLDKYLEKHADKLRGADLLVWEQGT 211 (481)
T ss_dssp SSEEEEEEESCGGGTTTTHHHHHHHHHHHHTTCSEEECSCCB
T ss_pred CCCEEEEEecccccCchhHHHHHHHhHhhccCCCEEEECCCC
Confidence 8999999999999999999999986531 1236678887753
No 28
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}
Probab=98.80 E-value=1.1e-08 Score=113.75 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=73.3
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL----- 107 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~----- 107 (780)
+...||+++++|+++ +.+.|++++|+|+++.+ |+.|+.+|+|++|+++|.|++.+.+++++|.|+|+.+||.
T Consensus 55 d~~gnv~a~~~g~~~--~~~~i~l~aH~D~v~~~-g~~d~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~~~~~ 131 (408)
T 3n5f_A 55 DAAGNLIGRKEGTNP--DATVVLVGSHLDSVYNG-GCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRF 131 (408)
T ss_dssp CTTCCEEEEECCSST--TSCEEEEEEESCCCTTB-CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCTTTTC
T ss_pred cCCCCEEEEecCCCC--CCCEEEEEecCCCCCCC-CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCC
Confidence 345699999998742 35789999999999964 8899999999999999999988778999999999999996
Q ss_pred CccchHHHHHhc
Q 003998 108 FMLGAHGFMKAH 119 (780)
Q Consensus 108 gl~GS~~fv~~h 119 (780)
|+.||+.++.+.
T Consensus 132 g~~Gs~~~~~~~ 143 (408)
T 3n5f_A 132 GMIGSRAMAGTL 143 (408)
T ss_dssp CCHHHHHHHTCC
T ss_pred CCcCHHHHHcCC
Confidence 789999998643
No 29
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}
Probab=98.80 E-value=1.2e-08 Score=114.04 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=81.2
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCC
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGW 91 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~ 91 (780)
....||+++++|.+ +.+.|++.+|+|+++.+ .|+.|+.+|+|++|++++.|++.+.
T Consensus 88 ~~~~~via~~~g~~---~~~~v~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~~~a~~l~a~~~l~~~~~ 164 (433)
T 3pfo_A 88 AGSMQVVATADSDG---KGRSLILQGHIDVVPEGPVDLWSDPPYEAKVRDGWMIGRGAQDMKGGVSAMIFALDAIRTAGY 164 (433)
T ss_dssp GGCEEEEEEECCCC---CSCCEEEEEECCBCCCCCGGGCSSCTTTCCEETTEEECTTTTTTHHHHHHHHHHHHHHHHTTE
T ss_pred CCCcEEEEEEecCC---CCCEEEEEcccCCcCCCCcccCCCCCCCcEEECCEEEecchhhhhHHHHHHHHHHHHHHHcCC
Confidence 45689999999843 35689999999999743 4899999999999999999998876
Q ss_pred CCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 92 IPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 92 ~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
+++++|.|+|..+||.|..|++.++++.. ++.++|+.|..
T Consensus 165 ~~~~~v~~~~~~~EE~g~~G~~~~~~~~~---~~d~~i~~ep~ 204 (433)
T 3pfo_A 165 APDARVHVQTVTEEESTGNGALSTLMRGY---RADACLIPEPT 204 (433)
T ss_dssp EESSCEEEEEESCTTTTCHHHHHHHHTTC---CCSEEEECCCC
T ss_pred CCCccEEEEEEecCccCChhHHHHHhcCC---CCCEEEEeCCC
Confidence 78899999999999999899999987532 56778888844
No 30
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=98.66 E-value=7.2e-08 Score=105.48 Aligned_cols=95 Identities=18% Similarity=0.117 Sum_probs=79.0
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 100 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFl 100 (780)
..|++++++|+ +.+.|++.+|+|+++. +.|+.|+.+|+|++|++++.|++. .+++++|+|+
T Consensus 57 ~~~~~a~~~~~----~~~~v~l~~H~D~vp~~~~~~~~~~~g~~~g~G~~D~K~~~a~~l~a~~~l~~~-~~~~~~v~~~ 131 (369)
T 3tx8_A 57 NNNVLARTNRG----LASRVMLAGHIDTVPIADNLPSRVEDGIMYGCGTVDMKSGLAVYLHTFATLATS-TELKHDLTLI 131 (369)
T ss_dssp TTEEEEECCCC----CSCEEEEEEECCBSCCCSCCSCEECSSEEESSSTTTTHHHHHHHHHHHHHHTSC-TTCCSEEEEE
T ss_pred CCcEEEEecCC----CCCeEEEEcccCccCCCCCCCCeEECCEEEcCCcccchHHHHHHHHHHHHHHhh-cCCCccEEEE
Confidence 46899999875 2468999999999985 378999999999999999999864 4678999999
Q ss_pred EeCcccCCc--cchHHHHHhcCcccceeEEEEeccC
Q 003998 101 FNGAEELFM--LGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 101 f~~aEE~gl--~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
|..+||.|. .|++.++++++..-+....|+.|..
T Consensus 132 ~~~~EE~g~~~~G~~~~~~~~~~~~~~~~~i~~ep~ 167 (369)
T 3tx8_A 132 AYECEEVADHLNGLGHIRDEHPEWLAADLALLGEPT 167 (369)
T ss_dssp EECCCSSCTTSCHHHHHHHHCGGGGCCSEEEECCCC
T ss_pred EEeccccCcccccHHHHHHhcccccCCCEEEEeCCC
Confidence 999999997 7999999887432356677887753
No 31
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}
Probab=98.65 E-value=3e-08 Score=111.34 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=77.5
Q ss_pred eeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCC--------------------------------------------
Q 003998 32 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSP-------------------------------------------- 67 (780)
Q Consensus 32 y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~sp-------------------------------------------- 67 (780)
.++..||+++++|+++ ++.+.|++.+|+|++|..+
T Consensus 77 ~d~~~nv~a~~~g~~~-~~~~~v~l~~H~DtVp~~~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i 155 (434)
T 3ife_A 77 MDDNGYVMATLPANTD-KDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTII 155 (434)
T ss_dssp ECTTSCEEEEECCBSS-SCCCCEEEEEECCBCTTSCCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEE
T ss_pred ECCCcEEEEEeCCCCC-CCCCeEEEEEEcccCCCCCCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEE
Confidence 3456899999998742 2347899999999997411
Q ss_pred ---C----CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 68 ---G----AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 68 ---G----A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
| +.||..|+|++|++++.|++.+..++++|.|+|+.+||.| .|++.+..+ .+ ++.+.+++|.
T Consensus 156 ~grG~t~~~~D~K~gva~~l~a~~~L~~~~~~~~~~i~~if~~~EE~g-~Ga~~~~~~-~~--~~d~~~~~d~ 224 (434)
T 3ife_A 156 TTDGTTLLGADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIG-RGPAHFDVE-AF--GASFAYMMDG 224 (434)
T ss_dssp ECCSSSCCCHHHHHHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGGGT-CTGGGCCHH-HH--CCSEEEECCC
T ss_pred ECCCccchhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECCcccC-hHHHHhhhh-hc--CCCEEEEecC
Confidence 2 4899999999999999999887788999999999999999 898876432 11 4678888884
No 32
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=98.60 E-value=7e-08 Score=105.74 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=76.3
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------CCCC----CCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGA----GDCGSCVASMLELARLTIDSGWIPPRP 96 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------spGA----~Dn~sGvA~mLElaR~L~~~~~~p~r~ 96 (780)
..||+++++|+++ +.+.|++.+|+|+++. +.|+ .||..|+|++|++++.|++.+. ++++
T Consensus 56 ~~nv~a~~~g~~~--~~~~v~l~aH~D~vp~~~~~~p~~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~ 132 (373)
T 3gb0_A 56 AGNLICTLPATKD--GVDTIYFTSHMDTVVPGNGIKPSIKDGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNI-PHGT 132 (373)
T ss_dssp SCCEEEEECCSST--TCCCEEEEEECCBCSSCSSCCCEEETTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred ceeEEEEecCCCC--CCCEEEEEEECcccCCCCCcCcEEECCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCC
Confidence 4799999998632 3568999999999963 2366 4999999999999999998764 7899
Q ss_pred EEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCC
Q 003998 97 IIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT 136 (780)
Q Consensus 97 IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~ 136 (780)
|.|+|+.+||.|..|++.+..+. -+....+++|..+.
