BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004001
(780 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMP 143
L S+K+L+V++ + R ++ L GYE V EA +G++AW+ L+ + L+ MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
++G+ L+ K+ S K +P+IM+++ V L G +++VKP LK
Sbjct: 63 EMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMP 143
L S+K+L+V++ + R ++ L GYE V EA +G++AW+ L+ + L+ MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
++G+ L+ K+ S K +P+IM+++ V L G +++VKP LK
Sbjct: 63 EMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMP 143
L S+K+L+V++ + R ++ L GYE V EA +G++AW+ L+ + L+ MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
++G+ L+ K+ S K +P+IM+++ V L G +++VKP LK
Sbjct: 63 EMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV- 141
+H S +L++++D+ R +AA L + ++V +A NGLQ +I E + DLV+ ++
Sbjct: 1 MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--SEQPDLVICDLR 58
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
P + G+ L+ +I +T P+I++S M + L GA D+L+KP+ E +
Sbjct: 59 XPQIDGLELIRRI--RQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL---EDLAV 113
Query: 202 WQHVWRRC 209
+H RR
Sbjct: 114 LEHSVRRA 121
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R +V LLR+ G+ T EA +GL A +L+ D V+T+ MP
Sbjct: 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMP 68
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + + K+LPV+M+++ + + G ++VKP LK
Sbjct: 69 GMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLD 128
Query: 204 HVWRR 208
++ R
Sbjct: 129 KIFER 133
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
H S +L++++D+ R +AA L + ++V +A NGLQ +I E + DLV+ ++
Sbjct: 2 HKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--SEQPDLVICDLRX 59
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202
P + G+ L+ +I +T P+I++S + L GA D+L+KP+ E +
Sbjct: 60 PQIDGLELIRRI--RQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL---EDLAVL 114
Query: 203 QHVWRRC 209
+H RR
Sbjct: 115 EHSVRRA 121
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWK-ILEDLTNHIDLVLTEVMPCLSGV 148
+L+V++DD+ + +LR GYEV A +G +A + I ++L + L+ ++P + G
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDA--LICDVLLPGIDGY 64
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L ++ H K LP++ +++ + GA D+L KP EL
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEVM-PC 144
S ++L+V++ ++ ++ A L YEV+ A +G A + DL D++L +VM P
Sbjct: 2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP---DIILLDVMMPG 58
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ G + K+ T +++PV+++++LD G + L GA DFL KPI
Sbjct: 59 MDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 134 IDLVLTEVMPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+DLV+ G+ + + S + + LPV+ M D G + K L G D L +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255
Query: 193 IRKNEL 198
I EL
Sbjct: 256 IDPQEL 261
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 45 SSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVA 104
+ I+ED ++ A V + + Q A+ R + ++VL+V++ ++RH
Sbjct: 82 ADISEDKREAWLEAGVLDYVXKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTX 141
Query: 105 ALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163
A LR +V EA++ +A LE I LVL + P + G++L+ + +++ L
Sbjct: 142 AQLRKQLLQVHEASHAREALATLEQ-HPAIRLVLVDYYXPEIDGISLVRXLRERYSKQQL 200
Query: 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+I +S D GL + L +GA DFL +P EL+
Sbjct: 201 AIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEVM-PC 144
S ++L+V++ ++ ++ A L YEV+ A +G A + DL D++L +VM P
Sbjct: 1 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP---DIILLDVMMPG 57
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ G + K+ T +++PV+++++LD G + L GA DFL KPI
Sbjct: 58 MDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 134 IDLVLTEVMPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+DLV+ G+ + + S + + LPV+ M D G + K L G D L +P
Sbjct: 195 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 254
Query: 193 IRKNEL 198
I EL
Sbjct: 255 IDPQEL 260
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S KVLLV++ R +V+ L+ GYEV EA NG A + L + T + +VL +MP +
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-IVLXIMMPVMD 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G +L K+ + K +PVI++++ LS GA + KP ++ +H+
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S KVLLV++ R +V+ L+ GYEV EA NG A + L + T + +VL +MP +
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-IVLDIMMPVMD 60
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G +L K+ + K +PVI++++ LS GA + KP ++ +H+
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+VL+V++ R ++ ++ GYEV EATNG +A + ++L I + + MP ++G
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDI-VTMDITMPEMNG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ + +IM K N +I+ S++ +V + + GA DF+VKP + + +
