Your job contains 1 sequence.
>004001
MNVDGKADKRLQELNHCLQAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT
ASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNG
LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC
LSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTG
SNDEDNNGSIGVNGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIH
SNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLDLQLEYQTESPIKLVG
TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDTEYEA
SNKPSKILDINSKSIKDSKELPSLELSLKRLRGVKDIGTTIQDDRNVLRRSDSSAFSRYN
TASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTT
NNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLCSPRQVLLDKRDDLVASSVLVHPR
STQEQLTQHYDNCHHLVHNMQQQHLPHDHDQLSLKKMAEAVPQCGSSNMLGGFVEGNAGN
YSINGSASGSNHGSNGQNGSSTAVNAGGMNVESDNGIAGKSGSGGASGSGSGSGNRIDKN
KFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSREPECS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004001
(780 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 1219 4.9e-124 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 413 5.8e-59 3
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 253 1.6e-31 3
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 227 2.8e-15 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 216 1.9e-14 2
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 176 5.3e-14 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 220 7.0e-14 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 210 1.3e-13 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 185 2.4e-13 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 202 8.9e-13 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 197 9.0e-13 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 197 9.0e-13 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 177 1.7e-12 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 198 4.0e-12 2
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 160 1.2e-10 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 159 1.5e-10 1
UNIPROTKB|Q48P87 - symbol:pilG "Type IV pilus response re... 158 1.9e-10 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 155 4.0e-10 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 154 5.1e-10 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 154 5.1e-10 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 152 8.3e-10 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 150 1.4e-09 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 150 1.4e-09 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 150 1.4e-09 1
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 150 1.4e-09 1
UNIPROTKB|Q1DF43 - symbol:MXAN_0460 "Response regulator" ... 162 2.5e-09 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 147 2.9e-09 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 146 3.7e-09 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 146 3.7e-09 1
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 168 5.5e-09 1
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 168 5.5e-09 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 156 5.9e-09 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 144 6.0e-09 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 144 6.0e-09 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 159 6.3e-09 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 143 7.7e-09 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 142 9.8e-09 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 177 1.2e-08 2
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 141 1.3e-08 1
TIGR_CMR|CPS_1619 - symbol:CPS_1619 "DNA-binding response... 140 1.6e-08 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 160 1.7e-08 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 139 2.1e-08 1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 150 2.6e-08 1
TIGR_CMR|CPS_2524 - symbol:CPS_2524 "DNA-binding response... 151 3.7e-08 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 136 4.3e-08 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 136 4.3e-08 1
UNIPROTKB|Q9KT55 - symbol:VC_1050 "Response regulator" sp... 156 4.8e-08 1
TIGR_CMR|VC_1050 - symbol:VC_1050 "response regulator" sp... 156 4.8e-08 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 131 6.2e-08 2
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 137 6.4e-08 2
TIGR_CMR|GSU_0879 - symbol:GSU_0879 "chemotaxis protein C... 153 6.7e-08 1
UNIPROTKB|Q1CXR3 - symbol:difD "Fibril biogenesis regulat... 134 7.1e-08 1
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp... 134 7.1e-08 1
TIGR_CMR|GSU_3198 - symbol:GSU_3198 "chemotaxis protein C... 134 7.1e-08 1
DICTYBASE|DDB_G0268012 - symbol:DDB_G0268012 "response re... 129 8.0e-08 2
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 133 9.0e-08 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 133 9.0e-08 1
TIGR_CMR|GSU_2041 - symbol:GSU_2041 "sigma-54 dependent D... 155 9.7e-08 1
UNIPROTKB|Q06065 - symbol:atoC "AtoC transcriptional acti... 155 9.9e-08 1
TIGR_CMR|GSU_2313 - symbol:GSU_2313 "response regulator" ... 151 1.0e-07 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 146 1.4e-07 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 145 1.6e-07 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 141 1.8e-07 1
TIGR_CMR|SPO_1624 - symbol:SPO_1624 "DNA-binding response... 136 3.0e-07 2
UNIPROTKB|Q8ECB3 - symbol:flrC "Two component signal tran... 149 4.3e-07 1
TIGR_CMR|SO_3230 - symbol:SO_3230 "flagellar regulatory p... 149 4.3e-07 1
TIGR_CMR|CPS_0081 - symbol:CPS_0081 "response regulator/G... 148 4.9e-07 1
UNIPROTKB|Q7D1A5 - symbol:cheY "Chemotaxis receiver prote... 126 5.1e-07 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 126 5.1e-07 1
NCBI_NP|NP_353549.1 - symbol:cheY "chemotaxisreceiverprot... 126 5.1e-07 1
TIGR_CMR|BA_0271 - symbol:BA_0271 "DNA-binding response r... 141 5.1e-07 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 125 6.5e-07 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 125 6.5e-07 1
TIGR_CMR|GSU_1658 - symbol:GSU_1658 "response regulator/G... 147 7.4e-07 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 145 7.4e-07 1
TIGR_CMR|SPO_1953 - symbol:SPO_1953 "phosphate regulon tr... 139 8.2e-07 1
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 124 8.3e-07 1
UNIPROTKB|Q7D1A8 - symbol:cheY "Chemotaxis receiver prote... 124 8.3e-07 1
NCBI_NP|NP_353545.1 - symbol:cheY "chemotaxisreceiverprot... 124 8.3e-07 1
TIGR_CMR|GSU_1038 - symbol:GSU_1038 "sensory box histidin... 147 8.9e-07 1
UNIPROTKB|Q9KRC3 - symbol:VC_1719 "DNA-binding response r... 139 9.2e-07 1
TIGR_CMR|VC_1719 - symbol:VC_1719 "DNA-binding response r... 139 9.2e-07 1
UNIPROTKB|Q52884 - symbol:cheY2 "CheY2" species:382 "Sino... 123 1.1e-06 1
UNIPROTKB|Q485M3 - symbol:flrC "Flagellar regulatory prot... 145 1.2e-06 1
TIGR_CMR|CPS_1500 - symbol:CPS_1500 "flagellar regulatory... 145 1.2e-06 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 121 1.7e-06 1
TIGR_CMR|DET_0130 - symbol:DET_0130 "response regulator" ... 121 1.7e-06 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 121 1.7e-06 1
TIGR_CMR|GSU_0149 - symbol:GSU_0149 "sensor histidine kin... 142 1.7e-06 1
UNIPROTKB|Q9KQ67 - symbol:VC_2135 "Sigma-54 dependent res... 143 2.2e-06 1
TIGR_CMR|VC_2135 - symbol:VC_2135 "flagellar regulatory p... 143 2.2e-06 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 120 2.2e-06 1
TIGR_CMR|BA_1660 - symbol:BA_1660 "chemotaxis response re... 120 2.2e-06 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 120 2.2e-06 1
TAIR|locus:2031581 - symbol:BBX16 "B-box domain protein 1... 138 2.2e-06 3
TIGR_CMR|CPS_1828 - symbol:CPS_1828 "DNA-binding response... 136 2.4e-06 1
ASPGD|ASPL0000043398 - symbol:AN9048 species:162425 "Emer... 147 2.6e-06 1
TIGR_CMR|ECH_0773 - symbol:ECH_0773 "putative response re... 142 2.6e-06 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 148 2.6e-06 2
TIGR_CMR|CPS_0681 - symbol:CPS_0681 "DNA-binding response... 136 2.6e-06 1
WARNING: Descriptions of 146 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 277/540 (51%), Positives = 344/540 (63%)
Query: 45 SSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVA 104
+ I DV++G G LQ+P Q A VCWERFLH+R+++VLLVENDD TR++V
Sbjct: 41 NGITMDVRNGSSGG------LQIPLSQQTAATVCWERFLHVRTIRVLLVENDDCTRYIVT 94
Query: 105 ALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163
ALLRNC YEV EA+NG+QAWK+LEDL NHID+VLTEV MP LSG+ LL KI++HK+R+N+
Sbjct: 95 ALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNI 154
Query: 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCT-Q 222
PVIMMSS DSMGLVFKCLSKGAVDFLVKPIRKNELK LWQHVWRRC T Q
Sbjct: 155 PVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQ 214
Query: 223 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAVEVD-SPRHM 281
TQKS+KSK+++ S ++GS+DE QSSWTKKAV+VD SPR +
Sbjct: 215 TQKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAV 274
Query: 282 SPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQ 341
S D++ DSTCAQV+HSN E ++ V A KE Q+H+++ E+ RDL++ +
Sbjct: 275 SLWDRV----DSTCAQVVHSNPEFPSNQLVAPPAEKETQEHDDKFEDVTM-GRDLEISIR 329
Query: 342 RSLDLQLEYQTESPIKLVGT-KKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAK 400
R+ DL LE + E K G ++ N + SSK ++ +G LDL+SESPSSK +E
Sbjct: 330 RNCDLALEPKDEPLSKTTGIMRQDNSFEKSSSKWKMKVGKGPLDLSSESPSSKQMHEDG- 388
Query: 401 LAGAITKIIDSDKEDT-EYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDIGT 459
G+ K + S +D E EA N K LD N S+K S G KD GT
Sbjct: 389 --GSSFKAMSSHLQDNREPEAPNTHLKTLDTNEASVKISEELMHVEHSSKRHRGTKDDGT 446
Query: 460 TIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESAS-QVVNSLEIIKKGSDCGIQSHS 518
++DDRNVLRRS+ SAFSRYN ASN NK GGN+ S S Q NS ++IKK ++ HS
Sbjct: 447 LVRDDRNVLRRSEGSAFSRYNPASNANKISGGNLGSTSLQDNNSQDLIKK-TEAAYDCHS 505
Query: 519 NGD---PLNQSSNGGSNNMDMGSTT-NNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKND 574
N + P N S+ GSNN DM STT NNAF KP K S SS+V HSS FQP D
Sbjct: 506 NMNESLPHNHRSHVGSNNFDMSSTTENNAFTKPGAPKVSSAGSSSVK--HSS-FQPLPCD 562
Score = 297 (109.6 bits), Expect = 6.9e-23, P = 6.9e-23
Identities = 88/257 (34%), Positives = 123/257 (47%)
Query: 519 NGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQ---PTKNDL 575
+G L +S +N+ D+ T A+ + + N+S + + + S++F T+N+
Sbjct: 476 SGGNLGSTSLQDNNSQDLIKKTEAAYDCHSNM-NESLPHNHRSHVGSNNFDMSSTTENNA 534
Query: 576 LCSPRQVLLDKRDDLVASSVLVHPRSTQEQLTQHYDNCHHLVHNMXXXXXXXXXXXXSLK 635
P + SS + H S Q H++N H +N+ K
Sbjct: 535 FTKPGAPKVSS----AGSSSVKHS-SFQPLPCDHHNN--HASYNLVHVAER--------K 579
Query: 636 KMAEAVPQCGSSNMLGGFVEGNAG--NYXXXXXXXXXXXXXXXXXXXXTAVNAGGMNVES 693
K+ PQCGSSN+ +EGN NY +NAGGMN+ S
Sbjct: 580 KLP---PQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGS 636
Query: 694 DNXXXXXXXXXXXXXXXXXXX-NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKR 752
DN N D+NK + REAA+TK+RQK+ ERCFRKKVRYQSRK+
Sbjct: 637 DNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKK 696
Query: 753 LAEQRPRIRGQFVRQTA 769
LAEQRPR+RGQFVR+TA
Sbjct: 697 LAEQRPRVRGQFVRKTA 713
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 413 (150.4 bits), Expect = 5.8e-59, Sum P(3) = 5.8e-59
Identities = 75/134 (55%), Positives = 107/134 (79%)
Query: 76 MVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHID 135
+V WE++L L+VLLVE+D STR ++ ALLR C Y+V ++GL AW++L++ +++ID
Sbjct: 25 VVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNID 84
Query: 136 LVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194
L+LTE+ +P +SG ALL+ +M H+ KN+PVIMMSS DS+ +V KC+ +GA D+L+KP+R
Sbjct: 85 LILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMR 144
Query: 195 KNELKNLWQHVWRR 208
KNELKNLWQHVWRR
Sbjct: 145 KNELKNLWQHVWRR 158
Score = 176 (67.0 bits), Expect = 5.8e-59, Sum P(3) = 5.8e-59
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 723 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 774
+ REAA+ K+R K+ +RCF KKVRYQSRK+LAEQRPR++GQFVR T N + S
Sbjct: 415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR-TVNSDAS 465
Score = 62 (26.9 bits), Expect = 5.8e-59, Sum P(3) = 5.8e-59
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 468 LRRSDSSAFSRYNTASNVNKGPGGNIESAS----QVVNSLEIIKK-GSDCG-IQSHSNGD 521
L SD+SAFSR+ + + K ES S S E ++K SD G + SN +
Sbjct: 281 LSLSDASAFSRFEESKSAEKAVVALEESTSGEPKTPTESHEKLRKVTSDQGSATTSSNQE 340
Query: 522 PLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSST 559
+ SS N + + TN P +++ E +++
Sbjct: 341 NIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAAS 378
Score = 39 (18.8 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 361 TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDT 416
T +N+ ++GSS +S + Q + ++ S + E+ + A +K +++ + T
Sbjct: 334 TTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAA-SKEVEAGSQST 388
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 253 (94.1 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 52/128 (40%), Positives = 74/128 (57%)
Query: 82 FLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141
F+ +++LL +ND ++ V LL C Y+VT + Q L ID++L E+
Sbjct: 13 FIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEI 72
Query: 142 -MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+P G+ +L I K + +PVIMMS D + +V KCL GA D+LVKP+R NEL N
Sbjct: 73 DLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLN 132
Query: 201 LWQHVWRR 208
LW H+WRR
Sbjct: 133 LWTHMWRR 140
Score = 170 (64.9 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 715 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT--ANEN 772
N + NK RE A+ K+R+K+ +RCF KK+RY +RKRLAE+RPR++GQFVR+ N +
Sbjct: 523 NEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVD 582
Query: 773 TSREPE 778
+ +P+
Sbjct: 583 LNGQPD 588
Score = 46 (21.3 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 22/110 (20%), Positives = 46/110 (41%)
Query: 496 ASQVVNSLEIIKKGSDCGIQSHSNG-DPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKS 554
AS+ +N+ + ++ + +NG DP + NG S+++ G+ + G+ N
Sbjct: 309 ASEGINNTKQARRATPKSTVLRTNGQDPPLVNGNG-SHHLHRGAAEKFQVVASEGINNTK 367
Query: 555 EVSSTVNCLHSSSFQPTKNDLLCSPRQVLLDKRDDLVASSVLVHPRSTQE 604
+ + S T + P + +R + +S+ H R+ QE
Sbjct: 368 QAHRSRGTEQYHSQGETLQNGASYPHSL---ERSRTLPTSMESHGRNYQE 414
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 227 (85.0 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 49/122 (40%), Positives = 76/122 (62%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L+VL+V++D + ++ +LR C YEVT+ A +L + D+V+++V MP +
Sbjct: 37 LRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMD 96
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G LL + +LPVIMMS+ DS +V K ++ GAVD+L+KP+R LKN+WQHV
Sbjct: 97 GFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVV 153
Query: 207 RR 208
R+
Sbjct: 154 RK 155
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 216 (81.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 47/121 (38%), Positives = 74/121 (61%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++VL V++D + ++ +LLR+C Y VT +A ++L + N DLV+++V MP +
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G LL + +LPVIM+S+ V K ++ GA D+L+KP+R ELKN+WQHV
Sbjct: 77 GFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVV 133
Query: 207 R 207
R
Sbjct: 134 R 134
Score = 49 (22.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 505 IIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNN 542
+++ D S++NGD + S N G N D + N
Sbjct: 132 VVRSRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGN 169
Score = 47 (21.6 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 485 VNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGG-------SNNMDMG 537
+N G + S S + ++ +D G H + PLN S G D
Sbjct: 310 LNTPSGIGVRSLSSPPAGM-FLQNQTDIGKFHHVSSLPLNHSDGGNILQGLPMPLEFDQL 368
Query: 538 STTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLCSP 579
T NN K + + ++ T + SF +N L+ +P
Sbjct: 369 QTNNN---KSRNMNSNKSIAGT--SMAFPSFSTQQNSLISAP 405
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 176 (67.0 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 723 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 774
+ REAA+ K+R K+ +RCF KKVRYQSRK+LAEQRPR++GQFVR T N + S
Sbjct: 130 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR-TVNSDAS 180
Score = 39 (18.8 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 361 TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDT 416
T +N+ ++GSS +S + Q + ++ S + E+ + A +K +++ + T
Sbjct: 49 TTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAA-SKEVEAGSQST 103
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 220 (82.5 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 48/123 (39%), Positives = 75/123 (60%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+L+VL+V++D + ++ +L C Y VT+ A +L N D+V+++V MP +
Sbjct: 27 NLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDM 86
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G LL + +LPVIMMS+ DS +V K ++ GAVD+L+KP+R LKN+WQHV
Sbjct: 87 DGFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHV 143
Query: 206 WRR 208
R+
Sbjct: 144 VRK 146
Score = 41 (19.5 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 481 TASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSS 527
T S++ PG N++S+ ++ + + +G + S P+ SS
Sbjct: 379 TGSHMRLRPGQNVQSSGMMLPVADQLPRGGPSMLPSLGQ-QPILSSS 424
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 210 (79.0 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++VL V++D + ++ LL+ C Y VT A ++L + N DLV+++V MP +
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G LL + +LPVIM+S+ V K + GA D+L+KP+R ELKN+WQHV
Sbjct: 77 GFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVV 133
Query: 207 RR 208
R+
Sbjct: 134 RK 135
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 185 (70.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 40/117 (34%), Positives = 71/117 (60%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
VL V++ R V++ LLR+ Y VT +G +A ++L L ++ +++T+ MP ++G
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLS-LDRNVHMIITDYCMPEMTGF 71
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
LL ++ K +PV++MSS +S + +CL +GA DFL+KP+R +++ L V
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRV 128
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 202 (76.2 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 46/122 (37%), Positives = 72/122 (59%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L+VL+V++D + ++ +L+ C YEVT +A ++L + + D+V+++V MP +
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMD 70
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G LL + +LPVIMMS V K + GA D+L+KPIR ELK +WQHV
Sbjct: 71 GFKLLEHV---GLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 207 RR 208
R+
Sbjct: 128 RK 129
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 197 (74.4 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 42/122 (34%), Positives = 72/122 (59%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
L+VL++++D S V+ LL C Y+VT N +A + D +DLV+++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G+ +L ++ S + +P ++M+S V K ++ GA DFL+KP+R EL N+WQH++
Sbjct: 71 GLLILQEVTS---KFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 207 RR 208
R+
Sbjct: 128 RK 129
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 197 (74.4 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 42/122 (34%), Positives = 72/122 (59%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
L+VL++++D S V+ LL C Y+VT N +A + D +DLV+++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G+ +L ++ S + +P ++M+S V K ++ GA DFL+KP+R EL N+WQH++
Sbjct: 71 GLLILQEVTS---KFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 207 RR 208
R+
Sbjct: 128 RK 129
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 37/120 (30%), Positives = 71/120 (59%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEV-MPCL 145
+ VL V++ R V+A +LR+ Y VT + +A ++L L ++++++T+ MP +
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGM 109
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+G LL ++ K +PV++MSS + + +CL +GA DFL+KP+R +++ L +
Sbjct: 110 TGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 198 (74.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 48/122 (39%), Positives = 72/122 (59%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L++L+V++D S ++ +L Y+VT + A IL + + DLVL++V MP ++
Sbjct: 11 LRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMN 70
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G LL ++ +LPVIMMS V ++ GA D+L+KPIR ELKN+WQHV
Sbjct: 71 GYNLLQQV--GLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVV 128
Query: 207 RR 208
RR
Sbjct: 129 RR 130
Score = 37 (18.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 590 LVASSVLVHPRSTQEQLTQHYDNCHH 615
LV+S L HP++ Q DN HH
Sbjct: 280 LVSSGQL-HPQTLAALFGQPIDN-HH 303
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 50/167 (29%), Positives = 86/167 (51%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-----EDLTN----HIDLVL 138
L VL V++ R V+ LLR +VT +G +A + L + +N ++L++
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 139 TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