T Consensus 133 v~~~~~~~EE~g~~Ga~~~~~~~---~~~~~~~~~~~~~~ 169 (373)
T 3gb0_A 133 IEFIITVGEESGLVGAKALDRER---ITAKYGYALDSDGK 169 (373)
T ss_dssp EEEEEESCGGGTSHHHHHSCGGG---CCCSEEEEEEECSC
T ss_pred EEEEEEeccccCchhhhhhCHHh---cCCCEEEEEcCCCC
Confidence 99999999999999999886432 23456677775443
No 33
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}
Probab=98.59 E-value=4.4e-08 Score=107.41 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=75.6
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------CCCCCCchhHHHHHHHHHHHHHhcCCCC---CCC-
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------SPGAGDCGSCVASMLELARLTIDSGWIP---PRP- 96 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------spGA~Dn~sGvA~mLElaR~L~~~~~~p---~r~- 96 (780)
.|++++++|+.. ++.+.|++.+|+|+++. +.|+.|+.+|+|++|++++.|++.+.++ +++
T Consensus 51 ~~~~~~~~~~~~-~~~~~i~l~aH~D~vp~~~~p~~~~~~~g~~~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~~g~~ 129 (364)
T 2rb7_A 51 HDGIPSVMVLPE-KGRAGLLLMAHIDVVDAEDDLFVPRVENDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDM 129 (364)
T ss_dssp ETTEEEEEECSB-TTEEEEEEEEECCCCCCCGGGGSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCceEEEEEcC-CCCCeEEEECccCcCCCCCCCCccEEECCEEEecccccccHHHHHHHHHHHHHHHhCCCCcccCCCc
Confidence 689999986311 23468999999999974 3679999999999999999998765455 457
Q ss_pred -EEEEEeCcccC-CccchHHHHHhcCcccceeEEEEecc
Q 003998 97 -IIFLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 97 -IiFlf~~aEE~-gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
|+|+|+.+||. |+.|++.++++. +..+.|++|.
T Consensus 130 ~v~~~~~~~EE~~g~~G~~~~~~~~----~~d~~i~~d~ 164 (364)
T 2rb7_A 130 ALGLLITGDEEIGGMNGAAKALPLI----RADYVVALDG 164 (364)
T ss_dssp CEEEEEESCGGGTSTTTHHHHGGGC----EEEEEEECSS
T ss_pred cEEEEEEeccccCchhhHHHHHhcC----CCCEEEEccC
Confidence 99999999997 789999998864 5678888774
No 34
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=98.57 E-value=9.5e-08 Score=108.55 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=71.0
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL----- 107 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~----- 107 (780)
.+..||+++++|++ +++.|++.+|+|+++.. |..|+..|+|++|+++|.|++.+.+++++|+|+|+.+||.
T Consensus 90 d~~gnvia~~~g~~---~~~~i~l~~H~DtVp~~-g~~D~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE~~~~~~ 165 (474)
T 2v8h_A 90 DKIGNMFAVYPGKN---GGKPTATGSHLDTQPEA-GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGARFAR 165 (474)
T ss_dssp BTTCCEEEEECCSS---CCSCEEEEECCCCCSSB-CSSTTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSCSSSSC
T ss_pred ecCceEEEEECCCC---CCCeEEEEEecccCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCCCCC
Confidence 34569999999864 23479999999999964 6789999999999999999988888899999999999998
Q ss_pred CccchHHHHH
Q 003998 108 FMLGAHGFMK 117 (780)
Q Consensus 108 gl~GS~~fv~ 117 (780)
|+.||+.+.+
T Consensus 166 g~~Gs~~l~~ 175 (474)
T 2v8h_A 166 SCTGSSVWSH 175 (474)
T ss_dssp TTHHHHHHTT
T ss_pred CcccHHHHHh
Confidence 7889999976
No 35
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}
Probab=98.55 E-value=1.2e-07 Score=107.71 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=79.9
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 93 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p 93 (780)
..||+++++|+ +.+.|++.+|+|+++. +.|+.||..|+|++|++++.|++.+.++
T Consensus 77 ~~~v~a~~~g~----~~~~i~l~~H~D~vp~~~~w~~~~~Pf~~~~~~g~~~grG~~D~K~~~a~~l~a~~~l~~~~~~~ 152 (472)
T 3pfe_A 77 TPLLFMEIPGQ----IDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPY 152 (472)
T ss_dssp CCEEEEEECCS----EEEEEEEEEECCBCCCCSCCCTTCBTTBCEEETTEEESTTCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CcEEEEEEcCC----CCCeEEEEccccCCCCcCCCCcCCCCCceEEECCEEEEeCcccCcHHHHHHHHHHHHHHHcCCCC
Confidence 46999999883 2468999999997652 2589999999999999999999887666
Q ss_pred CCCEEEEEeCcccCCccchHHHHHhcC-cccceeEEEEeccC
Q 003998 94 PRPIIFLFNGAEELFMLGAHGFMKAHK-WRDSVGAVINVEAS 134 (780)
Q Consensus 94 ~r~IiFlf~~aEE~gl~GS~~fv~~h~-~~~~i~a~INlD~~ 134 (780)
+ +|+|+|..+||.|..|++.++++++ ..+++.+++.+|..
T Consensus 153 ~-~v~~~~~~~EE~g~~g~~~~~~~~~~~~~~~d~~~~~~~~ 193 (472)
T 3pfe_A 153 P-RCILIIEACEESGSYDLPFYIELLKERIGKPSLVICLDSG 193 (472)
T ss_dssp E-EEEEEEESCGGGTSTTHHHHHHHHHHHHCCCSEEEEECCB
T ss_pred C-cEEEEEEeCCCCCChhHHHHHHHhHhhccCCCEEEEeCCC
Confidence 6 9999999999999999999998763 22467889999854
No 36
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=98.55 E-value=2.5e-07 Score=102.18 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=75.3
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------------CCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------------spGA~Dn~sGvA~mLElaR~L~~~~~~ 92 (780)
+..||++++ |+ +.+.|++.+|+|++|. +.|+.|+.+|+|++|++++.|.+.+.+
T Consensus 50 ~~~nv~a~~-g~----~~~~i~l~~H~D~Vp~~~~~~w~~~Pf~~~~~~g~l~grG~~D~k~~~aa~l~a~~~l~~~~~~ 124 (393)
T 1vgy_A 50 NTKNIWLRR-GT----KAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPN 124 (393)
T ss_dssp TBCEEEEEE-CS----SSSEEEEEEECCBCCCCCGGGSSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEEE-CC----CCCEEEEEcccCCcCCCCcccCCCCCCceEEECCEEEecCcccchHHHHHHHHHHHHHHHhcCC
Confidence 467999999 64 2468999999999874 247889999999999999999887777
Q ss_pred CCCCEEEEEeCcccC-CccchHHHHHhcCc-ccceeEEEEecc
Q 003998 93 PPRPIIFLFNGAEEL-FMLGAHGFMKAHKW-RDSVGAVINVEA 133 (780)
Q Consensus 93 p~r~IiFlf~~aEE~-gl~GS~~fv~~h~~-~~~i~a~INlD~ 133 (780)
++++|+|+|..+||. |+.|++.+++.... ..++.+++..|.
T Consensus 125 ~~~~v~~~~~~~EE~~~~~Ga~~~~~~~~~~~~~~d~~i~~e~ 167 (393)
T 1vgy_A 125 HQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEP 167 (393)
T ss_dssp CSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCcEEEEEEeccccCCcCCHHHHHHHHHhcCcCCCEEEEeCC
Confidence 899999999999998 47899988864321 124555665553
No 37
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A
Probab=98.55 E-value=5.8e-08 Score=108.31 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=70.8
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL----- 107 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~----- 107 (780)
+...||+++++|+++ ..+.|++.+|+|+++.+ |..|+..|+|++|++++.|++.+.+++++|+|+|+.+||.
T Consensus 59 ~~~gnv~a~~~g~~~--~~~~i~l~~H~D~Vp~~-g~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~~~~~ 135 (423)
T 1z2l_A 59 DEVGNLYGRLNGTEY--PQEVVLSGSHIDTVVNG-GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPY 135 (423)
T ss_dssp CTTSCEEEEECCSSE--EEEEEEEEEECCCCTTB-CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSC
T ss_pred ecCCcEEEEEcCCCC--CCCEEEEEEecCCCCCC-CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCC
Confidence 344599999998631 23689999999999964 7899999999999999999987778899999999999998
Q ss_pred CccchHHHHH
Q 003998 108 FMLGAHGFMK 117 (780)
Q Consensus 108 gl~GS~~fv~ 117 (780)
|+.||+.+..
T Consensus 136 g~~Gs~~~~~ 145 (423)
T 1z2l_A 136 VFWGSKNIFG 145 (423)
T ss_dssp SCHHHHHHTT
T ss_pred CcccHHHHHc
Confidence 6789999886
No 38
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=98.52 E-value=4.1e-07 Score=98.86 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=91.2
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCCcce----EEe
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDL----VCQ 144 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~~----lf~ 144 (780)
+.||..|+++++|+++.+++.+ ++.++.|+++..||.|+.|++.-.. .. +....|.+|....+...- ...
