Query 004001
Match_columns 780
No_of_seqs 780 out of 2866
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 15:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 6.3E-21 1.4E-25 198.5 16.4 120 88-211 1-121 (229)
2 PRK11091 aerobic respiration c 99.8 7.4E-20 1.6E-24 219.3 21.6 196 2-208 436-645 (779)
3 PRK11466 hybrid sensory histid 99.8 1.3E-19 2.7E-24 220.3 22.2 195 2-208 598-800 (914)
4 PRK15347 two component system 99.8 1.2E-19 2.6E-24 220.1 21.4 205 2-208 550-812 (921)
5 TIGR02956 TMAO_torS TMAO reduc 99.8 1.4E-19 3E-24 220.9 21.7 194 3-207 618-822 (968)
6 PRK10841 hybrid sensory kinase 99.8 5E-19 1.1E-23 216.5 23.1 121 86-210 800-921 (924)
7 PRK11107 hybrid sensory histid 99.8 8.4E-19 1.8E-23 212.5 22.7 121 86-208 666-787 (919)
8 PRK09959 hybrid sensory histid 99.8 1.3E-18 2.8E-23 217.5 21.7 196 3-208 871-1076(1197)
9 COG2204 AtoC Response regulato 99.8 8.4E-18 1.8E-22 189.2 16.9 120 87-210 4-124 (464)
10 COG4753 Response regulator con 99.8 7.1E-18 1.5E-22 189.5 14.7 122 87-212 1-126 (475)
11 PRK13837 two-component VirA-li 99.7 5E-17 1.1E-21 197.0 22.2 197 3-209 614-815 (828)
12 PF00072 Response_reg: Respons 99.7 5E-17 1.1E-21 146.6 15.8 110 90-203 1-112 (112)
13 COG4565 CitB Response regulato 99.7 3.3E-17 7.2E-22 165.9 14.7 122 88-213 1-125 (224)
14 COG4566 TtrR Response regulato 99.7 3.3E-17 7.2E-22 163.2 13.5 121 88-212 5-126 (202)
15 PF06203 CCT: CCT motif; Inte 99.7 2.6E-18 5.6E-23 133.8 2.3 45 725-769 1-45 (45)
16 COG3437 Response regulator con 99.7 1.2E-16 2.6E-21 172.6 13.3 122 86-209 13-136 (360)
17 PRK13557 histidine kinase; Pro 99.7 9.2E-16 2E-20 173.7 20.8 195 2-207 330-534 (540)
18 COG0784 CheY FOG: CheY-like re 99.7 1.5E-15 3.3E-20 140.3 17.2 119 86-208 4-126 (130)
19 COG2197 CitB Response regulato 99.7 1.5E-15 3.3E-20 156.2 16.6 118 88-209 1-121 (211)
20 KOG0519 Sensory transduction h 99.7 4.6E-16 9.9E-21 187.2 14.3 181 24-207 599-785 (786)
21 PLN03029 type-a response regul 99.6 4E-15 8.8E-20 153.9 17.3 124 86-209 7-149 (222)
22 COG3706 PleD Response regulato 99.6 2.3E-15 5E-20 168.4 15.8 123 86-210 131-254 (435)
23 PRK10046 dpiA two-component re 99.6 1E-14 2.2E-19 150.0 17.4 121 87-211 4-127 (225)
24 PRK10816 DNA-binding transcrip 99.6 1.1E-14 2.4E-19 146.7 17.1 118 88-209 1-119 (223)
25 PRK11173 two-component respons 99.6 1.4E-14 3E-19 148.1 17.4 118 87-209 3-121 (237)
26 PRK10161 transcriptional regul 99.6 1.7E-14 3.7E-19 146.0 17.4 119 88-208 3-122 (229)
27 PRK09836 DNA-binding transcrip 99.6 1.7E-14 3.6E-19 145.9 17.3 117 88-208 1-118 (227)
28 PRK10529 DNA-binding transcrip 99.6 1.8E-14 3.9E-19 145.2 17.4 117 88-209 2-119 (225)
29 TIGR02154 PhoB phosphate regul 99.6 2.2E-14 4.8E-19 143.3 17.1 120 88-209 3-123 (226)
30 PRK10643 DNA-binding transcrip 99.6 2.9E-14 6.2E-19 142.3 17.9 119 88-210 1-120 (222)
31 PRK10766 DNA-binding transcrip 99.6 3.2E-14 6.8E-19 143.0 17.3 118 88-210 3-121 (221)
32 PRK10336 DNA-binding transcrip 99.6 4E-14 8.7E-19 141.2 16.9 118 88-209 1-119 (219)
33 PRK09468 ompR osmolarity respo 99.6 4.3E-14 9.4E-19 144.2 17.0 119 87-209 5-124 (239)
34 PRK11083 DNA-binding response 99.6 5.2E-14 1.1E-18 141.0 16.7 119 87-209 3-122 (228)
35 PRK10701 DNA-binding transcrip 99.6 6.6E-14 1.4E-18 143.2 17.3 117 88-209 2-119 (240)
36 PRK10430 DNA-binding transcrip 99.6 7.4E-14 1.6E-18 144.7 17.3 120 88-209 2-124 (239)
37 TIGR03787 marine_sort_RR prote 99.6 8.9E-14 1.9E-18 140.3 17.4 117 89-209 2-121 (227)
38 COG3947 Response regulator con 99.6 1.1E-14 2.3E-19 153.1 10.9 116 88-209 1-117 (361)
39 PRK10955 DNA-binding transcrip 99.6 9E-14 2E-18 140.2 16.7 116 88-209 2-118 (232)
40 PRK13856 two-component respons 99.6 1.1E-13 2.4E-18 142.2 17.2 116 89-209 3-120 (241)
41 PRK11517 transcriptional regul 99.5 1.2E-13 2.7E-18 138.4 16.9 116 88-208 1-117 (223)
42 CHL00148 orf27 Ycf27; Reviewed 99.5 1.6E-13 3.5E-18 139.1 17.8 119 86-209 5-124 (240)
43 PRK10840 transcriptional regul 99.5 1.3E-13 2.8E-18 140.2 16.5 118 86-207 2-125 (216)
44 TIGR02875 spore_0_A sporulatio 99.5 1.9E-13 4E-18 143.1 16.6 120 87-208 2-124 (262)
45 PRK09958 DNA-binding transcrip 99.5 2.7E-13 5.9E-18 134.3 15.9 117 88-208 1-119 (204)
46 TIGR01387 cztR_silR_copR heavy 99.5 3.7E-13 8.1E-18 133.9 16.7 116 90-209 1-117 (218)
47 PRK09581 pleD response regulat 99.5 1.2E-13 2.5E-18 153.4 13.4 120 86-208 154-274 (457)
48 PRK09483 response regulator; P 99.5 4.6E-13 9.9E-18 134.0 16.2 118 87-208 1-121 (217)
49 COG4567 Response regulator con 99.5 2.2E-13 4.7E-18 131.5 12.4 112 89-204 11-123 (182)
50 PRK09935 transcriptional regul 99.5 9.4E-13 2E-17 130.3 16.6 119 86-208 2-123 (210)
51 PRK10923 glnG nitrogen regulat 99.5 6.5E-13 1.4E-17 151.0 17.6 119 87-209 3-122 (469)
52 PRK15115 response regulator Gl 99.5 4.9E-13 1.1E-17 150.8 16.4 119 86-208 4-123 (444)
53 PRK14084 two-component respons 99.5 8.7E-13 1.9E-17 136.2 16.5 116 88-209 1-119 (246)
54 PRK10610 chemotaxis regulatory 99.5 2.7E-12 5.9E-17 113.9 17.5 122 86-209 4-127 (129)
55 PRK10365 transcriptional regul 99.5 6E-13 1.3E-17 149.6 15.6 120 86-209 4-124 (441)
56 PRK15479 transcriptional regul 99.5 2.1E-12 4.6E-17 128.8 17.3 118 88-209 1-119 (221)
57 PRK10360 DNA-binding transcrip 99.5 1.4E-12 3E-17 128.5 15.5 114 88-208 2-118 (196)
58 PRK10710 DNA-binding transcrip 99.4 3E-12 6.6E-17 129.8 17.9 118 88-210 11-129 (240)
59 PRK11697 putative two-componen 99.4 2.3E-12 5.1E-17 132.0 15.8 115 88-209 2-119 (238)
60 TIGR02915 PEP_resp_reg putativ 99.4 1.6E-12 3.5E-17 146.6 15.9 113 90-208 1-119 (445)
61 PRK11361 acetoacetate metaboli 99.4 1.8E-12 4E-17 146.4 16.3 117 88-208 5-122 (457)
62 PRK13435 response regulator; P 99.4 5E-12 1.1E-16 120.0 16.4 121 85-213 3-126 (145)
63 PRK09581 pleD response regulat 99.4 4.1E-12 8.9E-17 141.0 18.0 120 88-209 3-123 (457)
64 TIGR01818 ntrC nitrogen regula 99.4 2.6E-12 5.6E-17 145.6 16.2 115 90-208 1-116 (463)
65 PRK09390 fixJ response regulat 99.4 3.6E-12 7.7E-17 124.1 14.7 119 87-209 3-122 (202)
66 PRK12555 chemotaxis-specific m 99.4 3.4E-12 7.4E-17 139.5 15.8 115 88-207 1-129 (337)
67 PRK00742 chemotaxis-specific m 99.4 7.9E-12 1.7E-16 137.5 16.8 104 86-194 2-110 (354)
68 PRK15369 two component system 99.4 1.9E-11 4E-16 119.6 16.2 119 86-208 2-123 (211)
69 PRK10403 transcriptional regul 99.3 2.4E-11 5.2E-16 119.9 15.8 118 87-208 6-126 (215)
70 PRK10651 transcriptional regul 99.3 4.3E-11 9.2E-16 118.5 16.2 119 86-208 5-126 (216)
71 PRK13558 bacterio-opsin activa 99.3 1.6E-11 3.4E-16 145.2 14.7 118 87-208 7-127 (665)
72 PRK10100 DNA-binding transcrip 99.3 3.1E-11 6.6E-16 125.0 14.1 114 86-208 9-127 (216)
73 COG2201 CheB Chemotaxis respon 99.3 3.8E-11 8.2E-16 131.3 14.9 103 87-194 1-108 (350)
74 PRK11475 DNA-binding transcrip 99.3 5E-11 1.1E-15 122.6 13.3 105 100-208 3-115 (207)
75 COG3707 AmiR Response regulato 99.2 6.9E-11 1.5E-15 118.9 12.3 121 85-210 3-125 (194)
76 PRK09191 two-component respons 99.2 1.8E-10 3.8E-15 119.8 15.6 115 87-208 137-254 (261)
77 PRK15411 rcsA colanic acid cap 99.2 1.8E-10 4E-15 118.2 14.2 116 88-208 1-123 (207)
78 cd00156 REC Signal receiver do 99.2 3.3E-10 7.2E-15 95.5 13.2 111 91-205 1-112 (113)
79 PRK10693 response regulator of 99.0 1.4E-09 2.9E-14 117.9 12.5 89 116-208 2-92 (303)
80 PRK10618 phosphotransfer inter 99.0 5.6E-09 1.2E-13 128.1 14.9 120 3-141 606-735 (894)
81 PRK15029 arginine decarboxylas 98.9 4.9E-09 1.1E-13 125.5 13.6 121 88-212 1-137 (755)
82 COG3279 LytT Response regulato 98.9 9.5E-09 2.1E-13 108.4 10.9 116 87-208 1-119 (244)
83 PRK11107 hybrid sensory histid 98.6 3.1E-07 6.8E-12 112.1 15.9 169 22-206 481-650 (919)
84 COG3706 PleD Response regulato 97.9 9.4E-06 2E-10 92.0 5.1 91 112-208 13-104 (435)
85 PF06490 FleQ: Flagellar regul 97.6 0.00045 9.8E-09 64.5 9.5 105 89-205 1-107 (109)
86 smart00448 REC cheY-homologous 97.4 0.00093 2E-08 48.6 8.0 54 88-143 1-55 (55)
87 PRK02261 methylaspartate mutas 96.9 0.035 7.6E-07 54.0 15.2 118 86-207 2-135 (137)
88 cd02071 MM_CoA_mut_B12_BD meth 96.8 0.029 6.2E-07 53.2 13.5 106 94-203 10-121 (122)
89 TIGR00640 acid_CoA_mut_C methy 96.8 0.052 1.1E-06 52.5 15.0 110 94-207 13-128 (132)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 96.0 0.053 1.2E-06 51.0 10.2 106 100-208 6-114 (115)
91 cd02067 B12-binding B12 bindin 95.5 0.13 2.9E-06 47.9 10.6 93 94-191 10-109 (119)
92 KOG1601 GATA-4/5/6 transcripti 95.2 0.0084 1.8E-07 62.3 1.5 42 721-762 289-330 (340)
93 TIGR01501 MthylAspMutase methy 95.2 0.4 8.6E-06 46.7 12.8 109 95-207 13-133 (134)
94 PF09425 CCT_2: Divergent CCT 94.8 0.016 3.4E-07 41.0 1.4 25 723-748 2-26 (27)
95 COG2185 Sbm Methylmalonyl-CoA 94.5 0.82 1.8E-05 45.0 13.0 118 86-207 11-138 (143)
96 PRK15399 lysine decarboxylase 94.3 0.41 8.8E-06 58.2 12.7 118 88-211 1-126 (713)
97 COG4251 Bacteriophytochrome (l 94.1 0.065 1.4E-06 63.1 5.2 58 3-60 676-742 (750)
98 PRK15400 lysine decarboxylase 93.8 0.48 1E-05 57.6 12.1 117 88-210 1-125 (714)
99 TIGR03815 CpaE_hom_Actino heli 93.8 0.17 3.8E-06 55.4 7.8 83 111-205 1-85 (322)
100 cd02072 Glm_B12_BD B12 binding 93.3 1.7 3.6E-05 42.2 12.6 105 95-203 11-127 (128)
101 COG5002 VicK Signal transducti 93.1 0.11 2.4E-06 57.5 4.8 43 19-61 408-450 (459)
102 cd02070 corrinoid_protein_B12- 92.9 1.2 2.5E-05 45.9 11.7 98 88-190 83-190 (201)
103 PRK09303 adaptive-response sen 92.7 0.12 2.5E-06 58.0 4.4 58 2-59 311-377 (380)
104 COG4999 Uncharacterized domain 92.3 0.58 1.3E-05 44.7 7.6 107 85-202 9-121 (140)
105 PRK09426 methylmalonyl-CoA mut 91.6 2.5 5.3E-05 51.8 14.0 118 86-207 581-708 (714)
106 PF02310 B12-binding: B12 bind 90.7 5.2 0.00011 36.9 12.4 92 95-191 12-111 (121)
107 COG0512 PabA Anthranilate/para 89.8 0.99 2.1E-05 46.5 7.3 75 88-169 2-81 (191)
108 cd02069 methionine_synthase_B1 89.8 2.4 5.2E-05 44.3 10.4 101 88-192 89-202 (213)
109 TIGR02370 pyl_corrinoid methyl 89.3 2.7 5.9E-05 43.2 10.2 92 94-190 95-192 (197)
110 PRK03958 tRNA 2'-O-methylase; 89.2 6.8 0.00015 40.0 12.6 113 87-210 31-148 (176)
111 cd04728 ThiG Thiazole synthase 88.6 7.6 0.00017 41.6 13.0 116 87-208 93-226 (248)
112 PRK11086 sensory histidine kin 88.5 0.49 1.1E-05 54.3 4.6 58 2-60 473-536 (542)
113 PRK11006 phoR phosphate regulo 88.5 0.38 8.1E-06 54.4 3.6 58 2-59 355-423 (430)
114 PRK10604 sensor protein RstB; 88.4 0.47 1E-05 53.9 4.3 37 24-60 388-424 (433)
115 PF10087 DUF2325: Uncharacteri 87.7 3.2 6.8E-05 37.7 8.4 90 89-181 1-93 (97)
116 PRK00208 thiG thiazole synthas 87.6 8.7 0.00019 41.3 12.7 115 87-208 93-226 (250)
117 COG0643 CheA Chemotaxis protei 87.6 0.38 8.2E-06 58.7 3.0 45 19-63 533-577 (716)
118 PRK15053 dpiB sensor histidine 87.0 0.59 1.3E-05 54.2 4.1 36 24-59 504-539 (545)
119 PRK11360 sensory histidine kin 86.8 0.59 1.3E-05 53.7 3.9 58 2-59 539-601 (607)
120 PRK10364 sensor protein ZraS; 86.5 0.7 1.5E-05 52.6 4.3 58 2-59 386-448 (457)
121 PRK00043 thiE thiamine-phospha 86.4 10 0.00022 38.6 12.3 91 110-206 103-208 (212)
122 COG2205 KdpD Osmosensitive K+ 86.2 0.89 1.9E-05 55.5 4.9 59 3-61 814-881 (890)
123 PRK13560 hypothetical protein; 84.5 0.61 1.3E-05 56.2 2.6 35 23-59 769-803 (807)
124 PRK10815 sensor protein PhoQ; 84.1 1 2.2E-05 52.4 4.1 55 3-58 415-477 (485)
125 PF03602 Cons_hypoth95: Conser 83.2 6.7 0.00015 40.0 9.2 71 88-158 66-141 (183)
126 PRK08385 nicotinate-nucleotide 83.1 11 0.00023 41.3 11.1 95 90-189 157-257 (278)
127 PRK10755 sensor protein BasS/P 82.3 1.2 2.6E-05 48.6 3.6 56 3-58 286-349 (356)
128 PRK10490 sensor protein KdpD; 82.0 1.3 2.7E-05 55.7 4.0 59 2-60 816-883 (895)
129 PF02518 HATPase_c: Histidine 81.5 0.93 2E-05 41.1 2.0 35 25-59 76-110 (111)
130 PRK10549 signal transduction h 81.1 1.2 2.7E-05 50.1 3.3 57 2-59 390-458 (466)
131 PF02254 TrkA_N: TrkA-N domain 79.8 16 0.00034 33.4 9.6 95 86-190 20-115 (116)
132 cd02068 radical_SAM_B12_BD B12 79.0 14 0.00031 34.7 9.3 105 98-206 3-111 (127)
133 PRK09470 cpxA two-component se 78.9 1.8 4E-05 48.6 3.7 36 24-59 422-457 (461)
134 PF14097 SpoVAE: Stage V sporu 78.9 17 0.00038 36.9 10.0 83 90-172 3-95 (180)
135 PRK09467 envZ osmolarity senso 78.8 1.8 3.9E-05 48.5 3.6 36 24-59 398-433 (435)
136 PF05690 ThiG: Thiazole biosyn 78.7 20 0.00044 38.3 10.9 113 87-206 93-224 (247)
137 PRK01130 N-acetylmannosamine-6 78.2 27 0.00058 36.2 11.8 84 101-190 108-201 (221)
138 PF01408 GFO_IDH_MocA: Oxidore 78.2 31 0.00067 31.5 11.1 105 88-207 1-111 (120)