T+ MP LSG LL KI + +PV++MSS + + + +CL +GA +FL+KP++ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 198 LKNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVENSGNNTGSNDE 244
+K + Q + R C S K K E+S ++ S+D+
Sbjct: 144 VKRIKQLIMRN-------EAEECKILSHSNKRKLQEDSDTSSSSHDD 183
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 159 (61.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 48/171 (28%), Positives = 88/171 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-----ED--LTNHID------- 135
VL V++ R ++ LL+ ++VT +G +A + L ED ++ D
Sbjct: 11 VLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEVAVN 70
Query: 136 LVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194
L++T+ MP ++G LL KI +++PV++MSS + + +CL +GA +F +KP+R
Sbjct: 71 LIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPVR 130
Query: 195 KNELKNLWQHVWR-RC--HXXXXXXXXXCTQTQKSIKSKNVENSGNNTGSN 242
+++ L H+ + RC H +++ S + ENS ++T SN
Sbjct: 131 LSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNS-SNPTSENSSSSTSSN 180
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 158 (60.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM- 142
H +LKV+++++ + R LL+N G EV A +G A + D NH ++ ++M
Sbjct: 4 HASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIAD--NHPRIIFVDIMM 61
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK--GAVDFLVKPIRKNEL 198
P L G + I +++ K+ PVIM+SS D GL K + G+ FL KP K EL
Sbjct: 62 PRLDGYQTCALIKNNRAFKSTPVIMLSSKD--GLFDKAKGRIVGSDQFLTKPFSKEEL 117
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 155 (59.6 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 38/113 (33%), Positives = 64/113 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V+ V++ R V+ ALLR Y +G +A +IL N + +++T+ MP ++G
Sbjct: 93 VMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSEPN-VSMIITDYWMPEMTGY 147
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
LL KI K +PV++MSS + + +CL +GA DFL+KP+R ++ +
Sbjct: 148 DLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRI 200
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 32/124 (25%), Positives = 74/124 (59%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V+++++ R + LL G+EV +NG +A L+ +++++T++ MP ++G
Sbjct: 8 KILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQ--REVNVIVTDINMPEMNG 65
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ L ++ R N VIM+++ + + ++ GA +++ KP++ +ELK++ +++
Sbjct: 66 ITFLRELNKSFPRSN--VIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKIFK 123
Query: 208 R-CH 210
CH
Sbjct: 124 ESCH 127
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139
ER L + S KV +V D +TR L+ G +V E + G EDL ++L++T
Sbjct: 41 ERLLRVSSCKVTVV--DSATR-----ALQYLGLDVEEKSVGF------EDLK--VNLIMT 85
Query: 140 EV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ MP ++G LL KI + +PV++MSS + + + +CL +GA DFL+KP++ +++
Sbjct: 86 DYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDV 145
Query: 199 KNL 201
K L
Sbjct: 146 KRL 148
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 152 (58.6 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 41/129 (31%), Positives = 74/129 (57%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL--------EDLTN--HIDLV 137
L VL V+++ R +V +L+ +VT A NGL+A + L + LTN ++L+
Sbjct: 20 LHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLI 79
Query: 138 LTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKN 196
+T+ MP ++G LL K+ K +PV+++SS + + KCL+ GA F+ KP++ +
Sbjct: 80 ITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLS 139
Query: 197 ELKNLWQHV 205
+++ L H+
Sbjct: 140 DVEKLKCHL 148
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/114 (30%), Positives = 64/114 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ L GYE V EA +G++AW+ L D +++T+ MP +
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWNMPEM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+G+ L+ K+ S K +P+IM+++ V L G +++VKP LK
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/111 (32%), Positives = 64/111 (57%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ S RHVV+ LR GYEV +A +G A L + I+L++++V MP + G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNG--DKINLIISDVNMPNMDG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
++ L ++ H K PVIM+++ + + GA ++VKP + ++
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQM 111
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/124 (30%), Positives = 70/124 (56%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
S +VL+V++ R ++ +L GYEV EA NG QA ++ ++L D+V ++ MP
Sbjct: 2 SARVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPE 59
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
+ G+ + +I K N +IM S++ LV + + GA+DF+VKP +++ + ++
Sbjct: 60 MDGIQAVREIK--KIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEK 117
Query: 205 VWRR 208
+R
Sbjct: 118 TLKR 121
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/111 (32%), Positives = 64/111 (57%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ S RHVV+ LR GYEV +A +G A L + I+L++++V MP + G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNG--DKINLIISDVNMPNMDG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
++ L ++ H K PVIM+++ + + GA ++VKP + ++
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQM 111
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 162 (62.1 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 41/105 (39%), Positives = 67/105 (63%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++LLV++++S R +AA L G+ V EA NG +A ++LE + +D+VLT++ MP L G
Sbjct: 11 RILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLLEKQS--VDVVLTDIRMPGLHG 68
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
V LL +I R ++PV++M++ + LV L++GA L KP
Sbjct: 69 VELLRRIKQE--RPDMPVVLMTAFTAEELVDDALAEGAFTVLPKP 111
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 147 (56.8 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/120 (26%), Positives = 68/120 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ L G++ V EA +G++AW +L + +++T+ MP +
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTK-NEDVKVLITDWNMPEM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+G+ L+ K+ + K +++P+IM+++ V L G +++VKP LK + V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 146 (56.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 37/125 (29%), Positives = 68/125 (54%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R +V LLR+ G+ T EA +GL A +L+ D V+T+ MP
Sbjct: 7 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + + K+LPV+M+++ + + G ++VKP LK
Sbjct: 65 GMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLD 124
Query: 204 HVWRR 208
++ R
Sbjct: 125 KIFER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 146 (56.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 37/125 (29%), Positives = 68/125 (54%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R +V LLR+ G+ T EA +GL A +L+ D V+T+ MP
Sbjct: 7 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + + K+LPV+M+++ + + G ++VKP LK
Sbjct: 65 GMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLD 124
Query: 204 HVWRR 208
++ R
Sbjct: 125 KIFER 129
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 168 (64.2 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 40/121 (33%), Positives = 74/121 (61%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVL 138
++ +++++ +L+VE+ + + V+ LL GY+VT A NGLQA ++LE NH+ DLVL
Sbjct: 446 QQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEK--NHVFDLVL 503
Query: 139 TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
++ MP + G+A +KI+ K +P+I +++ + C+ G D ++KPIR +
Sbjct: 504 MDISMPIMDGIAA-TKILRDK-HIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKD 561
Query: 198 L 198
+
Sbjct: 562 I 562
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 168 (64.2 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 40/121 (33%), Positives = 74/121 (61%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVL 138
++ +++++ +L+VE+ + + V+ LL GY+VT A NGLQA ++LE NH+ DLVL
Sbjct: 446 QQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEK--NHVFDLVL 503
Query: 139 TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
++ MP + G+A +KI+ K +P+I +++ + C+ G D ++KPIR +
Sbjct: 504 MDISMPIMDGIAA-TKILRDK-HIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKD 561
Query: 198 L 198
+
Sbjct: 562 I 562
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 156 (60.0 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 43/128 (33%), Positives = 72/128 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL---EDLTN------HIDLVLTE 140
VL V++ R V+ LLR +VT +G +A + L +D +DL++T+
Sbjct: 35 VLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLIITD 94
Query: 141 V-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
MP ++G LL KI + K +PV++MSS + M + +CL +GA DFL+KP++ ++K
Sbjct: 95 YCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLADVK 154
Query: 200 NLWQHVWR 207
L ++ R
Sbjct: 155 RLRSYLTR 162
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 144 (55.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 34/115 (29%), Positives = 72/115 (62%)
Query: 89 KVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++L+ E+ + R ++ A +++ G+EV EA++G +A ++L +DL++T++ MP ++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP--RERLDLIITDINMPDIN 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
G+ L+S + + +++P+ ++S+ S K LS GA ++LVKP L++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 144 (55.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 34/115 (29%), Positives = 72/115 (62%)
Query: 89 KVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++L+ E+ + R ++ A +++ G+EV EA++G +A ++L +DL++T++ MP ++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP--RERLDLIITDINMPDIN 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
G+ L+S + + +++P+ ++S+ S K LS GA ++LVKP L++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 159 (61.0 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 44/134 (32%), Positives = 73/134 (54%)
Query: 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNH--------- 133
L L + VL V++ R V+ LLR +VT +G +A + L L N
Sbjct: 29 LDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFL-GLDNEKASAEFDRL 87
Query: 134 -IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191
+DL++T+ MP ++G LL KI + +PV++MSS + + + +CL +GA DFL+K
Sbjct: 88 KVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLK 147
Query: 192 PIRKNELKNLWQHV 205
P++ ++K L H+
Sbjct: 148 PVKLADVKRLRSHL 161
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 143 (55.4 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 43/127 (33%), Positives = 69/127 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLR--NCGYEVTE-ATNGLQAWKI---------LEDLTNHID 135
L VL V++ R + LLR +C V + AT LQ + EDL I+
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLK--IN 82
Query: 136 LVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194
L++T+ MP ++G LL KI + +PV++MSS + + + +CL +GA DFL+KP++
Sbjct: 83 LIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 142
Query: 195 KNELKNL 201
++K L
Sbjct: 143 LADVKRL 149
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 142 (55.0 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 34/123 (27%), Positives = 70/123 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ LLR+ G+ T EA +GL A +L+ + D ++T+ MP +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQ--SGAFDFLVTDWNMPGM 58
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+G+ LL ++ + + K+LPV+M+++ + + G ++VKP LK + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 206 WRR 208
+ R
Sbjct: 119 FER 121
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 177 (67.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/127 (34%), Positives = 67/127 (52%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+++L+ ++DD R ++ LL+ Y VT NG AW+ + DLVLT+VM P ++
Sbjct: 160 VRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHIT 219
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLD-SMGLVFKCLSKGAVDFLVKPIRKNELKN----L 201
G LL +I H +++PVI+MS + G DFL KPI K LK +
Sbjct: 220 GFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTV 279
Query: 202 WQHVWRR 208
Q +W+R
Sbjct: 280 LQSIWQR 286
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 498 QVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNN 542
Q + I+ K I N D ++ SS+ + + S++NN
Sbjct: 744 QFMEDPTILVKSKLPKIDEEENRDKVSSSSSSSTAPLTSTSSSNN 788
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/122 (27%), Positives = 68/122 (55%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ S VL+V++ RHVV+ L VT + +QA L D + +D+++++ MP
Sbjct: 1 MSSPHVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL-DSEHDVDMIVSDYCMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
++G LL ++ +LPV++ SS + + KCL GA D+++KP++ ++ + +
Sbjct: 60 DMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMK 119
Query: 204 HV 205
++
Sbjct: 120 YI 121
>TIGR_CMR|CPS_1619 [details] [associations]
symbol:CPS_1619 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009061
InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 GO:GO:0003677
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 SUPFAM:SSF46955
TIGRFAMs:TIGR01764 ProtClustDB:CLSK741041 RefSeq:YP_268357.1
ProteinModelPortal:Q485A8 STRING:Q485A8 GeneID:3520728
KEGG:cps:CPS_1619 PATRIC:21466431 HOGENOM:HOG000133916 OMA:DEYEIAM
BioCyc:CPSY167879:GI48-1696-MONOMER Uniprot:Q485A8
Length = 185
Score = 140 (54.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/112 (32%), Positives = 60/112 (53%)
Query: 90 VLLVENDDSTRHVVAALLRNC--GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+++VE+D ++ + +EV A +G +A ++E + I + L VMP + G
Sbjct: 66 IIIVEDDKQHADLLVEFIEVLYPKFEVKVAYSGFEAGSMIEKIKPSI-IFLDLVMPDIDG 124
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
A+ I S++ KN P+I MS L + K ++ GA FL+KPIR + LK
Sbjct: 125 FAVCKHIRSNEASKNTPIIAMSGLSQQENIEKVIASGANTFLMKPIRLSVLK 176
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 43/123 (34%), Positives = 73/123 (59%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
L S+ VL+V++++ R +++ +L +T A NGL+A ++L D + IDL+L ++ MP
Sbjct: 2 LDSISVLVVDDEEMNRELLSVMLDGLATPIT-AQNGLEALRVL-DKNSAIDLILLDLEMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK-NLW 202
L+G A L+ + H ++PVI++++ S V + L GA DFL KP EL+ +
Sbjct: 60 ELNGFATLATLKKHPLWCDIPVIVLTA--SKDEVTRTLRLGANDFLAKPYDTEELRLRVM 117
Query: 203 QHV 205
HV
Sbjct: 118 NHV 120
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 34/123 (27%), Positives = 68/123 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ LLR+ G+ T EA +G A +L + ID ++T+ MP +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLN--SGSIDFLVTDWNMPGM 58
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+G+ LL + + + K+LPV+M+++ + + G ++VKP LK + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 206 WRR 208
+ R
Sbjct: 119 FER 121
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 150 (57.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 42/121 (34%), Positives = 67/121 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
+VL+V+++ R +V L N GYE EA NG +A K LE T+H D V+ ++M P + G
Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLE--TDHYDFVVLDIMMPEMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+++ +I KT ++P+I +++ L GA D++VKP EL + V R
Sbjct: 63 LSVCKEI--RKT-SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 208 R 208
R
Sbjct: 120 R 120
>TIGR_CMR|CPS_2524 [details] [associations]
symbol:CPS_2524 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_269240.1 ProteinModelPortal:Q481M9 STRING:Q481M9
GeneID:3520591 KEGG:cps:CPS_2524 PATRIC:21468113 OMA:NIANYME
ProtClustDB:CLSK938208 BioCyc:CPSY167879:GI48-2587-MONOMER
Uniprot:Q481M9
Length = 240
Score = 151 (58.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 45/154 (29%), Positives = 77/154 (50%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
+SL +L+VE+ S +A + + G+ + AT G Q ++ LTNH DLV+ ++ +P
Sbjct: 4 QSLYILVVEDQQSIAQNIANYMEDKGHVLDFATQGDQGLELA--LTNHYDLVILDLNLPV 61
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
+ G+ + K+ + R ++P+IM+++ DS+ + GA D+L KP EL+
Sbjct: 62 MDGLEVCKKLRK-QARHHVPIIMLTARDSIDDKISGFTLGADDYLTKPFSLEELEVRCFA 120
Query: 205 VWRRCHXXXXXXXXXCTQTQKSIKSKNVENSGNN 238
+ RR H Q K + V SG N
Sbjct: 121 LSRR-HLLQTNDTLIFDQLCIDRKRQQVTRSGQN 153
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 136 (52.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 35/108 (32%), Positives = 67/108 (62%)
Query: 90 VLLVENDDSTRHVVA-ALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLS 146
VL+VE+ + R ++A AL R G + EA++G+ L+ L+ H IDL+LT++ MP +
Sbjct: 6 VLIVEDSPTMRQLIAFALKRIPGISIVEASDGVDG---LKKLSAHAIDLILTDINMPVMD 62
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194
G+ L+S + S + ++LP+ ++++ + + L+ GA ++ KPI+
Sbjct: 63 GLKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQ 110
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 136 (52.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 35/125 (28%), Positives = 66/125 (52%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R ++ LLR+ G+ T EA +G A +L+ D V+T+ MP
Sbjct: 3 KNMKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQK--GDFDFVVTDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + + K+LPV+M+++ + G ++VKP LK
Sbjct: 61 GMQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLD 120
Query: 204 HVWRR 208
++ R
Sbjct: 121 KIFER 125
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 156 (60.0 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 38/105 (36%), Positives = 62/105 (59%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+LLV++D R + L+ GY+V EA NGL + L D + DL+L ++ MP L+G+
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRD--HEPDLILCDLSMPVLNGI 84
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ ++ S + +LP++++S+ + M V K L G DFL KPI
Sbjct: 85 EFVEEVSS--SYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 156 (60.0 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 38/105 (36%), Positives = 62/105 (59%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+LLV++D R + L+ GY+V EA NGL + L D + DL+L ++ MP L+G+
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRD--HEPDLILCDLSMPVLNGI 84
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ ++ S + +LP++++S+ + M V K L G DFL KPI
Sbjct: 85 EFVEEVSS--SYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 131 (51.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 24/76 (31%), Positives = 49/76 (64%)
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
++L++T+ MP ++G LL ++ + K++PV++MSS + + +CL GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKP 133
Query: 193 IRKNELKNLWQHVWRR 208
++ ++K L H+ +R
Sbjct: 134 VKLADMKKLKSHLLKR 149
Score = 59 (25.8 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL 127
VL V++ R ++ LL+N Y+VT +G +A ++L
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELL 49
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 137 (53.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 42/133 (31%), Positives = 65/133 (48%)
Query: 79 WERFLHLRSLKVLLVEN------DDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN 132
WE F + LKVLL+ N D S+ + L + Y VT T+ +A +
Sbjct: 11 WENFP--KGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPE 68
Query: 133 HIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+ + EV +S + K + + LP IM+S+ + KC++ GAV+FL KP
Sbjct: 69 SFHIAIVEVN--MSAESESFKFLE-AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKP 125
Query: 193 IRKNELKNLWQHV 205
+ +LKN+WQHV
Sbjct: 126 LSPEKLKNIWQHV 138
Score = 68 (29.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 33/161 (20%), Positives = 61/161 (37%)
Query: 333 SRDLDVGGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSK----LSEQIDRGQLDLNSE 388
SR LD Q +++ +E S K + D+G SK + ++D ++ + E
Sbjct: 189 SRLLDGDCQENINFSMENVNSSTEK---DNMEDHQDIGESKSVDTTNRKLDDDKVVVKEE 245
Query: 389 SPSSKLKYEA--AKLAGAITKIIDSDKEDTEYEASNKPSKILDINSKSIKDSXXXXXXXX 446
S+ + E L T +D K++ E + NK S I +++
Sbjct: 246 RGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPEL 305
Query: 447 XXXXXXGVKDIGTTIQDDRNVLRRSDSSAFSRYNTASNVNK 487
V+ +G +L +R+N AS++ K
Sbjct: 306 HKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQK 346
Score = 37 (18.1 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 19/93 (20%), Positives = 37/93 (39%)
Query: 455 KDIGTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGI 514
+DIG + D + D + + + G + S+ +S++I KK +
Sbjct: 220 QDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKP 279
Query: 515 QSHSNGDPLNQSSNGGSNN-MDMGSTTNNAFIK 546
+ S+G N S N S +D + F++
Sbjct: 280 INKSSGIK-NVSGNKTSRKKVDWTPELHKKFVQ 311
>TIGR_CMR|GSU_0879 [details] [associations]
symbol:GSU_0879 "chemotaxis protein CheV" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
RefSeq:NP_951936.1 ProteinModelPortal:Q74ET0 DNASU:2687281
GeneID:2687281 KEGG:gsu:GSU0879 PATRIC:22024521
HOGENOM:HOG000255028 ProtClustDB:CLSK828077
BioCyc:GSUL243231:GH27-857-MONOMER Uniprot:Q74ET0
Length = 312
Score = 153 (58.9 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 43/127 (33%), Positives = 68/127 (53%)
Query: 86 RSLKVLLVENDDS-TRHVVAALLRNCGYEVTEATNGLQAWKILED-----------LTNH 133
RS + +LV +D + R+ + + LR GY V EA NG AW +++D L +