T Consensus 170 ~~D~r~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~~Ga~~~~~--~i--~~~~~i~~D~~~~~~~~~~~~~~~~ 243 (346)
T 1vho_A 170 ALDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGCLGALTGAY--EI--NPDAAIVMDVTFASEPPFSDHIELG 243 (346)
T ss_dssp THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSHHHHHHTTC--CC--CCSEEEEEEEECCCCTTSCCCCCTT
T ss_pred cCccHHHHHHHHHHHHHhhhcC--CCceEEEEEECCcccchhhHHHHhc--cc--CCCEEEEeecccccCCCCCcccccC
Confidence 4789999999999999998653 5679999999999999999986432 22 224557777765432100 000
Q ss_pred cCC--------CCchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcC
Q 003998 145 SGP--------SSWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVD 213 (780)
Q Consensus 145 ~gp--------~~~l~~~y~~~~---~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d 213 (780)
.++ ++.+.+...+.+ ..|+.. .... -+++||-..+.+...|+|.+++.-. .. ..||+. |
T Consensus 244 ~g~~i~~~~~~~~~l~~~~~~~a~~~gi~~~~----~~~~-g~ggsDa~~~~~~~~gipt~~lg~~-~~-~~Hs~~---E 313 (346)
T 1vho_A 244 KGPVIGLGPVVDRNLVQKIIEIAKKHNVSLQE----EAVG-GRSGTETDFVQLVRNGVRTSLISIP-LK-YMHTPV---E 313 (346)
T ss_dssp SCCEEECSTTSCHHHHHHHHHHHHHTTCCCEE----ESSC-CC----CTTHHHHHTTCEEEEEEEE-CB-STTSTT---E
T ss_pred CCceEEeCCcCCHHHHHHHHHHHHHCCCCEEE----EeCC-CCCCchHHHHHHhCCCCcEEEEehh-hc-ccccHH---H
Confidence 111 112222222111 112110 0010 1267998888421269999987643 33 489874 5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Q 003998 214 RLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 214 ~id~~~lq~~g~~~l~l~~~la~ 236 (780)
+++.+.++...+.+.++++.+..
T Consensus 314 ~~~~~dl~~~~~ll~~~~~~~~~ 336 (346)
T 1vho_A 314 MVDPRDVEELARLLSLVAVELEV 336 (346)
T ss_dssp EECHHHHHHHHHHHHHHHHHCC-
T ss_pred hcCHHHHHHHHHHHHHHHHHhhh
Confidence 67789999999999999887754
No 39
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4
Probab=98.52 E-value=6.5e-07 Score=97.21 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=95.5
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCCcc--------
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLD-------- 140 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~-------- 140 (780)
+.||..|+++++++++.+++.+ ++.++.++++..||.|+.|++...... ...+.|++|+...+...
T Consensus 167 ~~D~k~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~~Ga~~~~~~i----~~~~~i~~D~~~~~~~~~~~~~~~~ 240 (348)
T 1ylo_A 167 AFDDRLSCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGLRGGQTATRAV----SPDVAIVLDTACWAKNFDYGAANHR 240 (348)
T ss_dssp THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEESCCTTSSHHHHHHHHHH----CCSEEEEECCCCCSSTTCCSTTCCC
T ss_pred CcccHHHHHHHHHHHHHhhhcC--CCceEEEEEEcccccchhHHHHhhccc----CCCEEEEEeccccCCCCCCCccccc
Confidence 4789999999999999998653 668999999999999999998755422 12456888886653321
Q ss_pred -------eEEecCCC---CchhhHhhhh---ccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCC
Q 003998 141 -------LVCQSGPS---SWPSSVYAQS---AIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHT 207 (780)
Q Consensus 141 -------~lf~~gp~---~~l~~~y~~~---~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT 207 (780)
+.....+. +.+.+...+. ...|+.. +. ..+++||...+.....|+|.+++.. ... ..||
T Consensus 241 ~~~~G~~i~~~~~~~~~~~~l~~~~~~~a~~~gi~~~~----~~--~~~ggsDa~~~~~~~~gipt~~lg~-~~~-~~Hs 312 (348)
T 1ylo_A 241 QIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQA----DM--FSNGGTDGGAVHLTGTGVPTLVMGP-ATR-HGHC 312 (348)
T ss_dssp CTTSCCEEEEECSSCBCCHHHHHHHHHHHHHHTCCCEE----EE--CSSCCCHHHHHHTSTTCCCEEEEEC-CCB-SCSS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHcCCCeEE----ee--cCCCcchHHHHHHhcCCCCEEEECc-ccC-cCCC
Confidence 11110110 1112111111 1112111 01 1357899998853226999997753 333 4898
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 003998 208 SHDTVDRLLPGSVQARGDNLFNVLKAFS 235 (780)
Q Consensus 208 ~~Dt~d~id~~~lq~~g~~~l~l~~~la 235 (780)
+. |+++.+.++...+.+.++++.+.
T Consensus 313 ~~---E~~~~~d~~~~~~ll~~~~~~l~ 337 (348)
T 1ylo_A 313 AA---SIADCRDILQMEQLLSALIQRLT 337 (348)
T ss_dssp SC---EEEEHHHHHHHHHHHHHHHHTCC
T ss_pred cc---eEeeHHHHHHHHHHHHHHHHHhh
Confidence 74 56778889998898888887664
No 40
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=98.52 E-value=2e-07 Score=106.52 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=75.9
Q ss_pred eeeEEEEEe-CCCCCCCCCeEEEeeeccCCCCC-------------------CCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 003998 35 HTNIVMRIS-STDSQDTDPSVLMNGHFDGPLSS-------------------PGAGDCGSCVASMLELARLTIDSGWIPP 94 (780)
Q Consensus 35 ~~NVi~~i~-G~~~~~~~~~Vll~aH~DS~~~s-------------------pGA~Dn~sGvA~mLElaR~L~~~~~~p~ 94 (780)
..|++++++ |+ +++.|++.+|+|+++.+ +|+.||.+|+|++|+++|.|++.+.+++
T Consensus 86 ~~~~~~~~~~g~----~~~~i~l~~H~D~vp~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~ 161 (492)
T 3khx_A 86 VDHIAGRIEAGK----GNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWK 161 (492)
T ss_dssp ETTTEEEEEEEC----SSCEEEEEEECCCCCCCSCCSSCTTSCEECSSEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCS
T ss_pred eCCEEEEEEeCC----CCCEEEEEEeccCCCCCCCcccCCCceEEECCEEEecCCccCcHHHHHHHHHHHHHHHcCCCCC
Confidence 357887776 43 24789999999998742 5899999999999999999999887889
Q ss_pred CCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 95 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 95 r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
++|+|+|..+||.|..|++.++++++. ....++.|.
T Consensus 162 ~~i~~~~~~~EE~g~~g~~~~~~~~~~---~~~~~~~d~ 197 (492)
T 3khx_A 162 KRIHMIIGTDEESDWKCTDRYFKTEEM---PTLGFAPDA 197 (492)
T ss_dssp SEEEEEEECCTTCCCCTTSHHHHHSCC---CSEEECSSC
T ss_pred CCEEEEEECCccCCCcCHHHHHHhCcC---CCEEEecCC
Confidence 999999999999999999999998753 344455553
No 41
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}
Probab=98.50 E-value=1.9e-07 Score=103.29 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=74.4
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC---------------CCCC----CCchhHHHHHHHHHHHHHhcCCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------SPGA----GDCGSCVASMLELARLTIDSGWIPPR 95 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~---------------spGA----~Dn~sGvA~mLElaR~L~~~~~~p~r 95 (780)
..||+++++|+....+.+.|++.+|+|+++. +.|+ .||.+|+|++|++++.|++.+ .+++
T Consensus 74 ~~nvia~~~g~~~~~~~~~i~l~aH~D~vp~g~~~~p~~~~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~-~~~~ 152 (396)
T 3rza_A 74 ANNLVCTMNSTIEEGEVPKLYLTSHMDTVVPAINVKPIVKDDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQ-IPHG 152 (396)
T ss_dssp SCCEEEEECCCCC---CCCEEEEEECCBCSSCSSCCCEECTTSEEECCSSSCCCHHHHHHHHHHHHHHHHHHHHT-CCCC
T ss_pred CceEEEEECCcCCCCCCCeEEEEEECCccCCCCCcceEEecCCEEECCCccccCcccHHHHHHHHHHHHHHHhcC-CCCC
Confidence 5799999998510113578999999999962 3455 499999999999999998876 3678
Q ss_pred CEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 96 PIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 96 ~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
+|.|+|..+||.|..|++.+..+.. +....+++|..+
T Consensus 153 ~v~~~~~~~EE~g~~Ga~~~~~~~~---~~~~~~~~~~~~ 189 (396)
T 3rza_A 153 QIQFVITVGEESGLIGAKELNSELL---DADFGYAIDASA 189 (396)
T ss_dssp CEEEEEESCGGGTSHHHHHCCGGGC---CCSEEEEEEESS
T ss_pred CEEEEEEcccccccHhHhhhchhhc---ccceEEEEecCC
Confidence 9999999999999999998865321 234556667544
No 42
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A
Probab=98.44 E-value=2.3e-07 Score=103.33 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=74.9
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC------C---------------------------------------
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS------P--------------------------------------- 67 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s------p--------------------------------------- 67 (780)
.+..||+++++|+++ .+.+.|++.+|+|+++.. |
T Consensus 53 ~~~~nvia~~~g~~~-~~~~~i~l~aH~D~Vp~~~~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~gd~~l~g 131 (417)
T 1fno_A 53 SEKGTLMATLPANVE-GDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITT 131 (417)
T ss_dssp CTTCCEEEEECCSSC-SCCCCEEEEEECCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEEC
T ss_pred CCCceEEEEECCCCC-CCCCceEEEEeccccCCCCCCCCCceEEecCCCCeecccccccccchhhcchhhhhcCCcEEEc
Confidence 345799999988631 124679999999998642 1
Q ss_pred -CC----CCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 68 -GA----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 68 -GA----~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
|+ .||..|+|++|++++.|++.+ .++++|+|+|+.+||.| .|++.+.++. + +..+.+++|..