139 cd02065 B12-binding_like B12 b 78.0 11 0.00025 34.7 8.2 73 94-170 10-88 (125)
140 COG0642 BaeS Signal transducti 77.6 3.2 7E-05 42.9 4.8 59 3-61 266-331 (336)
141 TIGR02026 BchE magnesium-proto 76.7 26 0.00057 41.1 12.5 105 96-205 21-135 (497)
142 CHL00162 thiG thiamin biosynth 76.3 34 0.00074 37.1 11.9 98 103-207 129-239 (267)
143 PRK00278 trpC indole-3-glycero 75.5 55 0.0012 35.2 13.6 96 97-198 146-252 (260)
144 PRK11100 sensory histidine kin 75.4 2.7 5.8E-05 47.2 3.8 58 2-59 406-473 (475)
145 TIGR00095 RNA methyltransferas 74.7 29 0.00063 35.4 10.8 82 89-170 74-159 (189)
146 PRK06774 para-aminobenzoate sy 74.1 5.3 0.00011 40.6 5.2 73 90-169 2-79 (191)
147 PRK05749 3-deoxy-D-manno-octul 73.9 27 0.00058 39.5 11.3 110 86-207 261-387 (425)
148 PRK12724 flagellar biosynthesi 73.8 38 0.00083 39.3 12.4 104 86-191 251-367 (432)
149 PRK07649 para-aminobenzoate/an 73.6 5.4 0.00012 41.0 5.1 75 90-169 2-79 (195)
150 PRK10547 chemotaxis protein Ch 73.5 2.7 5.9E-05 51.1 3.4 41 22-62 486-526 (670)
151 PLN02871 UDP-sulfoquinovose:DA 73.4 34 0.00073 39.4 12.1 107 87-207 290-399 (465)
152 PF01729 QRPTase_C: Quinolinat 73.2 13 0.00029 37.6 7.7 94 90-189 53-153 (169)
153 PRK06895 putative anthranilate 73.2 13 0.00028 37.8 7.7 75 88-169 2-79 (190)
154 PF07688 KaiA: KaiA domain; I 73.0 16 0.00034 39.5 8.3 79 89-171 2-80 (283)
155 cd04729 NanE N-acetylmannosami 72.3 45 0.00097 34.5 11.6 83 103-191 114-206 (219)
156 TIGR00007 phosphoribosylformim 71.7 47 0.001 34.5 11.7 67 119-190 146-217 (230)
157 PRK11889 flhF flagellar biosyn 71.1 44 0.00095 38.7 11.9 108 86-194 268-388 (436)
158 TIGR00566 trpG_papA glutamine 71.0 13 0.00027 37.9 7.1 75 90-169 2-79 (188)
159 COG3852 NtrB Signal transducti 70.9 5 0.00011 44.4 4.3 56 3-60 294-355 (363)
160 PRK05703 flhF flagellar biosyn 70.7 47 0.001 38.4 12.4 105 86-191 250-365 (424)
161 cd03813 GT1_like_3 This family 70.5 35 0.00076 39.5 11.4 108 86-207 323-441 (475)
162 PRK08007 para-aminobenzoate sy 70.4 7.5 0.00016 39.6 5.3 88 90-186 2-92 (187)
163 cd00452 KDPG_aldolase KDPG and 70.1 32 0.0007 34.9 9.8 78 107-191 93-171 (190)
164 PRK12704 phosphodiesterase; Pr 70.0 7.8 0.00017 45.9 6.0 45 164-208 251-297 (520)
165 TIGR03088 stp2 sugar transfera 70.0 32 0.00069 37.7 10.5 107 87-207 229-337 (374)
166 TIGR03151 enACPred_II putative 69.9 42 0.0009 37.1 11.3 83 103-191 101-190 (307)
167 PRK05848 nicotinate-nucleotide 69.6 20 0.00044 39.0 8.6 95 90-190 155-256 (273)
168 COG0157 NadC Nicotinate-nucleo 69.6 22 0.00048 38.8 8.8 93 89-188 160-259 (280)
169 PRK10128 2-keto-3-deoxy-L-rham 69.6 48 0.001 36.1 11.4 99 103-204 9-111 (267)
170 PRK09835 sensor kinase CusS; P 69.0 4.5 9.7E-05 45.8 3.7 36 22-58 444-479 (482)
171 COG3290 CitA Signal transducti 68.8 4.6 0.0001 47.5 3.7 58 2-60 468-532 (537)
172 PRK10558 alpha-dehydro-beta-de 68.8 48 0.001 35.7 11.2 101 101-204 8-112 (256)
173 PRK05458 guanosine 5'-monophos 68.6 84 0.0018 35.3 13.3 97 89-191 113-230 (326)
174 PRK14974 cell division protein 68.6 54 0.0012 36.8 11.9 105 86-193 167-289 (336)
175 cd00331 IGPS Indole-3-glycerol 68.5 93 0.002 32.0 13.0 79 108-190 118-200 (217)
176 COG4191 Signal transduction hi 67.8 6.6 0.00014 46.7 4.7 56 2-58 537-600 (603)
177 cd04730 NPD_like 2-Nitropropan 67.8 75 0.0016 32.9 12.2 95 89-191 82-185 (236)
178 COG0742 N6-adenine-specific me 67.8 29 0.00063 35.8 8.8 54 87-141 66-122 (187)
179 PRK05637 anthranilate synthase 67.7 17 0.00037 37.9 7.3 77 88-169 2-80 (208)
180 TIGR02311 HpaI 2,4-dihydroxyhe 67.7 61 0.0013 34.7 11.7 84 119-205 21-106 (249)
181 cd04724 Tryptophan_synthase_al 67.2 56 0.0012 34.7 11.2 56 147-205 64-125 (242)
182 PRK13566 anthranilate synthase 66.9 23 0.00049 43.8 9.2 80 84-170 523-606 (720)
183 PRK05718 keto-hydroxyglutarate 66.5 65 0.0014 33.8 11.3 95 103-203 8-105 (212)
184 TIGR01334 modD putative molybd 66.4 23 0.00049 38.8 8.2 95 89-189 158-261 (277)
185 cd04726 KGPDC_HPS 3-Keto-L-gul 66.1 1E+02 0.0022 31.1 12.5 85 99-190 91-185 (202)
186 TIGR00693 thiE thiamine-phosph 65.9 38 0.00083 34.1 9.4 69 116-190 102-179 (196)
187 PRK07695 transcriptional regul 65.7 1.5E+02 0.0032 30.3 13.6 86 116-208 101-199 (201)
188 PRK15484 lipopolysaccharide 1, 65.7 97 0.0021 34.7 13.4 108 87-207 224-343 (380)
189 PRK13125 trpA tryptophan synth 65.7 70 0.0015 33.9 11.6 90 99-192 117-215 (244)
190 cd01948 EAL EAL domain. This d 65.6 24 0.00053 35.8 8.0 90 103-195 137-238 (240)
191 PRK10935 nitrate/nitrite senso 65.4 5.3 0.00012 46.4 3.4 35 25-59 525-559 (565)
192 cd03823 GT1_ExpE7_like This fa 65.3 90 0.002 32.7 12.4 65 134-207 263-328 (359)
193 PRK04302 triosephosphate isome 65.1 1.8E+02 0.0039 30.3 14.4 80 106-190 109-201 (223)
194 PLN02335 anthranilate synthase 64.9 15 0.00033 38.5 6.4 78 87-169 18-98 (222)
195 PRK14098 glycogen synthase; Pr 64.6 65 0.0014 37.8 12.1 113 87-208 336-451 (489)
196 CHL00101 trpG anthranilate syn 64.5 15 0.00032 37.5 6.0 75 90-169 2-79 (190)
197 cd00564 TMP_TenI Thiamine mono 64.4 53 0.0012 32.4 10.0 73 111-190 95-177 (196)
198 PRK12726 flagellar biosynthesi 64.3 75 0.0016 36.6 12.0 107 86-193 233-352 (407)
199 PRK11359 cyclic-di-GMP phospho 64.2 47 0.001 40.4 11.3 101 101-204 681-793 (799)
200 PRK13111 trpA tryptophan synth 64.1 22 0.00047 38.4 7.5 57 147-205 76-138 (258)
201 PRK11840 bifunctional sulfur c 64.1 34 0.00075 38.2 9.1 113 88-207 168-299 (326)
202 PRK05567 inosine 5'-monophosph 64.1 81 0.0017 37.1 12.8 102 86-190 239-359 (486)
203 TIGR03239 GarL 2-dehydro-3-deo 64.0 70 0.0015 34.4 11.2 83 119-204 21-105 (249)
204 PRK06543 nicotinate-nucleotide 63.7 59 0.0013 35.7 10.7 91 89-188 161-262 (281)
205 PRK14722 flhF flagellar biosyn 63.7 54 0.0012 37.4 10.8 88 88-177 168-262 (374)
206 TIGR01037 pyrD_sub1_fam dihydr 63.2 90 0.0019 33.9 12.2 60 148-210 223-288 (300)
207 PRK05581 ribulose-phosphate 3- 63.2 65 0.0014 33.0 10.6 99 103-204 101-216 (220)
208 PRK14723 flhF flagellar biosyn 62.8 65 0.0014 40.1 11.9 104 88-193 216-333 (767)
209 PRK10600 nitrate/nitrite senso 62.4 5.9 0.00013 46.7 3.1 50 3-59 507-556 (569)
210 PF01596 Methyltransf_3: O-met 62.0 28 0.0006 36.3 7.6 91 27-141 34-129 (205)
211 PRK06552 keto-hydroxyglutarate 61.9 80 0.0017 33.2 11.0 94 105-201 8-104 (213)
212 PRK07896 nicotinate-nucleotide 61.6 43 0.00092 36.9 9.2 94 90-189 173-272 (289)
213 cd04962 GT1_like_5 This family 61.5 68 0.0015 34.6 10.9 106 88-207 228-335 (371)
214 TIGR00343 pyridoxal 5'-phospha 61.5 56 0.0012 36.0 9.9 61 146-209 184-251 (287)
215 PF09936 Methyltrn_RNA_4: SAM- 61.2 71 0.0015 33.0 10.0 100 88-195 43-162 (185)
216 PRK07428 nicotinate-nucleotide 61.2 38 0.00082 37.3 8.7 95 89-189 168-269 (288)
217 cd03820 GT1_amsD_like This fam 61.0 1.3E+02 0.0027 31.1 12.4 107 87-207 209-318 (348)
218 COG2200 Rtn c-di-GMP phosphodi 60.4 66 0.0014 34.3 10.4 115 87-204 121-251 (256)
219 PRK09016 quinolinate phosphori 60.4 28 0.0006 38.5 7.5 91 90-189 182-278 (296)
220 PRK10841 hybrid sensory kinase 60.2 63 0.0014 41.0 11.7 147 23-208 631-778 (924)
221 PRK05670 anthranilate synthase 60.0 21 0.00046 36.1 6.3 89 90-186 2-92 (189)
222 PF01081 Aldolase: KDPG and KH 60.0 26 0.00056 36.4 6.9 59 138-200 36-95 (196)
223 PF07652 Flavi_DEAD: Flaviviru 59.7 36 0.00078 33.9 7.5 87 86-172 32-136 (148)
224 PRK06731 flhF flagellar biosyn 59.6 86 0.0019 34.2 11.1 103 87-191 103-219 (270)
225 PRK04180 pyridoxal biosynthesi 59.6 41 0.00089 37.1 8.5 62 146-210 190-258 (293)
226 PF00534 Glycos_transf_1: Glyc 59.4 86 0.0019 30.1 10.2 110 86-209 46-159 (172)
227 TIGR00262 trpA tryptophan synt 59.3 91 0.002 33.6 11.2 57 147-205 74-136 (256)
228 COG2022 ThiG Uncharacterized e 59.3 65 0.0014 34.6 9.6 113 87-206 100-231 (262)
229 PRK15320 transcriptional activ 59.2 27 0.0006 36.5 6.7 104 89-202 3-109 (251)
230 PRK10669 putative cation:proto 59.1 85 0.0018 37.4 11.9 107 86-206 439-547 (558)
231 PRK07259 dihydroorotate dehydr 59.0 1.3E+02 0.0028 32.7 12.5 59 148-209 223-287 (301)
232 PTZ00314 inosine-5'-monophosph 58.7 1.2E+02 0.0025 36.0 12.8 31 161-191 343-373 (495)
233 PRK07765 para-aminobenzoate sy 58.4 30 0.00065 36.1 7.2 79 88-170 1-84 (214)
234 TIGR03449 mycothiol_MshA UDP-N 57.8 1.4E+02 0.003 33.1 12.7 107 88-207 253-367 (405)
235 PRK07114 keto-hydroxyglutarate 57.7 1.1E+02 0.0024 32.4 11.2 93 106-201 11-107 (222)
236 TIGR00064 ftsY signal recognit 57.4 86 0.0019 34.0 10.7 102 86-190 99-224 (272)
237 PRK12723 flagellar biosynthesi 57.0 1.4E+02 0.0031 34.2 12.8 119 86-206 205-336 (388)
238 cd03819 GT1_WavL_like This fam 57.0 1.7E+02 0.0037 31.2 12.9 107 87-206 216-328 (355)
239 cd04727 pdxS PdxS is a subunit 56.8 84 0.0018 34.6 10.3 62 146-210 181-249 (283)
240 cd01568 QPRTase_NadC Quinolina 56.6 52 0.0011 35.7 8.8 95 89-190 153-254 (269)
241 PRK06978 nicotinate-nucleotide 56.6 61 0.0013 35.8 9.3 91 89-188 178-274 (294)
242 PRK06559 nicotinate-nucleotide 56.5 63 0.0014 35.7 9.4 91 89-188 169-266 (290)
243 cd03801 GT1_YqgM_like This fam 56.5 1.5E+02 0.0033 30.5 12.1 107 87-207 230-340 (374)
244 TIGR02082 metH 5-methyltetrahy 55.8 67 0.0015 42.0 10.9 99 88-190 733-844 (1178)
245 PRK03659 glutathione-regulated 55.2 71 0.0015 38.6 10.5 96 86-191 422-518 (601)
246 PRK01911 ppnK inorganic polyph 55.2 1.1E+02 0.0024 33.6 11.2 102 88-208 1-120 (292)
247 cd06338 PBP1_ABC_ligand_bindin 55.1 1.6E+02 0.0034 31.8 12.4 79 88-171 142-231 (345)
248 smart00052 EAL Putative diguan 55.1 66 0.0014 32.7 9.0 91 102-195 137-239 (241)
249 PF04321 RmlD_sub_bind: RmlD s 54.9 21 0.00046 38.5 5.6 55 88-144 1-63 (286)
250 PRK03708 ppnK inorganic polyph 54.5 79 0.0017 34.5 9.8 99 88-208 1-112 (277)
251 PRK06843 inosine 5-monophospha 54.3 1.9E+02 0.004 33.5 13.1 102 86-190 164-284 (404)
252 cd05212 NAD_bind_m-THF_DH_Cycl 54.3 38 0.00082 33.3 6.7 55 83-144 24-83 (140)
253 cd06346 PBP1_ABC_ligand_bindin 53.8 2E+02 0.0044 30.8 12.9 82 89-175 139-231 (312)
254 TIGR01163 rpe ribulose-phospha 53.3 50 0.0011 33.4 7.7 86 101-190 94-192 (210)
255 cd04722 TIM_phosphate_binding 53.3 94 0.002 30.1 9.4 56 132-190 135-198 (200)
256 KOG1562 Spermidine synthase [A 53.3 37 0.00081 37.6 6.9 61 89-151 147-214 (337)
257 PRK05458 guanosine 5'-monophos 53.1 36 0.00078 38.1 7.0 65 121-189 100-166 (326)
258 PRK08857 para-aminobenzoate sy 53.1 27 0.00059 35.6 5.7 86 90-185 2-91 (193)
259 PRK15427 colanic acid biosynth 53.0 1.5E+02 0.0032 33.7 12.2 107 87-207 253-369 (406)
260 cd03818 GT1_ExpC_like This fam 52.6 1.1E+02 0.0024 34.1 10.9 75 120-207 291-365 (396)
261 COG0626 MetC Cystathionine bet 52.6 68 0.0015 36.9 9.2 97 87-189 102-205 (396)
262 PLN02274 inosine-5'-monophosph 52.5 1.8E+02 0.0039 34.6 13.0 98 87-190 260-379 (505)
263 cd03313 enolase Enolase: Enola 52.2 91 0.002 35.9 10.3 106 94-203 210-347 (408)
264 PRK06096 molybdenum transport 51.9 51 0.0011 36.2 7.8 94 90-189 160-262 (284)
265 cd08185 Fe-ADH1 Iron-containin 51.6 86 0.0019 35.4 9.9 63 88-154 26-102 (380)
266 PF03060 NMO: Nitronate monoox 51.6 1.5E+02 0.0033 32.9 11.7 82 103-190 128-218 (330)
267 COG0673 MviM Predicted dehydro 51.2 1.8E+02 0.0038 31.6 12.0 107 86-205 2-114 (342)
268 PRK09490 metH B12-dependent me 51.1 71 0.0015 41.9 10.0 99 88-190 752-863 (1229)
269 COG0313 Predicted methyltransf 50.8 1.1E+02 0.0023 33.7 9.8 109 86-206 29-153 (275)
270 TIGR00308 TRM1 tRNA(guanine-26 50.7 2.2E+02 0.0049 32.5 13.0 91 89-186 71-168 (374)
271 COG4122 Predicted O-methyltran 50.5 71 0.0015 33.8 8.3 65 89-154 86-155 (219)
272 TIGR01182 eda Entner-Doudoroff 50.3 1.1E+02 0.0023 32.1 9.6 80 116-201 15-96 (204)
273 PLN02591 tryptophan synthase 50.2 73 0.0016 34.3 8.6 58 146-206 65-128 (250)
274 cd01573 modD_like ModD; Quinol 50.2 97 0.0021 33.7 9.6 69 115-190 188-257 (272)
275 PRK04184 DNA topoisomerase VI 50.1 76 0.0016 37.9 9.4 37 23-59 114-152 (535)
276 PRK10909 rsmD 16S rRNA m(2)G96 50.0 1.4E+02 0.003 31.0 10.3 81 88-171 77-160 (199)
277 PRK00811 spermidine synthase; 49.9 86 0.0019 34.1 9.2 65 88-155 101-178 (283)
278 PRK00748 1-(5-phosphoribosyl)- 49.9 82 0.0018 32.7 8.8 66 120-190 148-219 (233)
279 cd05844 GT1_like_7 Glycosyltra 49.6 2.5E+02 0.0054 30.2 12.8 107 87-207 219-335 (367)
280 TIGR02149 glgA_Coryne glycogen 49.1 1.9E+02 0.0041 31.6 11.9 107 88-207 230-351 (388)
281 PRK09922 UDP-D-galactose:(gluc 48.8 1.9E+02 0.0041 31.8 11.9 110 87-209 210-325 (359)