Sbjct: 179 RSQRRILVADDSAFIRNSICSSLRGAGYNVDEAENGEDAWNMIQDKLTRCRAAGVNLRSE 238
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+DL++T+V MP + G+ L + + K+LPV++ SSL S K GA+D + KP
Sbjct: 239 LDLLITDVEMPKMDGLHLTTLVKKDDVLKDLPVLIFSSLASDDNKRKWKDLGALDIVTKP 298
Query: 193 IRKNELK 199
N +K
Sbjct: 299 DLPNLVK 305
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 38/112 (33%), Positives = 63/112 (56%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTE-VMPCLS 146
+VL+V++ R+++ + + G+EV EA NGL+A + ++L DL + VMP S
Sbjct: 4 RVLVVDDAIFMRNMIKDIFASGGFEVVGEAANGLEAVEKYKELKP--DLTTMDIVMPFKS 61
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ +I+ K + VIM S+L LV + + GA DF+VKP R ++
Sbjct: 62 GIEATREII--KADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDV 111
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S KVLLV++ R +V+ L+ GYEV EA NG A + L + T + +VL +MP +
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-IVLDIMMPVMD 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G +L K+ + K +PVI++++ LS GA + KP ++ +H+
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 34/118 (28%), Positives = 66/118 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+V++V++ R+++ +L + GYEV EA++G +A D+ + + L +MP +G
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRPDV-VTLDIIMPVKNG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ L +IM+ + V++ S++ LV K S GA DF++KP +K++ + V
Sbjct: 63 IEALREIMAIDPKAR--VVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>DICTYBASE|DDB_G0268012 [details] [associations]
symbol:DDB_G0268012 "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 dictyBase:DDB_G0268012 GO:GO:0006355 GO:GO:0035556
EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_647491.1
ProteinModelPortal:Q55FP2 EnsemblProtists:DDB0233892 GeneID:8616298
KEGG:ddi:DDB_G0268012 InParanoid:Q55FP2 OMA:DDHLFKP Uniprot:Q55FP2
Length = 382
Score = 129 (50.5 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 33/112 (29%), Positives = 60/112 (53%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG- 147
+L+VE+D R + + L+ G+++T A NGLQA +E+ N D++L +V MP + G
Sbjct: 10 ILVVEDDPLNRIIASKFLKKLGHKITLAENGLQAVNAVEN--NKYDIILMDVNMPIMGGK 67
Query: 148 -VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ + M R P+I +++++ +C+ G D L KP + +L
Sbjct: 68 EATKIIREMQQSLRIKTPIIGLTTVERQ----ECIEAGMDDHLFKPCKFQQL 115
Score = 71 (30.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 476 FSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMD 535
F+ N +N+N NI S + N+ ++ + N + N ++N +NN +
Sbjct: 222 FNNNNNNNNINNNYN-NINSVNSQCNNNNCNNNNNNIYNNYYYNNNNNNNNNNNNNNNNN 280
Query: 536 MGSTTNNAFIKPAGLKNKSEVSSTVN 561
+ NN +K ++E++ VN
Sbjct: 281 NNNNNNNNNNNNNNIKTETEINFVVN 306
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 133 (51.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 30/110 (27%), Positives = 61/110 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
++ V++ S R +V+ L+ GY+V EA +G A L +D+V+T++ MP L G+
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAG--TRVDMVITDLNMPNLDGI 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L+ + ++ T + P++M+++ + + GA ++VKP + +L
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 133 (51.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 30/110 (27%), Positives = 61/110 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
++ V++ S R +V+ L+ GY+V EA +G A L +D+V+T++ MP L G+
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAG--TRVDMVITDLNMPNLDGI 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L+ + ++ T + P++M+++ + + GA ++VKP + +L
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 155 (59.6 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 35/113 (30%), Positives = 64/113 (56%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++++ RH++ A+LR GYE EA +G A + + D +L ++ MP + G
Sbjct: 4 RILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAA--LAQASAAAYDFILCDIRMPIMDG 61
Query: 148 VALLSKIMSHKTRKNLP--VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
V L + LP VIMMS+ ++ C+ +GA D++ KP + +E+
Sbjct: 62 VGFLRTFQ----KAELPGTVIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEI 110
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 155 (59.6 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 37/114 (32%), Positives = 67/114 (58%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++D+ R +++ G+E A NG A + D+ H D+VL ++ MP + G
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDG 63
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
+ L ++ SH+TR PVI+M++ + + L GA D+++KP +EL NL
Sbjct: 64 IKALKEMRSHETRT--PVILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL-NL 114
>TIGR_CMR|GSU_2313 [details] [associations]
symbol:GSU_2313 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001054
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
Pfam:PF00990 GO:GO:0006355 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P08402 HOGENOM:HOG000167205 RefSeq:NP_953362.1
ProteinModelPortal:Q74AN9 GeneID:2687341 KEGG:gsu:GSU2313
PATRIC:22027481 OMA:ARYRYLC ProtClustDB:CLSK763191
BioCyc:GSUL243231:GH27-2319-MONOMER Uniprot:Q74AN9
Length = 301
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 36/122 (29%), Positives = 73/122 (59%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+++L+ ++D ++R ++ L++ GY+V EA +G QAW+ L+ VL VMP + G
Sbjct: 1 MRILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEELQKSDAPKLAVLDWVMPVMDG 60
Query: 148 VALLSKIMSHKTRKNLP-VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
V ++ ++ + ++ ++LP ++++++ + V + L GA D++ KP EL+ Q V
Sbjct: 61 VEVIRQVRA-RSAEHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGELRARIQ-VG 118
Query: 207 RR 208
RR
Sbjct: 119 RR 120
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 39/115 (33%), Positives = 66/115 (57%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQ-AWKILEDLTNHIDLVLTEV-MPC 144
+KVL+VE+D + L G +E+ +A N ++ A ++LE+ + IDLVL ++ MP
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEE--SRIDLVLLDIFMPE 59
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+G LL I + + K + ++M+S++ MG + K L G VD+L+KP K
Sbjct: 60 ETGFELLMYIRNQE--KEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFK 112
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 145 (56.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 41/122 (33%), Positives = 67/122 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRN--CG--YEVTEATNGLQAWKIL----EDLTNHIDLVLTE 140
+VLLV++ R VV LL + C + V + +A + L E ID+VLT+
Sbjct: 9 RVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTD 68
Query: 141 V-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
MP ++G LL I + K +PVI+MSS + + +C++ GA DF+VKP++ +++
Sbjct: 69 YCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQ 128
Query: 200 NL 201
L
Sbjct: 129 RL 130
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 141 (54.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 40/130 (30%), Positives = 71/130 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILE-DLTN--------HIDLVL 138
L VL V++ R V+ LL+ +VT +G +A + L D N ++L++
Sbjct: 18 LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLIV 77
Query: 139 TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
T+ MP L+G LL KI + +PV++MSS + + +C+ +GA +FL+KP++ +
Sbjct: 78 TDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLAD 137
Query: 198 LKNLWQHVWR 207
+K L + + R
Sbjct: 138 VKRLKELIMR 147
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 136 (52.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHID-LVLTEVMPCL 145
S +VL+VE+D TR +A G+ V A +G + D D +VL ++P L
Sbjct: 2 SRRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATD--GGFDAMVLDRMLPGL 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G+AL+ + + N PVIM++++ ++ K L GA D+LVKP EL + +
Sbjct: 60 DGLALIKSVRA--AGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEAL 117
Query: 206 WRRCHXXXXXXXXXCTQTQKSIKSKNVENSG 236
RR C + + + V +G
Sbjct: 118 LRRPQDTQEATVLACRDLEMDLMRRKVTRAG 148
Score = 45 (20.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 364 TNRLDLGSSKLSEQIDRG 381
TN +D+ SKL QID G
Sbjct: 190 TNIVDVHISKLRRQIDEG 207
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 149 (57.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+LLVE+D S R + L Y+ + +G +A IL + DLV+++V MP + G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEA--ILALKQHQFDLVISDVQMPGIGG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ LL+ + H + LPV++M++ ++G + GAVD+L KP L N
Sbjct: 63 LGLLNYLQQHHPK--LPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 149 (57.5 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+LLVE+D S R + L Y+ + +G +A IL + DLV+++V MP + G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEA--ILALKQHQFDLVISDVQMPGIGG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ LL+ + H + LPV++M++ ++G + GAVD+L KP L N
Sbjct: 63 LGLLNYLQQHHPK--LPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|CPS_0081 [details] [associations]
symbol:CPS_0081 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 RefSeq:YP_266849.1
ProteinModelPortal:Q48AR4 STRING:Q48AR4 DNASU:3523347
GeneID:3523347 KEGG:cps:CPS_0081 PATRIC:21463585
HOGENOM:HOG000276492 OMA:CPEEFYC ProtClustDB:CLSK2309571
BioCyc:CPSY167879:GI48-184-MONOMER Uniprot:Q48AR4
Length = 419
Score = 148 (57.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 47/139 (33%), Positives = 74/139 (53%)
Query: 67 MPQEQPQGAMVCWERFLHLRSLK----VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQ 122
+P+E Q A + +R LH + +L+V++ S R+ + LL+ + V A NG+Q
Sbjct: 100 IPKENSQ-AFLYLKRVLHWQQTNNKNTILVVDDSSSARNHIVELLKRRNFNVITANNGVQ 158
Query: 123 AWKILEDLTNH--IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL-VF 178
A LE L H I +V+T++ MP + G+ L ++I TR+ L VI +S S G+
Sbjct: 159 A---LEKLAQHKNIKMVITDLEMPAMDGIELTNEIRRVYTREQLAVIGISGA-SNGIHSA 214
Query: 179 KCLSKGAVDFLVKPIRKNE 197
+ + GA DFL KP E
Sbjct: 215 RFIKNGADDFLRKPFCPEE 233
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 126 (49.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 32/114 (28%), Positives = 64/114 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+KVL+V++ ++R +++ L G+ ++T A +G Q KI+E +H LV+++ MP +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
G+ L + ++ T K I++++ LV K GA + L KP ++++
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 126 (49.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 33/125 (26%), Positives = 64/125 (51%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++KVL+V++ + R +V LLR+ G+ + EA +G A +L+ D V+T+ MP
Sbjct: 3 KNMKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQG--GDFDFVVTDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + ++PV+++++ + G ++VKP LK
Sbjct: 61 GMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLD 120
Query: 204 HVWRR 208
++ R
Sbjct: 121 KIFER 125
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 126 (49.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 32/114 (28%), Positives = 64/114 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+KVL+V++ ++R +++ L G+ ++T A +G Q KI+E +H LV+++ MP +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
G+ L + ++ T K I++++ LV K GA + L KP ++++
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 141 (54.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 34/111 (30%), Positives = 66/111 (59%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+L+V+++ R+++ L+N GY+V +A +G + ++LE+ N + LV+ ++M P + G+
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEE--NEVHLVVLDIMMPKVDGI 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ KI + K +P+IM+S+ M + L+ GA D++ KP EL
Sbjct: 64 HMCMKI---REEKEMPIIMLSAKTQDMDKILG-LTTGADDYVTKPFNPLEL 110
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 125 (49.1 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPCL 145
+KVL+V++ + R + + +EV EA NGL+A LE + N DL+ +V MP +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEA---LEKVLNGEFDLMTVDVNMPKM 57
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G + K+ + +LPVI++S+ K L GA +LVKP+ ++
Sbjct: 58 DGYTFVYKV--REMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 125 (49.1 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPCL 145
+KVL+V++ + R + + +EV EA NGL+A LE + N DL+ +V MP +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEA---LEKVLNGEFDLMTVDVNMPKM 57
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G + K+ + +LPVI++S+ K L GA +LVKP+ ++
Sbjct: 58 DGYTFVYKV--REMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 147 (56.8 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 37/113 (32%), Positives = 64/113 (56%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE+D R + LL+ GYEV +G + K LE H LV+T+ VMP +SG
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLEKQEYH--LVITDLVMPGMSG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +LS++ + N+ VI+++ ++ L GA D+++KP +E K+
Sbjct: 61 IEVLSRVK--QKAPNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKH 111
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 145 (56.1 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANEN 772
DREA V +YR+K+ R F K +RY SRK AE RPRI+G+F ++T EN
Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETEN 332
>TIGR_CMR|SPO_1953 [details] [associations]
symbol:SPO_1953 "phosphate regulon transcriptional
regulatory protein PhoB" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HOGENOM:HOG000034819 KO:K07657
TIGRFAMs:TIGR02154 RefSeq:YP_167188.1 ProteinModelPortal:Q5LS17
GeneID:3193549 KEGG:sil:SPO1953 PATRIC:23377237 OMA:STLMEKP
ProtClustDB:CLSK933701 Uniprot:Q5LS17
Length = 229
Score = 139 (54.0 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 37/109 (33%), Positives = 63/109 (57%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149
VL+VE++ + R V+A L G+ V A NG +A ++++ T I +VL +MP LSG+
Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDI-IVLDWMMPNLSGIE 66
Query: 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ ++ + +++PVIM+S+ + L GA D++VKP EL
Sbjct: 67 VCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVEL 115
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 124 (48.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSG 147
VL+V++ S R VV L++ GY+V EA +G A L LT + L++++V MP + G
Sbjct: 5 VLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDA---LGKLTGQKVHLIISDVNMPNMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ + ++ + K P+IM+++ + + GA ++VKP + ++
Sbjct: 62 ITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQM 112
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 124 (48.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 25/105 (23%), Positives = 60/105 (57%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ + R+++ L N G+E +A +G++ ++LE ++ D+++T++ MP L G
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQ--SNPDVIVTDINMPRLDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+ + ++ + +P++++++ + GA ++VKP
Sbjct: 62 FGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 124 (48.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 25/105 (23%), Positives = 60/105 (57%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ + R+++ L N G+E +A +G++ ++LE ++ D+++T++ MP L G
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQ--SNPDVIVTDINMPRLDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+ + ++ + +P++++++ + GA ++VKP
Sbjct: 62 FGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>TIGR_CMR|GSU_1038 [details] [associations]
symbol:GSU_1038 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_952091.1 ProteinModelPortal:Q74EC5 GeneID:2688721
KEGG:gsu:GSU1038 PATRIC:22024844 OMA:ECALENA
BioCyc:GSUL243231:GH27-1025-MONOMER Uniprot:Q74EC5
Length = 513
Score = 147 (56.8 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 33/105 (31%), Positives = 60/105 (57%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+LLV++D TR ++ L GY V +A +G +A ++ +L+ DLVL ++M P + G
Sbjct: 23 ILLVDDDAVTRKMLRNLFTLSGYRVADAEDGARAVEMFRELSP--DLVLLDIMMPVMDGY 80
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ I +++P+I+M++LD + + GA DF+ KP+
Sbjct: 81 GACAAIRGLPGGEHVPIIIMTALDDANSIGRAFDAGATDFIEKPV 125
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 139 (54.0 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 42/124 (33%), Positives = 70/124 (56%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S VL+VE+D TR ++ +N GY+VTEA +G Q + LE N IDLVL ++ +P
Sbjct: 2 SYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGE 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNELK-NLWQ 203
G+ L ++ S + + +I+++ DS+ + L GA D++ KP+ EL+ +
Sbjct: 60 DGLLLTRELRS---QSEIGIILVTGRTDSIDKIVG-LEMGADDYVTKPVDLRELQVRVKN 115
Query: 204 HVWR 207
+WR
Sbjct: 116 LLWR 119
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 139 (54.0 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 42/124 (33%), Positives = 70/124 (56%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S VL+VE+D TR ++ +N GY+VTEA +G Q + LE N IDLVL ++ +P
Sbjct: 2 SYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGE 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNELK-NLWQ 203
G+ L ++ S + + +I+++ DS+ + L GA D++ KP+ EL+ +
Sbjct: 60 DGLLLTRELRS---QSEIGIILVTGRTDSIDKIVG-LEMGADDYVTKPVDLRELQVRVKN 115
Query: 204 HVWR 207
+WR
Sbjct: 116 LLWR 119
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/114 (28%), Positives = 63/114 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+KVL+V++ ++R ++ L+ G+ ++T A +G Q KI+ +H LV+++ MP +
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
G+ LL + ++ K I++++ LV K + GA + L KP ++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/114 (30%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+VE+D R + L Y EA +G A L+ + H+D+V+++V M +SG
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALK--SQHVDIVISDVQMGGMSG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
++LL I +H NLPV++M++ ++ + + GA +++ KP L N+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/114 (30%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+VE+D R + L Y EA +G A L+ + H+D+V+++V M +SG
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALK--SQHVDIVISDVQMGGMSG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
++LL I +H NLPV++M++ ++ + + GA +++ KP L N+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/113 (26%), Positives = 59/113 (52%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S K+L+V++ + R +V A L++ Y+VT A +G +A + + D +LT+ MP +
Sbjct: 2 SKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCS--SQRFDFILTDQNMPRM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ L+ + P+IM+++ + + + GA ++VKP +L
Sbjct: 60 DGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>TIGR_CMR|DET_0130 [details] [associations]
symbol:DET_0130 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034820
RefSeq:YP_180880.1 ProteinModelPortal:Q3ZA69 STRING:Q3ZA69
GeneID:3230504 KEGG:det:DET0130 PATRIC:21607349 OMA:QIVQAKN
ProtClustDB:CLSK837608 BioCyc:DETH243164:GJNF-130-MONOMER
Uniprot:Q3ZA69
Length = 123
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/115 (27%), Positives = 61/115 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+L+ ++++ R +V +L Y++ +A NG +A K E DL+L ++M P L
Sbjct: 4 MKILIADDEEHVRQLVCGILDK-DYQIVQAKNGEEAVK--ESREQDFDLILMDIMMPKLD 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK--GAVDFLVKPIRKNELK 199
G+A + K +P++M++ + + K LS+ GA ++ KP EL+
Sbjct: 61 GLAACCMLKGDKQTSAIPIVMLTGVGYE--LNKKLSQQLGADGYITKPFSPRELR 113
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/113 (26%), Positives = 59/113 (52%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S K+L+V++ + R +V A L++ Y+VT A +G +A + + D +LT+ MP +
Sbjct: 2 SKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCS--SQRFDFILTDQNMPRM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ L+ + P+IM+++ + + + GA ++VKP +L
Sbjct: 60 DGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>TIGR_CMR|GSU_0149 [details] [associations]
symbol:GSU_0149 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 PROSITE:PS50109 HSSP:P06143 RefSeq:NP_951211.1
ProteinModelPortal:Q74GU5 GeneID:2687911 KEGG:gsu:GSU0149
PATRIC:22023046 HOGENOM:HOG000135524 OMA:ISHKFRT
ProtClustDB:CLSK827668 BioCyc:GSUL243231:GH27-183-MONOMER
Uniprot:Q74GU5
Length = 371
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 86 RSLKVLLVENDDST-RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-P 143
R LK +LV +D+S R + A L+ GY V +A +G +A ++ E ID++LT+VM P
Sbjct: 11 RGLKSILVVDDESVIRDLCAKALK--GYRVLQAGDGEEALRLFE--RGGIDVILTDVMMP 66
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
L+G+ LL ++ + L VI+M+ ++ L A DF+ KP+ +LK
Sbjct: 67 KLNGIELLRRLK--EMEPTLVVIVMTGYAEKDIILNALKADADDFITKPLNLLQLK 120
>UNIPROTKB|Q9KQ67 [details] [associations]
symbol:VC_2135 "Sigma-54 dependent response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 37/114 (32%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+VE+D+ R + L GYE EA A +L+ ++ +D+V+++V M + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDA--LLKLKSHSVDIVVSDVQMAGMGG 64
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
+ALL I H NLPV++M++ ++ + GA+D++ KP L N+
Sbjct: 65 LALLRSIKQHWP--NLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>TIGR_CMR|VC_2135 [details] [associations]