T Consensus 132 rGat~l~~D~K~g~a~~l~a~~~l~~~~-~~~~~v~~~~~~~EE~g-~Ga~~~~~~~-~--~~d~~i~~d~~ 198 (417)
T 1fno_A 132 DGKTLLGADDKAGVAEIMTALAVLKGNP-IPHGDIKVAFTPDEEVG-KGAKHFDVEA-F--GAQWAYTVDGG 198 (417)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHHHSSS-CCCCCEEEEEESCGGGT-CTTTTCCHHH-H--CCSEEEECCCC
T ss_pred CCccccccccHHhHHHHHHHHHHHHhCC-CCCCcEEEEEEeccccC-CChhhhchhh-c--CCCEEEEeCCC
Confidence 22 788899999999999999887 78899999999999999 8998776432 2 35567888854
No 43
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=98.43 E-value=6.4e-07 Score=101.24 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=68.0
Q ss_pred eeEEEEEeCCCCCCCCCeEEEeeeccCCCC--------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 003998 36 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 95 (780)
Q Consensus 36 ~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~--------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r 95 (780)
.++++++ |++ .+.|++.+|+|+++. +.|+.||..|+|++|++++.|++.+.++++
T Consensus 69 ~~~~~~~-g~~----~~~i~l~~H~D~vp~~~~w~~~Pf~~~~~~~g~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~ 143 (470)
T 1lfw_A 69 YAGRVNF-GAG----DKRLGIIGHMDVVPAGEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKK 143 (470)
T ss_dssp TEEEEEE-CCC----SSEEEEEEECCBCCCCSCCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred eEEEEEe-CCC----CCeEEEEEeecccCCCCCccCCCcceeEeeCCEEECCCcccChHHHHHHHHHHHHHHHcCCCCCC
Confidence 3566666 532 468999999999763 357799999999999999999988878899
Q ss_pred CEEEEEeCcccCCccchHHHHHhcC
Q 003998 96 PIIFLFNGAEELFMLGAHGFMKAHK 120 (780)
Q Consensus 96 ~IiFlf~~aEE~gl~GS~~fv~~h~ 120 (780)
+|+|+|..+||.|..|++.+++++.
T Consensus 144 ~i~~i~~~~EE~g~~G~~~~~~~~~ 168 (470)
T 1lfw_A 144 KIDFVLGTNEETNWVGIDYYLKHEP 168 (470)
T ss_dssp EEEEEEESCTTTTCHHHHHHHHHSC
T ss_pred CEEEEEecCcccCCccHHHHHHhCc
Confidence 9999999999999999999998754
No 44
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=98.42 E-value=7.4e-07 Score=97.25 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=75.1
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC---------------------CCCCCchhHHHHHHHHHHHHHhcCC
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGW 91 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s---------------------pGA~Dn~sGvA~mLElaR~L~~~~~ 91 (780)
.+..|+++++ |+ +.+.|++.+|+|+++.. .|+.|+..|++++|++++.+.+.+.
T Consensus 46 ~~~~n~~a~~-g~----~~~~i~l~aH~D~vp~~~~~~w~~~pf~~~~~~g~~~g~G~~D~k~g~~~~l~a~~~l~~~~~ 120 (377)
T 3isz_A 46 NDTLNLWAKH-GT----SEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANP 120 (377)
T ss_dssp TTBCEEEEEE-ES----SSCEEEEEEECCBCCCCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCT
T ss_pred CCCceEEEEe-CC----CCCEEEEeccccccCCCCcccCCCCCCCcEEECCEEEeCChhhhhHHHHHHHHHHHHHHHhCC
Confidence 3568999998 64 24689999999998742 4677999999999999999988777
Q ss_pred CCCCCEEEEEeCcccCCc-cchHHHHHhcCc-ccceeEEEEecc
Q 003998 92 IPPRPIIFLFNGAEELFM-LGAHGFMKAHKW-RDSVGAVINVEA 133 (780)
Q Consensus 92 ~p~r~IiFlf~~aEE~gl-~GS~~fv~~h~~-~~~i~a~INlD~ 133 (780)
+++++|+|+|..+||.|. .||+.+++.... ..++.+++..|.
T Consensus 121 ~~~~~v~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~~~~e~ 164 (377)
T 3isz_A 121 NHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEP 164 (377)
T ss_dssp TCSSEEEEEEESCSSSCCSSSHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CCCceEEEEEEcccccCccccHHHHHHHHHhcCCCCCEEEEcCC
Confidence 788999999999999986 699998864321 124555665553
No 45
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}
Probab=98.37 E-value=5e-07 Score=103.13 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=73.9
Q ss_pred eeeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC------------------------CCCC---CchhHHHHHHHHHHH
Q 003998 33 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS------------------------PGAG---DCGSCVASMLELARL 85 (780)
Q Consensus 33 ~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s------------------------pGA~---Dn~sGvA~mLElaR~ 85 (780)
+...||+++++|+...++.+.|++.+|+|+++.. .|+. ||+.|+|++|++++
T Consensus 54 ~~~~nv~a~~~g~~g~~~~~~v~l~aH~D~vp~~~~~~~~~w~~~p~~~~~~~g~l~g~G~~lgaD~k~g~a~~l~~l~- 132 (490)
T 3mru_A 54 DPTGNVFIKKPATPGMENKKGVVLQAHIDMVPQKNEDTDHDFTQDPIQPYIDGEWVTAKGTTLGADNGIGMASCLAVLA- 132 (490)
T ss_dssp CTTCCEEEEECCCTTCTTCCCEEEEEECCBCCCBCTTSCCCTTTCCCCEEEETTEEEETTBCCCHHHHTTHHHHHHHHH-
T ss_pred cCCCeEEEEEcCCCCCCCCCeEEEEeccCCCCCCCCCcccccccCCceEEeeCCeEecCCCccCCCCHHHHHHHHHHHH-
Confidence 3456999999986311245789999999998743 3675 99999999999763
Q ss_pred HHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccC
Q 003998 86 TIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 86 L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~ 134 (780)
....++.+|.|+|..+||.|+.|++.++++. . +....+|+|..
T Consensus 133 ---~~~~~~~~v~~~~~~~EE~g~~Ga~~~~~~~-~--~~~~~~~~d~~ 175 (490)
T 3mru_A 133 ---SKEIKHGPIEVLLTIDEEAGMTGAFGLEAGW-L--KGDILLNTDSE 175 (490)
T ss_dssp ---CSSCCCCSEEEEEESCSSSTTGGGGTCCSSS-C--CSSEEEECCCC
T ss_pred ---hCCCCCCCEEEEEEcccccccHhHHHhhhcc-c--CCCEEEEcCCC
Confidence 2345678999999999999999999988642 2 46788999964
No 46
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=98.36 E-value=9e-07 Score=96.96 Aligned_cols=82 Identities=23% Similarity=0.264 Sum_probs=69.0
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-------------------CCCCCCchhHHHHHHHHHHHHHhcCCCCCC
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 95 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-------------------spGA~Dn~sGvA~mLElaR~L~~~~~~p~r 95 (780)
..|+++ ++|+ +.|++.+|+|+++. +.|+.||..|+|++|+++|. +++
T Consensus 58 ~~~~~a-~~g~------~~i~l~~H~D~vp~~~~w~~~pf~~~~~~g~l~grG~~D~k~g~a~~l~a~~~-------~~~ 123 (369)
T 2f7v_A 58 AVSLYA-VRGT------PKYLFNVHLDTVPDSPHWSADPHVMRRTEDRVIGLGVCDIKGAAAALVAAANA-------GDG 123 (369)
T ss_dssp CEEEEE-EESC------CSEEEEEECCBCCCCSSCSSCTTSCEECSSEEECTTTTTTHHHHHHHHHHHTT-------CCC
T ss_pred ceEEEE-EcCC------CeEEEEeeecccCCCCCCCCCCCCcEEECCEEEecccccccHHHHHHHHHHhc-------CCC
Confidence 479999 9874 35999999999863 25789999999999999976 678
Q ss_pred CEEEEEeCcccC-CccchHHHHHhcCcccceeEEEEecc
Q 003998 96 PIIFLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 96 ~IiFlf~~aEE~-gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
+|+|+|+.+||. |+.|++.++++.. +..++|++|.