282 smart00387 HATPase_c Histidine 48.8 26 0.00057 29.9 4.2 36 23-58 74-109 (111)
283 TIGR01761 thiaz-red thiazoliny 48.6 1E+02 0.0022 34.8 9.7 102 87-207 3-113 (343)
284 cd06382 PBP1_iGluR_Kainate N-t 48.6 1.8E+02 0.0038 31.4 11.5 82 88-172 130-219 (327)
285 TIGR01425 SRP54_euk signal rec 48.3 1.5E+02 0.0032 34.7 11.1 83 86-171 127-223 (429)
286 PLN02316 synthase/transferase 48.2 1.9E+02 0.0042 37.3 13.0 114 87-209 869-999 (1036)
287 cd06329 PBP1_SBP_like_3 Peripl 48.1 1.7E+02 0.0036 31.9 11.3 78 88-170 144-235 (342)
288 TIGR00642 mmCoA_mut_beta methy 48.1 1.1E+02 0.0024 37.3 10.4 110 87-204 494-614 (619)
289 cd03825 GT1_wcfI_like This fam 47.9 56 0.0012 34.9 7.4 74 88-168 1-82 (365)
290 cd04740 DHOD_1B_like Dihydroor 47.9 2.8E+02 0.006 30.0 12.8 59 148-209 220-284 (296)
291 PRK13585 1-(5-phosphoribosyl)- 47.5 2.9E+02 0.0063 28.8 12.5 78 119-201 150-238 (241)
292 TIGR00736 nifR3_rel_arch TIM-b 47.3 2.1E+02 0.0045 30.5 11.4 94 92-190 116-219 (231)
293 cd01572 QPRTase Quinolinate ph 47.3 1.8E+02 0.0039 31.7 11.1 92 89-189 154-252 (268)
294 cd04949 GT1_gtfA_like This fam 47.1 1.7E+02 0.0036 31.9 11.1 66 134-207 279-344 (372)
295 cd08187 BDH Butanol dehydrogen 46.9 1.2E+02 0.0025 34.4 10.1 63 88-154 29-105 (382)
296 COG3836 HpcH 2,4-dihydroxyhept 46.5 1E+02 0.0022 33.3 8.6 94 102-198 7-103 (255)
297 PF06073 DUF934: Bacterial pro 46.5 1.6E+02 0.0036 27.9 9.3 76 132-209 18-96 (110)
298 cd00429 RPE Ribulose-5-phospha 46.5 65 0.0014 32.5 7.2 83 104-190 98-193 (211)
299 PRK12727 flagellar biosynthesi 46.4 1.3E+02 0.0029 36.1 10.5 83 88-173 381-470 (559)
300 PRK13146 hisH imidazole glycer 46.4 70 0.0015 33.2 7.6 44 88-139 2-47 (209)
301 KOG3040 Predicted sugar phosph 46.3 1.4E+02 0.0029 31.9 9.3 95 86-208 38-137 (262)
302 cd01424 MGS_CPS_II Methylglyox 45.9 1.8E+02 0.004 26.6 9.6 27 93-119 8-34 (110)
303 PRK10060 RNase II stability mo 45.2 1.7E+02 0.0037 35.6 11.7 101 101-204 544-656 (663)
304 TIGR00735 hisF imidazoleglycer 45.0 2.2E+02 0.0048 30.3 11.3 79 120-203 157-247 (254)
305 TIGR03704 PrmC_rel_meth putati 44.9 2.3E+02 0.0051 30.2 11.4 52 87-141 110-161 (251)
306 PRK04148 hypothetical protein; 44.7 60 0.0013 31.8 6.3 94 86-197 16-114 (134)
307 PLN02591 tryptophan synthase 44.4 2.7E+02 0.0057 30.1 11.7 98 90-192 110-219 (250)
308 cd04951 GT1_WbdM_like This fam 44.3 1.7E+02 0.0036 31.1 10.4 105 87-207 219-325 (360)
309 TIGR00959 ffh signal recogniti 44.2 1.8E+02 0.0039 33.8 11.1 84 86-172 127-224 (428)
310 PRK15490 Vi polysaccharide bio 44.2 3.3E+02 0.0072 33.0 13.4 102 87-202 429-532 (578)
311 PRK03562 glutathione-regulated 44.2 1.4E+02 0.003 36.4 10.6 94 86-189 422-516 (621)
312 PRK13143 hisH imidazole glycer 44.1 54 0.0012 33.7 6.2 44 88-139 1-44 (200)
313 PRK01231 ppnK inorganic polyph 44.1 1.8E+02 0.0038 32.1 10.6 100 89-207 6-117 (295)
314 PF04131 NanE: Putative N-acet 44.0 51 0.0011 34.3 5.9 69 111-190 45-117 (192)
315 cd04723 HisA_HisF Phosphoribos 43.9 60 0.0013 34.3 6.7 67 119-190 147-217 (233)
316 cd03806 GT1_ALG11_like This fa 43.8 2.5E+02 0.0053 32.1 12.1 107 87-207 273-391 (419)
317 cd03114 ArgK-like The function 43.8 73 0.0016 31.2 6.9 44 120-171 80-123 (148)
318 PRK09140 2-dehydro-3-deoxy-6-p 43.8 1.7E+02 0.0037 30.5 9.9 95 104-202 4-100 (206)
319 PRK10416 signal recognition pa 43.4 2.3E+02 0.005 31.5 11.4 107 86-194 141-270 (318)
320 PRK06015 keto-hydroxyglutarate 43.2 1.3E+02 0.0029 31.4 8.9 21 95-115 13-33 (201)
321 PRK03372 ppnK inorganic polyph 43.2 2.3E+02 0.005 31.5 11.3 101 89-208 7-128 (306)
322 TIGR00262 trpA tryptophan synt 42.7 2.6E+02 0.0057 30.1 11.4 100 90-192 119-228 (256)
323 PRK09860 putative alcohol dehy 42.6 1.6E+02 0.0035 33.5 10.3 64 88-155 32-108 (383)
324 PRK10867 signal recognition pa 42.6 2.3E+02 0.005 33.0 11.7 83 87-172 129-225 (433)
325 cd02809 alpha_hydroxyacid_oxid 42.5 3.1E+02 0.0068 29.9 12.2 89 101-193 162-259 (299)
326 cd08181 PPD-like 1,3-propanedi 42.5 1.9E+02 0.0041 32.4 10.8 63 88-154 26-102 (357)
327 PRK00771 signal recognition pa 42.4 3.2E+02 0.007 31.9 12.8 85 86-172 122-217 (437)
328 PF08047 His_leader: Histidine 42.3 10 0.00022 23.5 0.4 8 606-613 6-13 (16)
329 PRK02155 ppnK NAD(+)/NADH kina 42.2 2.3E+02 0.005 31.2 11.1 101 89-208 7-119 (291)
330 cd03799 GT1_amsK_like This is 42.2 2.7E+02 0.0059 29.5 11.6 107 87-207 210-326 (355)
331 PRK02083 imidazole glycerol ph 42.2 2.8E+02 0.006 29.4 11.5 78 121-203 156-245 (253)
332 cd04732 HisA HisA. Phosphorib 42.2 1.6E+02 0.0035 30.4 9.6 67 119-190 147-218 (234)
333 cd05013 SIS_RpiR RpiR-like pro 42.1 2.4E+02 0.0052 25.8 9.8 83 89-176 15-101 (139)
334 cd00381 IMPDH IMPDH: The catal 42.1 3.5E+02 0.0076 30.1 12.7 102 86-190 105-225 (325)
335 PF03102 NeuB: NeuB family; I 41.7 1E+02 0.0022 33.0 8.1 102 98-207 56-168 (241)
336 PRK13609 diacylglycerol glucos 41.4 3.2E+02 0.007 30.2 12.4 53 147-207 283-337 (380)
337 PRK01372 ddl D-alanine--D-alan 41.3 50 0.0011 35.5 5.8 53 86-140 3-63 (304)
338 PLN02716 nicotinate-nucleotide 41.1 1.1E+02 0.0025 34.0 8.5 96 90-188 173-287 (308)
339 PLN02935 Bifunctional NADH kin 41.0 3.2E+02 0.0068 32.7 12.4 103 87-208 194-318 (508)
340 cd03808 GT1_cap1E_like This fa 40.9 2.3E+02 0.0049 29.3 10.5 65 134-207 264-328 (359)
341 PLN02366 spermidine synthase 40.9 1.4E+02 0.003 33.1 9.2 67 88-156 116-194 (308)
342 cd03804 GT1_wbaZ_like This fam 40.8 1.8E+02 0.0039 31.4 10.1 105 88-208 222-326 (351)
343 cd06533 Glyco_transf_WecG_TagA 40.7 90 0.0019 31.4 7.1 78 86-170 45-132 (171)
344 TIGR00417 speE spermidine synt 40.6 1.8E+02 0.0039 31.3 9.8 65 88-155 97-173 (270)
345 PF14606 Lipase_GDSL_3: GDSL-l 40.6 41 0.00089 34.5 4.7 87 109-210 31-132 (178)
346 cd03795 GT1_like_4 This family 40.5 4.7E+02 0.01 27.6 13.6 107 87-207 218-331 (357)
347 TIGR01302 IMP_dehydrog inosine 40.4 3.3E+02 0.0071 31.7 12.6 101 87-190 236-355 (450)
348 PRK04457 spermidine synthase; 40.3 2.3E+02 0.0049 30.5 10.6 67 87-156 90-165 (262)
349 PRK06106 nicotinate-nucleotide 40.3 2.2E+02 0.0049 31.3 10.5 90 90-188 167-263 (281)
350 cd08189 Fe-ADH5 Iron-containin 40.3 1.9E+02 0.0042 32.5 10.5 63 88-154 27-102 (374)
351 PRK10742 putative methyltransf 40.3 1.5E+02 0.0033 32.1 9.0 55 87-144 110-176 (250)
352 PF04131 NanE: Putative N-acet 40.3 3.5E+02 0.0076 28.3 11.2 96 88-190 65-172 (192)
353 PRK07028 bifunctional hexulose 40.2 5.2E+02 0.011 29.8 14.1 101 102-208 98-212 (430)
354 cd00075 HATPase_c Histidine ki 40.1 40 0.00087 28.2 4.0 31 24-54 70-100 (103)
355 TIGR01815 TrpE-clade3 anthrani 39.9 86 0.0019 38.9 8.0 78 85-169 514-595 (717)
356 PF00218 IGPS: Indole-3-glycer 39.8 2.5E+02 0.0054 30.5 10.6 87 101-191 148-238 (254)
357 PLN02589 caffeoyl-CoA O-methyl 39.7 1.4E+02 0.0031 32.0 8.8 54 88-141 105-164 (247)
358 PLN02775 Probable dihydrodipic 39.7 3.9E+02 0.0085 29.6 12.2 101 88-195 12-138 (286)
359 cd03812 GT1_CapH_like This fam 39.6 2.9E+02 0.0062 29.5 11.3 107 87-208 223-331 (358)
360 cd03785 GT1_MurG MurG is an N- 39.3 4E+02 0.0087 28.6 12.5 55 147-207 262-323 (350)
361 CHL00200 trpA tryptophan synth 39.3 1.3E+02 0.0028 32.7 8.4 57 146-205 78-140 (263)
362 TIGR02855 spore_yabG sporulati 39.1 1.7E+02 0.0038 32.1 9.2 101 87-192 104-226 (283)
363 PF03808 Glyco_tran_WecB: Glyc 39.1 1.1E+02 0.0024 30.7 7.5 67 86-156 47-123 (172)
364 cd08186 Fe-ADH8 Iron-containin 39.0 1.6E+02 0.0036 33.3 9.7 63 88-154 27-103 (383)
365 PRK05718 keto-hydroxyglutarate 39.0 3.8E+02 0.0083 28.1 11.7 94 90-192 19-136 (212)
366 cd06355 PBP1_FmdD_like Peripla 38.8 2.9E+02 0.0063 30.2 11.4 77 88-167 134-222 (348)
367 PRK02649 ppnK inorganic polyph 38.5 2.1E+02 0.0046 31.7 10.1 101 89-208 3-124 (305)
368 PF02581 TMP-TENI: Thiamine mo 38.5 1.9E+02 0.0041 29.1 9.1 80 103-189 88-175 (180)
369 PRK06843 inosine 5-monophospha 38.4 1.2E+02 0.0026 35.1 8.4 55 132-189 164-220 (404)
370 cd06389 PBP1_iGluR_AMPA_GluR2 38.3 2.1E+02 0.0046 32.0 10.3 80 89-171 120-213 (370)
371 cd06360 PBP1_alkylbenzenes_lik 38.2 5.2E+02 0.011 27.6 13.6 79 89-170 136-225 (336)
372 cd01748 GATase1_IGP_Synthase T 38.2 85 0.0019 31.9 6.6 42 90-139 1-42 (198)
373 cd03115 SRP The signal recogni 38.1 1.6E+02 0.0034 28.9 8.3 84 87-173 28-125 (173)
374 PRK14607 bifunctional glutamin 38.1 57 0.0012 38.8 6.1 76 89-169 1-80 (534)
375 COG0134 TrpC Indole-3-glycerol 38.0 4.1E+02 0.0088 29.0 11.8 86 101-190 146-235 (254)
376 PLN02460 indole-3-glycerol-pho 38.0 3.5E+02 0.0076 30.6 11.7 89 100-190 219-316 (338)
377 PF00563 EAL: EAL domain; Int 37.9 54 0.0012 33.2 5.2 83 101-187 138-227 (236)
378 cd03807 GT1_WbnK_like This fam 37.8 3.5E+02 0.0076 28.1 11.4 63 134-207 269-331 (365)
379 PRK08883 ribulose-phosphate 3- 37.7 1.5E+02 0.0032 31.3 8.4 101 102-206 97-215 (220)
380 cd04726 KGPDC_HPS 3-Keto-L-gul 37.6 1.3E+02 0.0028 30.4 7.8 73 119-193 11-86 (202)
381 cd06326 PBP1_STKc_like Type I 37.6 3.5E+02 0.0075 28.9 11.6 82 88-174 137-229 (336)
382 PRK00654 glgA glycogen synthas 37.5 4.8E+02 0.01 30.1 13.4 109 87-208 311-428 (466)
383 PTZ00170 D-ribulose-5-phosphat 37.5 1.3E+02 0.0027 31.8 7.9 103 101-208 104-223 (228)
384 cd06341 PBP1_ABC_ligand_bindin 37.4 4.3E+02 0.0093 28.5 12.4 73 99-176 149-228 (341)
385 PRK13587 1-(5-phosphoribosyl)- 37.4 86 0.0019 33.2 6.7 66 121-190 151-220 (234)
386 COG0159 TrpA Tryptophan syntha 37.4 1.2E+02 0.0026 33.1 7.7 58 147-207 81-144 (265)
387 TIGR00734 hisAF_rel hisA/hisF 37.2 1.9E+02 0.0041 30.4 9.1 67 119-190 142-212 (221)
388 PRK00025 lpxB lipid-A-disaccha 37.0 3.4E+02 0.0074 29.8 11.7 104 88-207 221-340 (380)
389 PRK11036 putative S-adenosyl-L 37.0 3.2E+02 0.0069 28.8 11.0 65 88-155 67-136 (255)
390 PRK13170 hisH imidazole glycer 36.8 85 0.0018 32.2 6.3 44 88-139 1-44 (196)
391 PF00448 SRP54: SRP54-type pro 36.7 1.2E+02 0.0025 31.3 7.3 115 87-205 29-163 (196)
392 TIGR01305 GMP_reduct_1 guanosi 36.7 4.5E+02 0.0098 29.8 12.2 102 87-191 121-241 (343)
393 cd06388 PBP1_iGluR_AMPA_GluR4 36.7 2.4E+02 0.0052 31.7 10.5 55 101-158 141-202 (371)
394 cd06340 PBP1_ABC_ligand_bindin 36.7 3.8E+02 0.0083 29.2 11.9 75 89-168 146-231 (347)
395 PRK00726 murG undecaprenyldiph 36.6 4.9E+02 0.011 28.4 12.7 54 148-207 263-323 (357)
396 TIGR01823 PabB-fungal aminodeo 36.6 1.1E+02 0.0023 38.1 8.2 81 86-170 4-94 (742)
397 PRK09522 bifunctional glutamin 36.6 52 0.0011 39.2 5.4 75 88-169 2-84 (531)
398 cd06342 PBP1_ABC_LIVBP_like Ty 36.5 5.5E+02 0.012 27.3 14.2 76 89-169 137-223 (334)
399 KOG1203 Predicted dehydrogenas 36.3 95 0.0021 35.9 7.2 70 85-156 77-148 (411)
400 PF06283 ThuA: Trehalose utili 36.3 62 0.0013 33.4 5.3 75 89-169 1-88 (217)
401 cd01571 NAPRTase_B Nicotinate 36.3 3.4E+02 0.0073 30.0 11.3 68 120-188 198-270 (302)
402 PRK04885 ppnK inorganic polyph 36.2 2E+02 0.0044 31.2 9.3 76 100-208 17-93 (265)
403 cd00886 MogA_MoaB MogA_MoaB fa 36.2 78 0.0017 31.1 5.8 43 99-141 21-69 (152)
404 PF05582 Peptidase_U57: YabG p 36.1 1.7E+02 0.0037 32.2 8.7 101 87-192 105-227 (287)
405 PRK04128 1-(5-phosphoribosyl)- 36.0 2.7E+02 0.0059 29.4 10.1 67 118-190 30-101 (228)
406 PLN02781 Probable caffeoyl-CoA 35.8 1.4E+02 0.003 31.5 8.0 53 89-141 95-152 (234)
407 PF01564 Spermine_synth: Sperm 35.6 66 0.0014 34.3 5.5 67 88-156 101-179 (246)
408 cd08176 LPO Lactadehyde:propan 35.4 2.4E+02 0.0052 31.8 10.3 63 88-154 29-104 (377)
409 PF00478 IMPDH: IMP dehydrogen 35.3 2E+02 0.0043 32.7 9.4 68 119-191 108-177 (352)
410 PF00117 GATase: Glutamine ami 35.3 1.3E+02 0.0027 30.1 7.3 86 91-185 1-91 (192)
411 PLN02274 inosine-5'-monophosph 35.3 1.3E+02 0.0027 35.8 8.2 56 132-190 259-316 (505)
412 TIGR01305 GMP_reduct_1 guanosi 35.2 1.2E+02 0.0026 34.3 7.4 57 132-191 120-178 (343)
413 TIGR00078 nadC nicotinate-nucl 35.1 2.2E+02 0.0048 30.9 9.4 93 89-190 150-249 (265)
414 cd08178 AAD_C C-terminal alcoh 35.1 1.9E+02 0.0042 32.9 9.5 63 88-154 22-97 (398)
415 PRK01033 imidazole glycerol ph 35.0 2E+02 0.0044 30.8 9.1 66 120-190 154-225 (258)
416 PRK01395 V-type ATP synthase s 35.0 3.5E+02 0.0075 25.3 9.5 51 86-141 2-53 (104)
417 TIGR01303 IMP_DH_rel_1 IMP deh 35.0 1.3E+02 0.0027 35.5 8.1 67 118-189 224-292 (475)
418 cd08179 NADPH_BDH NADPH-depend 34.9 1.9E+02 0.004 32.7 9.3 63 88-154 24-100 (375)
419 PRK07107 inosine 5-monophospha 34.8 2E+02 0.0044 34.2 9.8 101 87-190 254-380 (502)
420 PLN02823 spermine synthase 34.6 1.2E+02 0.0026 34.1 7.5 53 88-143 128-187 (336)