Sbjct: 62 IDAIKEIM--KIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRV 110
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+VL+V++ R ++ ++ GYEV EATNG +A + ++L I + + MP ++G
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDI-VTMDITMPEMNG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ + +IM K N +I+ S++ +V + + GA DF+VKP + + +
Sbjct: 63 IDAIKEIM--KIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRV 111
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
VL+VE+++S +A LLR G+E T T+G A + E D+VL ++M P +SG
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAA--LAEFDRAGADIVLLDLMLPGMSGT 64
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+ ++ + R ++PVIM+++ DS L GA D++ KP EL + V RR
Sbjct: 65 DVCKQL---RARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ +MP
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWMMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++L + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLV-LTEVMPCL 145
VL+V++ T + + + G+ + + A +G +A ++ +ID+V L MP +
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKM 96
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ LS IM KN VIM+S+L LV CL KGA F+VKP+ + ++
Sbjct: 97 DGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKV 147
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V +V++D S R V+ L G T NG + L T D++L+++ MP + G+
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
ALL +I + LPVI+M++ + +GA D+L KP +E
Sbjct: 64 ALLKQI--KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V +V++D S R V+ L G T NG + L T D++L+++ MP + G+
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
ALL +I + LPVI+M++ + +GA D+L KP +E
Sbjct: 64 ALLKQI--KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+VL+ E++ R +A +LR GYE+ EA +G +A ++ E + DLV+ +V MP
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE--LHKPDLVIMDVKMPRRD 72
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ S+I S ++ P++++++ LV + GA+ +LVKP ++L
Sbjct: 73 GIDAASEIAS---KRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDL 121
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V +V++D S R V+ L G T NG + L T D++L+++ MP + G+
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
ALL +I + LPVI+M++ + +GA D+L KP +E
Sbjct: 64 ALLKQI--KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
R+ ++L+VE+ + + +L GY+ NG +A + L DL++++V MP
Sbjct: 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS--LTRPDLIISDVLMPE 63
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+ G AL + + +PVI+++ L V + L GA DF+ KP
Sbjct: 64 MDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKP 111
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V+++ ++ LR GYEV A +G +A +++E+L DL+L ++M P G
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
V + ++ + + ++P+IM+++ DS L GA D++ KP EL
Sbjct: 62 VEVCREV---RKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+VE++ R ++ + + G A +G+ A ++L T DL++ ++ MP ++G
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP--DLMICDIAMPRMNG 66
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK-NELKNL 201
+ LL I + + PV+++S+ ++M + K L G D L+KP++ N L+ +
Sbjct: 67 LKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V+++ ++ LR GYEV A +G +A +++E+L DL+L ++M P G
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
V + ++ + + ++P+IM+++ DS L GA D++ KP EL
Sbjct: 62 VEVCREV---RKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+++++ + + LL G EV A++ + +I + N ID+V+T++ MP LSG
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ +L +I K ++ VI+++ + + +GA ++L KP+ +L
Sbjct: 65 MDILREI--KKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V +V++D S R V+ L G T NG + L T D++L+ + MP + G+
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSXIRMPGMDGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
ALL +I + LPVI+M++ + +GA D+L KP +E
Sbjct: 64 ALLKQI--KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ +MP
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWMMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 61 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V++++S ++ L GY+V A++G +A K E T DL++ +VM P L G
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE--TEKPDLIVLDVMLPKLDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ + ++ K P++M+++ D L GA D++ KP E+ + + R
Sbjct: 63 IEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120
Query: 208 R 208
R
Sbjct: 121 R 121
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L++E+D +V+ L + GY V A + +++ +H DL+L ++ +P G
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNG--LIKAREDHPDLILLDLGLPDFDG 96
Query: 148 VALLSKIMSHKTRKN--LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
++ ++ RKN LP+I++++ D++ + L GA D+L+KP +EL