T Consensus 124 ~v~~~~~~~EE~~g~~G~~~~~~~~~---~~d~~i~~e~ 159 (369)
T 2f7v_A 124 DAAFLFSSDEEANDPRCIAAFLARGL---PYDAVLVAEP 159 (369)
T ss_dssp CEEEEEESCTTSSSCCHHHHHHTTCC---CCSEEEECCC
T ss_pred CEEEEEEeCcccCCCcCHHHHHhcCC---CCCEEEECCC
Confidence 999999999999 8999999998654 4567777774
No 47
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=98.36 E-value=1.3e-06 Score=97.44 Aligned_cols=91 Identities=20% Similarity=0.298 Sum_probs=72.4
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCC-----------C----CCCchhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSP-----------G----AGDCGSCVASMLELARLTIDSGWIPPRPIIF 99 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~sp-----------G----A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiF 99 (780)
..|++++++|++ + +.|++.+|+|+++... | .+.| .|+|++|++++.|++.+.+++++|+|
T Consensus 71 ~~~l~a~~~~~~---~-~~i~l~aH~D~vp~~~~~~~pf~~~~~g~~~g~G~d-~~~a~~l~a~~~l~~~~~~~~~~v~~ 145 (418)
T 1xmb_A 71 ITGVIGYIGTGE---P-PFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHD-GHVTMLLGAAKILHEHRHHLQGTVVL 145 (418)
T ss_dssp TTEEEEEEESSS---S-CEEEEEEECCCBSCCCCCCSTTCCSSTTCBCCSSHH-HHHHHHHHHHHHHHHTGGGCSSEEEE
T ss_pred CcEEEEEEcCCC---C-CEEEEEecccccCCCCCCCCCcccCCCCceEeCCch-HHHHHHHHHHHHHHhccccCCceEEE
Confidence 579999998853 3 6899999999998431 1 1112 79999999999999877778999999
Q ss_pred EEeCcccCCccchHHHHHhcCcccceeEEEEec
Q 003998 100 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVE 132 (780)
Q Consensus 100 lf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD 132 (780)
+|..+|| |..|++.++++... +++.++++++
T Consensus 146 ~~~~~EE-g~~G~~~~~~~g~~-~~~d~~i~~~ 176 (418)
T 1xmb_A 146 IFQPAEE-GLSGAKKMREEGAL-KNVEAIFGIH 176 (418)
T ss_dssp EEECCTT-TTCHHHHHHHTTTT-TTEEEEEEEE
T ss_pred EEecccc-ccccHHHHHHcCCc-CCCCEEEEEe
Confidence 9999999 99999999986532 2466777654
No 48
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}
Probab=98.30 E-value=1.5e-06 Score=93.71 Aligned_cols=143 Identities=15% Similarity=-0.067 Sum_probs=90.3
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHH---HhcCcccceeEEEEeccCCCC-------C
Q 003998 69 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFM---KAHKWRDSVGAVINVEASGTG-------G 138 (780)
Q Consensus 69 A~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv---~~h~~~~~i~a~INlD~~G~g-------g 138 (780)
+.||.+|+++++|+++.++ + +.++|++.||.|+.|++... .+ .-+..+.|++|....+ |
T Consensus 163 ~~D~k~G~aa~l~al~~l~-------~-i~~~~t~~EEvG~~Ga~~a~~~~~~---~~~~~~~i~~D~~~~~~~~~~~~G 231 (321)
T 3cpx_A 163 YLDDRLGVWTALELAKTLE-------H-GIIAFTCWEEHGGGSVAYLARWIYE---TFHVKQSLICDITWVTEGVEAGKG 231 (321)
T ss_dssp THHHHHHHHHHHHHTTTCC-------S-EEEEEESSTTTTCCSHHHHHHHHHH---HHCCCEEEECCCEECCSSSCTTSC
T ss_pred CCcCHHHHHHHHHHHHHhc-------C-cEEEEECCccCchhcchhhhhcccc---ccCCCEEEEEeCccccCCcccCCC
Confidence 6899999999999998764 2 89999999999999998632 21 1234678889986542 2
Q ss_pred cceEEecCCC--CchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcC
Q 003998 139 LDLVCQSGPS--SWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVD 213 (780)
Q Consensus 139 ~~~lf~~gp~--~~l~~~y~~~~---~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d 213 (780)
..+....++. +.+.+..++.+ ..|+.. +. ..+++||-..+.....|+|.+++.... ...||+..
T Consensus 232 ~~i~~~~~~~~~~~l~~~~~~~a~~~gi~~q~----~~--~~~GGsD~~~~~~s~~Gipt~~lG~~~--~~~Hs~~E--- 300 (321)
T 3cpx_A 232 VAISMRDRMIPRKKYVNRIIELARQTDIPFQL----EV--EGAGASDGRELQLSPYPWDWCFIGAPE--KDAHTPNE--- 300 (321)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHTTSSCCEEE----EE--CSSCCCHHHHHHHSSSCCBCCBEECEE--BSTTSTTC---
T ss_pred cEEEECCCCCCCHHHHHHHHHHHHHcCCCEEE----Ee--CCCCCccHHHHHHhCCCCCEEEEchhh--cccchhhh---
Confidence 2222211221 12222222211 112211 01 246789988884323799999877432 35798665
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 003998 214 RLLPGSVQARGDNLFNVLKA 233 (780)
Q Consensus 214 ~id~~~lq~~g~~~l~l~~~ 233 (780)
.++.+.++...+.+.++++.
T Consensus 301 ~~~~~dl~~~~~ll~~~~~~ 320 (321)
T 3cpx_A 301 CVHKKDIESMVGLYKYLMEK 320 (321)
T ss_dssp EEEHHHHHHHHHHHHHHHHH
T ss_pred heeHHHHHHHHHHHHHHHHh
Confidence 55678888888888887764
No 49
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=98.25 E-value=2.9e-06 Score=94.14 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=71.6
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCCCC-----------CC---CCchhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSP-----------GA---GDCGSCVASMLELARLTIDSGWIPPRPIIFL 100 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~sp-----------GA---~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFl 100 (780)
..||+++++|++ +++.|++.+|+|++|... |. .+...|+|++|++++.|++.+.+++++|+|+
T Consensus 76 ~~nv~a~~~g~~---~~~~i~l~~H~D~vp~~~~~~~Pf~~~~~g~l~g~G~kg~~a~~l~a~~~l~~~~~~~~~~v~~~ 152 (404)
T 1ysj_A 76 KTGVIAEIKGRE---DGPVIAIRADIDALPIQEQTNLPFASKVDGTMHACGHDFHTASIIGTAMLLNQRRAELKGTVRFI 152 (404)
T ss_dssp SSCEEEEEECSS---CCCEEEEEEECCCBSCCCCCCCTTCCSSTTCBCTTSHHHHHHHHHHHHHHHHTCGGGCSSEEEEE
T ss_pred CceEEEEEeCCC---CCCEEEEEEecccccCCCCCCCCcccCCCCceEcCcChHHHHHHHHHHHHHHhccccCCceEEEE
Confidence 459999999863 347899999999998431 21 1123799999999999998766789999999
Q ss_pred EeCcccCCccchHHHHHhcCcccceeEEEEe
Q 003998 101 FNGAEELFMLGAHGFMKAHKWRDSVGAVINV 131 (780)
Q Consensus 101 f~~aEE~gl~GS~~fv~~h~~~~~i~a~INl 131 (780)
|..+||. ..|++.++++.. .+++.+++.+
T Consensus 153 ~~~~EE~-~~G~~~~~~~g~-~~~~d~~i~~ 181 (404)
T 1ysj_A 153 FQPAEEI-AAGARKVLEAGV-LNGVSAIFGM 181 (404)
T ss_dssp EESCTTT-TCHHHHHHHTTT-TTTEEEEEEE
T ss_pred Eeccccc-chhHHHHHhcCC-CcCCCEEEEE
Confidence 9999999 789999998532 3345666665
No 50
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}
Probab=98.23 E-value=1.5e-06 Score=98.94 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=73.2
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC------------------------CCCC---CchhHHHHHHHHHHHH
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS------------------------PGAG---DCGSCVASMLELARLT 86 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s------------------------pGA~---Dn~sGvA~mLElaR~L 86 (780)
...|++++++|+...++.+.|++.+|+|+++.. .|+. ||..|+|++|+++|.