421 cd03811 GT1_WabH_like This fam 34.6 3.7E+02 0.0079 27.6 10.8 65 134-207 264-328 (353)
422 PRK08185 hypothetical protein; 34.6 4.8E+02 0.01 28.7 12.0 102 109-212 10-121 (283)
423 cd00331 IGPS Indole-3-glycerol 34.5 3.3E+02 0.0072 28.0 10.4 57 146-205 59-117 (217)
424 cd02911 arch_FMN Archeal FMN-b 34.5 5E+02 0.011 27.5 11.8 91 92-190 121-219 (233)
425 PRK07206 hypothetical protein; 34.5 5.1E+02 0.011 29.2 12.8 21 187-207 148-180 (416)
426 cd06348 PBP1_ABC_ligand_bindin 34.5 3.4E+02 0.0074 29.3 11.0 65 98-167 152-223 (344)
427 PRK15454 ethanol dehydrogenase 34.5 1.8E+02 0.0038 33.3 9.0 63 88-154 50-125 (395)
428 COG1856 Uncharacterized homolo 34.4 3.2E+02 0.0068 29.5 9.9 99 92-194 118-254 (275)
429 TIGR01133 murG undecaprenyldip 34.3 6.1E+02 0.013 27.2 12.9 55 148-207 261-320 (348)
430 cd06349 PBP1_ABC_ligand_bindin 34.2 4.1E+02 0.0088 28.7 11.5 75 99-178 151-232 (340)
431 cd08551 Fe-ADH iron-containing 34.1 2.6E+02 0.0057 31.3 10.3 64 88-155 24-100 (370)
432 PRK05282 (alpha)-aspartyl dipe 34.1 1.8E+02 0.0039 31.1 8.4 63 87-156 31-99 (233)
433 PRK04161 tagatose 1,6-diphosph 34.0 2.8E+02 0.006 31.3 10.0 42 149-190 229-276 (329)
434 cd00381 IMPDH IMPDH: The catal 33.9 1.4E+02 0.0031 33.2 8.0 64 122-190 97-162 (325)
435 cd03817 GT1_UGDG_like This fam 33.9 4.7E+02 0.01 27.3 11.7 73 121-207 270-342 (374)
436 TIGR02095 glgA glycogen/starch 33.9 4.6E+02 0.0099 30.2 12.4 109 88-209 321-438 (473)
437 PRK05742 nicotinate-nucleotide 33.8 2.5E+02 0.0055 30.8 9.6 67 115-190 194-260 (277)
438 TIGR01142 purT phosphoribosylg 33.7 4.4E+02 0.0096 29.2 12.0 21 119-141 50-70 (380)
439 TIGR01302 IMP_dehydrog inosine 33.7 1.2E+02 0.0026 35.3 7.6 63 121-189 227-291 (450)
440 cd03814 GT1_like_2 This family 33.6 4.5E+02 0.0097 27.6 11.5 76 119-207 256-331 (364)
441 TIGR01859 fruc_bis_ald_ fructo 33.6 5.4E+02 0.012 28.2 12.2 108 94-207 111-246 (282)
442 KOG1601 GATA-4/5/6 transcripti 33.6 8.5 0.00018 39.8 -1.6 70 132-201 62-132 (340)
443 PRK10624 L-1,2-propanediol oxi 33.6 1.8E+02 0.0039 33.0 8.9 63 88-154 31-106 (382)
444 cd08194 Fe-ADH6 Iron-containin 33.5 2.9E+02 0.0062 31.2 10.5 63 88-154 24-99 (375)
445 cd01743 GATase1_Anthranilate_S 33.4 86 0.0019 31.4 5.7 76 90-170 1-79 (184)
446 COG1954 GlpP Glycerol-3-phosph 33.4 5.1E+02 0.011 26.8 10.9 95 89-188 26-170 (181)
447 PRK04128 1-(5-phosphoribosyl)- 33.4 1.6E+02 0.0034 31.1 7.9 67 117-190 142-210 (228)
448 PRK02645 ppnK inorganic polyph 33.3 2.7E+02 0.0058 30.8 9.9 102 88-207 4-114 (305)
449 PRK01581 speE spermidine synth 33.1 1.5E+02 0.0033 33.9 8.0 66 88-156 175-256 (374)
450 PF03328 HpcH_HpaI: HpcH/HpaI 33.0 3E+02 0.0065 28.5 9.8 86 117-205 7-106 (221)
451 TIGR03365 Bsubt_queE 7-cyano-7 33.0 4.1E+02 0.009 28.1 11.0 101 89-195 75-187 (238)
452 cd06359 PBP1_Nba_like Type I p 32.9 5.1E+02 0.011 28.0 12.0 48 119-169 174-221 (333)
453 PRK08072 nicotinate-nucleotide 32.9 3.5E+02 0.0075 29.7 10.5 93 89-190 160-259 (277)
454 PRK15128 23S rRNA m(5)C1962 me 32.7 3.6E+02 0.0079 31.0 11.2 54 88-141 244-301 (396)
455 PRK08318 dihydropyrimidine deh 32.5 4.9E+02 0.011 29.8 12.3 62 148-209 239-307 (420)
456 PRK07239 bifunctional uroporph 32.5 3.9E+02 0.0084 30.1 11.3 111 83-203 7-136 (381)
457 cd03802 GT1_AviGT4_like This f 32.3 6.1E+02 0.013 26.6 12.5 72 120-206 234-306 (335)
458 PRK12399 tagatose 1,6-diphosph 32.2 3.5E+02 0.0076 30.4 10.4 42 149-190 227-274 (324)
459 TIGR02472 sucr_P_syn_N sucrose 32.2 5.2E+02 0.011 29.5 12.4 95 104-207 307-405 (439)
460 cd06345 PBP1_ABC_ligand_bindin 32.1 4.6E+02 0.01 28.4 11.6 67 100-171 161-234 (344)
461 cd04724 Tryptophan_synthase_al 32.0 2E+02 0.0043 30.6 8.4 96 90-191 108-215 (242)
462 cd06330 PBP1_Arsenic_SBP_like 31.9 3.7E+02 0.0081 29.0 10.8 79 89-170 140-231 (346)
463 TIGR01579 MiaB-like-C MiaB-lik 31.9 2.5E+02 0.0055 32.0 9.8 93 97-205 10-107 (414)
464 cd03800 GT1_Sucrose_synthase T 31.9 5E+02 0.011 28.1 11.8 75 120-207 293-367 (398)
465 PRK05286 dihydroorotate dehydr 31.9 3.5E+02 0.0077 30.3 10.7 60 148-208 276-342 (344)
466 cd03798 GT1_wlbH_like This fam 31.7 4.1E+02 0.0088 27.5 10.7 66 134-208 279-344 (377)
467 cd08182 HEPD Hydroxyethylphosp 31.6 2.6E+02 0.0055 31.4 9.6 64 88-155 24-97 (367)
468 PLN00191 enolase 31.5 3.2E+02 0.007 32.1 10.6 108 93-204 239-380 (457)
469 PRK00994 F420-dependent methyl 31.5 3.2E+02 0.0069 29.7 9.4 78 109-192 29-116 (277)
470 cd06366 PBP1_GABAb_receptor Li 31.3 5.4E+02 0.012 27.9 12.0 58 99-159 151-217 (350)
471 PRK07807 inosine 5-monophospha 31.3 5E+02 0.011 30.7 12.2 102 86-190 238-358 (479)
472 PF13407 Peripla_BP_4: Peripla 31.2 2E+02 0.0043 29.5 8.1 67 99-171 16-89 (257)
473 KOG4175 Tryptophan synthase al 31.2 1.5E+02 0.0032 31.3 6.8 42 160-201 93-140 (268)
474 PRK02228 V-type ATP synthase s 31.2 4.2E+02 0.0091 24.4 9.3 73 88-170 1-78 (100)
475 TIGR01163 rpe ribulose-phospha 31.1 4.1E+02 0.0089 26.7 10.3 54 146-202 43-97 (210)
476 PRK04539 ppnK inorganic polyph 31.0 4.5E+02 0.0097 29.1 11.1 101 89-208 7-124 (296)
477 PRK08649 inosine 5-monophospha 30.7 6E+02 0.013 29.0 12.4 65 119-190 142-214 (368)
478 PF01959 DHQS: 3-dehydroquinat 30.7 4.2E+02 0.0091 30.2 10.8 46 162-207 123-169 (354)
479 PF02254 TrkA_N: TrkA-N domain 30.7 3.1E+02 0.0067 24.8 8.5 58 90-154 1-58 (116)
480 COG0421 SpeE Spermidine syntha 30.6 1.8E+02 0.004 31.9 8.0 67 87-156 100-178 (282)
481 cd06334 PBP1_ABC_ligand_bindin 30.5 7.7E+02 0.017 27.2 13.9 81 88-173 141-232 (351)
482 cd00758 MoCF_BD MoCF_BD: molyb 30.5 1.6E+02 0.0034 28.2 6.7 44 98-141 19-66 (133)
483 TIGR00853 pts-lac PTS system, 30.4 2.9E+02 0.0064 25.1 8.1 78 86-171 2-84 (95)
484 COG4192 Signal transduction hi 30.4 45 0.00098 39.0 3.3 59 2-60 604-667 (673)
485 PF06925 MGDG_synth: Monogalac 30.4 1.8E+02 0.0039 28.7 7.3 59 124-190 82-143 (169)
486 PRK03378 ppnK inorganic polyph 30.4 3.9E+02 0.0085 29.4 10.5 101 89-208 7-119 (292)
487 cd06332 PBP1_aromatic_compound 30.3 6.4E+02 0.014 26.7 12.1 53 119-174 174-226 (333)
488 PF13941 MutL: MutL protein 30.3 9.4E+02 0.02 28.4 14.0 119 86-208 75-209 (457)
489 COG1927 Mtd Coenzyme F420-depe 30.2 4.3E+02 0.0093 28.2 10.0 79 109-192 29-117 (277)
490 cd06356 PBP1_Amide_Urea_BP_lik 30.2 2.9E+02 0.0062 30.0 9.6 77 88-168 133-220 (334)
491 cd06296 PBP1_CatR_like Ligand- 30.1 2.5E+02 0.0055 28.7 8.7 63 99-170 17-86 (270)
492 TIGR03590 PseG pseudaminic aci 30.1 2.6E+02 0.0057 30.1 9.1 75 87-172 31-113 (279)
493 TIGR00696 wecB_tagA_cpsF bacte 30.1 1.6E+02 0.0035 29.9 7.0 66 86-155 47-121 (177)
494 cd02940 DHPD_FMN Dihydropyrimi 30.0 3.6E+02 0.0079 29.4 10.2 42 148-190 239-280 (299)
495 COG1454 EutG Alcohol dehydroge 30.0 3E+02 0.0065 31.6 9.7 63 88-154 30-105 (377)
496 PRK05567 inosine 5'-monophosph 30.0 1.7E+02 0.0037 34.4 8.1 64 121-189 230-295 (486)
497 PRK01362 putative translaldola 29.9 3.7E+02 0.008 28.4 9.8 87 103-192 93-185 (214)
498 COG5012 Predicted cobalamin bi 29.9 1.5E+02 0.0032 31.7 6.8 96 91-191 110-213 (227)
499 cd06358 PBP1_NHase Type I peri 29.9 3.5E+02 0.0075 29.2 10.1 79 88-171 133-222 (333)
500 PRK06801 hypothetical protein; 29.9 4.4E+02 0.0095 29.1 10.7 109 101-212 8-127 (286)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=6.3e-21 Score=198.46 Aligned_cols=120 Identities=29% Similarity=0.470 Sum_probs=114.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++|||||||+.++..|...|+..||+|..+.++.+|++.+.. . |||||+|+ ||+++|+++|++||+. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 479999999999999999999999999999999999999986 6 99999999 9999999999999966 56789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
|||+..+......++++||||||+|||.+.||.++|+.++||...
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999999999999999999999999999999999998754
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.84 E-value=7.4e-20 Score=219.31 Aligned_cols=196 Identities=20% Similarity=0.219 Sum_probs=155.0
Q ss_pred CCCChhhh--HHHHHHHhhhh----------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCC
Q 004001 2 NVDGKADK--RLQELNHCLQA----------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQ 69 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~~----------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~ 69 (780)
.|+|.|.. ...+|+..+.. .+.+-+++||++|++.|||.|.+.|.+|.|++|.+.+|+..........
T Consensus 436 ~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~ 515 (779)
T PRK11091 436 EDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDA 515 (779)
T ss_pred EecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccc
Confidence 36777654 23345544422 2334469999999999999999999999999999988875432211100
Q ss_pred CCCCCccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH
Q 004001 70 EQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148 (780)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGl 148 (780)
. .....+...++||||||++.++..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+
T Consensus 516 ---~-----~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G~ 585 (779)
T PRK11091 516 ---F-----DEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTGL 585 (779)
T ss_pred ---c-----ccccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCHH
Confidence 0 011223456899999999999999999999999999999999999999975 6799999999 9999999
Q ss_pred HHHHHHHhhcCCCC-ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 149 ALLSKIMSHKTRKN-LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 149 eLl~~IRs~~~~~~-iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++++.||+....+. +|||++|+.... ...+++.+|+++||.||++..+|...|.+++..
T Consensus 586 e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 586 DIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 99999986543355 489999987754 467899999999999999999999999988743
No 3
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.83 E-value=1.3e-19 Score=220.35 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=157.9
Q ss_pred CCCChhhh--HHHHHHHhhh-----hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCC
Q 004001 2 NVDGKADK--RLQELNHCLQ-----AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQG 74 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~-----~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~ 74 (780)
.|+|.|+. ...+|+..+. ..+.+-+++||++|++.|||.|.+.|.+|.|++|.+.+|+....+......
T Consensus 598 ~D~G~Gi~~~~~~~if~~f~~~~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~---- 673 (914)
T PRK11466 598 EDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTV---- 673 (914)
T ss_pred EECCCCCCHHHHHHHhchhhcCCCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccccccc----
Confidence 36788765 2233443332 223456699999999999999999999999999999888754322111100
Q ss_pred ccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHH
Q 004001 75 AMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSK 153 (780)
Q Consensus 75 ~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~ 153 (780)
.......+++||||||++.++..+..+|+..||.|..+.++.+|++.+.. ...|||||+|+ ||+++|+++++.
T Consensus 674 -----~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~~~~~~ 747 (914)
T PRK11466 674 -----NQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGITLARQ 747 (914)
T ss_pred -----ccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHHHHHHH
Confidence 01112356789999999999999999999999999999999999998864 24689999999 999999999999
Q ss_pred HHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||+. .+.+|||++|+........+++..|+++||.||++.++|..+|.++++.
T Consensus 748 lr~~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 748 LAQQ--YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred HHhh--CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 9764 5789999999999999999999999999999999999999999998754
No 4
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.83 E-value=1.2e-19 Score=220.13 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=158.4
Q ss_pred CCCChhhh--HHHHHHHhhhh-----CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCC---
Q 004001 2 NVDGKADK--RLQELNHCLQA-----GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQ--- 71 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~~-----~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~--- 71 (780)
.|+|+|.. ...+|+..+.. .+.+-+++||++|+++|||.|.++|.+|.|++|.+.+|+....+.......