symbol:VC_2135 "flagellar regulatory protein C" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0030092 "regulation of
flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 37/114 (32%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+VE+D+ R + L GYE EA A +L+ ++ +D+V+++V M + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDA--LLKLKSHSVDIVVSDVQMAGMGG 64
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
+ALL I H NLPV++M++ ++ + GA+D++ KP L N+
Sbjct: 65 LALLRSIKQHWP--NLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 120 (47.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ S R +V+ L++ GYEV A +G +A + + D+++++V MP ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ + K P++M+++ S + + GA +LVKP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 120 (47.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/112 (30%), Positives = 63/112 (56%)
Query: 89 KVLLVENDDSTRHVVAALLR-NCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
K+L+V++ R ++ LL+ N +EV EA NG++A + ++L I + L MP +
Sbjct: 4 KILVVDDAMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQPDI-VTLDITMPEMD 62
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ L +I+ K + V++ S++ G+V + GA DF+VKP + + +
Sbjct: 63 GLEALKEII--KIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQADRV 112
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 120 (47.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ S R +V+ L++ GYEV A +G +A + + D+++++V MP ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ + K P++M+++ S + + GA +LVKP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 138 (53.6 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 769
+REA V +Y++K+ R F KK+RY+ RK AEQRPRI+G+FV++T+
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
Score = 45 (20.9 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 405 ITKIIDSDKEDTEYEASNKPSKILDINSKSIKD 437
+ ++ D D+E+ E + N SK D + + KD
Sbjct: 240 LKRVKDEDEEEEEAKCENGGSKDSDREASNDKD 272
Score = 44 (20.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 320 QDHEERCENFAKRSRDLDVGGQR----SLDLQLEY 350
++ E +CEN + D + + SL L+L+Y
Sbjct: 249 EEEEAKCENGGSKDSDREASNDKDRKTSLFLRLDY 283
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 127 LEDLTNHIDLVLTEVMPCL 145
LEDLT ++ +L E CL
Sbjct: 196 LEDLTMDVESLLEEEQLCL 214
>TIGR_CMR|CPS_1828 [details] [associations]
symbol:CPS_1828 "DNA-binding response regulator TorR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07772 ProtClustDB:PRK10766
RefSeq:YP_268558.1 ProteinModelPortal:Q484F7 SMR:Q484F7
STRING:Q484F7 GeneID:3519027 KEGG:cps:CPS_1828 PATRIC:21466805
OMA:NILWRIS BioCyc:CPSY167879:GI48-1898-MONOMER Uniprot:Q484F7
Length = 240
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 38/121 (31%), Positives = 67/121 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+VE++ TR + ++ GY V+EA N Q +LE+ +HIDLV+ ++ +P G+
Sbjct: 6 ILVVEDEAITRAKLVGYFQHAGYRVSEAENKSQMMVVLEN--HHIDLVMLDINLPDEDGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNEL----KN-LW 202
+ + SH N+ +++++ DS+ + L GA D++ KP EL KN LW
Sbjct: 64 MITRNLRSHS---NIGIVLVTGRTDSIDKIIG-LEMGADDYVTKPFELRELLVRVKNILW 119
Query: 203 Q 203
+
Sbjct: 120 R 120
>ASPGD|ASPL0000043398 [details] [associations]
symbol:AN9048 species:162425 "Emericella nidulans"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003018 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00065 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:BN001307
GO:GO:0005622 GO:GO:0023014 EMBL:AACD01000168 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:XP_682317.1
ProteinModelPortal:Q5ARN2 EnsemblFungi:CADANIAT00007805
GeneID:2868194 KEGG:ani:AN9048.2 HOGENOM:HOG000178140 OMA:EVPIYSP
OrthoDB:EOG415KNG Uniprot:Q5ARN2
Length = 1109
Score = 147 (56.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 36/117 (30%), Positives = 63/117 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+V++++ V+A L+ GY+ T ATNGL A+ ++ N +VL ++ MP + G
Sbjct: 988 KVLIVDDNEINLKVLARLMSKLGYQHTTATNGLVAFTKYKESPNSFSMVLMDISMPVMDG 1047
Query: 148 VALLSKIMSHKTRKNLP---VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
+ I S++ K L V ++ + S + + L G ++LVKP+ +L L
Sbjct: 1048 IDATRNIRSYEWEKQLSSVKVFAVTGIGSAAMQHEALMAGVDEYLVKPLSLGQLGKL 1104
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
KVL+V++ + ++ A L + Y V ATNG+ A KI E+ H D++L +VM P + G
Sbjct: 4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEE--KHPDIILLDVMMPEMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMG-LVFKCLSKGAVDFLVKPIRKNEL 198
++ S+ +P++M+++LD+ LS GA DFL KPI L
Sbjct: 62 YETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTAL 113
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 148 (57.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 39/115 (33%), Positives = 68/115 (59%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVLTEV-MPC 144
++ +L+V++D S ++ ALLR GY V A +G QA LE + + DLVL +V M
Sbjct: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQA---LEQVREQVFDLVLCDVRMAE 61
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+ G+A L +I + +PV++M++ S+ + L GA+D+L+KP+ + L+
Sbjct: 62 MDGIATLKEIKA--LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
Score = 38 (18.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 726 EAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANEN 772
E ++RQ R + S ++ E P + G F+++ A N
Sbjct: 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN 334
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 37/111 (33%), Positives = 59/111 (53%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+LLVE+D S V+ L G+ VT G +++ N D+VL +VM P L+G+
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKK--NTTDIVLLDVMLPGLNGI 61
Query: 149 ALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ I H+ K +P+IM+++ D V L GA D+++KP+R L
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIG-LEAGADDYVIKPVRPRAL 111
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 145 (56.1 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 43/133 (32%), Positives = 71/133 (53%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139
E+ + +R L VLLV++ +R VV+ LL + G+ VT A +G++A + DLVL
Sbjct: 538 EKSVAVRPLSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIG--REAFDLVLM 595
Query: 140 EV-MPCLSGVALLSKIMSHKTR--KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKN 196
+V MP + G + I + + LP+I +++ G CL GA D+L KP+ +
Sbjct: 596 DVQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFS 655
Query: 197 ELKNLWQHVWRRC 209
EL+ + + R C
Sbjct: 656 ELRRV---ISRHC 665
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 138 (53.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 723 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT-ANEN 772
A+REA V +YR+K+ R F K +RY SRK AE RPRI+G+F ++T + EN
Sbjct: 227 AEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSREN 277
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 140 (54.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 32/112 (28%), Positives = 66/112 (58%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
K+L V++D+ + ++ LL + G+ A +G QA +LE H+DL++++ +M ++G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALLE--REHVDLLISDLIMEGMNG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+ LL ++ + N+PVI++++ S+ + + +GA D+L KP L+
Sbjct: 63 LELLDRV--RERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLR 112
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 117 (46.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 32/112 (28%), Positives = 58/112 (51%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KV++V++ + R ALL G + EA+NG++A + L +DL L ++ MP + G
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
L+ +I +P +M+S+ + + GA ++VKP+ EL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 117 (46.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 42/129 (32%), Positives = 66/129 (51%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEVM-P 143
+K L+VE+D +R ++ LL + G E AT+G +QA+++ D DLV ++M P
Sbjct: 1 MKTLIVEDDFISRKIMKELLTSLG-ECDIATDGEEAVQAFRLALDEHRPYDLVCMDIMMP 59
Query: 144 CLSGVALLSKI------MSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLVKPIRKN 196
+ G L +I M + + VIM ++LD V + +G A +LVKPI K
Sbjct: 60 NMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITKQ 119
Query: 197 EL-KNLWQH 204
L K + H
Sbjct: 120 RLMKEIRSH 128
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 117 (46.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 32/112 (28%), Positives = 58/112 (51%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KV++V++ + R ALL G + EA+NG++A + L +DL L ++ MP + G
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
L+ +I +P +M+S+ + + GA ++VKP+ EL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 139 (54.0 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 725 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENT 773
REA+V +Y++K+ R F KK+RYQ RK A+QRPR++G+FVR+ NE+T
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRP-NEST 430
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 140 (54.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KV +V+++ ++ L + GY A +G++A LE DLVL ++ MP + G
Sbjct: 5 KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALE--RESFDLVLLDIRMPRMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+ +L +I +L VIMM++ S + + + KGAVD++ KP +++K
Sbjct: 63 IEVLERIRDRWP--DLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMK 112
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 129 (50.5 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSRE 776
+REA V +YR+KK R F K +RY SRK AE RPRI+G+F ++ E + E
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEE 329
Score = 47 (21.6 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 94 ENDDSTRHVVAALLRNCGYEVTEATNG 120
+ND+ R V + LL N G + NG
Sbjct: 120 DNDEDDREVASWLLPNPGKNIGNQNNG 146
Score = 42 (19.8 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 592 ASSVLV-HPRSTQEQLTQ 608
AS + V HPR+T+E + Q
Sbjct: 244 ASDITVQHPRTTKETIDQ 261
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 128 (50.1 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 717 IDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 767
I++ + REA+V +Y++K+ R F KK+RYQ RK A++RPR +G+FV++
Sbjct: 143 IEEKRNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 137 (53.3 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 31/118 (26%), Positives = 68/118 (57%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQA-WKIL---EDLTNH--IDLVLTEV 141
+ +L+V+++ V+ +L+ GY+ + N Q ++ + +D + H IDL+L ++
Sbjct: 1 MSILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDI 60
Query: 142 M-PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
M P + G+ + ++ + K++P+I +++L+ + + L GA+D++ KPI K EL
Sbjct: 61 MMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVEL 118
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 135 (52.6 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 34/115 (29%), Positives = 62/115 (53%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
++ L++++ + R + L+ +E EA +GL+ +K L L N +DLVL ++ MP
Sbjct: 2 AMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTL--LNNKVDLVLCDLEMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ G LS S ++LP+I+++S + + L +GA D++ KP EL
Sbjct: 60 RMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 135 (52.6 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 34/115 (29%), Positives = 62/115 (53%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
++ L++++ + R + L+ +E EA +GL+ +K L L N +DLVL ++ MP
Sbjct: 2 AMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTL--LNNKVDLVLCDLEMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ G LS S ++LP+I+++S + + L +GA D++ KP EL
Sbjct: 60 RMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>UNIPROTKB|P0ACZ8 [details] [associations]
symbol:cusR "CusR-Pasp DNA binding transcriptional
activator" species:83333 "Escherichia coli K-12" [GO:0001114
"protein-DNA-RNA complex" evidence=IDA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0046688 "response
to copper ion" evidence=IDA;IMP] [GO:0010628 "positive regulation
of gene expression" evidence=IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS;IDA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0032993 "protein-DNA complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0046688 GO:GO:0010628
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160
EMBL:U82598 eggNOG:COG0745 GO:GO:0001046 GO:GO:0032993
EMBL:AF245661 EMBL:U82579 PIR:A64790 RefSeq:NP_415103.1
RefSeq:YP_488858.1 ProteinModelPortal:P0ACZ8 SMR:P0ACZ8
IntAct:P0ACZ8 EnsemblBacteria:EBESCT00000001137
EnsemblBacteria:EBESCT00000017813 GeneID:12930897 GeneID:945003
KEGG:ecj:Y75_p0558 KEGG:eco:b0571 PATRIC:32116310 EchoBASE:EB3612
EcoGene:EG13851 HOGENOM:HOG000034815 KO:K07665 OMA:AMTEPYD
ProtClustDB:PRK09836 BioCyc:EcoCyc:G6319-MONOMER
BioCyc:ECOL316407:JW0560-MONOMER Genevestigator:P0ACZ8
GO:GO:0001114 TIGRFAMs:TIGR01387 Uniprot:P0ACZ8
Length = 227
Score = 131 (51.2 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 39/150 (26%), Positives = 72/150 (48%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+L+VE++ T + L G+ V A NGL + + +T DL++ ++M P ++
Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA--MTGDYDLIILDIMLPDVN 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G ++ + S K +P++++++L ++ K L GA D+LVKP EL + +
Sbjct: 59 GWDIVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116
Query: 207 RRCHXXXXXXXXXCTQTQKSIKSKNVENSG 236
RR + S+ V SG
Sbjct: 117 RRGAAVIIESQFQVADLMVDLVSRKVTRSG 146
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 115 (45.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 27/113 (23%), Positives = 64/113 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGY---EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
VL+V++ + R +++ LR G E+ EA +G++ +L + +DL+L+++ MP +
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKS--VDLILSDINMPNM 61
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ + + ++ + P++M+++ ++ + +S GA D + KP ++L
Sbjct: 62 DGLEFIKQARANGHKA--PIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 134 (52.2 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 37/122 (30%), Positives = 66/122 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
L+VL+ + D S ++ L+ Y+VT +A L + N DL + +V
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGD 101
Query: 148 V-ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
+ LS+I S +LP+I++S DS+ V K + GA D+L+KPIR +L+ +++H+
Sbjct: 102 IFRFLSEIGSEM---DLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 207 RR 208
++
Sbjct: 159 KK 160
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 131 (51.2 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 44/125 (35%), Positives = 68/125 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+LLV++D ++ LL G+ V A +G QA ++L+D IDL+L +VM P +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDD---SIDLLLLDVMMPKKNG 59
Query: 148 VALLSKI-MSHKTRKNLPVIMMSSLDS-MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ L + +H+T PVIM+++ S + V L GA D+L KP EL + +
Sbjct: 60 IDTLKALRQTHQT----PVIMLTARGSELDRVLG-LELGADDYLPKPFNDRELVARIRAI 114
Query: 206 WRRCH 210
RR H
Sbjct: 115 LRRSH 119
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 137 (53.3 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 37/115 (32%), Positives = 64/115 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+ VL+V+++ S R +A LL GY V +A + +A LE T DLV+++V MP L
Sbjct: 3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLERKT--YDLVISDVKMPGLD 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
G+ LL +I + + V++M++ + + + GA D++ KP + E+K L
Sbjct: 61 GITLLGRIK--EMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKIL 113
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 140 (54.3 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+V++ R ++ L G + EATNG++A I++ + ID +L ++ MP + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
L +I + +NLP+I ++S S + + G +++ KP L+N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 140 (54.3 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+V++ R ++ L G + EATNG++A I++ + ID +L ++ MP + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
L +I + +NLP+I ++S S + + G +++ KP L+N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 140 (54.3 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+V++ R ++ L G + EATNG++A I++ + ID +L ++ MP + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
L +I + +NLP+I ++S S + + G +++ KP L+N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>UNIPROTKB|Q9KM66 [details] [associations]
symbol:cqsS "CAI-1 autoinducer sensor kinase/phosphatase
CqsS" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 139 (54.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 38/114 (33%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ S R A LL GYEV +A +G + K +E + +IDLVL ++ MP + G
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHME--SQNIDLVLMDIEMPNVGG 626
Query: 148 VALLSKIM-SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ I S KN+P+I + +S + + G DF+VKP ++ L N
Sbjct: 627 LEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>TIGR_CMR|VC_A0522 [details] [associations]
symbol:VC_A0522 "sensor histidine kinase/response
regulator LuxN" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 139 (54.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 38/114 (33%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ S R A LL GYEV +A +G + K +E + +IDLVL ++ MP + G
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHME--SQNIDLVLMDIEMPNVGG 626
Query: 148 VALLSKIM-SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ I S KN+P+I + +S + + G DF+VKP ++ L N
Sbjct: 627 LEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>UNIPROTKB|Q52879 [details] [associations]
symbol:cheY1 "CheY1" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06657 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61833 ProteinModelPortal:Q52879
IntAct:Q52879 PATRIC:23630491 ProtClustDB:CLSK881447 Uniprot:Q52879
Length = 121
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/111 (22%), Positives = 60/111 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
+VL V++ + R+++ L N G+E +A +G++ + L+ T + D+++T++ MP L G
Sbjct: 4 RVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLD--TANPDVIVTDINMPRLDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ + + + +P++++++ + GA ++VKP +L
Sbjct: 62 FGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKPFDPTKL 112
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/108 (32%), Positives = 57/108 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHID--LVLTEV-MPCL 145
+LLVE++ + LR G + V A +G QA L + +D LVL ++ +P +
Sbjct: 6 ILLVEDNPDDEFLALRALRRHGLQDVVVARDGEQAVGQLFEAAPPLDPWLVLLDLKLPKM 65
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+G+ +L I S + ++ PVI++SS V KC G + +L KPI
Sbjct: 66 NGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPI 113
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+ VL+V++D + +V+ LL + EVT A+ G +A I+ T D+V+T+ MP ++
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVRKTT--FDMVITDFSMPGMN 61
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G+ L + + + +LPV+M++ + L+ G L KP+ L +H
Sbjct: 62 GLELAAAVK--ELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFS 119
Query: 207 RR 208
RR
Sbjct: 120 RR 121
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/112 (28%), Positives = 63/112 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++VL++++D+ R+ V ++ G+E +A NG A I + + D+VL + MP L
Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENG--AIGIEKFVREKPDMVLVDYHMPALD 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ + +I + + +P+I+++ + + K L GA DF +KPI+ +L
Sbjct: 59 GLDTVERI--REIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDL 108
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/111 (31%), Positives = 63/111 (56%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
H ++VL+V+ +R +A+ L N GY VT +G +A + E D+++T++ +
Sbjct: 3 HATEIQVLVVDESAPSRAFIASTLENGGYIVTSVASGEEA--VHEVNAAPFDILVTDINL 60
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
P +SG+ LL K++ +L V++++S S K L GA DF++KP+
Sbjct: 61 PGMSGLNLL-KLLKDSF-PDLEVVIVTSNASSFTAIKALRLGAYDFIIKPV 109
>UNIPROTKB|Q0BZW4 [details] [associations]
symbol:pleD "Response regulator PleD" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 GO:GO:0004871 SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02488
HOGENOM:HOG000167204 RefSeq:YP_760979.1 ProteinModelPortal:Q0BZW4
STRING:Q0BZW4 GeneID:4287816 KEGG:hne:HNE_2284 PATRIC:32217411
OMA:APRTINA BioCyc:HNEP228405:GI69-2306-MONOMER Uniprot:Q0BZW4
Length = 455
Score = 127 (49.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 31/105 (29%), Positives = 59/105 (56%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
++L+V++ ++ R ++ A L + V A NG QA ++ + I ++L +MP + G
Sbjct: 4 RILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVAQRENPEI-ILLDVMMPGMDGY 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ ++ + T +PV+M+++L M K L+ GA DFL KP+
Sbjct: 63 EVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPV 107