Sbjct: 97 GDVVQRL-----RKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWKMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL + +P + G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLXMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 64
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 65 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWRMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE + R +V +L G++ EA + A L + DL+L E ++P SG
Sbjct: 4 RILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLEWMLPGGSG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ + + +++PV+M+++ + L GA D++ KP EL + V R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 208 R 208
R
Sbjct: 122 R 122
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
+ L VL+ E++D R V A L C ++T TNGLQA + ++ D+++ ++ M
Sbjct: 7 QIMPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQM 64
Query: 143 PCLSGVALLSKI----MSHKT-RKNLPVIMMSSLDSMGLVFKCLSKGAV--DFLVKPIRK 195
P + G+ +S+I +H T R ++ I ++D GA +++ KP+
Sbjct: 65 PVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDD-------RPGAELDEYVSKPLNP 117
Query: 196 NELKNLWQHVWRRCH 210
N+L++ V CH
Sbjct: 118 NQLRD----VVLTCH 128
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
K+L+V+++ ++ + GYEV A NG +A + E I ++L ++P + G+
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDI-IILXLMLPEIDGL 61
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+ I + ++P++M+S+ DS L GA D++ KP EL+ + + RR
Sbjct: 62 EVAKTI---RKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE++ R +V +L G++ EA + A L + DL+L + ++P SG
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ + + +++PV+M+++ + L GA D++ KP EL + V R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 208 R 208
R
Sbjct: 122 R 122
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V+++ ++ + GYEV A NG +A + E D+++ ++M P + G
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE--AEQPDIIILDLMLPEIDG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ + I + ++P++M+S+ DS L GA D++ KP EL+ + + R
Sbjct: 61 LEVAKTI---RKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
Query: 208 R 208
R
Sbjct: 118 R 118
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 65 NMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 124
Query: 204 HVWRR 208
++ +
Sbjct: 125 KIFEK 129
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M++S + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE++ R +V +L G++ EA + A L + DL+L + ++P SG
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207
+ + + +++PV+M+++ + L GA D++ KP EL + V R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 208 R 208
R
Sbjct: 122 R 122
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ +L ++ +N+ VI+M++ + + + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++ +L+VE++ TR+ + ++ GY+V EAT+G + +IL + I+LV+ ++ +P
Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLP 58
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+G+ L ++ + + N+ ++ ++ D+ L GA D++ KP EL
Sbjct: 59 GKNGLLLAREL---REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEV------TEATNGLQAWKILEDLTNHIDLVLTEV-M 142
V L+++D R + L G+ V TEA GL A + +V++++ M
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--------DFAGIVISDIRM 57
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
P + G+AL KI++ +LP+I+++ + + + + GA DF+ KP + L
Sbjct: 58 PGMDGLALFRKILA--LDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEV------TEATNGLQAWKILEDLTNHIDLVLTEV-M 142
V L+++D R + L G+ V TEA GL A + +V++++ M
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--------DFAGIVISDIRM 57
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
P + G+AL KI++ +LP+I+++ + + + + GA DF+ KP + L
Sbjct: 58 PGMDGLALFRKILA--LDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149
V +V++D S R + LLR+ G+EV E + + H LVL MP +SG+
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEV-ETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIE 65
Query: 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L ++ + +P++ +++ + + + + GA++FL KP + L
Sbjct: 66 LQEQLTA--ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ V GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ ++++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ ++++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
++L+V++D S ++ +LR G++ +G QA + +L DLVL ++M P ++G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNG 64
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE 197
+ + + + +P++M+++ V L GA D+++KP + E
Sbjct: 65 IDVCRVL---RADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWRMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 65 NMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 124
Query: 204 HVWRR 208
++ +
Sbjct: 125 KIFEK 129
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 65 NMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 124