T Consensus 550 ~D~G~Gi~~~~~~~if~~f~~~~~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~ 629 (921)
T PRK15347 550 EDTGCGIDIQQQQQIFTPFYQADTHSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEPLKGELSA 629 (921)
T ss_pred EEcCCCCCHHHHHHHhcCcccCCCCCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcccccccccc
Confidence 47888865 23344443322 234456999999999999999999999999999999987542211110000
Q ss_pred ----------------CC-----------------------------CccchhhhcccCCccEEEEEeCCHHHHHHHHHH
Q 004001 72 ----------------PQ-----------------------------GAMVCWERFLHLRSLKVLLVENDDSTRHVVAAL 106 (780)
Q Consensus 72 ----------------~~-----------------------------~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~l 106 (780)
+. +.............++||||||++..+..+..+
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~ 709 (921)
T PRK15347 630 PLALHRQLSAWGITCQPGHQNPALLDPELAYLPGRLYDLLQQIIQGAPNEPVINLPLQPWQLQILLVDDVETNRDIIGMM 709 (921)
T ss_pred hHHHHHHHHHcCCcccccccchhhcchhhhhcchHHHHHHHHHhhcCCCcccccCCCCcccCCEEEEeCCHHHHHHHHHH
Confidence 00 000000000112346899999999999999999
Q ss_pred HHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc--CCCCccEEEEecCCCHHHHHHHHHC
Q 004001 107 LRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGLVFKCLSK 183 (780)
Q Consensus 107 L~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~--~~~~iPIIvLSa~~~~e~~~~al~a 183 (780)
|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. ..+.+|||++|+..+.....+++++
T Consensus 710 L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~ 787 (921)
T PRK15347 710 LVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKA 787 (921)
T ss_pred HHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHC
Confidence 99999999999999999999986 7899999999 99999999999998642 2367999999999999999999999
Q ss_pred CCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 184 GAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 184 GAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|+++||.||++.++|..+|.++++.
T Consensus 788 G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 788 GMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 5
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.83 E-value=1.4e-19 Score=220.88 Aligned_cols=194 Identities=21% Similarity=0.211 Sum_probs=157.2
Q ss_pred CCChhhh--HHHHHHHhhhh-------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCC
Q 004001 3 VDGKADK--RLQELNHCLQA-------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~-------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~ 73 (780)
|+|+|.. ...+|+..+.. .+.+-+++||++|++.|||.|.+.|.+|.|++|.+.+|+....+.....
T Consensus 618 D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~---- 693 (968)
T TIGR02956 618 DTGCGIAEEEQATLFDAFTQADGRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSA---- 693 (968)
T ss_pred eCCCCCCHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccccc----
Confidence 6777764 23344444422 2334559999999999999999999999999999888875432111100
Q ss_pred CccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHH
Q 004001 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (780)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~ 152 (780)
. .........+||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++
T Consensus 694 ~-----~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g~~~~~ 766 (968)
T TIGR02956 694 T-----LTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDGVTLLQ 766 (968)
T ss_pred c-----cccccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHH
Confidence 0 01122345689999999999999999999999999999999999999986 7899999999 99999999999
Q ss_pred HHHhhcCCCC-ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 153 KIMSHKTRKN-LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 153 ~IRs~~~~~~-iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.||....... +|||++|+....+...+++..|+++||.||++..+|...|..++.
T Consensus 767 ~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 767 QLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred HHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9987543333 899999999999999999999999999999999999999998875
No 6
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.82 E-value=5e-19 Score=216.54 Aligned_cols=121 Identities=30% Similarity=0.480 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+|+|+++++.||+. .+.+|
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG~el~~~ir~~--~~~~p 875 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDGYRLTQRLRQL--GLTLP 875 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCCCC
Confidence 45789999999999999999999999999999999999999987 6799999999 9999999999999865 36799
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+....+...+++++|+++||.||++.++|..+|.+++++.+
T Consensus 876 II~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~r 921 (924)
T PRK10841 876 VIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR 921 (924)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999877653
No 7
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.81 E-value=8.4e-19 Score=212.51 Aligned_cols=121 Identities=26% Similarity=0.357 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.||+....+.+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 35789999999999999999999999999999999999999986 7899999999 99999999999998765567899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||++|+....+...+++++|+++||.||++..+|...|.+++..
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998887653
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.80 E-value=1.3e-18 Score=217.52 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=156.7
Q ss_pred CCChhhh--HHHHHHHhhhh-------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCC
Q 004001 3 VDGKADK--RLQELNHCLQA-------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~-------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~ 73 (780)
++|.|.. ...+|+..+.. .+.+-+++||++|++.|||.|.++|.+|.|++|.+.+|+..............
T Consensus 871 D~G~Gi~~~~~~~iF~~f~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~ 950 (1197)
T PRK09959 871 DSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAE 950 (1197)
T ss_pred EcCCCCCHHHHHHhhccccccccCCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccc
Confidence 6777764 22234433321 24455699999999999999999999999999999888754321111100000
Q ss_pred CccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHH
Q 004001 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (780)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~ 152 (780)
........++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++
T Consensus 951 ------~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~ 1022 (1197)
T PRK09959 951 ------QPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGFELTR 1022 (1197)
T ss_pred ------cccccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHH
Confidence 01111245789999999999999999999999999999999999999976 7899999999 99999999999
Q ss_pred HHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 153 KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.|+.. .+.+|||++|+..+.....++++.|+++||.||++.++|..+|.++++.
T Consensus 1023 ~i~~~--~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1023 KLREQ--NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred HHHhc--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 99754 4679999999999999999999999999999999999999999887643
No 9
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.76 E-value=8.4e-18 Score=189.17 Aligned_cols=120 Identities=31% Similarity=0.522 Sum_probs=113.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+|||||||+.+|..+..+|+..||.|..+.++.+|++++.. ..|||||+|+ ||++||++++++|++. .+.+||
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~~~Gl~ll~~i~~~--~~~~pV 79 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPGMDGLELLKEIKSR--DPDLPV 79 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhh--CCCCCE
Confidence 3479999999999999999999999999999999999999987 4799999999 9999999999999765 489999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|+||++.+.+.+++|++.||.|||.|||+++.|...|.+++....
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999987643
No 10
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.75 E-value=7.1e-18 Score=189.50 Aligned_cols=122 Identities=27% Similarity=0.511 Sum_probs=112.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLR--NCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~--~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
+.+||||||++.+|+.|+.++. .+|++|+ +|.||.+||+++.+ ..|||||+|+ ||+|||+++++.|++ ..|+
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLdLI~~ike--~~p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLDLIKAIKE--QSPD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHH--hCCC
Confidence 3689999999999999999995 5589877 99999999999998 7899999999 999999999999976 4589
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
+.+||||++.+.+.+.+|+..|+.|||.||++.++|..+|.++.......
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765443
No 11
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.75 E-value=5e-17 Score=196.95 Aligned_cols=197 Identities=19% Similarity=0.105 Sum_probs=154.8
Q ss_pred CCChhhhH--HHHHHHhhh---hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccc
Q 004001 3 VDGKADKR--LQELNHCLQ---AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMV 77 (780)
Q Consensus 3 ~~g~g~~r--~~~L~~~l~---~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~ 77 (780)
|+|+|..- ..+|+..+. ..+.+-+++||+++++.|||.|.+.|.+|.|++|.+.+|+....+..+.....
T Consensus 614 D~G~GI~~e~~~~iFe~F~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~----- 688 (828)
T PRK13837 614 DTGAGIDEAVLPHIFEPFFTTRAGGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFG----- 688 (828)
T ss_pred ECCCCCCHHHHHHhhCCcccCCCCCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCC-----
Confidence 67887652 223333321 13445579999999999999999999999999998888865432211111000
Q ss_pred hhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 78 CWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 78 ~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
........+.+||||||++..+..+...|...||+|+.+.++.++++.+......||+||+ .||+++|+++++.|+..
T Consensus 689 -~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~~ 766 (828)
T PRK13837 689 -PGPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHAA 766 (828)
T ss_pred -CcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHhh
Confidence 0111122456899999999999999999999999999999999999999753335899999 58999999999999754
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+.+|||++++........+++..| ++||.||++..+|..+|.+++++.
T Consensus 767 --~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 767 --APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred --CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 4789999999999988999999999 999999999999999999988754
No 12
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.74 E-value=5e-17 Score=146.64 Aligned_cols=110 Identities=32% Similarity=0.573 Sum_probs=104.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
||||||++..+..+..+|+..|| +|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.||... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 99999999999999987 7799999999 99999999999998764 8899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHH
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~ 203 (780)
+|...+.....+++++|+++||.||++.++|.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999999874
No 13
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=3.3e-17 Score=165.92 Aligned_cols=122 Identities=25% Similarity=0.437 Sum_probs=111.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++|||||||+.+.++-+.+++.. ||.++ +|.++++|..++.. ..|||||+|+ ||+.+|++|+..||+. ...+-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd~~Gi~lL~~ir~~--~~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPDGNGIELLPELRSQ--HYPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCCCccHHHHHHHHhc--CCCCC
Confidence 47999999999999999999987 89877 89999999999987 6789999999 9999999999999765 46678
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
||++|+..+.+.+.++++.|+.|||.|||..+.|..+|.+..++.....
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~ 125 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE 125 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887765443
No 14
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.73 E-value=3.3e-17 Score=163.17 Aligned_cols=121 Identities=26% Similarity=0.424 Sum_probs=111.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.-|.|||||..+|+.+..+|+..||+|.++.++.+.|..... ..|-+||+|+ ||+++|++|..+|.+. ...+|||
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~--~~~~PVI 80 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAER--GIRLPVI 80 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhc--CCCCCEE
Confidence 469999999999999999999999999999999999998644 6789999999 9999999999999765 4779999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
+||++.+..+..++++.||.|||.|||+...|+.+|++.+++....
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~ 126 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASR 126 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875443
No 15
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.71 E-value=2.6e-18 Score=133.76 Aligned_cols=45 Identities=47% Similarity=0.976 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhcccCCCCccchhhhhhhhhhCCCccceeeeecc
Q 004001 725 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 769 (780)
Q Consensus 725 r~~~~~~~~~k~~~r~~~k~i~y~~rk~~a~~r~r~~g~f~~~~~ 769 (780)
|+++|+||+|||+.|+|+|+|+|+|||.+|+.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 789999999999999999999999999999999999999999753
No 16
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-16 Score=172.56 Aligned_cols=122 Identities=34% Similarity=0.516 Sum_probs=113.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh-hcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS-HKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs-~~~~~~i 163 (780)
..++||+|||.+.++..+..+|+..||.|..|.+|++|++++.. ..+|+||+|+ ||+|+|+++|.+|+. .+.+..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--cCCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 56789999999999999999999999999999999999999987 5699999999 999999999999988 7778889
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.+...+++..||++||.||+++.+|..++...++.+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997665443
No 17
>PRK13557 histidine kinase; Provisional
Probab=99.69 E-value=9.2e-16 Score=173.73 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=153.1
Q ss_pred CCCChhhhHHHHHHHhhh--------hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCC
Q 004001 2 NVDGKADKRLQELNHCLQ--------AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (780)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~--------~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~ 73 (780)
.++|.|.. ...+.+.+. ..+...+++||+.+++.+||.|.+.+.+|.|++|.+.+|......... +.
T Consensus 330 ~D~G~Gi~-~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~----~~ 404 (540)
T PRK13557 330 TDTGSGMP-PEILARVMDPFFTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE----QE 404 (540)
T ss_pred EcCCCCCC-HHHHHhccCCCcccCCCCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC----CC
Confidence 46788765 223333331 124456799999999999999999999999999988887643221111 11
Q ss_pred CccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHH
Q 004001 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALL 151 (780)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl 151 (780)
... .........+||||+|++..+..+..+|+..||.+..+.++.+++..+.. ...||+||+|. |++ ++|++++
T Consensus 405 ~~~---~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~~~~~~ 480 (540)
T PRK13557 405 PKA---RAIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGGMNGVMLA 480 (540)
T ss_pred CCC---cccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCCHHHHH
Confidence 100 01122345689999999999999999999999999999999999999864 23699999999 997 9999999
Q ss_pred HHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 152 ~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+.|+.. .+.+|||+++..........++..|+.+||.||+..++|...|..++.
T Consensus 481 ~~l~~~--~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 481 REARRR--QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred HHHHHh--CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 999764 467899999999888888889999999999999999999999988765
No 18
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=140.27 Aligned_cols=119 Identities=33% Similarity=0.587 Sum_probs=105.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCC-CceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGL-QAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~-eALe~L~~~~~-~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
...+||||||++..+..+..+|...|+.|..+.++. +|++.++. . .||+||+|+ ||+++|++++++||.. .+.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~ 79 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE--LPQPDLILLDINMPGMDGIELLRRLRAR--GPN 79 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCC
Confidence 457899999999999999999999999999999995 99999987 5 499999999 9999999999999865 467
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHH-HHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~ee-L~~~L~~llrr 208 (780)
+|||++|++........++..|+++||.||+...+ |..++.+++..
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 88899999998877778899999999999977777 77777766554
No 19
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.66 E-value=1.5e-15 Score=156.19 Aligned_cols=118 Identities=27% Similarity=0.410 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G-yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++.++..|+.+|...+ ++|+ .+.++.++++.+.. ..||+||+|+ ||+++|++++++|++ ..++++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~--~~p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRA--RGPDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHH--HCCCCc
Confidence 479999999999999999998875 8877 78889999999876 7899999999 999999999999984 468899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|.+.+...+.+++++||++||.|..++++|..+|+.++...
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999987543
No 20
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.66 E-value=4.6e-16 Score=187.17 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=136.8
Q ss_pred CCCCcHHHHHHHHhCCcEEec-cccCC----cceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHH
Q 004001 24 RDENAVVGEQQHLVGDDRLND-SSIAE----DVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDS 98 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~-S~~G~----GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~ 98 (780)
.-..+.|...+.++.|.+.+. +..+. -+.+.......+..........+..... .......++.+||||||+..
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~l~g~~iLlvddn~v 677 (786)
T KOG0519|consen 599 GLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAE-PRDSKLLTGPKILLVDDNPV 677 (786)
T ss_pred ccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccC-ccccccccCCceEEEecccc
Confidence 344789999999999997653 22222 1222222222221111111111110000 00223456889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHH
Q 004001 99 TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~ 177 (780)
++.+...+|+++|.+|.++.+|.||++.+.. ...||+||||+ ||.|||+++.++||+... ..+|||+||++......
T Consensus 678 n~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pIvAlTa~~~~~~~ 755 (786)
T KOG0519|consen 678 NRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPIVALTADADPSTE 755 (786)
T ss_pred hHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-CCCCEEEEecCCcHHHH
Confidence 9999999999999999999999999999983 46899999999 999999999999997664 78999999999999999
Q ss_pred HHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 178 FKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 178 ~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+|++.|+|+||.|||+.+.|...|++++.
T Consensus 756 ~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 756 EECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred HHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999999999999999999999999888763
No 21
>PLN03029 type-a response regulator protein; Provisional
Probab=99.64 E-value=4e-15 Score=153.87 Aligned_cols=124 Identities=31% Similarity=0.558 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC------------------CCceEEEEcc-CCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLT------------------NHIDLVLTEV-MPCLS 146 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~------------------~~pDLVLlDi-MP~md 146 (780)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ..+||||+|+ ||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 4579999999999999999999999999999999999999986411 1367999999 99999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|+++++.|++......+|||++|+........+++++|+++||.||+...+|..++.++++..
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 999999998765456899999999999999999999999999999999999988888776654
No 22
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.64 E-value=2.3e-15 Score=168.41 Aligned_cols=123 Identities=31% Similarity=0.531 Sum_probs=117.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+||||||+...+..|+.+|...||+|..+.++.+|+..+.+ ..||+||+|+ ||++||+++++++|.......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE--LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc--CCCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 35789999999999999999999999999999999999999987 6899999999 99999999999999988888999
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++++..+.....++++.|++|||.||+...+|..++.+.+++.+
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999988765
No 23
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.62 E-value=1e-14 Score=149.96 Aligned_cols=121 Identities=25% Similarity=0.377 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNC-GYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~-Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.++||||||++.++..+..+|+.. ++. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~gle~~~~l~~~--~~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGRGINLLHELVQA--HYPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCC
Confidence 478999999999999999999864 785 5689999999999986 6799999999 9999999999999763 3567
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
+||++|+..+.....+++++||++||.||++.++|..+|++++.+...
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776543
No 24
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.62 E-value=1.1e-14 Score=146.75 Aligned_cols=118 Identities=26% Similarity=0.441 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
|+||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|++. .+.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~l~~~lr~~--~~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999999876 6799999999 9999999999999754 3679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++++..+......+++.||++||.||++..+|...|..++++.
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988763
No 25
>PRK11173 two-component response regulator; Provisional
Probab=99.61 E-value=1.4e-14 Score=148.13 Aligned_cols=118 Identities=27% Similarity=0.475 Sum_probs=109.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+...|+..||.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|++. +.+||
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pi 77 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCCCE
Confidence 3589999999999999999999999999999999999999976 6799999999 9999999999999753 46899
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++++..+......+++.||++||.||++..+|...|..++++.
T Consensus 78 i~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999888999999999999999999999999999998874
No 26
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.61 E-value=1.7e-14 Score=146.00 Aligned_cols=119 Identities=26% Similarity=0.436 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+...|+..||++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 579999999999999999999999999999999999998876 6799999999 9999999999999865445679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++++..+.....+++++||++||.||++..+|..+|..++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998876
No 27
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.61 E-value=1.7e-14 Score=145.87 Aligned_cols=117 Identities=28% Similarity=0.513 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
|+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++. .+.+|||
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~--~~~~pii 76 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSA--NKGMPIL 76 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999998876 6799999999 9999999999999754 3679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++++..+.+....++++||++||.||++..+|..+|..++++
T Consensus 77 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 77 LLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998875
No 28
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.61 E-value=1.8e-14 Score=145.19 Aligned_cols=117 Identities=25% Similarity=0.376 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|++. +.+|||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 479999999999999999999999999999999999998865 6799999999 9999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++++..+.+....++++|+++||.||++..+|...|+.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988764
No 29
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.60 E-value=2.2e-14 Score=143.27 Aligned_cols=120 Identities=28% Similarity=0.499 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+...|+..|++|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 589999999999999999999999999999999999999876 6799999999 9999999999999865445679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++++..+.....+++++|+++||.||++.++|..+|..++++.