Score = 54 (24.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/68 (25%), Positives = 35/68 (51%)
Query: 319 CQDHEERCENFAKRSRDLDVGGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQI 378
C H++ AK R L++G + + ++ Q + T++T +D+ L +++
Sbjct: 233 CDPHDK-----AKALRGLEIGASDMITIPIDRQELAARIRTQTRRTRYIDI----LRQRV 283
Query: 379 DRGQLDLN 386
DRG L+L+
Sbjct: 284 DRG-LELS 290
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 124 (48.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
ID+VLT+ MP ++G LL I + + +PV++MSS + + +CL+ GA DF++KP
Sbjct: 84 IDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKP 143
Query: 193 IRKNELKNL 201
++ N+++ L
Sbjct: 144 LKMNDVQRL 152
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 87 SLKVLLVENDDSTRHVVAALLR-NCG 111
+++VL+V++ R VV LLR +CG
Sbjct: 5 AVRVLVVDDSPVDRRVVELLLRAHCG 30
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/121 (28%), Positives = 65/121 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L++E++ + V+ L + GY+V TNG + L DL+L ++M P + G
Sbjct: 4 KILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTA--LEKDFDLILLDLMLPEMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ ++ + KT ++MM++ DS+ + L +GA D++VKP EL + ++R
Sbjct: 62 FEITRRLQAEKTTY---IMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFR 118
Query: 208 R 208
R
Sbjct: 119 R 119
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 44/125 (35%), Positives = 67/125 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+LLV++D ++ LL G+ V A +G QA +L+D IDL+L +VM P +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNG 59
Query: 148 VALLSKI-MSHKTRKNLPVIMMSSLDS-MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ L + +H+T PVIM+++ S + V L GA D+L KP EL + +
Sbjct: 60 IDTLKALRQTHQT----PVIMLTARGSELDRVLG-LELGADDYLPKPFNDRELVARIRAI 114
Query: 206 WRRCH 210
RR H
Sbjct: 115 LRRSH 119
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 34/122 (27%), Positives = 66/122 (54%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
++KVL+V+++++ R ++ L GYEV A G +A + L++ T H+ + MP +
Sbjct: 4 TIKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEETFHL-AIFDIKMPGID 62
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G+ LL + + + +NL VI+++ ++ + GA D+L KP EL+ Q +
Sbjct: 63 GIELLQR--ARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAY 120
Query: 207 RR 208
+
Sbjct: 121 EK 122
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 127 (49.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
++L++T+ MP ++G LL K+ +++PV++MSS + + +CL +GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKP 133
Query: 193 IRKNELKNLWQHVWR 207
+R +L L H+ +
Sbjct: 134 VRLADLNKLKPHMMK 148
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL 127
VL V++ R ++ LL+ +VT +G +A + L
Sbjct: 11 VLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFL 48
>TIGR_CMR|SPO_0022 [details] [associations]
symbol:SPO_0022 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008152
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
SUPFAM:SSF81606 RefSeq:YP_165295.1 ProteinModelPortal:Q5LWH9
GeneID:3194721 KEGG:sil:SPO0022 PATRIC:23373275
HOGENOM:HOG000291805 OMA:ERKWGDL ProtClustDB:CLSK933114
Uniprot:Q5LWH9
Length = 445
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
+VL+V++ R ++++ L+ G+EV EA +G +A +I DLVL++ VMP +SG
Sbjct: 42 RVLVVDDSRLQRRILSSSLKKWGFEVIEAESGEEAMEICARAMP--DLVLSDWVMPGMSG 99
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
V + + I+++S V + L GA DFL+KP+ +EL+
Sbjct: 100 VDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDFLIKPVSSDELR 151
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/112 (29%), Positives = 63/112 (56%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+LL++++++ R + LL+ G+ V A G +A++ L T D+V+T++ +P SG
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLTRDT--FDIVITDLFLPDASG 63
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+ +L K+ VI+++ S K + +GA D++ KP+ +ELK
Sbjct: 64 IDILKKVKEDAPLTE--VILITGHASAETAVKAMKEGAFDYITKPLNFDELK 113
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/110 (27%), Positives = 65/110 (59%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+V+++ R ++ +L YE T A G +A +L++ D++LT++ M +SG+
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDE--REFDVILTDLKMQGMSGM 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
LL ++++ ++ +IMM++ ++ + + KGA D+L KP+ ++ L
Sbjct: 63 ELLERLLAADPQQC--IIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTL 110
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 34/113 (30%), Positives = 65/113 (57%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILE-DLTNHIDLVLTEVM-PCL 145
+K+L+V+++ ++ L GY+V EA +G++A +I++ +L DLV+ ++M P +
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELP---DLVILDIMLPGM 57
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
SG+ + I +++ +P+IM+S+ L GA D++VKP EL
Sbjct: 58 SGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPREL 110
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 132 (51.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 768
DREA V +YR+KK R F K +RY++RK AE RPRI+G+F +++
Sbjct: 325 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 369
Score = 45 (20.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 500 VNSLEIIKKGSDCGIQSHSNGD-PLNQSSNGGSNNMDM 536
V+S ++ K SD +++N D N ++N S+N M
Sbjct: 140 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGM 177
Score = 42 (19.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 229 SKNVENSGNNTGSND 243
SK+ +N+ NN +ND
Sbjct: 147 SKDSDNNNNNNNNND 161
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 127 (49.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 38/126 (30%), Positives = 68/126 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+L+V+++ S R+++ L GYEV A +G + +LE D+++ +VM P
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGRE---VLERWNEGPDVLILDVMLPDTD 57
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL----KNLW 202
G LL ++ K R ++PV+M+++ M L GA D++ KP EL KN+
Sbjct: 58 GYELL-RLFREKDR-DIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115
Query: 203 QHVWRR 208
+ V ++
Sbjct: 116 RRVKKK 121
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 132 (51.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 768
DREA V +YR+KK R F K +RY++RK AE RPRI+G+F +++
Sbjct: 337 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 381
Score = 45 (20.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 500 VNSLEIIKKGSDCGIQSHSNGD-PLNQSSNGGSNNMDM 536
V+S ++ K SD +++N D N ++N S+N M
Sbjct: 152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGM 189
Score = 42 (19.8 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 229 SKNVENSGNNTGSND 243
SK+ +N+ NN +ND
Sbjct: 159 SKDSDNNNNNNNNND 173
>TIGR_CMR|SO_0549 [details] [associations]
symbol:SO_0549 "chemotaxis protein CheY/response regulator
receiver domain protein" species:211586 "Shewanella oneidensis
MR-1" [GO:0004871 "signal transducer activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06657
KO:K03413 RefSeq:NP_716185.2 ProteinModelPortal:Q8EJB8
GeneID:1168418 KEGG:son:SO_0549 PATRIC:23520780
HOGENOM:HOG000221832 OMA:SEANDAH ProtClustDB:CLSK905805
Uniprot:Q8EJB8
Length = 265
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 35/120 (29%), Positives = 67/120 (55%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
+ ++VL+V++ R+V+ + N G + +TEA +G QA +++ N DL++T+ M
Sbjct: 142 VHDVRVLVVDDSRMARNVIKRTIGNLGIKLITEAEDGAQAIELMRH--NMFDLIITDYNM 199
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPIRKNELKNL 201
P + G+AL I S + ++P++M+SS ++ +S+ V+ L KP +K L
Sbjct: 200 PSVDGLALTQFIRSESQQSHVPILMVSS-EANDAHLSNVSQAGVNALCDKPFEPKLVKQL 258
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 38/127 (29%), Positives = 69/127 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY---EVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+K+L++E+D T +V + G+ + EA++G ++E T D ++ ++ +P
Sbjct: 1 MKILIIEDDAQTTEIVKLSFK-LGWPDVRLLEASSGESGLAMVE--TAKPDAIILDIGLP 57
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+SG +L +I + LPVI+++ + + K LS GA D+LVKP R+ EL +
Sbjct: 58 DISGYEVLRQI---RLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMELLARIK 114
Query: 204 HVWRRCH 210
+ RR H
Sbjct: 115 AISRRLH 121
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 137 (53.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 43/159 (27%), Positives = 78/159 (49%)
Query: 50 DVK-DGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLR 108
DV+ E A T V+ P E + +V E + +++V++D + L+
Sbjct: 739 DVQLSNLEVAATVDEVI--PAEVIEETIVLPEANNVFQEKTIMIVDDDHRNIFALQNALK 796
Query: 109 NCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVIM 167
+ A NGL+ +IL++ TN IDL+L ++M P + G + I + +P+I
Sbjct: 797 KQHANIITAQNGLECLEILKNNTN-IDLILMDIMMPNMDGYETMEHIRMNLGLHEIPIIA 855
Query: 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
+++ KCLS GA D++ KP+ ++L ++ VW
Sbjct: 856 LTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMS-VW 893
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 110 (43.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/113 (25%), Positives = 61/113 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 63 IEILKRMKV--IDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 110 (43.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/116 (25%), Positives = 60/116 (51%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
++L+VE+++S + + LL + GY V T+G A + DL++ ++M P + G
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIA--ATPPDLIILDIMLPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ I + + +++PV+M+++ S K L GA ++ KP + + + Q
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQ 118
>UNIPROTKB|Q1D948 [details] [associations]
symbol:MXAN_2606 "Sensor histidine kinase/response
regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0023014
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 RefSeq:YP_630825.1
ProteinModelPortal:Q1D948 IntAct:Q1D948 STRING:Q1D948
GeneID:4101819 KEGG:mxa:MXAN_2606 PATRIC:22647741 OMA:EMEIEIY
ProtClustDB:CLSK955309 BioCyc:MXAN246197:GIWU-2583-MONOMER
Uniprot:Q1D948
Length = 970
Score = 137 (53.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/113 (32%), Positives = 62/113 (54%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCL 145
S ++++VE+D R +A LL Y V EA NG + L DL+L++VM P +
Sbjct: 597 SPRIMVVEDDPEIRSFLARLLAQ-HYRVMEAINGDDGRQ--RALRERPDLILSDVMMPVM 653
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
SG+ +L+ + + ++PVI++++ + + L GA D+L KP NEL
Sbjct: 654 SGLQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNEL 706
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 133 (51.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/105 (27%), Positives = 65/105 (61%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+ ++++S R V++ LR G+ V A +G +A ++++ +N DL + ++ MP +G
Sbjct: 5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQ--SNEYDLAILDIKMPGFTG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+ LL K+ + + +L +++M++ SM + + +GA D++ KP
Sbjct: 63 LELLDKV--RELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKP 105
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 130 (50.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 34/110 (30%), Positives = 62/110 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGV 148
+L+V+++ R ++ L++ GY+V A NG +A +I + +V+T+ VMP + G+
Sbjct: 18 ILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFNK--GYYPIVMTDWVMPEMDGL 75
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L I + + + +I+++S DS V L GA ++LVKP + EL
Sbjct: 76 ELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAHQVEL 125
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 130 (50.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 718 DKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 768
+K ++REA V +YR K+ R F KK+RY+ RK A++RPR++G+FVR++
Sbjct: 271 EKRVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
>UNIPROTKB|Q9A5I5 [details] [associations]
symbol:pleD "Response regulator PleD" species:190650
"Caulobacter crescentus CB15" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
ProtClustDB:PRK09581 Uniprot:Q9A5I5
Length = 454
Score = 132 (51.5 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEVM-PC 144
S ++L+V++ ++ ++ A L YEV+ A +G A + DL D++L +VM P
Sbjct: 2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP---DIILLDVMMPG 58
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ G + K+ T +++PV+++++LD G + L GA DFL KPI
Sbjct: 59 MDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>TAIR|locus:2018344 [details] [associations]
symbol:AT1G04500 "AT1G04500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:DQ446226 EMBL:AB493431
IPI:IPI00533670 RefSeq:NP_171944.2 UniGene:At.42446
EnsemblPlants:AT1G04500.1 GeneID:839510 KEGG:ath:AT1G04500
TAIR:At1g04500 HOGENOM:HOG000239716 InParanoid:Q1PFY7 OMA:SPSCSFL
PhylomeDB:Q1PFY7 ProtClustDB:CLSN2680683 Genevestigator:Q1PFY7
Uniprot:Q1PFY7
Length = 386
Score = 124 (48.7 bits), Expect = 3.3e-05, Sum P(2) = 3.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 715 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 774
N++ K R+ + +Y +K+ ER F KK++Y RK LA+ RPR+RG+F + +
Sbjct: 278 NKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPN 337
Query: 775 REPECS 780
R+ CS
Sbjct: 338 RQA-CS 342
Score = 51 (23.0 bits), Expect = 3.3e-05, Sum P(2) = 3.2e-05
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 504 EIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNA 543
E+ + CG ++N + SN GSN D +NA
Sbjct: 43 EVTSASNGCGYVENNNTNNFPDKSNSGSNQ-DHEDNNDNA 81
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 123 (48.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
I+L++T+ MP ++G LL K+ +++PV++MSS + + +CL +GA +F +KP
Sbjct: 72 INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKP 131
Query: 193 IRKNELKNLWQHVWR 207
++ +L L H+ +
Sbjct: 132 VKLADLTKLKPHMMK 146
Score = 41 (19.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL 127
VL V++ R ++ LL+ +VT +G +A + L
Sbjct: 11 VLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFL 48
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 35/122 (28%), Positives = 68/122 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+LLV++++ ++ L GY +AT+GL+A K++E D++L +VM P +
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQ--KDFDIILLDVMMPNMD 59
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G +I + N+P+IM+++ + + K L+ GA D++ KP ++ L + +
Sbjct: 60 GWDTCYQI---RQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116
Query: 207 RR 208
RR
Sbjct: 117 RR 118
>TAIR|locus:2195518 [details] [associations]
symbol:AT1G63820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002684 GenomeReviews:CT485782_GR
HOGENOM:HOG000090374 ProtClustDB:CLSN2681537 EMBL:AK176159
IPI:IPI00542615 RefSeq:NP_176567.2 UniGene:At.50956
EnsemblPlants:AT1G63820.1 GeneID:842685 KEGG:ath:AT1G63820
TAIR:At1g63820 eggNOG:NOG240378 InParanoid:Q67ZF8 OMA:TQRNFTK
PhylomeDB:Q67ZF8 ArrayExpress:Q67ZF8 Genevestigator:Q67ZF8
Uniprot:Q67ZF8
Length = 293
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 716 RIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSR 775
R+ + +R+ ++KYR K+T+R F K ++Y RK LA+ RPR+RG+F R N+
Sbjct: 183 RVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFAR---NDEVFE 239
Query: 776 EPE 778
P+
Sbjct: 240 NPK 242
>UNIPROTKB|O06143 [details] [associations]
symbol:pdtaR "Probable transcriptional regulatory protein
pdtaR" species:1773 "Mycobacterium tuberculosis" [GO:0000160
"phosphorelay signal transduction system" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001789
InterPro:IPR005561 Pfam:PF00072 Pfam:PF03861 PROSITE:PS50110
PROSITE:PS50921 SMART:SM00448 SMART:SM01012 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 EMBL:BX842577 GO:GO:0003723
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 GO:GO:0031564 PIR:H70558 RefSeq:NP_216142.1
RefSeq:NP_336118.1 RefSeq:YP_006515015.1 PDB:1S8N PDB:1SD5
PDBsum:1S8N PDBsum:1SD5 ProteinModelPortal:O06143 SMR:O06143
PRIDE:O06143 EnsemblBacteria:EBMYCT00000001621
EnsemblBacteria:EBMYCT00000071028 GeneID:13316405 GeneID:885080
GeneID:924202 KEGG:mtc:MT1662 KEGG:mtu:Rv1626 KEGG:mtv:RVBD_1626
PATRIC:18125418 TubercuList:Rv1626 eggNOG:COG3707
HOGENOM:HOG000034822 KO:K07183 OMA:MDRRLTM ProtClustDB:CLSK791290
EvolutionaryTrace:O06143 InterPro:IPR008327 PIRSF:PIRSF036382
Uniprot:O06143
Length = 205
Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+VL+ E++ R +A +LR GYE+ EA +G +A ++ E + DLV+ +V MP
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE--LHKPDLVIMDVKMPRRD 72
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ S+I S ++ P++++++ LV + GA+ +LVKP ++L
Sbjct: 73 GIDAASEIAS---KRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDL 121
>TIGR_CMR|CPS_1208 [details] [associations]
symbol:CPS_1208 "phosphate regulon response regulator
PhoB" species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
[GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 eggNOG:COG0745 HOGENOM:HOG000034819
KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154 RefSeq:YP_267951.1
ProteinModelPortal:Q486R4 SMR:Q486R4 STRING:Q486R4 GeneID:3522949
KEGG:cps:CPS_1208 PATRIC:21465661
BioCyc:CPSY167879:GI48-1289-MONOMER Uniprot:Q486R4
Length = 233
Score = 125 (49.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 35/114 (30%), Positives = 62/114 (54%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAW-KILEDLTNHIDLVLTE-VMPC 144
S K+L+VE++ R +++ +L G+ EA + QA KI E + DL+L + ++P
Sbjct: 2 SRKILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEP---YPDLILLDWMLPG 58
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+GV+L K+ ++ +N+P+IM+++ K G DF+ KP EL
Sbjct: 59 GTGVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKEL 112
>TIGR_CMR|CPS_4166 [details] [associations]
symbol:CPS_4166 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 Pfam:PF00072 Pfam:PF02518 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
Gene3D:3.30.565.10 SUPFAM:SSF55874 RefSeq:YP_270818.1
ProteinModelPortal:Q47WK4 STRING:Q47WK4 GeneID:3522071
KEGG:cps:CPS_4166 PATRIC:21471193
BioCyc:CPSY167879:GI48-4176-MONOMER Uniprot:Q47WK4
Length = 508
Score = 135 (52.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKI-LEDLTNHIDLVLTEV 141
+H L VL+V++ ++ L+++ Y V A N A KI L DL DL+L ++
Sbjct: 150 VHCGELNVLVVDDIADNIAIIKELIKD-KYRVKAALNAKTAMKICLSDLPP--DLILLDI 206
Query: 142 M-PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
M P + G+ L ++ + +N+ VI +++L V K LS GAVD++ KPI
Sbjct: 207 MMPEVDGLTLCKQLKENPLTQNIVVIFLTALSETEDVVKGLSLGAVDYITKPI 259
Score = 42 (19.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 467 VLRRSDSSAFSRYNTASNVN--KGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGD 521
++ + AF + + N+N K G I A +N+L++ +GS I S S D
Sbjct: 384 IIASKNIEAFDNIDESININCDKKLLGII-FACLYLNALDVAPRGSKVSITSASYQD 439
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 130 (50.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 725 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 769
REA V++YR+K+ R F KK+RY+ RK AE+RPR++G+FV++++
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSS 401
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 130 (50.8 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 722 FAD--REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 769
F D REA V++YR+K+ R F KK+RY+ RK AE+RPR++G+FV++ +
Sbjct: 356 FGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAS 405
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 124 (48.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 41/120 (34%), Positives = 65/120 (54%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
VL+VE+++S +A LLR G+E T T+G A + E D+VL ++M P +SG
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAA--LAEFDRAGADIVLLDLMLPGMSGT 61
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+ ++ + R ++PVIM+++ DS L GA D++ KP EL + V RR
Sbjct: 62 DVCKQL---RARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 124 (48.7 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 29/111 (26%), Positives = 66/111 (59%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+L++++D ++A LRN GY + +A +G +A +++ T +DL++ ++M P +G+
Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMIS--TYEVDLMILDIMMPKRNGL 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ ++ + T +P++M+S+ + M + ++ GA D+++KP EL
Sbjct: 63 EVCQEVRENNT---VPILMLSAKAEDMDKILGLMT-GADDYMIKPFNPLEL 109
>UNIPROTKB|Q74CL9 [details] [associations]
symbol:GSU1654 "Response receiver-modulated cyclic
diguanylate phosphodiesterase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10
InterPro:IPR006675 TIGRFAMs:TIGR00277 HOGENOM:HOG000266481
RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9 GeneID:2687011
KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE ProtClustDB:CLSK828468
BioCyc:GSUL243231:GH27-1639-MONOMER Uniprot:Q74CL9
Length = 349
Score = 128 (50.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+L V++++ R ++ L GY+ +A + +A +L L N ++L L ++M P SGV
Sbjct: 5 ILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVL--LNNRVELALLDIMMPGTSGV 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