Query: 204 HVWRR 208
++ +
Sbjct: 125 KIFEK 129
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP +
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G+ LL I + LPV+M ++ + GA ++VKP L+ +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 206 WRR 208
+ +
Sbjct: 120 FEK 122
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 65 NMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 124
Query: 204 HVWRR 208
++ +
Sbjct: 125 KIFEK 129
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200
+ + ++ +N+ VI+M++ + ++ + GA+ KP +E+++
Sbjct: 63 IEIAKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTN---HIDLVLTEV- 141
S+K+L+VE++ + V+ +L G E E A +G +A+ +++LT+ + +++ +V
Sbjct: 1 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 60
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
MP + G+ L +K++ P++ +++ + +CL G FL KPI++ +LK +
Sbjct: 61 MPKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
Query: 202 W 202
Sbjct: 120 L 120
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ ++ + MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIICDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 5 KELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 63 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 122
Query: 204 HVWRR 208
++ +
Sbjct: 123 KIFEK 127
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTN---HIDLVLTEV- 141
S+K+L+VE++ + V+ +L G E E A +G +A+ +++LT+ + +++ +V
Sbjct: 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 61
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201
MP + G+ L +K++ P++ +++ + +CL G FL KPI++ +LK +
Sbjct: 62 MPKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
Query: 202 W 202
Sbjct: 121 L 121
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V+ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+VE++ TR+ + ++ GY+V EAT+G + +IL + I+LV+ ++ +P +G+
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYD--INLVIXDINLPGKNGL 63
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L ++ + + N+ + ++ D+ L GA D++ KP EL
Sbjct: 64 LLAREL---REQANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
LK L+V+++ + R + LL+ G+ V EA +G+ A L+ V+++ MP +
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G+ LL I + LPV+M+++ + GA ++VKP L+ +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 206 WRR 208
+ +
Sbjct: 120 FEK 122
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V+ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 2 KELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 60 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 119
Query: 204 HVWRR 208
++ +
Sbjct: 120 KIFEK 124
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V + + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 5 KELKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 63 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 122
Query: 204 HVWRR 208
++ +
Sbjct: 123 KIFEK 127
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMPC 144
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ + ++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISAWNMPN 61
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNK 121
Query: 205 VWRR 208
++ +
Sbjct: 122 IFEK 125
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 107 LRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165
LR G+EV A +G +A + + N D ++ ++ MP L GV++++ + + ++PV
Sbjct: 27 LRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAMDN--DVPV 82
Query: 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
++S+ S+ L GA D+LVKP EL + + RR
Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
+++LV+ + L G+++ + N ++A + + H L++TE MP +SG
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVA--VKTHPHLIITEANMPKISG 67
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ L + + + ++PVI +S + + L G +DF+ KP+
Sbjct: 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
++L+VE++ R +V +L G++ EA + A L + + ++L ++P SG+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDL-ILLAWMLPGGSGI 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+ + +++PV+M+++ + L GA D + KP EL + V RR
Sbjct: 63 QFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
++L+VE++ R +V +L G++ EA + A L + + ++L ++P SG+
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDL-ILLAWMLPGGSGI 62
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+ + +++PV+M+++ + L GA D + KP EL + V RR
Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+ + + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVLTEV-MPCLS 146
+VL+VE++ RH + +++ G++V +A + +A L + HI D+ + ++ +P
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE---HIPDIAIVDLGLPDED 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G++L+ + S+ +LP++++++ +S + LS GA D++ KP E+ Q +
Sbjct: 59 GLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALX 116