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999988763
No 30
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.60 E-value=2.9e-14 Score=142.32 Aligned_cols=119 Identities=29% Similarity=0.453 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+..+|+..||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~--~~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDEDGLHLLRRWRQK--KYTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEE
Confidence 479999999999999999999999999999999999999876 6799999999 9999999999999754 3678999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
++++..+......++.+|+++||.||++.++|..+|..++++..
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ 120 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999887653
No 31
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.59 E-value=3.2e-14 Score=143.00 Aligned_cols=118 Identities=25% Similarity=0.434 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+...|...||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~~ii 77 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSR---STVGII 77 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCEE
Confidence 589999999999999999999999999999999999999876 6799999999 9999999999999753 478999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
++++..+.....+++++||++||.||++..+|...|..++++..
T Consensus 78 ~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 78 LVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred EEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988743
No 32
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.58 E-value=4e-14 Score=141.25 Aligned_cols=118 Identities=25% Similarity=0.382 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+..+|+..||++..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~--~~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREK--GQREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCcEE
Confidence 479999999999999999999999999999999999998876 6799999999 9999999999999753 4779999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|...+......++.+||++||.||++.++|..+|..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 33
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.58 E-value=4.3e-14 Score=144.20 Aligned_cols=119 Identities=26% Similarity=0.409 Sum_probs=110.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+...|...||++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~--~~~~pi 80 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQ--NNPTPI 80 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 3589999999999999999999999999999999999999876 6799999999 9999999999999764 367999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++++..+......++.+|+++||.||++.++|...|..++++.
T Consensus 81 i~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 81 IMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999988763
No 34
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.57 E-value=5.2e-14 Score=141.02 Aligned_cols=119 Identities=27% Similarity=0.421 Sum_probs=109.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~i 78 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAF--HPALPV 78 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCE
Confidence 4689999999999999999999999999999999999998875 6799999999 9999999999999764 367999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|+++...+......++.+|+++||.||++..+|..+|..++++.
T Consensus 79 i~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 79 IFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999998888899999999999999999999999999887654
No 35
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.57 E-value=6.6e-14 Score=143.16 Aligned_cols=117 Identities=25% Similarity=0.340 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 379999999999999999999999999999999999999976 6799999999 9999999999999863 357999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++++..+......++++|+++||.||+...+|..++..++++.
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999988888889999999999999999999999999988874
No 36
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.56 E-value=7.4e-14 Score=144.66 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++.++..+..+|... ++.++ .+.++.++++.+......|||||+|+ ||+++|+++++.|++. .+.+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~--~~~~~ 79 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA--GCKSD 79 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--CCCCC
Confidence 58999999999999999999864 77655 78999999998863225699999999 9999999999999754 46899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|+..+.....+++..|+++||.||++.++|..+|.+++.+.
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876654
No 37
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.56 E-value=8.9e-14 Score=140.32 Aligned_cols=117 Identities=26% Similarity=0.352 Sum_probs=108.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhhcCCCCccE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~--mdGleLl~~IRs~~~~~~iPI 165 (780)
+||||||++..+..+...|+..||+|..+.++.+++..+.. ..||+||+|+ ||+ .+|+++++.|+.. .+.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~--~~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSL--SATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 69999999999999999999999999999999999999876 6799999999 997 5899999999754 367899
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+......++++||++||.||+...+|..+|+.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998765
No 38
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-14 Score=153.10 Aligned_cols=116 Identities=21% Similarity=0.439 Sum_probs=105.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++|+|||||..+...|..+|.+.|..+..|....+||+.|+. ..|||||+|+ ||+|+|+++++++|... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 479999999999999999999999888899999999999997 7899999999 99999999999998654 889999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|++.. .....+...++|||+||++++.|..+|.++.++.
T Consensus 77 fIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 77 FISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred EEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 9999864 5567778888999999999999999999988654
No 39
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.56 E-value=9e-14 Score=140.22 Aligned_cols=116 Identities=34% Similarity=0.487 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||.+..+.++.+++..+. ..||+||+|+ ||+++|+++++.|+... + +|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---~~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---cCCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcEE
Confidence 48999999999999999999999999999999999999875 3699999999 99999999999997643 3 8999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|+..+......++++|+++||.||++.++|..+|..++++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999998888899999999999999999999999999988754
No 40
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.55 E-value=1.1e-13 Score=142.21 Aligned_cols=116 Identities=22% Similarity=0.404 Sum_probs=105.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
+||||||++..+..|...|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii~ 77 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIII 77 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEE
Confidence 79999999999999999999999999999999999999876 6799999999 9999999999999753 4689999
Q ss_pred EecCC-CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 168 MSSLD-SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 168 LSa~~-~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+++.. +.....+++++||++||.||++..+|...|+.++++.
T Consensus 78 lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 78 ISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred EECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99854 5666789999999999999999999999999988764
No 41
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.55 E-value=1.2e-13 Score=138.39 Aligned_cols=116 Identities=27% Similarity=0.471 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
|+||||||++..+..+...|+..|+.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 479999999999999999999999999999999999998876 6799999999 9999999999999753 468999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++++..+.+...+++++||++||.||+...+|..+|..++++
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988765
No 42
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.55 E-value=1.6e-13 Score=139.11 Aligned_cols=119 Identities=32% Similarity=0.541 Sum_probs=109.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~---~~~~ 79 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVP 79 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCc
Confidence 45689999999999999999999999999999999999998876 6799999999 9999999999999753 5799
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++++..+......++++||++||.||++.++|..+|..++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 80 IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999988899999999999999999999999999988754
No 43
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.54 E-value=1.3e-13 Score=140.18 Aligned_cols=118 Identities=14% Similarity=0.238 Sum_probs=106.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCC---CCHHHHHHHHHhhcC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGY-E-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPC---LSGVALLSKIMSHKT 159 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy-e-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~---mdGleLl~~IRs~~~ 159 (780)
..++||||||++..+..+..+|+..++ . +..+.++.++++.+.. ..|||||+|+ ||+ ++|++++++|+..
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~-- 77 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRH-- 77 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHH--
Confidence 457899999999999999999987765 4 5589999999999876 6799999999 999 5999999999754
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+.+|||++|...+......++++|+++||.||+.+++|..+|+.++.
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 577999999999999999999999999999999999999999998765
No 44
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.53 E-value=1.9e-13 Score=143.10 Aligned_cols=120 Identities=20% Similarity=0.384 Sum_probs=106.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.++||||||++..+..+..+|... ++.++ .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 468999999999999999999864 56655 79999999999986 6799999999 9999999999999875544458
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||++|+.........+++.|+++||.||++.++|...|.+++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999887653
No 45
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.52 E-value=2.7e-13 Score=134.31 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=107.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
++||||||++..+..+...|+..||.+. .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeE
Confidence 4799999999999999999999999987 79999999999876 6799999999 9999999999999753 466899
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|++++..+......++..|+++||.||++.++|..+|+.+++.
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9999999989999999999999999999999999999998754
No 46
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.51 E-value=3.7e-13 Score=133.92 Aligned_cols=116 Identities=30% Similarity=0.489 Sum_probs=107.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
||||||++..+..+...|...|+.+..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~--~~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRS--GKQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcc--CCCCcEEEE
Confidence 6899999999999999999999999999999999999876 6799999999 9999999999999754 467999999
Q ss_pred ecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+...+......++.+|+++||.||+...+|...|..++++.
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887754
No 47
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.50 E-value=1.2e-13 Score=153.36 Aligned_cols=120 Identities=25% Similarity=0.393 Sum_probs=108.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+||||||++..+..|..+|.. .+.+..+.++.+|+..+.. ..|||||+|+ ||+++|+++++.|++....+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 456899999999999999999964 5778889999999999876 7899999999 99999999999998765568899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||++|++.+.+...+++..||+|||.||+++++|...|...+++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876553
No 48
>PRK09483 response regulator; Provisional
Probab=99.50 E-value=4.6e-13 Score=133.98 Aligned_cols=118 Identities=27% Similarity=0.403 Sum_probs=107.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+++||||||++..+..+..+|+.. ++.++ .+.++.+++..+.. ..|||||+|+ ||+++|+++++.|++. .+.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~ 76 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGGLEATRKILRY--TPDV 76 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHH--CCCC
Confidence 368999999999999999999875 88876 78999999999986 6799999999 9999999999999753 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||+++...+......++..|+++||.||++.++|..+|..+++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999988754
No 49
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.49 E-value=2.2e-13 Score=131.46 Aligned_cols=112 Identities=18% Similarity=0.336 Sum_probs=105.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
..||||||..+...|...|+..||.|.++.+.+++|..++. ..|...++|+ |.+.+|+++++.||+. .++..||+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--~~PayAvvDlkL~~gsGL~~i~~lr~~--~~d~rivv 86 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--APPAYAVVDLKLGDGSGLAVIEALRER--RADMRIVV 86 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--CCCceEEEEeeecCCCchHHHHHHHhc--CCcceEEE
Confidence 58999999999999999999999999999999999999987 6788899999 9999999999999765 57899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
+|++.+....+++++.||++||.||-+.+++..++.+
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 9999999999999999999999999999998877654
No 50
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.48 E-value=9.4e-13 Score=130.30 Aligned_cols=119 Identities=17% Similarity=0.302 Sum_probs=107.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
+..+||||||++..+..+..+|... ++.+. .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.
T Consensus 2 ~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~--~~~ 77 (210)
T PRK09935 2 KPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQI--QST 77 (210)
T ss_pred CcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHh--CCC
Confidence 3468999999999999999999877 58876 78899999998876 6799999999 9999999999999753 467
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|||++++.........++..|+++||.||+..++|..+|+.++++
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 78 VKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred CcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 9999999999988999999999999999999999999999988764
No 51
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.48 E-value=6.5e-13 Score=150.99 Aligned_cols=119 Identities=29% Similarity=0.459 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dgl~~l~~ir~~--~~~~pv 78 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLPV 78 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCHHHHHHHHHhh--CCCCeE
Confidence 3589999999999999999999999999999999999999976 6799999999 9999999999999754 467999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+.+....++++|+++||.||+..++|...|.+++...
T Consensus 79 Ivlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654
No 52
>PRK15115 response regulator GlrR; Provisional
Probab=99.48 E-value=4.9e-13 Score=150.80 Aligned_cols=119 Identities=24% Similarity=0.493 Sum_probs=110.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~--~~~~p 79 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKV--QPGMP 79 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCCCc
Confidence 44689999999999999999999999999999999999999976 6799999999 9999999999999754 57899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||++|+..+.....+++.+|+++||.||+...+|...|..++++
T Consensus 80 vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 80 VIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988764
No 53
>PRK14084 two-component response regulator; Provisional
Probab=99.47 E-value=8.7e-13 Score=136.24 Aligned_cols=116 Identities=23% Similarity=0.422 Sum_probs=101.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG-Y-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G-y-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++..+..+..+|...+ + .+..+.++.+++..+.. ..|||||+|+ ||+++|+++++.|++. .+.++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~G~~~~~~i~~~--~~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDESGIELAAKIQKM--KEPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCE
Confidence 479999999999999999999875 4 46689999999999976 6799999999 9999999999999764 35678
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|++.. ...++++.|+++||.||+..++|..+|.+++++.
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 888888753 5678999999999999999999999999987654
No 54
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.47 E-value=2.7e-12 Score=113.88 Aligned_cols=122 Identities=26% Similarity=0.508 Sum_probs=109.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+.++|||+++++.....+...|...|++ +..+.++.+++..+.. ..+|+||+|. +++++|+++++.|+.....+.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 4578999999999999999999999985 6788999999998875 6799999999 9999999999999865445678
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|+|+++..........++..|+++|+.||++..+|...+++++++.
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 9999998888888889999999999999999999999999988764
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.46 E-value=6e-13 Score=149.58 Aligned_cols=120 Identities=31% Similarity=0.548 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..+..+|+..||.|..+.++.+++..+.. ..|||||+|+ ||+++|+++++.|+.. .+.+|
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~--~~~~~ 79 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKAL--NPAIP 79 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCe
Confidence 35799999999999999999999999999999999999999876 6799999999 9999999999999764 47899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|++.+.+...++++.|+.+||.||++.++|...|.+++++.
T Consensus 80 vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 80 VLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887653
No 56
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.46 E-value=2.1e-12 Score=128.77 Aligned_cols=118 Identities=26% Similarity=0.477 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+..+|...|+.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~--~~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKR--GQTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999988876 6799999999 9999999999999754 3678999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+++...+.....+++..|+++||.||+...+|...+..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999888899999999999999999999999999888764
No 57
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.45 E-value=1.4e-12 Score=128.49 Aligned_cols=114 Identities=31% Similarity=0.379 Sum_probs=102.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC-GYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++..+..+..+|... ++. +..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+ +.+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~-----~~~~ 74 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLP-----KGMA 74 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHc-----cCCC
Confidence 58999999999999999999754 676 4588999999999976 6799999999 99999999999984 3579
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||+++.....+....++..|+++||.||++.++|..+|+.++++
T Consensus 75 vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998864
No 58
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.45 E-value=3e-12 Score=129.77 Aligned_cols=118 Identities=22% Similarity=0.396 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|...|+.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+. .+.+|||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~---~~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRR---FSDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCEE
Confidence 389999999999999999999999999999999999999876 6799999999 999999999999974 3568999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
+++..........++.+|+++||.||+...+|...|..++++..
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~ 129 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhcc
Confidence 99999888888899999999999999999999999999887653
No 59
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.43 E-value=2.3e-12 Score=132.01 Aligned_cols=115 Identities=24% Similarity=0.455 Sum_probs=98.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G-yeV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++..+..|..+|+..+ +.+ ..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|+.. ...+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~~ 76 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISGLELVGMLDPE---HMPY 76 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHhccc---CCCE
Confidence 689999999999999999999887 343 478999999999876 6799999999 9999999999998532 2346
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|++. +...++++.|+.+||.||+..++|..+|.++.++.
T Consensus 77 ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (238)
T PRK11697 77 IVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER 119 (238)
T ss_pred EEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 88888875 46678999999999999999999999999987643
No 60
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.43 E-value=1.6e-12 Score=146.64 Aligned_cols=113 Identities=24% Similarity=0.360 Sum_probs=104.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC-----CCHHHHHHHHHhhcCCCCc
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-----mdGleLl~~IRs~~~~~~i 163 (780)
||||||++.++..+...| .||+|..+.++.+|++.+.. ..|||||+|+ ||+ ++|+++++.|++. .+.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~--~~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAI--APDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh--CCCC
Confidence 699999999999999988 78999999999999999987 6799999999 995 8999999999754 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||++|+..+.+...++++.||++||.||++.++|..+|..+++.
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999887754
No 61
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.43 E-value=1.8e-12 Score=146.45 Aligned_cols=117 Identities=29% Similarity=0.542 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|...||+|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~g~~ll~~i~~~--~~~~pvI 80 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMDGIKALKEMRSH--ETRTPVI 80 (457)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999999976 6799999999 9999999999999753 4779999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+..+.+....+++.|+++||.||++.++|...|..++..
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999998877653
No 62
>PRK13435 response regulator; Provisional
Probab=99.42 E-value=5e-12 Score=119.99 Aligned_cols=121 Identities=22% Similarity=0.283 Sum_probs=103.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~ 161 (780)
+..++|||+|+++..+..+...|...||.+. .+.++.++++.+.. ..|||||+|+ ++ +.+|+++++.++.. +
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~~~~~~~~~l~~~---~ 77 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGPTGVEVARRLSAD---G 77 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCCcHHHHHHHHHhC---C
Confidence 4567999999999999999999999999987 78999999998875 5799999999 87 58999999999642 4
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
.+|||+++...+ ...++..|+++||.||++..+|...|++++.++....
T Consensus 78 ~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 126 (145)
T PRK13435 78 GVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVGDR 126 (145)
T ss_pred CCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcccc
Confidence 789999997643 2467889999999999999999999999987665443
No 63
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.42 E-value=4.1e-12 Score=141.03 Aligned_cols=120 Identities=28% Similarity=0.410 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|...||.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 479999999999999999999889999999999999999976 6799999999 9999999999999865444679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++++..+.....+++..|+++||.||++.++|..+|..+++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887643
No 64
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.41 E-value=2.6e-12 Score=145.61 Aligned_cols=115 Identities=30% Similarity=0.505 Sum_probs=107.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g~~ll~~l~~~--~~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDGLDLLPQIKKR--HPQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHHh--CCCCeEEEE
Confidence 6999999999999999999999999999999999999876 6799999999 9999999999999764 467999999
Q ss_pred ecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|+..+.....+++++|+++||.||+..++|...|.+++..
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 65
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.41 E-value=3.6e-12 Score=124.06 Aligned_cols=119 Identities=28% Similarity=0.452 Sum_probs=108.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+...|...+|.+..+.++.+++..+.. ..||+||+|+ |++++|+++++.|+.. .+.+||
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~--~~~~~i 78 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKAR--GSPLPV 78 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCCCE
Confidence 4589999999999999999999999999999999999998875 6799999999 9999999999999753 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|+++...+......++..|+.+|+.||+...+|...+..++.+.