LL +I K + V+M++++ M +C+ GA D+++KP
Sbjct: 63 DLLKEIK--KISADTVVLMVTAISDMETAMRCIHLGADDYILKP 104
>TIGR_CMR|GSU_1654 [details] [associations]
symbol:GSU_1654 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001789 InterPro:IPR003607
InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 InterPro:IPR006675 TIGRFAMs:TIGR00277
HOGENOM:HOG000266481 RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9
GeneID:2687011 KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE
ProtClustDB:CLSK828468 BioCyc:GSUL243231:GH27-1639-MONOMER
Uniprot:Q74CL9
Length = 349
Score = 128 (50.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+L V++++ R ++ L GY+ +A + +A +L L N ++L L ++M P SGV
Sbjct: 5 ILTVDDEEMIRDLLVTALSREGYDCFQAGSADEARDVL--LNNRVELALLDIMMPGTSGV 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
LL +I K + V+M++++ M +C+ GA D+++KP
Sbjct: 63 DLLKEIK--KISADTVVLMVTAISDMETAMRCIHLGADDYILKP 104
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 107 (42.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 32/125 (25%), Positives = 60/125 (48%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 107 (42.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/117 (26%), Positives = 65/117 (55%)
Query: 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVA 149
L+V++ R V + ++R+ G+ VTEA +G +A K+ + + D +L + MP ++G+
Sbjct: 5 LVVDDSRVVRKVASRIVRDLGFSVTEAGDGAEALKMCRE--SMPDAILLDWNMPTMNGID 62
Query: 150 LLSKIMSHKTRKNLPVIMMSSLDS-MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
L + + K +P I+ S+++ + + L GA +F++KP + L++ + V
Sbjct: 63 FLRALRREEGGK-VPRIVFCSIENDPEHINEALRSGADEFIMKPFDADILESKFAEV 118
>TIGR_CMR|GSU_1302 [details] [associations]
symbol:GSU_1302 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845 RefSeq:NP_952355.1
ProteinModelPortal:Q74DL4 GeneID:2686509 KEGG:gsu:GSU1302
PATRIC:22025379 HOGENOM:HOG000131064 OMA:DQADAFE
ProtClustDB:CLSK743117 BioCyc:GSUL243231:GH27-1286-MONOMER
Uniprot:Q74DL4
Length = 835
Score = 133 (51.9 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 49/168 (29%), Positives = 80/168 (47%)
Query: 42 LNDSSIAEDVKDGCEGAVTASAVLQM-PQEQPQG---AMVCWERFLHLRSLKVLLVENDD 97
L +IA + + G GA T S L + P + PQ A E+ L SL+VLLVE++D
Sbjct: 528 LMGGTIAVESEPG-SGA-TFSVCLPLEPADGPQFHDCAAENQEQDRELPSLEVLLVEDND 585
Query: 98 STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM- 155
R V LL VT TNG +A +L D +LV ++ MP + G+ I
Sbjct: 586 LNRTVAVGLLTALNQRVTAVTNGREAIDVLRD--RDFELVFMDISMPEMDGIEATWAIRR 643
Query: 156 --SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
+ + ++ P++ +++ +CL +L KP+ + EL+ +
Sbjct: 644 GEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREELRRM 691
>TIGR_CMR|CPS_2473 [details] [associations]
symbol:CPS_2473 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_269189.1 ProteinModelPortal:Q481T0
STRING:Q481T0 GeneID:3519581 KEGG:cps:CPS_2473 PATRIC:21468015
ProtClustDB:CLSK869033 BioCyc:CPSY167879:GI48-2536-MONOMER
Uniprot:Q481T0
Length = 242
Score = 124 (48.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 38/131 (29%), Positives = 72/131 (54%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
L K+L+V++D+ TR V+++ N GY+V+ AT +A ++L + +DL+L ++ MP
Sbjct: 2 LSDTKILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELL--ILGTVDLILLDIRMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMS-SLDSMGLVFKCLSKGAVDFLVKPIRKNEL---- 198
G+ L ++ + + +I+++ S D + + L GA +++ KP E+
Sbjct: 60 GKDGLTLTREL---RVNNEVGIILVTGSQDEVDRLIG-LECGADEYVTKPFNPREILARA 115
Query: 199 KNLWQHVWRRC 209
KNL + V R C
Sbjct: 116 KNLIRRV-RLC 125
>TIGR_CMR|SO_4428 [details] [associations]
symbol:SO_4428 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
HSSP:P06143 RefSeq:NP_719949.1 ProteinModelPortal:Q8E961
GeneID:1172025 KEGG:son:SO_4428 PATRIC:23528509 OMA:PNQVISR
ProtClustDB:CLSK907640 Uniprot:Q8E961
Length = 225
Score = 123 (48.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 35/113 (30%), Positives = 63/113 (55%)
Query: 88 LKVLLVENDDST-RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDL-VLTEVMPCL 145
+K+LLVE+D +T ++V L G+ + A++G Q +L+ + DL +L ++P L
Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQ-GHNIETASDGHQG--LLQATSGQYDLLILDRMLPQL 57
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ LL+ + + T PV+++S+L + K L G D++ KP +EL
Sbjct: 58 DGLKLLAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSEL 108
>UNIPROTKB|Q9KSB0 [details] [associations]
symbol:VC_1349 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50894
SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
InterPro:IPR013656 Pfam:PF08448 PIR:H82211 RefSeq:NP_230993.1
ProteinModelPortal:Q9KSB0 DNASU:2614803 GeneID:2614803
KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI ProtClustDB:CLSK794089
Uniprot:Q9KSB0
Length = 1331
Score = 135 (52.6 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+LLVE+++ + V LL++ G V A +G +A + LE DLVL ++ MP + G+
Sbjct: 994 LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHAD--FDLVLMDMQMPVMDGI 1051
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGL-VFKCLSKGAVDFLVKPIRKNELKNLWQH 204
I ++ +LP++ M++ ++M + + +CL G D L KPI ++ + +H
Sbjct: 1052 TATEHIRANPRWHSLPIVAMTA-NAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107
>TIGR_CMR|VC_1349 [details] [associations]
symbol:VC_1349 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF01627
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 PROSITE:PS50894 SMART:SM00073 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 PIR:H82211
RefSeq:NP_230993.1 ProteinModelPortal:Q9KSB0 DNASU:2614803
GeneID:2614803 KEGG:vch:VC1349 PATRIC:20081774 OMA:NDSARNI
ProtClustDB:CLSK794089 Uniprot:Q9KSB0
Length = 1331
Score = 135 (52.6 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+LLVE+++ + V LL++ G V A +G +A + LE DLVL ++ MP + G+
Sbjct: 994 LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHAD--FDLVLMDMQMPVMDGI 1051
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGL-VFKCLSKGAVDFLVKPIRKNELKNLWQH 204
I ++ +LP++ M++ ++M + + +CL G D L KPI ++ + +H
Sbjct: 1052 TATEHIRANPRWHSLPIVAMTA-NAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
++LL+++D ++ LL G+++T A +G Q ++ L DL+L +VM P L+G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELA--LATDYDLILLDVMLPKLNG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
+L + HK PV+M+++ D + V L GA D+L KP EL + +
Sbjct: 61 FEVLRALRQHK---QTPVLMLTARGDEIDRVVG-LEIGADDYLPKPFNDRELIARIRAII 116
Query: 207 RRCH 210
RR H
Sbjct: 117 RRSH 120
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 129 (50.5 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 35/110 (31%), Positives = 62/110 (56%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+V+++ ++++ L G +V A NGL A K+LE IDLV+++ MP + G
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQ--EDIDLVISDWRMPGMDGP 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
LL +I + LPVI+M++ ++ + + GA D++ KP +EL
Sbjct: 63 QLLGEIKQRYPQ--LPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
>UNIPROTKB|Q74CN0 [details] [associations]
symbol:GSU1643 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 126 (49.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 35/110 (31%), Positives = 57/110 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGV 148
VL+ E++ R V+ LR GY+V A +G A ++ + + LV+T+ VMP + G
Sbjct: 12 VLIAEDNALLRAVLEGNLREIGYDVVVAIDGKDALARIQ--SGYFPLVITDWVMPVMDGP 69
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L + S +I+++S DS + L GA ++LVKP+ EL
Sbjct: 70 ELCRAVRSLGLEHYTYLILLTSRDSKESIISGLEAGADEYLVKPVTPEEL 119
>TIGR_CMR|GSU_1643 [details] [associations]
symbol:GSU_1643 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 126 (49.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 35/110 (31%), Positives = 57/110 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGV 148
VL+ E++ R V+ LR GY+V A +G A ++ + + LV+T+ VMP + G
Sbjct: 12 VLIAEDNALLRAVLEGNLREIGYDVVVAIDGKDALARIQ--SGYFPLVITDWVMPVMDGP 69
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L + S +I+++S DS + L GA ++LVKP+ EL
Sbjct: 70 ELCRAVRSLGLEHYTYLILLTSRDSKESIISGLEAGADEYLVKPVTPEEL 119
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 35/112 (31%), Positives = 61/112 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+++LLVE+D + L G+ V + G A L + +H D+V+ ++ +P +
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALA-VPSH-DMVILDLGLPDID 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ +L +I + K +LPVI++++ DS+ K L GA D+L KP EL
Sbjct: 59 GLLVLKEIRAKKN--DLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQEL 108
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 122 (48.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEVM-PCLS 146
++L+VE+++ VV L GYE A G +A +E N + DL+L +VM P +S
Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEA---MEKFGNGNWDLILLDVMLPNIS 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ +L +I +P+I++++ DS+ L +GA D++ KP + EL
Sbjct: 61 GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEEL 110
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 132 (51.5 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 767
DREA V +YR+KK R F K +RY SRK AE+RPRI+G+F ++
Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
Score = 37 (18.1 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 234 NSGNNTGSND 243
NSG N+G+N+
Sbjct: 146 NSGKNSGNNN 155
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 105 (42.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 26/112 (23%), Positives = 63/112 (56%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + + GY+ +A NG QA I++ ++ DLV+ ++ +P + G
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKK--DNPDLVVLDMKIPGMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+ +L + + +++ VI+M++ + ++ + GA+ KP +E++
Sbjct: 62 IEILKHVK--EIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TIGR_CMR|SO_3196 [details] [associations]
symbol:SO_3196 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
ProtClustDB:CLSK907046 Uniprot:Q8ECE7
Length = 367
Score = 131 (51.2 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 38/110 (34%), Positives = 60/110 (54%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
L + +L VE+D R +VA L G +V +A +G Q ++ D++L ++ MP
Sbjct: 3 LNDVSILWVEDDPVFRQIVATFLSGRGAQVVQAGDGEQG--LIHFKQQRFDIILADLSMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
L G+ +L K MS K +P I++S + M V + L GA D+LVKP+
Sbjct: 61 KLGGLDML-KEMS-KLEPLVPSIVISGNNVMADVVEALRIGACDYLVKPV 108
Score = 38 (18.4 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 386 NSESPSSKLKYEAAKLAGAITKIIDSDKEDTEY 418
N P++K+ Y K + + IDS ++Y
Sbjct: 169 NISYPAAKVDYSLFKSSDISSYFIDSTMVGSDY 201
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 390 PSSKLKYEAAKLAGAITKIID 410
P+S + Y AAK+ ++ K D
Sbjct: 166 PASNISYPAAKVDYSLFKSSD 186
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 33/112 (29%), Positives = 61/112 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQA-WKILEDLTNHIDLVLTEVMPCLS 146
+K+LL+E++ T+ V L GY + ++G + L+D ++ ++L ++P +
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMD 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G +L + +T K PVI +++ DS+ + L GA D+LVKP +EL
Sbjct: 59 GWQILQTL---RTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSEL 107
>TAIR|locus:2168083 [details] [associations]
symbol:AT5G59990 "AT5G59990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015475 EMBL:AY924872
IPI:IPI00537727 RefSeq:NP_200807.1 UniGene:At.55631
EnsemblPlants:AT5G59990.1 GeneID:836121 KEGG:ath:AT5G59990
TAIR:At5g59990 HOGENOM:HOG000064609 InParanoid:Q9FJD8 OMA:RESSTVW
PhylomeDB:Q9FJD8 ProtClustDB:CLSN2686501 ArrayExpress:Q9FJD8
Genevestigator:Q9FJD8 Uniprot:Q9FJD8
Length = 241
Score = 119 (46.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSREPE 778
+++ + KYR K+ R F K+++Y+ RK LA+ RPRIRG+F R N+ S++ +
Sbjct: 162 EKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFAR---NDEISQQEQ 213
Score = 43 (20.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 496 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAF 544
A++ V+ G + G S S P + S G S M +++N F
Sbjct: 55 AAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQRSVSSHNGF 103
>TIGR_CMR|SO_0859 [details] [associations]
symbol:SO_0859 "sensory box histidine kinase/response
regulator" species:211586 "Shewanella oneidensis MR-1" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR000700 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
InterPro:IPR013655 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 Pfam:PF08447 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 PROSITE:PS50885
PROSITE:PS50894 SMART:SM00073 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
RefSeq:NP_716490.1 PDB:3LIC PDBsum:3LIC ProteinModelPortal:Q8EII0
DNASU:1168706 GeneID:1168706 KEGG:son:SO_0859 PATRIC:23521379
HOGENOM:HOG000296662 OMA:IAKPIEV ProtClustDB:CLSK905976
EvolutionaryTrace:Q8EII0 Uniprot:Q8EII0
Length = 1765
Score = 134 (52.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 47/153 (30%), Positives = 67/153 (43%)
Query: 48 AEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALL 107
A + DG A+ S +L + + Q + E L L+ ++LLVE+++ V L
Sbjct: 1387 ASRLLDGIMNALGRSGILPVRRHQDN---IAPELLLPLKGKRILLVEDNEMNLEVATEFL 1443
Query: 108 RNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165
G ++ ATNG A L+ L DLVL + MP + G I LPV
Sbjct: 1444 EQVGIILSIATNGQIA---LDKLAQQSFDLVLMDCQMPVMDGYQATKAIRQRPELAQLPV 1500
Query: 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
I M++ G CL G D + KPI N L
Sbjct: 1501 IAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLL 1533
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 353 ESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLN-SESPSSKLKYEAAK-LAGAITKIID 410
E +++ T K +L SSKL+E + R QL+L+ SE+ +++ + + L +I + I+
Sbjct: 1622 EDAVRMAHTLKGLAGNLSSSKLAE-LAR-QLELHLSENADYQVELDQIQILVASICEAIE 1679
Query: 411 SDK---EDTEYE-ASNKPSKILDINSKSIKDS 438
K E+T A + P L K ++ S
Sbjct: 1680 KAKPQFEETSTSTAEHLPKDALIAALKQLRQS 1711
>TIGR_CMR|CPS_4418 [details] [associations]
symbol:CPS_4418 "sigma-54 dependent DNA-binding response
regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 PROSITE:PS00676
RefSeq:YP_271067.1 ProteinModelPortal:Q47VV5 STRING:Q47VV5
GeneID:3519684 KEGG:cps:CPS_4418 PATRIC:21471677 OMA:CESIMES
BioCyc:CPSY167879:GI48-4427-MONOMER Uniprot:Q47VV5
Length = 450
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 38/114 (33%), Positives = 60/114 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLS 146
+L+ ++D+ R + LL GY++ EA N + I+E DLVL ++ S
Sbjct: 6 ILIADDDEDIRLALNLLLSAQGYQIIEAANAKEI--IIESNRQQPDLVLLDMNFSRDTTS 63
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
G L+ I+ N+PVI+M++ S+ L + L KGA DF+ KP K +L N
Sbjct: 64 GQEGLA-ILEQLQPLNIPVILMTAWGSIELAVEGLQKGANDFIEKPWNKLKLLN 116
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 33/115 (28%), Positives = 63/115 (54%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+R K+L+V+++ R + L+ GY+V A NG A +I+ + DLVL ++ +P
Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVRE--EQPDLVLLDIQLP 58
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+SG+ L KI + + + VIM+++ ++ + GA D++ KP +E+
Sbjct: 59 GISGLEALEKIKEYD--EEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM 111
>TIGR_CMR|APH_0196 [details] [associations]
symbol:APH_0196 "nitrogen assimilation regulatory protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K13599
ProtClustDB:CLSK749342 RefSeq:YP_504819.1 ProteinModelPortal:Q2GLD2
STRING:Q2GLD2 GeneID:3930623 KEGG:aph:APH_0196 PATRIC:20948964
OMA:MHARILI BioCyc:APHA212042:GHPM-230-MONOMER Uniprot:Q2GLD2
Length = 462
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 36/112 (32%), Positives = 60/112 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VL+V+++ R ++ +LR+ Y A +GL A K+ + D+VL ++ S +
Sbjct: 11 EVLIVDDEADLRAMIQDILRDDNYVTRVAADGLSAMKLAYE--REPDVVLLDIWLKGSDI 68
Query: 149 ALLSKIMSHKTR-KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
LS + K R +LPVIM+S ++ K L GA D++ KP +N LK
Sbjct: 69 DGLSVLEKLKERYPSLPVIMISGHGNIATAVKSLHIGAYDYIEKPFTENRLK 120
>TIGR_CMR|BA_3261 [details] [associations]
symbol:BA_3261 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845560.1 RefSeq:YP_019897.1 RefSeq:YP_029285.1
ProteinModelPortal:Q81NE3 DNASU:1089115
EnsemblBacteria:EBBACT00000011389 EnsemblBacteria:EBBACT00000014025
EnsemblBacteria:EBBACT00000020758 GeneID:1089115 GeneID:2818827
GeneID:2853015 KEGG:ban:BA_3261 KEGG:bar:GBAA_3261 KEGG:bat:BAS3028
OMA:FELCKKM ProtClustDB:CLSK916983
BioCyc:BANT260799:GJAJ-3090-MONOMER
BioCyc:BANT261594:GJ7F-3193-MONOMER Uniprot:Q81NE3
Length = 225
Score = 117 (46.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPC 144
++ + +LL ++D R ++ L+ G++V EA +G A ++LE H+ +V +MP
Sbjct: 1 MKMIHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIV-DIMMPF 59
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ G L +I + ++PVI++++ D + K G D++VKP E+
Sbjct: 60 VDGYTLCEEIRKYH---DIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEV 110
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/67 (20%), Positives = 33/67 (49%)
Query: 544 FIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLCSPRQVLLDKRDDLVASSVLVHPRST- 602
F A L+ +S+ + LH ++ ++ C+ + +LL ++ + S + +P T
Sbjct: 112 FRMKALLRRYQMLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTF 171
Query: 603 -QEQLTQ 608
+E+L +
Sbjct: 172 SREELIE 178
Score = 40 (19.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 322 HEERC-ENFAKRSRDLDVGGQRSLDLQLE 349
H +R + F+KR+ D + R L +LE
Sbjct: 195 HVKRLRDRFSKRTDDFQITTVRGLGYKLE 223
>TIGR_CMR|GSU_2314 [details] [associations]
symbol:GSU_2314 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
PROSITE:PS50894 SMART:SM00073 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845
HSSP:P06143 RefSeq:NP_953363.2 GeneID:2687347 KEGG:gsu:GSU2314
PATRIC:22027483 HOGENOM:HOG000144277 ProtClustDB:CLSK2306793
BioCyc:GSUL243231:GH27-2320-MONOMER Uniprot:Q74AN8
Length = 1025
Score = 131 (51.2 bits), Expect = 0.00013, P = 0.00013
Identities = 40/128 (31%), Positives = 62/128 (48%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+++LLVE++ + R V +++ G A NG +A +L T DLVL +V MP +
Sbjct: 768 VRILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLA--TTPYDLVLMDVQMPVMD 825
Query: 147 GVAL---LSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
G + + S +PVI +++ G KCL G D+L KPI + L +
Sbjct: 826 GFEATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAEMLV 885
Query: 204 HVW--RRC 209
W RRC
Sbjct: 886 K-WLPRRC 892
>TIGR_CMR|DET_0304 [details] [associations]
symbol:DET_0304 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181052.1
ProteinModelPortal:Q3Z9P7 GeneID:3230335 KEGG:det:DET0304
PATRIC:21607681 OMA:KMELIAR ProtClustDB:CLSK741611
BioCyc:DETH243164:GJNF-304-MONOMER Uniprot:Q3Z9P7
Length = 223
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 34/113 (30%), Positives = 66/113 (58%)
Query: 89 KVLLVENDDSTRHVVAALLRNC--GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
++L+VE+D T ++ + E+ A G + ++LE+ + HI ++L +P ++
Sbjct: 3 RILIVEDDFKTADAFVSIFKLTWPNAEIFTAQTGWEGIRLLEEYSPHI-IILDIGLPDIN 61
Query: 147 GVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G ++S+I H T ++P++++++ D + +V K L GA DF+ KP RK EL
Sbjct: 62 GFEVISEIR-HFT--DIPIMVITARTDELDVV-KALELGANDFISKPPRKMEL 110
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+KVL+VE++ + L YEV A NG + K+ D DL++ +VM P
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALD--KGYDLIVLDVMLPKKD 58
Query: 147 GVALLSKIMSHKTRKN-LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G++++ ++ + RKN PV+M+++ DS+ + L G+ D+L KP EL
Sbjct: 59 GLSVVREL---RERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAEL 108
>TIGR_CMR|SO_0351 [details] [associations]
symbol:SO_0351 "DNA-binding response regulator, LuxR
family" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000792
InterPro:IPR001789 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196
PRINTS:PR00038 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P11470 KO:K07693 RefSeq:NP_715991.1
ProteinModelPortal:Q8EJV5 GeneID:1168228 KEGG:son:SO_0351
PATRIC:23520405 OMA:LRQVHRG ProtClustDB:CLSK905708 Uniprot:Q8EJV5
Length = 198
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 33/120 (27%), Positives = 64/120 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+LL E+ R +AALL G + +T+A++G +A +L+ H DL+LT++ MP
Sbjct: 1 MKILLAEDQAMVRGALAALLTLAGGFTITQASDGDEALTLLKQ--QHFDLLLTDIEMPGR 58
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+G+ L + + ++ V+++++ G + + + G FL+K L + Q V
Sbjct: 59 TGLELAAWLKEQHSQTK--VVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVSSIQQV 116
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+L+V++D R ++ LR G+E + A +G + IL L +DLV+ ++M P G+
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAIL--LKQAVDLVILDIMMPGDDGL 64
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
L ++ ++ T +P++M++++ L GA D+L KP EL + + RR
Sbjct: 65 TLCRQMRANST---IPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRR 121
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 36/124 (29%), Positives = 64/124 (51%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAW-KILEDLTNHIDLVLTE-VMPC 144