T Consensus 52 ~~~nv~a~~~g~~g~~~~~~i~l~aH~D~vp~~~~~~~~~w~~~p~~~~~~dg~l~g~G~~lgaD~k~g~a~~l~a~~~- 130 (487)
T 2qyv_A 52 EVGNVLIRKPATVGMENRKPVVLQAHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGTTLGADNGIGMASALAVLES- 130 (487)
T ss_dssp TTCCEEEEECCCTTCTTBCCEEEEEESCBCCC----------CCCCCEEECSSEEEETTBCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEEeCCCCCCCCCCeEEEEccCCccCCCCCCCccccccCCeeEEeeCCEEEeCCCCcCCcCHHHHHHHHHHHHh-
Confidence 457999999875210134679999999998753 2665 999999999999973
Q ss_pred HhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCC
Q 003998 87 IDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 135 (780)
Q Consensus 87 ~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G 135 (780)
.+ .++++|.|+|..+||.|..|++.++++. . +..+.+++|..+
T Consensus 131 --~~-~~~~~v~~~~~~~EE~g~~Ga~~~~~~~-~--~~d~~~~~d~~~ 173 (487)
T 2qyv_A 131 --ND-IAHPELEVLLTMTEERGMEGAIGLRPNW-L--RSEILINTDTEE 173 (487)
T ss_dssp --SS-SCCSSEEEEEESCTTTTCHHHHTCCSSC-C--CCSEEEECCCCC
T ss_pred --CC-CCCCCEEEEEEeccccCCHHHHHHHHhc-c--CCCEEEEEccCC
Confidence 23 4778999999999999999999988743 2 366788888653
No 51
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=98.14 E-value=1.4e-05 Score=87.52 Aligned_cols=150 Identities=18% Similarity=0.076 Sum_probs=98.5
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCC----------
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG---------- 137 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~g---------- 137 (780)
.|-||-+||++++|++|.+++. ++++++.++|+..||.|+.|++......+ . ..+|.+|+.-.+
T Consensus 179 ~~lDnr~g~~~~l~~l~~l~~~--~~~~~v~~~ft~qEEvG~~Ga~~a~~~~~--p--d~~i~~D~~~a~d~p~~~~~lg 252 (355)
T 3kl9_A 179 KAWDNRYGVLMVSELAEALSGQ--KLGNELYLGSNVQEEVGLRGAHTSTTKFD--P--EVFLAVDCSPAGDVYGGQGKIG 252 (355)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSC--CCSSEEEEEEESCCTTTSHHHHHHHHHHC--C--SEEEEEEEEECCGGGTSSCCTT
T ss_pred eccccHHHHHHHHHHHHHhhhc--CCCceEEEEEECccccCcchhHHHHhccC--C--CEEEEecCccCCCCCCcccccC
Confidence 3678999999999999999864 57899999999999999999988765322 2 236888875332
Q ss_pred -CcceEEecC-C--CCchhhHhh---hhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCC
Q 003998 138 -GLDLVCQSG-P--SSWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHD 210 (780)
Q Consensus 138 -g~~~lf~~g-p--~~~l~~~y~---~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~D 210 (780)
|..+....+ . ++.+.+... +....|+.. . . ...+||-..+.....|+|..++... .. ..||+.
T Consensus 253 ~G~~i~~~d~~~~~~~~l~~~l~~~a~~~gIp~q~-~----~--~ggGtDa~~i~~a~~Gipt~~igvp-~~-~~Hs~~- 322 (355)
T 3kl9_A 253 DGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQY-Y----C--GKGGTDAGAAHLKNGGVPSTTIGVC-AR-YIHSHQ- 322 (355)
T ss_dssp SCEEEEEEETTEECCHHHHHHHHHHHHHTTCCEEE-E----E--CSSCCTHHHHTTSTTCCCEEEEEEE-EB-SCSSSC-
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE-E----C--CCcchHHHHHHHhCCCCCEEEEccC-cC-CCCCcc-
Confidence 222322211 1 122333222 222234322 1 1 1268999888632368999997642 22 478876
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHh
Q 003998 211 TVDRLLPGSVQARGDNLFNVLKAFS 235 (780)
Q Consensus 211 t~d~id~~~lq~~g~~~l~l~~~la 235 (780)
|.++.+.++...+.+.++++.+.
T Consensus 323 --E~~~~~Di~~~~~ll~~~l~~l~ 345 (355)
T 3kl9_A 323 --TLYAMDDFLEAQAFLQALVKKLD 345 (355)
T ss_dssp --EEEEHHHHHHHHHHHHHHHHTCC
T ss_pred --eEeeHHHHHHHHHHHHHHHHHhC
Confidence 56678888888888888887653
No 52
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}
Probab=98.09 E-value=4.7e-06 Score=92.32 Aligned_cols=95 Identities=15% Similarity=-0.005 Sum_probs=72.1
Q ss_pred eeeEEEEEeCCCCCCCCCeEEEeeeccCCCC-CCCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC-ccch
Q 003998 35 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF-MLGA 112 (780)
Q Consensus 35 ~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~-spGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~g-l~GS 112 (780)
.+||+++++|.+ +.+.|++.+|+|++|. ..|-+.|+- .|++|.+++.|++.+.+++++|.|+|+.+||.| ..||
T Consensus 61 ~~~via~~~g~~---~g~~i~l~ah~D~vpg~~ha~G~d~~-~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~~~Ga 136 (394)
T 3ram_A 61 ATGFIATYDSGL---DGPAIGFLAEYDALPGLGHACGHNII-GTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSA 136 (394)
T ss_dssp EEEEEEEEECSS---SSCEEEEEECCCCCTTTSSTTCHHHH-HHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCTTCCH
T ss_pred ceEEEEEEeCCC---CCCEEEEEEecccCCCcceECCccHH-HHHHHHHHHHHHHhHhhCCceEEEEEECCccCCCCCch
Confidence 469999999863 3478999999999982 122333443 467899999998765568899999999999999 5999
Q ss_pred H-HHHHhcCcccceeEEEEeccC
Q 003998 113 H-GFMKAHKWRDSVGAVINVEAS 134 (780)
Q Consensus 113 ~-~fv~~h~~~~~i~a~INlD~~ 134 (780)
+ .++++. ..+++.+++.++..
T Consensus 137 ~~~~~~~g-~~~~~d~~~~~h~~ 158 (394)
T 3ram_A 137 KASYVKAG-VIDQIDIALMIHPG 158 (394)
T ss_dssp HHHHHHHT-GGGGCSEEECCEEE
T ss_pred HHHHHHcC-CcccCCEEEEECCc
Confidence 9 777753 33467788877753
No 53
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=98.00 E-value=1.4e-05 Score=90.02 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=72.1
Q ss_pred eeeeEEEEEeCCCCCCCCCeEEEeeeccCCCCC------------------CCCCC---chhHHHHHHHHHHHHHhcCCC
Q 003998 34 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSS------------------PGAGD---CGSCVASMLELARLTIDSGWI 92 (780)
Q Consensus 34 ~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~~s------------------pGA~D---n~sGvA~mLElaR~L~~~~~~ 92 (780)
...||+++++|.+ +.+.|++.+|+|++|.. +|..+ --.++|++|++++.|++.+.+
T Consensus 95 ~~~~vva~~~~~~---~g~~i~l~ah~Davp~~e~~~~~~~Pf~~~~~s~~~G~~h~cGhd~~~a~~l~aa~~L~~~~~~ 171 (445)
T 3io1_A 95 GFAGVVATLDTGR---PGPTLAFRVDMDALDLNEQHDDSHRPHRDHFASCNAGMMHACGHDGHTAIGLGLAHVLKQYAAQ 171 (445)
T ss_dssp TCCCEEEEEECSS---CCCEEEEEEECCCCCC-------------------------CTTCTHHHHHHHHHHHHHHTGGG
T ss_pred CCCEEEEEEeCCC---CCCEEEEEEecCCcCCCCCCCCCcCccccccccCCCCceEecCchHHHHHHHHHHHHHHhCcCc
Confidence 4589999999864 34789999999999842 12111 013699999999999987777
Q ss_pred CCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEecc
Q 003998 93 PPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 133 (780)
Q Consensus 93 p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~ 133 (780)
++.+|+|+|..+|| +..|++.++++.. .+++.+++.++.
T Consensus 172 ~~g~v~l~f~p~EE-~~~Ga~~~i~~g~-~~~~d~~~~~h~ 210 (445)
T 3io1_A 172 LNGVIKLIFQPAEE-GTRGARAMVAAGV-VDDVDYFTAIHI 210 (445)
T ss_dssp CCSEEEEEEESCTT-TTCHHHHHHHTTT-TTTCSEEEEEEE
T ss_pred CCceEEEEEecccc-ccchHHHHHHcCC-ccccceeEEEec
Confidence 89999999999999 6689999998532 346777777663
No 54
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=96.76 E-value=0.0051 Score=67.12 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=93.8
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCCcc-------
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLD------- 140 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg~~------- 140 (780)
.+-||-.||++++|+++.+++ ++.++.++|++-||.|+.|++.-... ...+ .+|.+|+.-.+.+.