Query: 207 RR 208
RR
Sbjct: 117 RR 118
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 61
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 62 NMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLN 121
Query: 204 HVWRR 208
++ +
Sbjct: 122 KIFEK 126
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-M 142
+RS+++L+ ++ ++ R V+ LL G++V NG A ++L+ + D V+ ++ M
Sbjct: 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVL-CVNG--AEQVLDAMAEEDYDAVIVDLHM 68
Query: 143 PCLSGVALLS--KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
P ++G+ +L ++M + PV+++S+ + + C GA FL KP+
Sbjct: 69 PGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 90 VLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS 146
VLL++ + R + N G Y+ E N + + I +DL + I L++ ++ P
Sbjct: 7 VLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIXDIAFPVEKE 65
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206
G+ +LS I ++ N PVI+ + D+ G L D+++KP L+N + V
Sbjct: 66 GLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125
Query: 207 RRCH 210
+ C
Sbjct: 126 KICQ 129
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+ + + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+ + + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPC 144
++ V +V++++ R +A +L G+ V + D+ N + LV MP
Sbjct: 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGV-LVTXLRMPD 59
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+SGV LL + K N+P I+++ + + + + GAVDF+ KP
Sbjct: 60 MSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPC 144
++ V +V++++ R +A +L G+ V + D+ N + LV MP
Sbjct: 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGV-LVTDLRMPD 59
Query: 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+SGV LL + K N+P I+++ + + + + GAVDF+ KP
Sbjct: 60 MSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V++ + R +V LL+ G+ V EA +G+ A L+ V++ MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+ + + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+VE+++ + LL GYE + GL A I + N DL+L ++ +P +SG
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ + + ++PV+ +++ G + G ++ KPI
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VLLVE+ S + +++ Y++ G A + +E + ++L +P +SG
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQL-IILDLKLPDMSGE 64
Query: 149 ALLSKIMSHKTRKNLP--VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+L I + ++P VI+ ++ S+ L + KGA DFL KPI + LK
Sbjct: 65 DVLDWI----NQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLK 113
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V N + + V LL+ G+ V +A +G+ A L+ V+++ MP
Sbjct: 3 KELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQ--AGGYGFVISDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
+ G+ LL I + LPV+M+++ + GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+LK+L+VE+D R ++ ++ N EV A +G + ++ + D+++T++ P L
Sbjct: 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG--LHAPDVIITDIRXPKL 64
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G+ L +I + + VI++S+ K + G FL KPI L
Sbjct: 65 GGLEXLDRIKAGGAKPY--VIVISAFSEXKYFIKAIELGVHLFLPKPIEPGRL 115
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VL+V+++ + +++ L+ G+EV ATNG QA + T ++L P G
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-TRPDAVILDVXXPGXDGF 83
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+L ++ + + P + +++ DS+ L+ G D++ KP E+ + + RR
Sbjct: 84 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 86 RSLKVLLVENDDSTRHVVAAL------LRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139
R ++VL+V++ R V+ + ++ G+ A +GL+A + +L D++
Sbjct: 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGF----AKDGLEAVEKAIELKP--DVITM 77
Query: 140 EV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG--LVFKCLSKGAVDFLVKP 192
++ MP L+G+ L IM + VIM+SSL G + + L GAVDF+ KP
Sbjct: 78 DIEMPNLNGIEALKLIMKKAPTR---VIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLV-LTEVMPCLS 146
+ VL++E+D R ++ L G +V A G +A+K+L + H ++V L ++P ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLXLLLPDVN 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
G+ +L I VI+++ ++ + + GA DFL KP E++
Sbjct: 59 GLEILKWIKERSPETE--VIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIE 109
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VL+V++++S ++A+L GY A +A K +++L + +VL MP GV
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPV-IVLDVWMPDGDGV 61
Query: 149 ALLSKIMSHKTRKNLP---VIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
+ I ++N P VI+++ S+ K + KGA +FL KP
Sbjct: 62 NFIDFI-----KENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKP 103
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCL 145
++VL V++ R ++ ++ + V A + L A +++ + L L MP +
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDV-LTLDVEMPRM 62