S ++L+VE++ R ++ +L GY+ EA + A K+ E DLVL + ++P
Sbjct: 2 SRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFP---DLVLLDWMLPG 58
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
SG+ L+ + + +N+PV+M+++ + L GA D++ KP EL +
Sbjct: 59 GSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKA 118
Query: 205 VWRR 208
V RR
Sbjct: 119 VIRR 122
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 36/124 (29%), Positives = 64/124 (51%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAW-KILEDLTNHIDLVLTE-VMPC 144
S ++L+VE++ R ++ +L GY+ EA + A K+ E DLVL + ++P
Sbjct: 2 SRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFP---DLVLLDWMLPG 58
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
SG+ L+ + + +N+PV+M+++ + L GA D++ KP EL +
Sbjct: 59 GSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKA 118
Query: 205 VWRR 208
V RR
Sbjct: 119 VIRR 122
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 31/123 (25%), Positives = 61/123 (49%)
Query: 88 LKVLLVENDDST--RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
+K +L +D +T + + +LLR G++V T G +A +L DL++T++ MP
Sbjct: 1 MKKILALDDSATMLQSIKISLLRK-GHQVATFTKGSEALDMLGK--EKFDLIITDLNMPE 57
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
+ G+ + K+ + K PVI++++ + GA ++ KP +L + +
Sbjct: 58 MDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEK 117
Query: 205 VWR 207
V R
Sbjct: 118 VAR 120
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 31/123 (25%), Positives = 61/123 (49%)
Query: 88 LKVLLVENDDST--RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
+K +L +D +T + + +LLR G++V T G +A +L DL++T++ MP
Sbjct: 1 MKKILALDDSATMLQSIKISLLRK-GHQVATFTKGSEALDMLGK--EKFDLIITDLNMPE 57
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
+ G+ + K+ + K PVI++++ + GA ++ KP +L + +
Sbjct: 58 MDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEK 117
Query: 205 VWR 207
V R
Sbjct: 118 VAR 120
>TIGR_CMR|SPO_1023 [details] [associations]
symbol:SPO_1023 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:YP_166275.1 ProteinModelPortal:Q5LUN0 GeneID:3195651
KEGG:sil:SPO1023 PATRIC:23375339 OMA:AGVSRFM ProtClustDB:CLSK933415
Uniprot:Q5LUN0
Length = 126
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCL 145
S +VLL+E++ + + LL G++V +G A I+ T DLV+ +VM P
Sbjct: 2 SRRVLLIEDEPNIAEAIRFLLSRDGWQVETHADGADAVDIIT--TALPDLVILDVMLPGK 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
SG+ +L ++ ++LPV+M+++ G F+ KP E+
Sbjct: 60 SGMDILRELREQAATQDLPVLMLTARGQSRDRDMAEKAGVSRFMTKPFSNTEV 112
>TIGR_CMR|SO_1228 [details] [associations]
symbol:SO_1228 "torcad operon transcriptional regulatory
protein TorR" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 RefSeq:NP_716851.1 ProteinModelPortal:Q8EHJ3
SMR:Q8EHJ3 GeneID:1169054 KEGG:son:SO_1228 PATRIC:23522112
OMA:QHIDLVM Uniprot:Q8EHJ3
Length = 236
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
VL+V+++ R + GY V EA +G Q W E HIDL++ ++ +P + G+
Sbjct: 5 VLVVDDEVVIRARLKGYFEKEGYRVVEAADGEQMW--YEFNRQHIDLIMLDINLPGVDGL 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL----KNLWQH 204
+L ++ S R ++ +I++S D L GA D++ KP EL KNL
Sbjct: 63 SLTRELRS---RSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNL--- 116
Query: 205 VWR 207
+WR
Sbjct: 117 LWR 119
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 125 (49.1 bits), Expect = 0.00018, P = 0.00018
Identities = 29/117 (24%), Positives = 64/117 (54%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
+++K+ +V+++ R ++ L GY+ + +A K+L + + +V++++ MP
Sbjct: 3 QAMKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLG--SEYPGIVISDIKMPG 60
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
+ G+ L K+M + +LPVIM++ + + + + GA DFL KP + + +L
Sbjct: 61 MDGMQFLKKLMGADS--SLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDL 115
>TIGR_CMR|GSU_0842 [details] [associations]
symbol:GSU_0842 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR003018 InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00065 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:NP_951899.2 GeneID:2685412
KEGG:gsu:GSU0842 PATRIC:22024443 HOGENOM:HOG000275881
ProtClustDB:CLSK828051 BioCyc:GSUL243231:GH27-843-MONOMER
Uniprot:Q74EW7
Length = 754
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 35/142 (24%), Positives = 67/142 (47%)
Query: 61 ASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNG 120
A + + P+ P GA + ++L V++++ +LR GY+V T
Sbjct: 610 AEQIEEQPEAAPDGAPAGGDE-------RILYVDDEEDLVATTGEMLRRLGYDVVATTGS 662
Query: 121 LQAWKILEDLTNHIDLVLTE-VMPCLSGVALLSKIMSHKTRKNLPVIMMSSL---DSMGL 176
++A K+ DL++T+ MP L+G L + + R ++PV++ S D +
Sbjct: 663 VEALKLFTAQPGLFDLIITDQTMPLLTGTELTRAL--RRLRPDVPVLLCSGFIDQDERTI 720
Query: 177 VFKCLSKGAVDFLVKPIRKNEL 198
+ + S G D L KP+ ++E+
Sbjct: 721 LEQARSAGIADVLRKPVDRDEM 742
>UNIPROTKB|Q74CQ4 [details] [associations]
symbol:cheY-4 "Response receiver CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P04042 RefSeq:NP_952670.1 ProteinModelPortal:Q74CQ4
GeneID:2687423 KEGG:gsu:GSU1619 PATRIC:22026087 OMA:DIICMDM
ProtClustDB:CLSK828443 BioCyc:GSUL243231:GH27-1579-MONOMER
Uniprot:Q74CQ4
Length = 119
Score = 102 (41.0 bits), Expect = 0.00019, P = 0.00019
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
KVL+V++ S + +L G ++V NG++A ++ + T H D++ ++ MP +
Sbjct: 3 KVLIVDDSISVARQLDKILSESGEFQVVGHGKNGMEAIRMHQ--TEHPDIICMDMNMPGM 60
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF-KCLSKGAVDFLVKPIRK-NELKNL 201
G+ L +++ KN+ V+M++SL +G F + L GA + KP N LK L
Sbjct: 61 DGLTALRTLVA--LDKNIKVVMVTSLGGVGDKFTEALRLGARTVISKPFEADNVLKIL 116
>TIGR_CMR|GSU_1619 [details] [associations]
symbol:GSU_1619 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P04042 RefSeq:NP_952670.1 ProteinModelPortal:Q74CQ4
GeneID:2687423 KEGG:gsu:GSU1619 PATRIC:22026087 OMA:DIICMDM
ProtClustDB:CLSK828443 BioCyc:GSUL243231:GH27-1579-MONOMER
Uniprot:Q74CQ4
Length = 119
Score = 102 (41.0 bits), Expect = 0.00019, P = 0.00019
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
KVL+V++ S + +L G ++V NG++A ++ + T H D++ ++ MP +
Sbjct: 3 KVLIVDDSISVARQLDKILSESGEFQVVGHGKNGMEAIRMHQ--TEHPDIICMDMNMPGM 60
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF-KCLSKGAVDFLVKPIRK-NELKNL 201
G+ L +++ KN+ V+M++SL +G F + L GA + KP N LK L
Sbjct: 61 DGLTALRTLVA--LDKNIKVVMVTSLGGVGDKFTEALRLGARTVISKPFEADNVLKIL 116
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 35/122 (28%), Positives = 66/122 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
+++L++N++ ++ A+L + GY V T +A + E DLV++++ MP + G
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEA--VEEFKAGDWDLVVSDIKMPGMDG 63
Query: 148 VALLSKIMSHKTRKNL-PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL----KNLW 202
+ +L +I K + L PVIM+++ ++ + L +GA D + KP EL KN
Sbjct: 64 LEVLQRI---KAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNAL 120
Query: 203 QH 204
+H
Sbjct: 121 KH 122
>TIGR_CMR|GSU_1927 [details] [associations]
symbol:GSU_1927 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR000700 InterPro:IPR001054
InterPro:IPR001789 InterPro:IPR013655 Pfam:PF00072 Pfam:PF08447
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00091 SMART:SM00448
InterPro:IPR001610 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 Gene3D:3.20.20.450 InterPro:IPR001633 SMART:SM00052
SUPFAM:SSF141868 PROSITE:PS50883 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 HOGENOM:HOG000136246
RefSeq:NP_952976.2 GeneID:2688352 KEGG:gsu:GSU1927 PATRIC:22026719
BioCyc:GSUL243231:GH27-2001-MONOMER Uniprot:Q74BV5
Length = 708
Score = 127 (49.8 bits), Expect = 0.00021, P = 0.00021
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S V+++++D+ R + + G+ V EA +G+ A ++ L I ++L VMP +
Sbjct: 10 SATVMIIDDDELVRVLARRAVEQGGFAVIEAGDGVTAIEMFSRLVPDI-ILLDVVMPGMG 68
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
G + +I + +++M+SLD G + + GA DFL KPI
Sbjct: 69 GFDVCRRIRRLPGGDRVQILVMTSLDDTGAIDEAYEAGASDFLAKPI 115
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHID-LVLTEVMPCL 145
S+++L+V++D + R + L GY V A +G++A ++ ++ D LVL +MP L
Sbjct: 2 SVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIA--SDRPDALVLDVMMPRL 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G+ + ++ T +LP++++++ DS+ L GA D+L KP EL + +
Sbjct: 60 DGLEVCRQLRG--TGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRAL 117
Query: 206 WRR 208
RR
Sbjct: 118 LRR 120
>TIGR_CMR|GSU_1265 [details] [associations]
symbol:GSU_1265 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
HOGENOM:HOG000217841 RefSeq:NP_952318.1 ProteinModelPortal:Q74DQ0
GeneID:2685795 KEGG:gsu:GSU1265 PATRIC:22025301 OMA:SHITHEF
ProtClustDB:CLSK743116 BioCyc:GSUL243231:GH27-1218-MONOMER
Uniprot:Q74DQ0
Length = 445
Score = 123 (48.4 bits), Expect = 0.00030, P = 0.00030
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L+VL+ E+ + R ++AA LR ++V A NG +A + + DLVL ++ MP +
Sbjct: 323 LRVLVAEDAEDIRLLIAAFLRGASHQVCSAGNGQEALDMF--MAEDFDLVLMDIQMPVMD 380
Query: 147 GVALLSKIMS---HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G + + R +PV+ +++ K + G L KPIRK+ L
Sbjct: 381 GYTATRALREWERQRGRTPVPVVALTACAEKSDSLKTIEAGCTSHLSKPIRKDTL 435
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+VE+++ + LL GYE + GL A I + N DL+L ++ +P +SG
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ + + ++PV+ +++ G + G ++ KPI
Sbjct: 62 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 107
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+L+ E+D R +A +L GY V A NG A +L+ D ++ ++M P L
Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVA--LLKYQQEQPDFIILDIMMPELD 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G ++ +I H + PVI +S+ + + V L GA D++ KP +E++ + +
Sbjct: 59 GYSVCKEIRKHD--EQTPVIFLSAKGEELDKVLG-LELGADDYINKPFGIHEVRARIKTI 115
Query: 206 WRRC 209
RRC
Sbjct: 116 ARRC 119
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 716 RIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 766
++ + +R+ ++KYR K+ +R F K ++Y RK LA+ RPRIRG+F R
Sbjct: 206 KVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFAR 256
>DICTYBASE|DDB_G0282289 [details] [associations]
symbol:dhkD "histidine kinase D" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
dictyBase:DDB_G0282289 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0005622 GO:GO:0023014 eggNOG:COG2202 SMART:SM00086
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 EMBL:AF361475 EMBL:AF029704
RefSeq:XP_640257.1 HSSP:P0A5Z8 ProteinModelPortal:Q54SP4
EnsemblProtists:DDB0215384 GeneID:8623516 KEGG:ddi:DDB_G0282289
OMA:TIERCAS Uniprot:Q54SP4
Length = 1546
Score = 126 (49.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 42/162 (25%), Positives = 82/162 (50%)
Query: 41 RLNDSS-IAED-VKDGCEGAVTASAVLQMPQEQ-PQGAMVCWERFLHLRSLKVLLVENDD 97
+ N SS IA + +KD + A+ Q E+ + + +H + + VL+VE++
Sbjct: 521 KTNTSSDIASNALKDNMGSIMGVHAIAQQAVEELTEKQFYQSQENIHNKPI-VLVVEDNP 579
Query: 98 STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGVALLSKIMS 156
+A LL + VT A +G++ + +T DL++T+ +MP +SG ++ ++ S
Sbjct: 580 EMNRFIAELLSKYYFVVT-AFDGVEGIEKTRAITP--DLIVTDCMMPRMSGDEMVEQLRS 636
Query: 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ N+P++++++ L K L G D++ KP EL
Sbjct: 637 DEQFDNIPILLLTAKADENLRIKLLQNGVSDYVNKPFSSEEL 678
Score = 54 (24.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/88 (18%), Positives = 37/88 (42%)
Query: 480 NTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGST 539
N +N N N + + N+ ++ +++N + N S+N +NN + +
Sbjct: 1042 NYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNYNNNNSNNNNNSNNNNNNNNNNNNN 1101
Query: 540 TNNAFIKPAGLKNKSEVSSTVNCLHSSS 567
NN N +++ +N H+++
Sbjct: 1102 NNNNNNNNNNNNNNLNINNLINNNHNNN 1129
Score = 50 (22.7 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 482 ASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTN 541
+S+ N P + +S S +IKK ++ N + N ++N +NN + + N
Sbjct: 1012 SSSSNSSPSNQLSCSS----SPPLIKKPFFSQPTNYINNNNNNNNNNNNNNNNNNNNNNN 1067
Query: 542 N 542
N
Sbjct: 1068 N 1068
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 37/121 (30%), Positives = 61/121 (50%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
KVL++E+D S + L G+ V A NG Q K + L DL+L ++M P + G
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLK--KALEEEYDLILLDLMLPGIDG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL-KNLWQHVW 206
+L K+ + K+ PV+++S+ + L GA D++ KP +EL + H+
Sbjct: 61 FEVLRKV---RAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIG 117
Query: 207 R 207
R
Sbjct: 118 R 118
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
++++++D ++ALL GY V G A L ID+V+T++ MP ++G+
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVHRLS--CGGIDIVITDINMPEMTGI 66
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+L I K+ ++PVI+M+ + + + + +GA DF++KP
Sbjct: 67 EVLRAI--RKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
>UNIPROTKB|P23836 [details] [associations]
symbol:phoP "PhoP" species:83333 "Escherichia coli K-12"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000160 "phosphorelay
signal transduction system" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 EMBL:X59307
EMBL:M74924 EMBL:D90393 EMBL:M81433 PIR:A41965 RefSeq:NP_415648.1
RefSeq:YP_489398.1 PDB:2PKX PDB:2PL1 PDBsum:2PKX PDBsum:2PL1
ProteinModelPortal:P23836 SMR:P23836 DIP:DIP-10500N IntAct:P23836
PRIDE:P23836 EnsemblBacteria:EBESCT00000002540
EnsemblBacteria:EBESCT00000002541 EnsemblBacteria:EBESCT00000014814
GeneID:12931100 GeneID:945697 KEGG:ecj:Y75_p1100 KEGG:eco:b1130
PATRIC:32117509 EchoBASE:EB0724 EcoGene:EG10731 KO:K07660
OMA:ADYFLNE ProtClustDB:PRK10816 BioCyc:EcoCyc:PHOP-MONOMER
BioCyc:ECOL316407:JW1116-MONOMER EvolutionaryTrace:P23836
Genevestigator:P23836 Uniprot:P23836
Length = 223
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 32/123 (26%), Positives = 70/123 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVLTEV-MPCL 145
++VL+VE++ RH + +++ G++V +A + +A L + HI D+ + ++ +P
Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE---HIPDIAIVDLGLPDE 57
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G++L+ + S+ +LP++++++ +S + LS GA D++ KP E+ Q +
Sbjct: 58 DGLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115
Query: 206 WRR 208
RR
Sbjct: 116 MRR 118
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 42/153 (27%), Positives = 71/153 (46%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCL 145
+++L+VE++ S + +L C +EV A NG + L N D +L +VM P +
Sbjct: 1 MRLLVVEDNASLLESIVQIL--CDEFEVDTALNGEDG--LFLALQNIYDAILLDVMMPEM 56
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G ++ KI K PV+ +++ DS+ K L G D++VKP + ELK + +
Sbjct: 57 DGFEVIQKIRDEKIET--PVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRAL 114
Query: 206 WRRCHXXXXXXXXXCTQTQKSIKSKNVENSGNN 238
RR + K K+V+ G +
Sbjct: 115 LRRSGSLTTKQTIRYKGIELFGKDKDVQVDGQS 147
>TIGR_CMR|CPS_3747 [details] [associations]
symbol:CPS_3747 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
RefSeq:YP_270414.1 ProteinModelPortal:Q47XQ6 STRING:Q47XQ6
GeneID:3518534 KEGG:cps:CPS_3747 PATRIC:21470411 OMA:TLESICS
BioCyc:CPSY167879:GI48-3769-MONOMER Uniprot:Q47XQ6
Length = 131
Score = 99 (39.9 bits), Expect = 0.00039, P = 0.00039
Identities = 30/112 (26%), Positives = 63/112 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+ +L+V+++ + + +AAL+ + G+ V A NGL A + N+ V+ +MP ++G
Sbjct: 1 MNILVVDDNKTVQEKLAALIISQGHNVDLAINGLDALGKAQQ-GNYQLFVIDHLMPLMNG 59
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV-DFLV-KPIRKNE 197
V L + +++ ++PV M++ S L K L + ++ D ++ KPI + +
Sbjct: 60 VQLTKNLKANQLSSSVPVFFMTTQGSHTL--KDLVEFSLFDKIIDKPINEEQ 109
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 126 (49.4 bits), Expect = 0.00039, P = 0.00039
Identities = 37/138 (26%), Positives = 70/138 (50%)
Query: 64 VLQMPQEQPQGAMVCWERFLHLRS-LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQ 122
+++M + P A+ ++ + + +L+V++ R ++A L + GY+ A +G+
Sbjct: 800 LIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVD 859
Query: 123 AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 181
A +L NHID+VL++V MP + G L +I + LPVI +++ +CL
Sbjct: 860 ALNVLSK--NHIDIVLSDVNMPNMDGYRLTQRI--RQLGLTLPVIGVTANALAEEKQRCL 915
Query: 182 SKGAVDFLVKPIRKNELK 199
G L KP+ + +K
Sbjct: 916 ESGMDSCLSKPVTLDVIK 933
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 30/104 (28%), Positives = 57/104 (54%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
VLLVE++ R +V+ RN G+EV EA +G +A ++ + + IDL++ ++M P + G
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAE--HEIDLIMLDIMLPEIDGW 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
++ +I +P+IM+++ GA +++ KP
Sbjct: 63 SVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKP 103
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 30/112 (26%), Positives = 66/112 (58%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
++L+V++D S ++ +LR G++ +G QA + +L DLVL ++M P ++G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 148 VALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ + +++ + +P++M+++ D++ +V L GA D+++KP + EL
Sbjct: 65 IDVC-RVL--RADSGVPIVMLTAKTDTVDVVLG-LESGADDYIMKPFKPKEL 112
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 125 (49.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 725 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 767
REA++ +Y++K+ R F K++RYQ RK AE+RPR++G+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
Score = 37 (18.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 496 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSE 555
AS VV + + S I+ N + + S+N+D KP L K E
Sbjct: 6 ASPVVGEEKQSTRSSK-RIKKRKNREATTTMEDKSSSNLDASRKIRTKTKKPKFLSLKLE 64
Query: 556 VSST 559
++++
Sbjct: 65 LNTS 68
>ASPGD|ASPL0000074067 [details] [associations]
symbol:nikA species:162425 "Emericella nidulans"
[GO:0007234 "osmosensory signaling via phosphorelay pathway"
evidence=ISS] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071470 "cellular response to osmotic stress"
evidence=IMP] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEA]
[GO:0071473 "cellular response to cation stress" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 EMBL:BN001303
ProteinModelPortal:C8V8F5 EnsemblFungi:CADANIAT00005966 OMA:IGMTQLT
Uniprot:C8V8F5
Length = 1297
Score = 127 (49.8 bits), Expect = 0.00045, P = 0.00045
Identities = 31/119 (26%), Positives = 62/119 (52%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
H RS +LL E++D + + +L + V+ NGL+A + ++ D++L +V M
Sbjct: 1103 HSRSFDILLAEDNDVNQKLAVKILEKHNHNVSVVGNGLEAVEAVKQ--RRYDVILMDVQM 1160
Query: 143 PCLSGVALLSKIMSHKTRKNL---PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
P + G KI ++ L P+I +++ +G KC+ ++L KP+++N++
Sbjct: 1161 PVMGGFEATGKIREYERDSGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQM 1219
>CGD|CAL0003344 [details] [associations]
symbol:SLN1 species:5476 "Candida albicans" [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0004673 "protein histidine kinase activity" evidence=ISS;IDA]
[GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0046777
"protein autophosphorylation" evidence=IEA] [GO:0018106
"peptidyl-histidine phosphorylation" evidence=IEA] [GO:0006469
"negative regulation of protein kinase activity" evidence=IEA]
[GO:0005034 "osmosensor activity" evidence=IEA] [GO:0009927
"histidine phosphotransfer kinase activity" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 127 (49.8 bits), Expect = 0.00048, P = 0.00048
Identities = 34/119 (28%), Positives = 65/119 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKIL-EDLTNH--IDLVLTEV-M 142
L+VL+ E++ + V++ +L+ G +T A NG +A + E + N+ DL+ +V M
Sbjct: 1244 LRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESIENNENFDLIFMDVQM 1303
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
P + G+ +K++ + N P+I +++ V +CL+ G F+ KPI K +K +
Sbjct: 1304 PEVDGLKA-TKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKV 1361
>UNIPROTKB|Q5A872 [details] [associations]
symbol:SLN1 "Potential response regulator protein"
species:237561 "Candida albicans SC5314" [GO:0004673 "protein
histidine kinase activity" evidence=ISS;IDA] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 127 (49.8 bits), Expect = 0.00048, P = 0.00048
Identities = 34/119 (28%), Positives = 65/119 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKIL-EDLTNH--IDLVLTEV-M 142
L+VL+ E++ + V++ +L+ G +T A NG +A + E + N+ DL+ +V M
Sbjct: 1244 LRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESIENNENFDLIFMDVQM 1303
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
P + G+ +K++ + N P+I +++ V +CL+ G F+ KPI K +K +
Sbjct: 1304 PEVDGLKA-TKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKV 1361
>TIGR_CMR|GSU_0811 [details] [associations]
symbol:GSU_0811 "nitrogen regulation protein NtrX"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0019740 "nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 KO:K13599 RefSeq:NP_951868.1
ProteinModelPortal:Q74EZ8 GeneID:2685237 KEGG:gsu:GSU0811
PATRIC:22024383 OMA:DIWMPRL BioCyc:GSUL243231:GH27-761-MONOMER
Uniprot:Q74EZ8
Length = 456
Score = 121 (47.7 bits), Expect = 0.00051, P = 0.00051
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+V+++ R +A +L + GY A +G++A + ++ + DLVL ++ MP L G+