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999999999998887653
No 66
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.40 E-value=3.4e-12 Score=139.54 Aligned_cols=115 Identities=26% Similarity=0.412 Sum_probs=97.6
Q ss_pred cEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALL-RNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL-~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++..+..+..+| +..+|+++ .+.++.+|++.+.. ..||+||+|+ ||+++|++++++|+.. ..+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~e~l~~l~~~---~~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGVEATRRIMAE---RPCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHHHHHHHHHHH---CCCc
Confidence 47999999999999999999 46688887 78999999999986 6799999999 9999999999999763 3489
Q ss_pred EEEEecCCC--HHHHHHHHHCCCCeEEeCCC---------CHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDS--MGLVFKCLSKGAVDFLVKPI---------RKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~--~e~~~~al~aGAddyL~KP~---------~~eeL~~~L~~llr 207 (780)
||++++... .....++++.|+++||.||+ ..++|...|+.+.+
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 999998754 45677899999999999999 45566666666553
No 67
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.38 E-value=7.9e-12 Score=137.49 Aligned_cols=104 Identities=33% Similarity=0.578 Sum_probs=91.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..+..+|... ++.++ .+.++.++++.+.. ..|||||+|+ ||+++|++++++|++.. +
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dgle~l~~i~~~~--~- 76 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDGLDALEKIMRLR--P- 76 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCChHHHHHHHHHhC--C-
Confidence 4579999999999999999999876 88887 89999999999876 6799999999 99999999999997653 3
Q ss_pred ccEEEEecCC--CHHHHHHHHHCCCCeEEeCCCC
Q 004001 163 LPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 163 iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~~ 194 (780)
+|||++++.. ......++++.|+++||.||+.
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 8999999764 3456778999999999999994
No 68
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.36 E-value=1.9e-11 Score=119.57 Aligned_cols=119 Identities=17% Similarity=0.378 Sum_probs=105.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
+.++||||||++..+..+..+|... ++.++ .+.++.+++..+.. ..||+||+|+ |++++|+++++.|+.. .+.
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~--~~~ 77 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQR--WPA 77 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHH--CCC
Confidence 4578999999999999999999876 46654 78999999988876 6799999999 9999999999999764 367
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|||+++...+......++..|+++||.||+...+|...|..+++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 78 MNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8999999999999999999999999999999999999999887643
No 69
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.34 E-value=2.4e-11 Score=119.93 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=104.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.++|||||+++..+..+...|.. .++.+. .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~--~~~~ 81 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRD--GVTA 81 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHh--CCCC
Confidence 46899999999999999999975 578776 68999999998876 6799999999 9999999999999754 4668
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|+|+++...+......++..|+++||.||++..+|..+|+.++++
T Consensus 82 ~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 82 QIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred eEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 999999988888888999999999999999999999999987653
No 70
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.32 E-value=4.3e-11 Score=118.50 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=105.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
...+||||||++..+..+..+|... ++.++ .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. .+.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~~~~~~~~l~~~--~~~ 80 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREK--SLS 80 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHHh--CCC
Confidence 3468999999999999999999765 56654 68999999999876 6799999999 9999999999999754 467
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|||+++...+......++..|+++||.||++..+|...|..+++.
T Consensus 81 ~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 81 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred CcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8999999999998999999999999999999999999999998753
No 71
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.31 E-value=1.6e-11 Score=145.22 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=103.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++.++..+..+|...||.|..+.++.+++..+.. ..|||||+|+ ||+++|++++++|+. ..+.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~--~~~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQ--TTAVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHh--cCCCCCE
Confidence 4689999999999999999999999999999999999999876 6799999999 999999999999975 3578999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHH--HHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKN--ELKNLWQHVWRR 208 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~e--eL~~~L~~llrr 208 (780)
|++|+..+.....+++..|+.+||.||.... .|..++..++..
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999997643 555666655543
No 72
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.29 E-value=3.1e-11 Score=124.97 Aligned_cols=114 Identities=9% Similarity=0.127 Sum_probs=94.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHH-HHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL-SKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl-~~IRs~~~~~~ 162 (780)
...+||||||++..+..|+.+|+ .++.| ..+.++.+++..+. .|||||+|+ ||+++|++++ +.|+.. .+.
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~--~p~ 81 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRK--NNN 81 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHh--CCC
Confidence 45579999999999999999998 45654 47789999988753 489999999 9999999997 567643 578
Q ss_pred ccEEEEecCCCHHHHHHHHH--CCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLS--KGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~--aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++||++|...+. ...++. +||.+||.|+.+.++|..+|+.+++.
T Consensus 82 ~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 82 IKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 999999998763 344555 59999999999999999999998753
No 73
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.28 E-value=3.8e-11 Score=131.34 Aligned_cols=103 Identities=36% Similarity=0.565 Sum_probs=91.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G-yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.+|||||||....|..|+++|...+ ++|+ ++.|+.+|++.+.+ ..||+|++|+ ||.|||++++++|... ..+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 3689999999999999999999998 5554 99999999999988 7899999999 9999999999999653 568
Q ss_pred cEEEEecCCC--HHHHHHHHHCCCCeEEeCCCC
Q 004001 164 PVIMMSSLDS--MGLVFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 164 PIIvLSa~~~--~e~~~~al~aGAddyL~KP~~ 194 (780)
||||+++... .+...+++++||.||+.||..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9999988554 456788999999999999984
No 74
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.26 E-value=5e-11 Score=122.64 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=89.5
Q ss_pred HHHHHHHHHh---CCCEEEEECCHHHHHHHHHhcCCCceEEE---Ecc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 100 RHVVAALLRN---CGYEVTEATNGLQAWKILEDLTNHIDLVL---TEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 100 r~~L~~lL~~---~GyeV~~A~dg~eALe~L~~~~~~pDLVL---lDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
|..|..+|.. .||.|..+.+++++++.+.. ..||+|| +|+ ||+++|++++++|++. .+.+|||++|+..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~--~p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHH--CCCCCEEEEeCCC
Confidence 6678888865 36667799999999999875 5789998 677 8999999999999754 5889999999988
Q ss_pred CHHHHHHHH-HCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 173 SMGLVFKCL-SKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 173 ~~e~~~~al-~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+......++ ++||.+||.||++.++|..+|+.+++.
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 776666655 799999999999999999999998864
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.23 E-value=6.9e-11 Score=118.90 Aligned_cols=121 Identities=22% Similarity=0.379 Sum_probs=103.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
...++||++||++..+..+...|...||.++ ++.++.++.+.+.. ..||+||+|+ ||..|-++-+.+. .....
T Consensus 3 ~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~rd~~e~~~~~---~~~~~ 77 (194)
T COG3707 3 AMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPRRDIIEALLLA---SENVA 77 (194)
T ss_pred ccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCCccHHHHHHHh---hcCCC
Confidence 3567999999999999999999999999776 88899999999887 7899999999 9999944433333 22356
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
.|||++|++.+...+..++++|+.+||+||+++..|+..|.-...++.
T Consensus 78 ~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~ 125 (194)
T COG3707 78 RPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFE 125 (194)
T ss_pred CCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHH
Confidence 789999999999999999999999999999999999988876665543
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.23 E-value=1.8e-10 Score=119.78 Aligned_cols=115 Identities=18% Similarity=0.285 Sum_probs=99.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~i 163 (780)
..+||||||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+||+|+ ||+ ++|+++++.++... .+
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~~ 211 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTF---DV 211 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhC---CC
Confidence 45899999999999999999999999988 78999999999876 6799999999 995 89999999997542 78
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||++|+..+... .+...++.+||.||++.++|...|.+++..
T Consensus 212 pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 212 PVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred CEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999999776543 334567889999999999999999987765
No 77
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.20 E-value=1.8e-10 Score=118.20 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=95.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEc--c-CCCCCHHHHHHHHHhhcCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTE--V-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlD--i-MP~mdGleLl~~IRs~~~~~ 161 (780)
+.||||||++.++..++.+|+..++ .+ ..+.++.+++..+.. ..|||||+| . |+..+|++++++|++. .+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~--~p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQ--HP 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHH--CC
Confidence 3599999999999999999987653 34 488999999998875 679999999 4 6777999999999754 57
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCe-EEeCCCCHHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVD-FLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAdd-yL~KP~~~eeL~~~L~~llrr 208 (780)
.++||++|+..+..... ++..|+.. |+.|+.++++|..+|+.++..
T Consensus 77 ~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 77 NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 89999999988776543 55555554 889999999999999998654
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.20 E-value=3.3e-10 Score=95.51 Aligned_cols=111 Identities=32% Similarity=0.563 Sum_probs=99.5
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEe
Q 004001 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 91 LIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLS 169 (780)
||+++++..+..+...|...|+.+..+.+..+++..+.. ..+|+||+|. ++..+++++++.|+.. .+.+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 578999999999999999999999999999999998876 6799999999 9999999999999764 4678999999
Q ss_pred cCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 170 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 170 a~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
..........++..|+.+|+.||+...+|...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 887778888999999999999999999998888653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.04 E-value=1.4e-09 Score=117.87 Aligned_cols=89 Identities=26% Similarity=0.477 Sum_probs=80.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCC-
Q 004001 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI- 193 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~- 193 (780)
.+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||++|+..+.+.+.+++++|++|||.||+
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~--~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNR--GDQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 47889999999976 6799999999 9999999999999764 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004001 194 RKNELKNLWQHVWRR 208 (780)
Q Consensus 194 ~~eeL~~~L~~llrr 208 (780)
+.++|..+|.+++++
T Consensus 78 ~~~~L~~~i~~~l~~ 92 (303)
T PRK10693 78 DLNRLREMVFACLYP 92 (303)
T ss_pred cHHHHHHHHHHHhhh
Confidence 589999998887654
No 80
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.96 E-value=5.6e-09 Score=128.06 Aligned_cols=120 Identities=17% Similarity=0.118 Sum_probs=87.5
Q ss_pred CCChhhh--HHHHHHHhhhh--------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCC
Q 004001 3 VDGKADK--RLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQP 72 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~--------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~ 72 (780)
|+|+|.. ...+|+..+.. .+.+-+++||++|+++|||.|.++|.+|.|++|.+.+|+...... ....
T Consensus 606 DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~---~~~~ 682 (894)
T PRK10618 606 DTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPE---VEEE 682 (894)
T ss_pred ECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCccc---cccc
Confidence 6788765 22233333321 234456899999999999999999999999999998887432110 0000
Q ss_pred CCccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 73 QGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 73 ~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
......+++||||||++.++..+..+|+.+|++|..+.++. . ...|||||+|+
T Consensus 683 --------~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~--~~~~Dlvl~D~ 735 (894)
T PRK10618 683 --------EEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------I--SQEYDIFLTDN 735 (894)
T ss_pred --------ccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------c--CCCCCEEEECC
Confidence 01124668999999999999999999999999999887632 2 25799999998
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.95 E-value=4.9e-09 Score=125.50 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=95.3
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH----HHHHHH
Q 004001 88 LKVLLVENDDS--------TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV----ALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~--------~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGl----eLl~~I 154 (780)
|+|||||||.. +++.|...|+..||+|..+.++.+|+..+.. ...||+||+|+ ||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~-~~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-cCCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 37999999995 6999999999999999999999999999964 14799999999 9999997 899999
Q ss_pred HhhcCCCCccEEEEecCCC--HHHHHHHHHCCCCeEEeCCCCHHHH-HHHHHHHHHHhccC
Q 004001 155 MSHKTRKNLPVIMMSSLDS--MGLVFKCLSKGAVDFLVKPIRKNEL-KNLWQHVWRRCHSS 212 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~~~--~e~~~~al~aGAddyL~KP~~~eeL-~~~L~~llrr~~~~ 212 (780)
|+. .+++|||++|+..+ ...-...++ -+++|+.+--+..++ ...|....+++...
T Consensus 80 R~~--~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 137 (755)
T PRK15029 80 HER--QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRYRQQ 137 (755)
T ss_pred Hhh--CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHHHHh
Confidence 753 46899999999986 333333333 367888886655444 45566666666433
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=9.5e-09 Score=108.42 Aligned_cols=116 Identities=27% Similarity=0.484 Sum_probs=99.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+++|+++||++..++.|..+|... .+++. .+.++.++++.++. ..+|++|+|+ ||+++|+++.+.|+.. .+..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~~~G~ela~~i~~~--~~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPDINGIELAARIRKG--DPRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCccchHHHHHHhccc--CCCC
Confidence 368999999999999999999843 33333 78999999999987 5899999999 9999999999999754 4667
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|+++|++. +....+++..|.|||.||+..+.|...+..+.+.
T Consensus 77 ~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 899999986 4566778899999999999999999999987665
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.65 E-value=3.1e-07 Score=112.12 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=133.6
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHHH
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRH 101 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~ 101 (780)
+.+-+++||++|+++|||.|.+.|.+|.|++|.+.+|+....... . ... ....+.+.+|||+||++..+.
T Consensus 481 g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~---~-~~~------~~~~~~g~~ili~d~~~~~~~ 550 (919)
T PRK11107 481 GTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI---I-DGL------PTDCLAGKRLLYVEPNSAAAQ 550 (919)
T ss_pred CcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc---c-ccC------CccccCCCeEEEEeCCHHHHH
Confidence 345569999999999999999999999999999988875432110 0 000 111245679999999999999
Q ss_pred HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHH
Q 004001 102 VVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
.+..+|..+||.|..+.+..+ +.. ..||++|+|+ ||++.+...+............++|+++..........+
T Consensus 551 ~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 624 (919)
T PRK11107 551 ATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQL 624 (919)
T ss_pred HHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHH
Confidence 999999999999999988887 333 5799999999 998877665544433333344568888888888888899
Q ss_pred HHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 181 LSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 181 l~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
.+.|+++||.||+...+|...+....
T Consensus 625 ~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 625 KQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred hhCCCceEECCCCCHHHHHHHHHHhh
Confidence 99999999999999999998887654
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.92 E-value=9.4e-06 Score=91.97 Aligned_cols=91 Identities=33% Similarity=0.459 Sum_probs=81.2
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 112 YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 112 yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++|.++..+.+++..+.. ..+|++|+|+ ||+++|+++++++++... +++++|...+.....+.+++|+++||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchhHHhhhhhhhcc
Confidence 567779999999999987 7899999999 999999999999976543 289999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 004001 191 KPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 191 KP~~~eeL~~~L~~llrr 208 (780)
||+....+......+.+.
T Consensus 87 ~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCChHHHHHhhhhhccc
Confidence 999999999888887654
No 85
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.56 E-value=0.00045 Score=64.45 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=76.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
||||||||..-+..|..+|+=.|+++..+...+. ...... ...+.+++-. .+ ...++++.|.+ ..+.+|||
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~--~~~~~Pvl 73 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS--KLAELLKELLK--WAPHIPVL 73 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch--hHHHHHHHHHh--hCCCCCEE
Confidence 6999999999999999999999999888876443 233332 3445554443 33 45667787744 45889999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
++......... ..+.+-|..|++..+|..+|++.
T Consensus 74 llg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 74 LLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred EECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 99887765111 12667799999999999988764
No 86
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.43 E-value=0.00093 Score=48.60 Aligned_cols=54 Identities=41% Similarity=0.753 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP 143 (780)
++|+++++++..+..+...|...|+++..+.+..+++..+.. ..+|+|++|+ ++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 369999999999999999999999999999999999998875 5799999997 53
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.91 E-value=0.035 Score=54.01 Aligned_cols=118 Identities=12% Similarity=0.042 Sum_probs=89.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHH
Q 004001 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~m--dGleLl~~IR 155 (780)
+..+||+. |.+..-..++..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. |... .-.+++++|+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 45678888 88888889999999999999985 3457888888877 7899999988 6532 2356778886
Q ss_pred hhcCCCCccEEEEecCC------CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~------~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+.. .++++|+ +.+.. ..+...++.+.|++.++......+++...|++.+.
T Consensus 80 ~~~-~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 80 EAG-LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred hcC-CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 542 3456544 44432 34566788999999999999999999998888764
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.81 E-value=0.029 Score=53.15 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=77.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHHhhcCCCCccEEE
Q 004001 94 ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~m--dGleLl~~IRs~~~~~~iPIIv 167 (780)
|.+..=..++..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-. +... .--++++.|++.. ...+ .|+
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~-~~~i-~i~ 85 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELG-AGDI-LVV 85 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcC-CCCC-EEE
Confidence 666777788889999999999843 457788888887 7899999987 6432 2245677776542 2234 455
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHH
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~ 203 (780)
+.+....+...++.++|++.|+..--..++....|+
T Consensus 86 ~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 86 GGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 665555667788899999999999888888776654
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.76 E-value=0.052 Score=52.51 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=79.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCccEEE
Q 004001 94 ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~-md-GleLl~~IRs~~~~~~iPIIv 167 (780)
|-+..-..++..+|+..||+|+. ..+.+++++.+.+ ..+|+|.+-. +.. +. --++++.|++.. ...++ |+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g-~~~i~-vi 88 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLG-RPDIL-VV 88 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcC-CCCCE-EE
Confidence 55666678899999999999983 4578889998887 6899998876 532 22 235667776543 22444 44
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+-+....+....+.++|+++|+..--+..++...|.+.+.
T Consensus 89 vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 89 VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 5554455667789999999999988888888888877553
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.04 E-value=0.053 Score=50.99 Aligned_cols=106 Identities=20% Similarity=0.142 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-C-CCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHH
Q 004001 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M-PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-M-P~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~ 177 (780)
...|...|+..|++|+.+.+.++++..++. ...+..||+++ - ......++++.||.+ ...+||.+++.....+.+
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~-~~~i~avvi~~d~~~~~~~~~ll~~i~~~--~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIES-FTDIAAVVISWDGEEEDEAQELLDKIRER--NFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHC-TTTEEEEEEECHHHHHHHHHHHHHHHHHH--STT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHh-CCCeeEEEEEcccccchhHHHHHHHHHHh--CCCCCEEEEecCCCcccC
Confidence 356777788899999999999999999986 36788999987 1 112356899999765 478999999987655444
Q ss_pred HHHHHCCCCeEEeCCCC-HHHHHHHHHHHHHH
Q 004001 178 FKCLSKGAVDFLVKPIR-KNELKNLWQHVWRR 208 (780)
Q Consensus 178 ~~al~aGAddyL~KP~~-~eeL~~~L~~llrr 208 (780)
-..+-.-+++|+...-+ ++.+...|....++
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 44555667889887654 45556677776655
No 91
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.53 E-value=0.13 Score=47.95 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=65.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhhcCCC-CccEE
Q 004001 94 ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRK-NLPVI 166 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~--mdGleLl~~IRs~~~~~-~iPII 166 (780)
|.+..-..++..+|+..||+|+. ....++.++.+.+ ..||+|.+-. +.. ....++++.||+.. + +++|
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~i- 84 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIPV- 84 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcC--CCCCeE-
Confidence 56666778899999999999974 3356677888876 7899999887 543 23467788887653 4 5554
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~K 191 (780)
++.+.........+.+.|+|.|+..