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMG--LVFKCLSKGAVDFLVKP---IRKNEL 198
G+ L K+M + +PV+M+SSL G + + L GA+DF+ KP IR+ L
Sbjct: 63 DGLDFLEKLMR---LRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGML 117
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCL 145
+++VL+VE++ ++ L+ + V +G + + L D+V+ ++M P
Sbjct: 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMA--LNEPFDVVILDIMLPVH 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G +L + ++ N PV+M+++L + K L+ GA D+L KP EL
Sbjct: 60 DGWEILKSM--RESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLREL 110
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+++ D +R + L + Y V E+ N +A + ++ +H DLV+ + + +
Sbjct: 5 KILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQIDH--HHPDLVILDXDIIGENS 61
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L K+ K KN+P+I++ S + + L GA D+L KP +N+L
Sbjct: 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 114 VTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI---MSHKTRKNLPVIMMSS 170
+ A NG ++LE+ I L+L +MP L G+A+L +I H+ VIM+++
Sbjct: 31 IGTAYNGQDCLQMLEEKRPDI-LLLXIIMPHLDGLAVLERIRAGFEHQPN----VIMLTA 85
Query: 171 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ K + GA F++KP +++NL H+
Sbjct: 86 FGQEDVTKKAVELGASYFILKPF---DMENLAHHI 117
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ + R ++ L+ GYE+ A NG +A K + + DLV+ ++ MP +SG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF--FSGNYDLVILDIEMPGISG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD-FLVKPIRKNELK 199
+ + +I K +K+ +I++++ LS A D ++VK +ELK
Sbjct: 61 LEVAGEI--RKKKKDAKIILLTAYSHYR---SDLSSWAADEYVVKSFNFDELK 108
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 114 VTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI---MSHKTRKNLPVIMMSS 170
+ A NG ++LE+ I L+L +MP L G+A+L +I H+ VIM+++
Sbjct: 31 IGTAYNGQDCLQMLEEKRPDI-LLLDIIMPHLDGLAVLERIRAGFEHQPN----VIMLTA 85
Query: 171 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
+ K + GA F++KP +++NL H+
Sbjct: 86 FGQEDVTKKAVELGASYFILKPF---DMENLAHHI 117
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
VL+VE++ + R + L G V EA LQ +LE T DL++ ++ +P G+
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAET-LQR-GLLEAATRKPDLIILDLGLPDGDGI 61
Query: 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208
+ + + +PVI++S+ L GA D+L KP EL+ + RR
Sbjct: 62 EFIRDL---RQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S K+L+VE+D + + + L G+ V E T+G + + + + ++ ++ +
Sbjct: 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQN 64
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G + K+ KN+P++++ + D F+ L A +++ KP+ ++L
Sbjct: 65 GYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-FRKLKAHADEYVAKPVDADQL 115
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+LLVE++ V ++++ G+ + A NG++A + ++ DLVL +V MP L G
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAIN--SSSYDLVLMDVCMPVLDG 67
Query: 148 VALLSKIMSHKTRKN--------------------------LPVIMMSSLDSMGLVFKCL 181
+ I S++ N LP+I M++ +C
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 182 SKGAVDFLVKPIRKNELKNLWQH 204
+ G F+ KP+ +L+ Q
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQ 150
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149
V +V+ T V L G+ V A N +A+ L IDLV +V +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--REKIDLVFVDVFEGEESLN 64
Query: 150 LLSKIMSHKTRKNLP---VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
L+ +I R+ P V ++S+ L+ + GAVD+++KP R + L
Sbjct: 65 LIRRI-----REEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VL+V++++S ++A+L GY A +A K +++L + +VL P GV
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPV-IVLDVWXPDGDGV 60
Query: 149 ALLSKIMSHKTRKNLP---VIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193
+ I ++N P VI+++ S+ K + KGA +FL KP
Sbjct: 61 NFIDFI-----KENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPF 103
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 113 EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172
+ N ++ IL+DL VMP + G+ LL+ + +++P+I++S+ +
Sbjct: 54 QAVAVANQIKPTVILQDL----------VMPGVDGLTLLAAYRGNPATRDIPIIVLSTKE 103
Query: 173 SMGLVFKCLSKGAVDFLVK 191
+ + GA D+LVK
Sbjct: 104 EPTVKSAAFAAGANDYLVK 122
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ LK L+V+ + R +V LL+ G+ V EA +G+ A L+ V+++ P
Sbjct: 3 KELKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNXP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203
G+ LL I + LPV+ +++ + GA ++VKP L+
Sbjct: 61 NXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLN 120
Query: 204 HVWRR 208
++ +
Sbjct: 121 KIFEK 125
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 141 VMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191
VMP L G+ L+ + S+ +++P+I++S+ + + + GA D+LVK
Sbjct: 70 VMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 114 VTEATNGLQAWKILEDLTNHI-DLVLTEV-MPCLSGVALLSKIMSHKTRKNLP--VIMMS 169