Sbjct: 5 ILVVDDEQDIRTALAGILEDEGYRTAFARDGVEALETVQK--DRPDLVLLDIWMPRLDGM 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
L ++ + L V+MMS ++ K GA DF+ KP+
Sbjct: 63 ETLQRLKT--ADPGLTVVMMSGHGTIETAVKSTKMGAFDFIEKPL 105
>TIGR_CMR|DET_1231 [details] [associations]
symbol:DET_1231 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_181944.1 ProteinModelPortal:Q3Z755 STRING:Q3Z755
GeneID:3229494 KEGG:det:DET1231 PATRIC:21609493 OMA:HIWESES
ProtClustDB:CLSK741625 BioCyc:DETH243164:GJNF-1232-MONOMER
Uniprot:Q3Z755
Length = 225
Score = 115 (45.5 bits), Expect = 0.00053, P = 0.00053
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+LL+E+D + V+ + L GY V +NG ++ L D+++ ++M P L
Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMA--LAYTFDVIILDIMLPELD 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G A+ KI S+ + P+IM+++ L+ GA D+LVKP EL + +
Sbjct: 61 GFAVCHKIRSNGNQT--PIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALL 118
Query: 207 RRCH 210
RR +
Sbjct: 119 RRAN 122
>CGD|CAL0003772 [details] [associations]
symbol:SKN7 species:5476 "Candida albicans" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:1900436
"positive regulation of filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:1900445
"positive regulation of filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0034599
"cellular response to oxidative stress" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000747 "conjugation with cellular
fusion" evidence=IEA] [GO:0035690 "cellular response to drug"
evidence=IEA] [GO:0008361 "regulation of cell size" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IEA] [GO:0000304
"response to singlet oxygen" evidence=IEA] [GO:0009405
"pathogenesis" evidence=IEA] [GO:0000981 "sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 CGD:CAL0003772 GO:GO:0005634 GO:GO:0071216
GO:GO:0036180 GO:GO:1900445 GO:GO:0034599 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009267
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
GO:GO:0036170 EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:1900436
KO:K15859 RefSeq:XP_716809.1 RefSeq:XP_716869.1
ProteinModelPortal:Q5A4X5 STRING:Q5A4X5 GeneID:3641499
GeneID:3641563 KEGG:cal:CaO19.8586 KEGG:cal:CaO19.971
Uniprot:Q5A4X5
Length = 559
Score = 122 (48.0 bits), Expect = 0.00053, P = 0.00053
Identities = 42/111 (37%), Positives = 57/111 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGV 148
VLLVE+D+ + L G VT T+GL A +E T + DLVL + VMP L G
Sbjct: 426 VLLVEDDNVCIQLCRKFLVKYGCSVTVVTDGLNAISTVEH-TKY-DLVLMDIVMPNLDGA 483
Query: 149 ALLSKIMSHKTRKNLPVIMMS-SLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
S I S T+ P+I M+ +++ LV L G D L KP K++L
Sbjct: 484 TATSVIRSFDTKT--PIIAMTGNIEDNDLV-TYLQNGMSDILAKPFTKDDL 531
>UNIPROTKB|Q5A4X5 [details] [associations]
symbol:SKN7 "Potential HSF-type DNA binding transcription
factor" species:237561 "Candida albicans SC5314" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0034599
"cellular response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=ISS] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] [GO:1900436 "positive regulation of
filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR000232 InterPro:IPR001789 InterPro:IPR014402
Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595 PRINTS:PR00056
PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415 SMART:SM00448
CGD:CAL0003772 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 GO:GO:0034599 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009267 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0036170
EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:1900436 KO:K15859
RefSeq:XP_716809.1 RefSeq:XP_716869.1 ProteinModelPortal:Q5A4X5
STRING:Q5A4X5 GeneID:3641499 GeneID:3641563 KEGG:cal:CaO19.8586
KEGG:cal:CaO19.971 Uniprot:Q5A4X5
Length = 559
Score = 122 (48.0 bits), Expect = 0.00053, P = 0.00053
Identities = 42/111 (37%), Positives = 57/111 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSGV 148
VLLVE+D+ + L G VT T+GL A +E T + DLVL + VMP L G
Sbjct: 426 VLLVEDDNVCIQLCRKFLVKYGCSVTVVTDGLNAISTVEH-TKY-DLVLMDIVMPNLDGA 483
Query: 149 ALLSKIMSHKTRKNLPVIMMS-SLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
S I S T+ P+I M+ +++ LV L G D L KP K++L
Sbjct: 484 TATSVIRSFDTKT--PIIAMTGNIEDNDLV-TYLQNGMSDILAKPFTKDDL 531
>TAIR|locus:2132902 [details] [associations]
symbol:AT4G27900 "AT4G27900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002687 EMBL:AL161572 EMBL:AL035524 EMBL:AY062469
EMBL:AY093297 IPI:IPI00527124 PIR:T02891 RefSeq:NP_194519.1
RefSeq:NP_849461.1 UniGene:At.26998 IntAct:Q9SUE8 PRIDE:Q9SUE8
EnsemblPlants:AT4G27900.1 EnsemblPlants:AT4G27900.2 GeneID:828903
KEGG:ath:AT4G27900 TAIR:At4g27900 HOGENOM:HOG000241629
InParanoid:Q9SUE8 OMA:ISCTSED PhylomeDB:Q9SUE8
ProtClustDB:CLSN2685530 Genevestigator:Q9SUE8 Uniprot:Q9SUE8
Length = 261
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00061
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 766
DR +++YR KK++R F +K++Y RK LA+ +PRIRG+F +
Sbjct: 213 DRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAK 255
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 123 (48.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 724 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 767
DREA V +YR+K+ R F K +RY SRK AE RPR+ G+F ++
Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
Score = 39 (18.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 508 KGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFI 545
+G C Q + + + S+G N D GS +NA+I
Sbjct: 222 RGHQCHNQQNFQFN-IKYGSSGTHYN-DNGSINHNAYI 257
>TIGR_CMR|SO_3988 [details] [associations]
symbol:SO_3988 "aerobic respiration control protein ArcA"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07773
OMA:QRTMQEN ProtClustDB:PRK11173 SUPFAM:SSF46894 HSSP:P08402
RefSeq:NP_719518.1 ProteinModelPortal:Q8EAB9 SMR:Q8EAB9
GeneID:1171620 KEGG:son:SO_3988 PATRIC:23527652 Uniprot:Q8EAB9
Length = 238
Score = 115 (45.5 bits), Expect = 0.00063, P = 0.00063
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+VE++ TR+ + ++ GY VTEA +G + K +++ N I+LV+ ++ +P +G+
Sbjct: 6 ILIVEDEAVTRNTLRSIFEAEGYVVTEANDGAEMHKAMQE--NKINLVVMDINLPGKNGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L ++ + N+ +I ++ D+ L GA D++ KP EL
Sbjct: 64 LLAREL---REINNIGLIFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>TIGR_CMR|DET_0624 [details] [associations]
symbol:DET_0624 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
Pfam:PF00072 Pfam:PF01966 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
eggNOG:COG3437 Gene3D:1.10.3210.10 InterPro:IPR006675
TIGRFAMs:TIGR00277 RefSeq:YP_181366.1 ProteinModelPortal:Q3Z8T3
STRING:Q3Z8T3 GeneID:3230017 KEGG:det:DET0624 PATRIC:21608315
HOGENOM:HOG000266481 OMA:WEELKRC ProtClustDB:CLSK837371
BioCyc:DETH243164:GJNF-625-MONOMER Uniprot:Q3Z8T3
Length = 334
Score = 118 (46.6 bits), Expect = 0.00064, P = 0.00064
Identities = 28/106 (26%), Positives = 58/106 (54%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
VL V+++D+ R ++ L + GY+ A+N +A +I++ + + L + ++ MP LSG+
Sbjct: 8 VLTVDDEDTIRRLLYQKLTSEGYKCLTASNATEAMEIIK--SQDVSLAILDIKMPGLSGM 65
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194
+ +I + + VIM +++ C+ GA D++ KP +
Sbjct: 66 DIFPEIRT--ISPDTAVIMATAISDTDTAIACMKLGAYDYVTKPFK 109
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 114 (45.2 bits), Expect = 0.00065, P = 0.00065
Identities = 33/111 (29%), Positives = 57/111 (51%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+LL+E+D S ++ L + GYEV N +A + + + DL + +V +P G
Sbjct: 4 KILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE--RYFDLWILDVKVPLGDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+LL ++ K+ K P I M+SL++ + + G D++ KP EL
Sbjct: 62 FSLLKEL--RKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIKKPFELAEL 110
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 34/121 (28%), Positives = 63/121 (52%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
K+L+V++D R ++ L GY+V A N Q ++LE H+ +VL ++P G+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHL-IVLDLMLPGEDGL 65
Query: 149 ALLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
++ ++ + +P++M+++ D + + L GA D+L KP EL + V R
Sbjct: 66 SICRRLRQQGS--TIPIVMLTAKGDEVDRIIG-LELGADDYLPKPFNPRELLARIKAVMR 122
Query: 208 R 208
R
Sbjct: 123 R 123
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 122 (48.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 36/113 (31%), Positives = 56/113 (49%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S+ VLLVE+D S R + L GY + +A E LV+++V MP +
Sbjct: 2 SINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAE--AQPFSLVISDVNMPGM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G LLS + S + LPV++M++ ++ + +GA D+LVKP L
Sbjct: 60 DGHQLLSLLRSRHPQ--LPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
Score = 43 (20.2 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 481 TASNVNKGPGGNIESASQVVNSL 503
T+S N G GGN ES + + L
Sbjct: 395 TSSPDNAGAGGNAESVGALGDDL 417
>TIGR_CMR|CPS_3950 [details] [associations]
symbol:CPS_3950 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 Gene3D:3.20.20.450
InterPro:IPR001633 SMART:SM00052 SUPFAM:SSF141868 PROSITE:PS50883
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000136246 RefSeq:YP_270608.1 ProteinModelPortal:Q47X62
STRING:Q47X62 GeneID:3523052 KEGG:cps:CPS_3950 PATRIC:21470787
OMA:NITEVES ProtClustDB:CLSK768238
BioCyc:CPSY167879:GI48-3963-MONOMER Uniprot:Q47X62
Length = 566
Score = 126 (49.4 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLR--NCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV- 141
++ +KVL+V++D R ++ L+ + +TE + A K L+D + D +L +
Sbjct: 1 MQHMKVLIVDDDIVDRELIKRTLKRSDISCNITEVESVDDALKNLQD--SSFDAILLDYN 58
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191
+P +G+ LL +I R + VIMMS+ L C++ GA DFLVK
Sbjct: 59 LPQRNGIELLLEIKGDPNRHDTAVIMMSTSKEDELALNCINAGAQDFLVK 108
Score = 41 (19.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 493 IESASQVVNSLE-IIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLK 551
I++ S+ + +E +I+ D + S P+ + S +D+G IK L
Sbjct: 340 IDAKSKTITGVEALIRWNIDGDMISPDKFIPIAEKSR---LIIDIGKWVIQQAIKQLSLW 396
Query: 552 NKSEVSSTVNCLHSSSFQ 569
NK+ S ++ SS Q
Sbjct: 397 NKNRSSPLTMAINFSSVQ 414
>UNIPROTKB|O25153 [details] [associations]
symbol:C694_01990 "Histidine kinase CheA" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR002545
InterPro:IPR003594 InterPro:IPR004105 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF01584
Pfam:PF01627 Pfam:PF02518 Pfam:PF02895 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894 SMART:SM00073
SMART:SM00260 SMART:SM00387 SMART:SM00448 InterPro:IPR005467
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0006935 GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
EMBL:AE000511 GenomeReviews:AE000511_GR KO:K03407
Gene3D:1.10.287.560 SUPFAM:SSF50341 EMBL:CP003904 PIR:H64568
RefSeq:NP_207190.1 RefSeq:YP_006934316.1 HSSP:Q56310 DIP:DIP-3162N
MINT:MINT-160605 GeneID:13869578 GeneID:898900 KEGG:heo:C694_01990
KEGG:hpy:HP0392 PATRIC:20592023 OMA:CDHGIED ProtClustDB:CLSK872488
Uniprot:O25153
Length = 803
Score = 123 (48.4 bits), Expect = 0.00068, P = 0.00068
Identities = 27/104 (25%), Positives = 56/104 (53%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
VL +++ + R ++ L+ G + EATNGL+ ++L++ D +L ++ MP + G
Sbjct: 679 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 738
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
S++ + KNLP+I ++S + + + G +++ KP
Sbjct: 739 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKP 782
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 120 (47.3 bits), Expect = 0.00068, P = 0.00068
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V +V++D S R V+ L G T NG + + L T D++L+++ MP + G+
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP--DVLLSDIRMPGMDGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
ALL +I LPVI+M++ + +GA D+L KP +E
Sbjct: 64 ALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>TIGR_CMR|GSU_1220 [details] [associations]
symbol:GSU_1220 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR007831 Pfam:PF00072 Pfam:PF05157 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556
GO:GO:0006810 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952273.1
ProteinModelPortal:Q74DU5 DNASU:2688249 GeneID:2688249
KEGG:gsu:GSU1220 PATRIC:22025211 HOGENOM:HOG000134726 OMA:PIRIVTR
ProtClustDB:CLSK828245 BioCyc:GSUL243231:GH27-1212-MONOMER
Uniprot:Q74DU5
Length = 277
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 28/107 (26%), Positives = 58/107 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
K+L+VE+ ++ L G++V A +G++ K + DL++ + VMP + G
Sbjct: 154 KILVVEDTPPVATIIQVALHKEGFDVLLAGDGVEGLKTA--VVEKPDLIICDSVMPRMDG 211
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194
+L+ + S+ T + P+I+++S + + L G +DF+ KP++
Sbjct: 212 FSLMRAVRSNPTIADTPMILLTSKATGEDEQRALEAGFIDFIAKPVQ 258
>UNIPROTKB|Q9KRN4 [details] [associations]
symbol:VC1602 "Chemotaxis protein CheV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072
Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
EMBL:AE004237 PIR:A82180 RefSeq:NP_231242.1
ProteinModelPortal:Q9KRN4 DNASU:2613858 GeneID:2613858
KEGG:vch:VC1602 PATRIC:20082263 ProtClustDB:CLSK874446
Uniprot:Q9KRN4
Length = 328
Score = 117 (46.2 bits), Expect = 0.00079, P = 0.00079
Identities = 36/126 (28%), Positives = 66/126 (52%)
Query: 80 ERFLHLRSLKVLLVENDDS-TRHVVAALLRNCGYEVTEATNGLQAW-KILE--------- 128
+R + R+ K ++V +D + R ++ L + GY + +G +A K++E
Sbjct: 187 QRMVTKRNAKTIMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKLMELKQAAKEEN 246
Query: 129 -DLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186
++ ID V+T+V MP + G+ L+ ++ + ++P++M SSL S K L+ GA
Sbjct: 247 VPVSELIDAVVTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGAN 306
Query: 187 DFLVKP 192
D L KP
Sbjct: 307 DTLTKP 312
>TIGR_CMR|VC_1602 [details] [associations]
symbol:VC_1602 "chemotaxis protein CheV" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415 OMA:AKWIGIV
InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042 EMBL:AE004237
PIR:A82180 RefSeq:NP_231242.1 ProteinModelPortal:Q9KRN4
DNASU:2613858 GeneID:2613858 KEGG:vch:VC1602 PATRIC:20082263
ProtClustDB:CLSK874446 Uniprot:Q9KRN4
Length = 328
Score = 117 (46.2 bits), Expect = 0.00079, P = 0.00079
Identities = 36/126 (28%), Positives = 66/126 (52%)
Query: 80 ERFLHLRSLKVLLVENDDS-TRHVVAALLRNCGYEVTEATNGLQAW-KILE--------- 128
+R + R+ K ++V +D + R ++ L + GY + +G +A K++E
Sbjct: 187 QRMVTKRNAKTIMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKLMELKQAAKEEN 246
Query: 129 -DLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186
++ ID V+T+V MP + G+ L+ ++ + ++P++M SSL S K L+ GA
Sbjct: 247 VPVSELIDAVVTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGAN 306
Query: 187 DFLVKP 192
D L KP
Sbjct: 307 DTLTKP 312
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 125 (49.1 bits), Expect = 0.00080, P = 0.00080
Identities = 66/386 (17%), Positives = 157/386 (40%)
Query: 223 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAV----EVDSP 278
+ + S + +S + S+ E ++ S + + V EV S
Sbjct: 351 SSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSS 410
Query: 279 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDV 338
+S S +++ + + + + S++++ S V V+++ E E + ++ S +V
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEV 469
Query: 339 GGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEA 398
+ + + S I ++ ++ S SE ++ +S SS + +
Sbjct: 470 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSS 529
Query: 399 AKLAGAITKIIDSDK-EDTEYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDI 457
+ + +++I S + + E S+ S+++ +S + S V
Sbjct: 530 SSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS-SSSEVSSSSEVVSSSSEVSSSSEVSS- 587
Query: 458 GTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSH 517
+ + V+ S+ + S +S+ + S+S+V +S E+ S + S
Sbjct: 588 SSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVSSS 644
Query: 518 SNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLC 577
S + SS S++ ++ S+++ + + + SEV S+ + + SSS + + + +
Sbjct: 645 SQ---VTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS-EVSSSSEVS 700
Query: 578 SPRQVLLDKRDDLVASSVLVHPRSTQ 603
S QV+ ++V+SS V S++
Sbjct: 701 SSSQVI--SSSEVVSSSSEVVSSSSE 724
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 125 (49.1 bits), Expect = 0.00080, P = 0.00080
Identities = 66/386 (17%), Positives = 157/386 (40%)
Query: 223 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAV----EVDSP 278
+ + S + +S + S+ E ++ S + + V EV S
Sbjct: 351 SSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSS 410
Query: 279 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDV 338
+S S +++ + + + + S++++ S V V+++ E E + ++ S +V
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEV 469
Query: 339 GGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEA 398
+ + + S I ++ ++ S SE ++ +S SS + +
Sbjct: 470 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSS 529
Query: 399 AKLAGAITKIIDSDK-EDTEYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDI 457
+ + +++I S + + E S+ S+++ +S + S V
Sbjct: 530 SSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS-SSSEVSSSSEVVSSSSEVSSSSEVSS- 587
Query: 458 GTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSH 517
+ + V+ S+ + S +S+ + S+S+V +S E+ S + S
Sbjct: 588 SSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVSSS 644
Query: 518 SNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLC 577
S + SS S++ ++ S+++ + + + SEV S+ + + SSS + + + +
Sbjct: 645 SQ---VTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS-EVSSSSEVS 700
Query: 578 SPRQVLLDKRDDLVASSVLVHPRSTQ 603
S QV+ ++V+SS V S++
Sbjct: 701 SSSQVI--SSSEVVSSSSEVVSSSSE 724
>TIGR_CMR|CPS_4597 [details] [associations]
symbol:CPS_4597 "transcriptional regulatory protein OmpR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07659 ProtClustDB:PRK09468
RefSeq:YP_271244.1 ProteinModelPortal:Q47VC8 SMR:Q47VC8
STRING:Q47VC8 GeneID:3519604 KEGG:cps:CPS_4597 PATRIC:21472017
OMA:AANSEQM BioCyc:CPSY167879:GI48-4606-MONOMER Uniprot:Q47VC8
Length = 240
Score = 114 (45.2 bits), Expect = 0.00083, P = 0.00083
Identities = 34/121 (28%), Positives = 63/121 (52%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
K+L+V++D R ++ L G+ V A N Q ++LE H+ LVL ++P G+
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHL-LVLDLMLPGEDGL 65
Query: 149 ALLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
++ ++ + N+P++M+++ D + + L GA D++ KP EL + V R
Sbjct: 66 SICRRLRQNSN--NIPIVMLTAKGDEVDRIIG-LELGADDYMPKPFNPRELLARIKAVLR 122
Query: 208 R 208
R
Sbjct: 123 R 123
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 119 (46.9 bits), Expect = 0.00085, P = 0.00085
Identities = 31/112 (27%), Positives = 62/112 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
+VL+V++D S R V+ L+ GY+V A +G + ++ ++ + LV+T++ MP + G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPA--LVVTDLKMPGMGG 67
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
LL +I + VI++++ ++ + GA D++ KP ++ LK
Sbjct: 68 FRLLQEIKGRSP--DTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 113 (44.8 bits), Expect = 0.00093, P = 0.00093
Identities = 36/121 (29%), Positives = 67/121 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+LLV++++ R V+ L G+ V EA +G +A K + + IDL++ ++M P + G+
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSE--HKIDLIILDLMLPEIDGM 61
Query: 149 ALLSKIMSHKTRKNLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ +I KT +P+IM+++ + + + L GA D++VKP E+ + V R
Sbjct: 62 EIAKEI--RKTSL-VPIIMLTARGEEIDKILG-LEIGADDYVVKPFSPREVVARVKAVLR 117
Query: 208 R 208
R
Sbjct: 118 R 118
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 113 (44.8 bits), Expect = 0.00098, P = 0.00098
Identities = 30/115 (26%), Positives = 60/115 (52%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+R ++VLLVE+D+ + A L+ G+ + +G A +L D+++ ++ +P
Sbjct: 7 VRVMRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLP 66
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
SG+ +L I + PV+++++ D++ K L G+ D++ KP EL
Sbjct: 67 KRSGLDVLKTI--REKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEEL 119
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 113 (44.8 bits), Expect = 0.00099, P = 0.00099
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S +VL+V++D + LR G+EV A +G +A + + N D ++ ++ MP L
Sbjct: 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPVL 64
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
GV++++ + + ++PV ++S+ S+ L GA D+LVKP EL
Sbjct: 65 DGVSVVTALRAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAEL 115
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.127 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 780 687 0.00080 121 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 246
No. of states in DFA: 623 (66 KB)
Total size of DFA: 355 KB (2176 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.75u 0.09s 63.84t Elapsed: 00:00:03
Total cpu time: 63.78u 0.09s 63.87t Elapsed: 00:00:03
Start: Fri May 10 16:12:43 2013 End: Fri May 10 16:12:46 2013
WARNINGS ISSUED: 1