T Consensus 182 ~~lDnr~g~~~~l~~l~~l~~----~~~~v~~~ft~qEEVG~~ga~~aa~~--i~pd--~~i~~Dv~~a~dp~~~~~~~~ 253 (354)
T 2vpu_A 182 PYLDDRICLYAMIEAARQLGD----HEADIYIVGSVQEEVGLRGARVASYA--INPE--VGIAMDVTFAKQPHDKGKIVP 253 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHCCC----CSSEEEEEECSCCTTTSHHHHHHHHH--HCCS--EEEEEEEEECCCTTSTTCCCC
T ss_pred ecCccHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccCccchhhhhcc--cCCC--EEEEecccccCCCCcccccCc
Confidence 588999999999999998753 77999999999999999998865542 2222 46666654221110
Q ss_pred -e----EEecCCC--CchhhHhhh---hccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCC
Q 003998 141 -L----VCQSGPS--SWPSSVYAQ---SAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHD 210 (780)
Q Consensus 141 -~----lf~~gp~--~~l~~~y~~---~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~D 210 (780)
+ ....+.. +.+.+...+ ....|+... . ...+++||-..+.....|+|..++..-. . ..||+..
T Consensus 254 ~lg~Gpv~d~~~~~~~~l~~~l~~~a~~~gIp~q~~----~-~~g~gGtDa~~i~~a~~Gipt~~Igvp~-~-~~Hs~~E 326 (354)
T 2vpu_A 254 ELGKGPVMDVGPNINPKLRAFADEVAKKYEIPLQVE----P-SPRPTGTDANVMQINKEGVATAVLSIPI-R-YMHSQVE 326 (354)
T ss_dssp CTTSCCEEEESTTSCHHHHHHHHHHHHHTTCCCEEE----E-CCSCCSSTHHHHHTSTTCCEEEEEEEEE-B-STTSTTC
T ss_pred eECCcceEcCCCCCCHHHHHHHHHHHHHcCCCcEEE----e-CCCCCccHHHHHHHhcCCCCEEEECccc-c-cCcCcce
Confidence 0 1221211 222222221 112232111 1 0112589998875323689999976432 2 3788754
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 211 TVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 211 t~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
.++.+.++...+.+.++++.+..
T Consensus 327 ---~~~~~D~~~~~~ll~~~l~~l~~ 349 (354)
T 2vpu_A 327 ---LADARDVDNTIKLAKALLEELKP 349 (354)
T ss_dssp ---EEEHHHHHHHHHHHHHHHHHCCC
T ss_pred ---EeeHHHHHHHHHHHHHHHHhccH
Confidence 56688888888888888877643
No 55
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=96.11 E-value=0.082 Score=54.80 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=43.5
Q ss_pred CCCCCchHHHhhcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 003998 175 IPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSN 236 (780)
Q Consensus 175 ips~TD~~~F~~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 236 (780)
.+++||-..|.....|+|.+.+..- .. ..||+. |+++.+.+++..+.+.+++++|..
T Consensus 293 ~~ggTDa~~~~~~~~Giptv~~G~g-~~-~~Ht~~---E~v~i~dl~~~~~ll~~~i~~L~~ 349 (354)
T 2wzn_A 293 RPTGTDANVMQINKEGVATAVLSIP-IR-YMHSQV---ELADARDVDNTIKLAKALLEELKP 349 (354)
T ss_dssp SCCSSHHHHHHTSTTCCEEEEEEEE-EB-STTSTT---CEEEHHHHHHHHHHHHHHHHHCCC
T ss_pred cccccHHHHHHHhcCCCCEEEECcc-cC-CCCccc---EEEEHHHHHHHHHHHHHHHHhCcc
Confidence 3578998877422269999998754 33 369976 567789999999999999998864
No 56
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=95.86 E-value=0.021 Score=61.95 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=85.4
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhcCcccceeEEEEeccCCCCC-c-------
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGG-L------- 139 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h~~~~~i~a~INlD~~G~gg-~------- 139 (780)
.+-||-.||++++|++|.++. ++++.++|+.-||.|+.|++.-... ...+ .+|.+|+.-.+. +
T Consensus 177 ~~lDdR~g~~~~l~~l~~l~~-----~~~~~~~ft~qEEVG~~Ga~~aa~~--i~pd--~~i~vDv~~a~d~p~~~~~~~ 247 (343)
T 3isx_A 177 KAMDDRIGCAVIVEVFKRIKP-----AVTLYGVFSVQEEVGLVGASVAGYG--VPAD--EAIAIDVTDSADTPKAIKRHA 247 (343)
T ss_dssp SCHHHHHHHHHHHHHHHHCCC-----SSEEEEEEECCCCTTSCCSTTTGGG--CCCS--EEEEEEEEECCCSTTCCCTTC
T ss_pred ccCccHHHHHHHHHHHHhccC-----CCeEEEEEECCcccCchhHHHHhhc--CCCC--EEEEEeCcCCCCCCCcccccc
Confidence 478999999999999998742 5899999999999999999765442 2222 467777643221 1
Q ss_pred -------ceEEecCCC---CchhhHhh---hhccCccccccccccCCCCCCCCchHHHhhcCCCCcEEEEEEecCCCCCC
Q 003998 140 -------DLVCQSGPS---SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 206 (780)
Q Consensus 140 -------~~lf~~gp~---~~l~~~y~---~~~~~P~~~~~~~~~f~~ips~TD~~~F~~~~~GIPgld~a~~~~~~~YH 206 (780)
.+....+.. +.+.+... +....|+... .. ...+||-..+.....|+|..++..-. . ..|
T Consensus 248 ~~lg~GpvI~~~d~~~~~d~~l~~~l~~~A~~~gIp~Q~~----v~--~ggGTDa~~i~~a~~Gipt~~Igvp~-r-~~H 319 (343)
T 3isx_A 248 MRLSGGPALKVKDRASISSKRILENLIEIAEKFDIKYQME----VL--TFGGTNAMGYQRTREGIPSATVSIPT-R-YVH 319 (343)
T ss_dssp CCTTSCCEEECBTTCCHHHHHHHHHHHHHHHHTTCCCEEC----CC--BCCCSSHHHHHHHTSSCCEEEEEEEE-B-STT
T ss_pred cccCCCcEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEe----cC--CCCchHHHHHHHhcCCCCEEEEcccc-c-ccc
Confidence 111111100 11111111 1112232111 11 12689987765323699999987432 2 378
Q ss_pred CcCCCcCCCCHHHHHHHHHHHHHHH
Q 003998 207 TSHDTVDRLLPGSVQARGDNLFNVL 231 (780)
Q Consensus 207 T~~Dt~d~id~~~lq~~g~~~l~l~ 231 (780)
|+.. .++.+.++.+.+.+.+++
T Consensus 320 s~~E---~~~~~Di~~~~~ll~~~l 341 (343)
T 3isx_A 320 SPSE---MIAPDDVEATVDLLIRYL 341 (343)
T ss_dssp STTE---EECHHHHHHHHHHHHHHH
T ss_pred chhh---EecHHHHHHHHHHHHHHH
Confidence 8755 456777777777766654
No 57
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}
Probab=84.36 E-value=1.5 Score=48.80 Aligned_cols=141 Identities=11% Similarity=0.009 Sum_probs=80.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHHHHhc-Cc-ccce-------------eEEEEe
Q 003998 67 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAH-KW-RDSV-------------GAVINV 131 (780)
Q Consensus 67 pGA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~fv~~h-~~-~~~i-------------~a~INl 131 (780)
..+-||-+||+++||+++.++ +++.++.++| +-||.|..|++.-.... +. .+++ ..+|.+
T Consensus 231 s~~lDdr~~~~~~l~al~~~~----~~~~~v~~~f-d~EEVGs~ga~gA~s~~~~~~l~ri~~~~~~~~~~~~~s~~is~ 305 (428)
T 2ijz_A 231 GARLDNLLSCHAGLEALLNAE----GDENCILVCT-DHEEVGSCSHCGADGPFLEQVLRRLLPEGDAFSRAIQRSLLVSA 305 (428)
T ss_dssp CCCSSCSSTTTTTTTHHHHTT----SCSSSCEEEE-CBSCTTTTCHHHHSSCCTTTSCCSSSSSSSSSTTTTTSCCEEEE
T ss_pred eecCccHHHHHHHHHHHHhcc----cCCceEEEEE-eccccCccchhhhhccccHHHHHHhhhhhhHHHhhhhcCEEEEE
Confidence 478999999999999998774 3567888888 99999999998754321 10 1111 577888
Q ss_pred ccCCCCCcceE--E--------ecCCC------------CchhhHh---hhhccCccccccccccC-CCCCCCCchHHHh
Q 003998 132 EASGTGGLDLV--C--------QSGPS------------SWPSSVY---AQSAIYPMAHSAAQDVF-PVIPGDTDYRIFS 185 (780)
Q Consensus 132 D~~G~gg~~~l--f--------~~gp~------------~~l~~~y---~~~~~~P~~~~~~~~~f-~~ips~TD~~~F~ 185 (780)
|++-+..+..- . ..||- +...+.. ++...-|+.. .+. ...+.+||-.++.