V EA +G A LE + H+ D+ L + MP + G + + + S++ LP V+++S
Sbjct: 44 VGEADDGAAA---LELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYE----LPTRVLLIS 96
Query: 170 SLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
+ D +V++ L +GA FL+K + E+
Sbjct: 97 AHDEPAIVYQALQQGAAGFLLKDSTRTEI 125
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKIL--EDLTNHID-----LV 137
S+ ++ +E+D ++ +R G E+ T+G A L +D + + LV
Sbjct: 4 SVTIVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLV 63
Query: 138 LTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKN 196
L ++ +P +G+ +L + + + PV+++++ D + +C GA ++ KP+
Sbjct: 64 LLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYE 123
Query: 197 ELKN 200
N
Sbjct: 124 NFAN 127
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S K+L+VE+D + + + L G+ V E T+G + + + + ++ ++ +
Sbjct: 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQN 64
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G + K+ KN+P++++ + D K L A +++ KP+ ++L
Sbjct: 65 GYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRK-LKAHADEYVAKPVDADQL 115
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ + R ++ L+ GYE+ A NG +A K + + DLV+ ++ P +SG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF--FSGNYDLVILDIEXPGISG 60
Query: 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199
+ + +I K +K+ +I++++ S A +++VK +ELK
Sbjct: 61 LEVAGEI--RKKKKDAKIILLTAYSHYRSDXS--SWAADEYVVKSFNFDELK 108
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+++VL+VE++ ++ L+ + V +G + L D+V+ ++ +P
Sbjct: 2 NVRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEG--XYXALNEPFDVVILDIXLPVH 59
Query: 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G +L ++ N PV+ +++L + K L+ GA D+L KP EL
Sbjct: 60 DGWEILKS--XRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLREL 110
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++L+V++D + +L GYEV AT G KI + N L L + +P
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFN---LALFXIKLPDXE 61
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G LL K +HK R I ++ S+ L+ GA ++ KP+ +L
Sbjct: 62 GTELLEK--AHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDL 111
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S K+L+VE+D + + + L G+ V E T+G + + + + ++ ++ +
Sbjct: 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQN 64
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
G + K+ KN+P++++ + D K L A + + KP+ ++L
Sbjct: 65 GYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRK-LKAHADEAVAKPVDADQL 115
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS-- 146
K+L+++ D + L G + A N +A I + +N DL+ E++ LS
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEA--IGKIFSNKYDLIFLEII--LSDG 61
Query: 147 -GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205
G L KI + T P++ + ++ + L+ G D+L+KP+ L + +
Sbjct: 62 DGWTLCKKIRNVTT---CPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAI 118
Query: 206 WRR 208
RR
Sbjct: 119 LRR 121
>pdb|3I09|A Chain A, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
pdb|3I09|B Chain B, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
Length = 375
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 355 PIKLVGTKKTNRLDLGSSKLSEQIDRGQLDL 385
PI++V N+ D+ +SK E DRG LDL
Sbjct: 44 PIEVVYADHQNKADIAASKAREWXDRGGLDL 74
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHID-LVLTEVMPCLS 146
+ VL++E+D R ++ L G +V A G +A+K+L + H + ++L ++P ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVN 58
Query: 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192
G+ +L I VI+++ ++ + + GA DFL KP
Sbjct: 59 GLEILKWIKERSPETE--VIVITGHGTIKTAVEAMKMGAYDFLTKP 102
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
++LPV++ ++ + L + + +GA DF+VKP +L
Sbjct: 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKL 116
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 90 VLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKIL--------EDLTNHIDLVLT 139
+L+VE+ D LL+ G + G QA L D+ ++L
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL 68
Query: 140 EV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198
++ +P G +L +I + K +PV++M++ + + C S ++VKP+ + L
Sbjct: 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRL 128
Query: 199 KNLWQ 203
Q
Sbjct: 129 TETVQ 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,062,682
Number of Sequences: 62578
Number of extensions: 679310
Number of successful extensions: 1185
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 145
length of query: 780
length of database: 14,973,337
effective HSP length: 106
effective length of query: 674
effective length of database: 8,340,069
effective search space: 5621206506
effective search space used: 5621206506
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)