T Consensus 306 Dv~ha~~Pn~~~~~~~~~~~~lg~G~vIk~~~~~~~~~~~~~~~~l~~~a~~~~Ip~Q~----~~~~~d~~gGsd~g~i~ 381 (428)
T 2ijz_A 306 DNAHGVHPNYADRHDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQS----FVTRSDMGCGSTIGPIT 381 (428)
T ss_dssp CCCCCCCSSCGGGCCSSCCCSSSCCCBCCCCSSSCCSCCHHHHTTTTHHHHHTCCCCCB----CCCCSSCCCCCCCSTTT
T ss_pred ecccccCCCCcccccccCCcccCCCcEEEEECCCCCCCCHHHHHHHHHHHHHcCCCeEE----EEEeCCCCccchHHHHH
Confidence 87543211100 0 01110 0001001 1111122211 111 1145778887775
Q ss_pred hcCCCCcEEEEEEecCCCCCCCcCCCcCCCCHH
Q 003998 186 QDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPG 218 (780)
Q Consensus 186 ~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~ 218 (780)
....|||.+|++. .-..-||+..+...-|..
T Consensus 382 ~~~~Gi~tvdiGi--p~~~mHS~~E~~~~~D~~ 412 (428)
T 2ijz_A 382 ASQVGVRTVDIGL--PTFAMHSIRELAGSHDLA 412 (428)
T ss_dssp GGGGSCCEEEECC--CCCSCSSSSCCCCSSHHH
T ss_pred HhCCCCCEEEEch--hhcccchHHHHhhHHHHH
Confidence 3236999999763 222569998887766654
No 58
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=68.80 E-value=1.7 Score=48.91 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=37.3
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHH
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 114 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~ 114 (780)
++-||-.||+++||+++.++ .+++++++++++-||.|..|++.
T Consensus 258 ~~lDdr~~~~~~l~al~~~~----~~~~~~~~~~~d~EEVGs~ga~g 300 (461)
T 2glj_A 258 YGQDDRICAYTSFEAMLEMK----NAKKTCITILVDKEEVGSIGATG 300 (461)
T ss_dssp TTHHHHHHHHHHHHHHHTCC----SCSSCEEEEEECCGGGTCCTTTT
T ss_pred ecchhHHHHHHHHHHHHhhc----cCCCeEEEEEEccCCCCCccccc
Confidence 57899999999999988653 47789999999999999988764
No 59
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=67.92 E-value=2.2 Score=47.83 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchH
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAH 113 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~ 113 (780)
++-||-.||.+++|+++.+ .++.++++++++-||.|..|++
T Consensus 246 ~~lDnr~~~~~~l~al~~~-----~~~~~~~~~~~d~EEVGs~ga~ 286 (450)
T 2glf_A 246 YGQDDRICAYTALRALLSA-----NPEKSIGVIFFDKEEIGSDGNT 286 (450)
T ss_dssp TTHHHHHHHHHHHHHHHHC-----CCSSCEEEEEESCGGGTSCSSS
T ss_pred ecchhhHHHHHHHHHHHhc-----CCCceEEEEEEcccccCCcchh
Confidence 5789999999999998875 3678999999999999988766
No 60
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=66.20 E-value=1 Score=50.66 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccchHHH
Q 003998 68 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGF 115 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~~~p~r~IiFlf~~aEE~gl~GS~~f 115 (780)
++-||-.||+++||+++.+++ .+++++++++++-||.|..|++.-
T Consensus 252 ~~lDdr~~~~~~l~al~~~~~---~~~~~~~~~~~d~EEVGs~ga~ga 296 (458)
T 1y7e_A 252 YGQDDKICVFTSLESIFDLEE---TPNKTAICFLVDKEEIGSTGSTGL 296 (458)
T ss_dssp SSHHHHHHHHHHHHHHSSSSC---CCSSCEECCCBCSTTC--------
T ss_pred ecCccHHHHHHHHHHHHhhhc---cCCceEEEEEEcccccCcccchhh
Confidence 578999999999999886642 477899999999999999888743
No 61
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=44.82 E-value=11 Score=40.52 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=24.6
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCC
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPL 64 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~ 64 (780)
...++..||+++++|++ +.|++.+|.|+++
T Consensus 47 ~~~D~~GNvi~~~~g~~-----~~v~l~aHmDtVg 76 (354)
T 2vpu_A 47 VKVDKLGNVIAHFKGSS-----PRIMVAAHMDKIG 76 (354)
T ss_dssp EEECTTCCEEEEECCSS-----SEEEEECCCCBCE
T ss_pred EEEcCCCeEEEEEcCCC-----CEEEEEecccccc
Confidence 34567789999998852 5799999999986
No 62
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=43.65 E-value=8.9 Score=43.33 Aligned_cols=46 Identities=15% Similarity=-0.029 Sum_probs=34.5
Q ss_pred CCCCchhHHHHHHHHHHHHHhcC----CCCCCCEEEEEeCcccCCccchHH
Q 003998 68 GAGDCGSCVASMLELARLTIDSG----WIPPRPIIFLFNGAEELFMLGAHG 114 (780)
Q Consensus 68 GA~Dn~sGvA~mLElaR~L~~~~----~~p~r~IiFlf~~aEE~gl~GS~~ 114 (780)
++-||-.||.+++|+++.+++.. ..+ ...++++++-||.|+.|++.
T Consensus 282 ~~lDnr~~~~~~leaL~~~~~~~~~~~~~~-~~~v~v~~dqEEVGs~ga~g 331 (496)
T 3vat_A 282 PRLDNLHSCFCALQALIDSCSAPASLAADP-HVRMIALYDNEEVGSESAQG 331 (496)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSHHHHHHCC-SEEEEEEESCGGGTSCSSSS
T ss_pred eccccHHHHHHHHHHHHhhhccccccccCC-CcEEEEEEccCCcCCCcchh
Confidence 68899999999999998875310 012 34459999999999876654
No 63
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=41.00 E-value=60 Score=26.93 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=44.8
Q ss_pred CCCCCCchHHHhhcCCCCcEEEEEEecCC-CCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 003998 174 VIPGDTDYRIFSQDYGDIPGLDIIFLIGG-YYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNS 237 (780)
Q Consensus 174 ~ips~TD~~~F~~~~~GIPgld~a~~~~~-~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a 237 (780)
..++.||-+.|.+ .|+|.+.++-.... ..-|+.. |+++.+.+.+..+....+++.+.+.
T Consensus 22 ~~~g~TDar~~~~--~gip~v~fGPg~~~~~~~H~~d---E~v~i~~l~~~~~iy~~~i~~~~~~ 81 (88)
T 1q7l_B 22 IMPAAGDNRYIRA--VGVPALGFSPMNRTPVLLHDHD---ERLHEAVFLRGVDIYTRLLPALASV 81 (88)
T ss_dssp ECCSCSHHHHHHH--TTCCEEEECCCCSCCCCTTSTT---CEEEHHHHHHHHHHHHHHHHHHHTC
T ss_pred eeceeCcHHHHHH--cCCCEEEECCCCCCcccccCCC---CeeEHHHHHHHHHHHHHHHHHHHcC
Confidence 3568899999974 69999987654321 2456664 4677899999999999999999875
No 64
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=28.87 E-value=34 Score=36.69 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=23.6
Q ss_pred eeeeeeeeEEEEEeCCCCCCCCCeEEEeeeccCCC
Q 003998 30 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPL 64 (780)
Q Consensus 30 ~~y~~~~NVi~~i~G~~~~~~~~~Vll~aH~DS~~ 64 (780)
...++..||++++ |. +.+.|++.||.|+++
T Consensus 48 ~~~D~~Gnvi~~~-g~----~~~~v~l~aHmDevG 77 (343)
T 3isx_A 48 HRIDGLGNLIVWK-GS----GEKKVILDAHIDEIG 77 (343)
T ss_dssp EEECTTCCEEEEE-CC----CSSEEEEEEECCBCE
T ss_pred EEECCCCCEEEEE-CC----CCCEEEEEecccccc
Confidence 4567788999998 42 236799999999985
No 65
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.65 E-value=37 Score=22.60 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhchh
Q 003998 501 VVAAAVGAVTGWCVGPLL 518 (780)
Q Consensus 501 ~ia~~~~~~~~l~~~~l~ 518 (780)
+||.++++.+++.+||-+
T Consensus 8 viaglvalltflafgfwl 25 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577888999999988853
Done!