T Consensus 85 ~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 85 LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred EEECCCCChhHHHHHHcCCeEEECC
Confidence 4555544444457889999877763
No 92
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=95.19 E-value=0.0084 Score=62.32 Aligned_cols=42 Identities=45% Similarity=0.756 Sum_probs=40.2
Q ss_pred CHHhHHHHHHHHHhhhcccCCCCccchhhhhhhhhhCCCccc
Q 004001 721 KFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRG 762 (780)
Q Consensus 721 ~~~~r~~~~~~~~~k~~~r~~~k~i~y~~rk~~a~~r~r~~g 762 (780)
....|++.+.||+++++.|.|+++|+|..||..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 457899999999999999999999999999999999999999
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.17 E-value=0.4 Score=46.75 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCC-HHHHHHHHHhhcCCCCccEEEE
Q 004001 95 NDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLS-GVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 95 DD~~~r~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~md-GleLl~~IRs~~~~~~iPIIvL 168 (780)
-+..-..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |- .+. --++.++|++... ..+ +|++
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~gl-~~~-~viv 88 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAGL-EGI-LLYV 88 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCCC-CCC-EEEe
Confidence 344455788999999999998 45678899998887 7899999887 53 222 3456777766542 333 4566
Q ss_pred ecCC---CHH---HHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 169 SSLD---SMG---LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 169 Sa~~---~~e---~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
-+.. ..+ ...++.++|++..+...-.++++...|++.|+
T Consensus 89 GG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 89 GGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 5531 111 24468899999999988899999999888764
No 94
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=94.75 E-value=0.016 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHhhhcccCCCCccchh
Q 004001 723 ADREAAVTKYRQKKTERCFRKKVRYQ 748 (780)
Q Consensus 723 ~~r~~~~~~~~~k~~~r~~~k~i~y~ 748 (780)
..|.+.|.||-||||+|.+. +..|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 45899999999999999998 77775
No 95
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.49 E-value=0.82 Score=45.02 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=83.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEccCCC---CCHHHHHHHHH
Q 004001 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEVMPC---LSGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDiMP~---mdGleLl~~IR 155 (780)
+..||||. |-+..-..++..+|+..||+|+ ...+.+|+++..-+ ...|+|.+-.+.+ ...-++++.||
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 45677664 7777778999999999999998 57789999998865 6788887765221 12335666666
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+... .++. +++-+.-..+...+..+.|++.++.--....+....|...+.
T Consensus 89 e~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 89 EAGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HhCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 5442 3333 456666667777788899999999877777776666555444
No 96
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.27 E-value=0.41 Score=58.24 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=79.6
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004001 88 LKVLLVENDD-ST-----RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~-~~-----r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~ 160 (780)
++||||+++- .. ...|...|++.||+|..+.+..+++..++. ...+..||+++ -. ..+++..||.+ .
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~ 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH-NPRICGVIFDWDEY---SLDLCSDINQL--N 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc-ccceeEEEEecccc---hHHHHHHHHHh--C
Confidence 3688887773 22 455777788899999999999999999885 46788999987 32 25588888765 4
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCC-HHHHHHHHHHHHHHhcc
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHVWRRCHS 211 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~-~eeL~~~L~~llrr~~~ 211 (780)
..+||+++........+-...-.-++.|+..-.. .+.+...|.+..+++..
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 7899999977543332222223335666664433 44555556666666543
No 97
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=94.05 E-value=0.065 Score=63.12 Aligned_cols=58 Identities=9% Similarity=-0.125 Sum_probs=43.2
Q ss_pred CCChhhh--HHHHHHHhh-------hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 3 VDGKADK--RLQELNHCL-------QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l-------~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
++|.|+. -+.+|+..+ ...+...+++||++|++.++|.|+|+|.+|+|++|-+.+|+.
T Consensus 676 dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~ 742 (750)
T COG4251 676 DNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVG 742 (750)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecC
Confidence 5666654 233444444 334456669999999999999999999999999987777654
No 98
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.80 E-value=0.48 Score=57.64 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=77.5
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004001 88 LKVLLVENDD-S-----TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~-~-----~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~ 160 (780)
|+||||+++. . -.+.|...|++.||+|+.+.+..+++..++. ...+..||+|+ - . ..+++..||.+ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~--~ 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDK--Y-NLELCEEISKM--N 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-ccceeEEEEecch--h-hHHHHHHHHHh--C
Confidence 4678887662 1 1456777788899999999999999999885 46788999986 3 1 25588888754 4
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHHhc
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCH 210 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr~~ 210 (780)
..+||+++........+-...-.-+++|+..-- +++.+...|.+..+++.
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYI 125 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 789999997754333222222223455655333 35555555666666554
No 99
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.79 E-value=0.17 Score=55.40 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE-EecCCCHHHHHHHHHCCCCeE
Q 004001 111 GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM-MSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 111 GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv-LSa~~~~e~~~~al~aGAddy 188 (780)
|.++..+.+..++-.... .-.+||+|. +- -.++..+ .+..+ .||+ +....+.+....++++|+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~----~~~~~~~--~p~~~--~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMA----EACAAAG--LPRRR--RVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhh----hHHHhcc--CCCCC--CEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 456777777666644443 246899986 41 1122222 22223 3554 444567888999999999999
Q ss_pred EeCCCCHHHHHHHHHHH
Q 004001 189 LVKPIRKNELKNLWQHV 205 (780)
Q Consensus 189 L~KP~~~eeL~~~L~~l 205 (780)
|.+|++..+|..+|.++
T Consensus 69 l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 69 AVLPEAEGWLVELLADL 85 (322)
T ss_pred eeCCCCHHHHHHHHHhh
Confidence 99999999999998776
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.30 E-value=1.7 Score=42.19 Aligned_cols=105 Identities=9% Similarity=-0.008 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHhhcCCCCccEEEE
Q 004001 95 NDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 95 DD~~~r~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdG-leLl~~IRs~~~~~~iPIIvL 168 (780)
-+..-..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |. .+.. -++++.|++... .+++|+ +
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~gl-~~v~vi-v 86 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAGL-KDILLY-V 86 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCCC-CCCeEE-E
Confidence 344455788999999999998 45678888888887 7899999887 53 3333 467777876543 355544 4
Q ss_pred ecCC------CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHH
Q 004001 169 SSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 169 Sa~~------~~e~~~~al~aGAddyL~KP~~~eeL~~~L~ 203 (780)
-+.. ..+...++.++|++..+...-.++++...|+
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 4432 1334566889999999998888888877664
No 101
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.15 E-value=0.11 Score=57.53 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=36.5
Q ss_pred hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEe
Q 004001 19 QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTA 61 (780)
Q Consensus 19 ~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~ 61 (780)
..++..-+++|++++|+.+||.|+.+|..|+|++|.+++|...
T Consensus 408 ~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 408 KMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred cCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccC
Confidence 3444555699999999999999999999999999988888654
No 102
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=92.90 E-value=1.2 Score=45.92 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=69.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHHhh
Q 004001 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSH 157 (780)
Q Consensus 88 lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~m--dGleLl~~IRs~ 157 (780)
.+||+. |-+..=..++..+|+..||+|+.. ...++.++.+.+ ..||+|.+-. |... ...++++.||+.
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 467777 777777889999999999999843 356788888877 7899999887 6442 345678888765
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
....+++|++=-..-..+ -+-..|||.|-.
T Consensus 161 ~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 161 GLRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred CCCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 433367766554444432 455679988875
No 103
>PRK09303 adaptive-response sensory kinase; Validated
Probab=92.70 E-value=0.12 Score=57.95 Aligned_cols=58 Identities=9% Similarity=-0.174 Sum_probs=42.6
Q ss_pred CCCChhhhH--HHHHHHhhh-------hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADKR--LQELNHCLQ-------AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~r--~~~L~~~l~-------~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.|+|+|..- ..+++..+. ..+.+-+++||+++++.|||.|.+.|.+|.|++|.+.+|+
T Consensus 311 ~D~G~GI~~~~~~~iF~pf~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~ 377 (380)
T PRK09303 311 CDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPV 377 (380)
T ss_pred EEcCCCCCHHHHHHHccCceeCCCCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEec
Confidence 367887652 223333332 1234456999999999999999999999999999988875
No 104
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=92.25 E-value=0.58 Score=44.68 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=73.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH-----HHHHHHHhhc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-----ALLSKIMSHK 158 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGl-----eLl~~IRs~~ 158 (780)
+.+.+.++||.+.........+|...+.+|+.-... ..+-. ..||++|+.+ .+-..-+ .+.+.+ .
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---~ 79 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SALPP--AHYDMMLLGVAVTFRENLTMQHERLAKAL---S 79 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEecccc----cccCh--hhhceeeecccccccCCchHHHHHHHHHH---h
Confidence 346689999999999999999999999999864432 22322 5799999998 6543332 233333 1
Q ss_pred CCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHH
Q 004001 159 TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L 202 (780)
.-+--|+.+-.. ..-...+.+..|+.++|.||++...|+..+
T Consensus 80 -mtd~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 80 -MTDFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred -hhcceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 122223434333 334567888999999999999999988743
No 105
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.59 E-value=2.5 Score=51.84 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=81.1
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHH
Q 004001 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~m--dGleLl~~IR 155 (780)
+..+|+|. |.+..-...+..+|+..||+|.. ..+.+++++.+.+ ..+|+|++-. +... ..-++++.|+
T Consensus 581 ~rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk 658 (714)
T PRK09426 581 RRPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALK 658 (714)
T ss_pred CCceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHH
Confidence 34566654 34445557788899999999973 3567888888876 6788888765 4332 2457888887
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+.. ..+++ |++.+....+....+.++|+|+||..-.+..+++..+.+.+.
T Consensus 659 ~~G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 659 KLG-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred hcC-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 653 22343 445554334445678899999999998888888877777664
No 106
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.72 E-value=5.2 Score=36.90 Aligned_cols=92 Identities=21% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CC-CC-CHHHHHHHHHhhcCCCCccEEEE
Q 004001 95 NDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CL-SGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 95 DD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP-~m-dGleLl~~IRs~~~~~~iPIIvL 168 (780)
-.+.-...+..+|++.||+|... ...++.++.+.+ ..||+|.+.. +. .. ...++++.+|+ ..++++||+=
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~--~~p~~~iv~G 87 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKE--RNPNIPIVVG 87 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHT--TCTTSEEEEE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHh--cCCCCEEEEE
Confidence 34666788999999999999866 345777777877 6899999987 43 22 24567777654 3466666554
Q ss_pred ecCCCHHHHHHHHH--CCCCeEEeC
Q 004001 169 SSLDSMGLVFKCLS--KGAVDFLVK 191 (780)
Q Consensus 169 Sa~~~~e~~~~al~--aGAddyL~K 191 (780)
-... ......+++ .|+|..+.-
T Consensus 88 G~~~-t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 88 GPHA-TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp ESSS-GHHHHHHHHHHHTSEEEEEE
T ss_pred CCch-hcChHHHhccCcCcceecCC
Confidence 4443 334445555 677666543
No 107
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.84 E-value=0.99 Score=46.47 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=54.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCH--HHHHHHHHhhcCCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSG--VALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdG--leLl~~IRs~~~~~~ 162 (780)
++|||||....+---|..+|+..|++|.+..+....+..++. ..||+|++-- -|...| +++++++ ..+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~-----~~~ 74 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF-----AGR 74 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh-----cCC
Confidence 579999999999999999999999998877766444445554 5689999875 344333 3444444 346
Q ss_pred ccEEEEe
Q 004001 163 LPVIMMS 169 (780)
Q Consensus 163 iPIIvLS 169 (780)
+||+-+.
T Consensus 75 ~PiLGVC 81 (191)
T COG0512 75 IPILGVC 81 (191)
T ss_pred CCEEEEC
Confidence 8888765
No 108
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=89.84 E-value=2.4 Score=44.30 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=70.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHhh
Q 004001 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSH 157 (780)
Q Consensus 88 lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi-MP~-md-GleLl~~IRs~ 157 (780)
.+|||. |.+..=..++..+|+..||+|+... ..++.++.+.+ ..+|+|.+-. |+. +. -.++++.|++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~~ 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNRR 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHhc
Confidence 467777 7777778899999999999998543 57788888887 7899999988 653 32 35678888654
Q ss_pred cCCCCccEEEEecCCCHHHHHH---HHHCCCCeEEeCC
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFK---CLSKGAVDFLVKP 192 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~---al~aGAddyL~KP 192 (780)
..+++|++--+....+.... +-..|||.|-.-.
T Consensus 167 --~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 167 --GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred --CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 34777665554444443322 2357998886533
No 109
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=89.28 E-value=2.7 Score=43.22 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=62.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCccEEE
Q 004001 94 ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG-leLl~~IRs~~~~~~iPIIv 167 (780)
|.+..=..++..+|+..||+|+.. ...++.++.+.+ ..||+|.+-. |.. +.. .++++.||+....+.++|++
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~v 172 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMV 172 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 345556678889999999999843 356788888887 7899999988 643 332 46778887654445566554
Q ss_pred EecCCCHHHHHHHHHCCCCeEEe
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~ 190 (780)
=-..-.. .-+.+.|||.|-.
T Consensus 173 GG~~~~~---~~~~~~gad~~~~ 192 (197)
T TIGR02370 173 GGAPVTQ---DWADKIGADVYGE 192 (197)
T ss_pred EChhcCH---HHHHHhCCcEEeC
Confidence 4333332 2355779998864
No 110
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=89.24 E-value=6.8 Score=40.01 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=71.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
--+++|+.+++..++.+..++..|| |.|..+.+.+++++.++.....+.|+..+. +.+ .+ ..||+.-.. .-
T Consensus 31 a~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~---~~ir~~~~~-~~ 104 (176)
T PRK03958 31 ADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VE---PEIREAHRK-GE 104 (176)
T ss_pred CceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hH---HHHHHhhcc-CC
Confidence 3479999999999999999999996 678899999999999975345577777777 644 44 444321111 33
Q ss_pred cEEEEec-CCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSS-LDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa-~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr~~ 210 (780)
|++++-+ ..-+. +.++. .||.+-+- -+.-..+++.-+|.|..
T Consensus 105 p~LIvvGg~gvp~---evye~--aDynlgvg~qpHSvrAAlAI~LDRL~ 148 (176)
T PRK03958 105 PLLIVVGAEKVPR---EVYEL--ADWNVAVGNQPHSEVAALAVFLDRLF 148 (176)
T ss_pred cEEEEEcCCCCCH---HHHhh--CCEEeccCCCChHHHHHHHHHHHHhc
Confidence 5555544 33333 33332 35554221 22345556666666643
No 111
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.58 E-value=7.6 Score=41.63 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=73.6
Q ss_pred ccEEEEEeCCHHHHHHHHH------HHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEE--ccC-C--CCCHHHHHHH
Q 004001 87 SLKVLLVENDDSTRHVVAA------LLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLT--EVM-P--CLSGVALLSK 153 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~------lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLl--DiM-P--~mdGleLl~~ 153 (780)
-+|+=|+.|+.....-+.. .|-+.||.|. ++.|...|-++.. ..+++|.- ... . +..-.++++.
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~---~G~~~vmPlg~pIGsg~Gi~~~~~I~~ 169 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED---AGCAAVMPLGSPIGSGQGLLNPYNLRI 169 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 3566666665533322222 2234599887 4555555555443 35676621 100 0 2222688888
Q ss_pred HHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 004001 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llrr 208 (780)
|++. ..+|||+=..-...+++.++++.|++.+|. |--++..+..++...+..
T Consensus 170 I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 170 IIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 8754 468999888889999999999999999975 655677777776666553
No 112
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=88.54 E-value=0.49 Score=54.32 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=42.6
Q ss_pred CCCChhhhHHHHHHHhh------hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 2 NVDGKADKRLQELNHCL------QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 2 ~~~g~g~~r~~~L~~~l------~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
.|+|+|.. ...+.+.+ ...+..-+++||+++++.+||.|.+++.+|.|++|.+.+|+.
T Consensus 473 ~D~G~gi~-~~~~~~iF~~~~~~~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~ 536 (542)
T PRK11086 473 SDDGPGIA-PDEIDAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWD 536 (542)
T ss_pred EECCCCCC-HHHHHHHHhCCCccCCCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCC
Confidence 36788754 22333333 233456679999999999999999999999999988877753
No 113
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=88.51 E-value=0.38 Score=54.35 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=42.1
Q ss_pred CCCChhhh--HHHHHHHhhhh---------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADK--RLQELNHCLQA---------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~~---------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.|+|+|.. ...+|+..+.. .+.+-+++||+++++.+||.|.++|.+|.|++|.+.+|.
T Consensus 355 ~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~ 423 (430)
T PRK11006 355 EDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPE 423 (430)
T ss_pred EEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEech
Confidence 36788754 22234333321 234456999999999999999999999999998887764
No 114
>PRK10604 sensor protein RstB; Provisional
Probab=88.43 E-value=0.47 Score=53.90 Aligned_cols=37 Identities=16% Similarity=-0.065 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
+-+++||+++++.+||.|.+++.++.|++|.+.+|..
T Consensus 388 GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~ 424 (433)
T PRK10604 388 GLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVW 424 (433)
T ss_pred cchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCC
Confidence 3458999999999999999999999988888877754
No 115
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.72 E-value=3.2 Score=37.74 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=52.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCH-HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEA--TNG-LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A--~dg-~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+||||...+.....++.+|++.|+++... ..+ ......+...-...|+||+=. +.-.-.+...+++.....++|+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t--~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFT--DYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEe--CCcChHHHHHHHHHHHHcCCcE
Confidence 48999998888899999999999998877 222 222112222123568887643 1122334444443333457898
Q ss_pred EEEecCCCHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCL 181 (780)
Q Consensus 166 IvLSa~~~~e~~~~al 181 (780)
++.-... ...+.+++
T Consensus 79 ~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 79 IYSRSRG-VSSLERAL 93 (97)
T ss_pred EEECCCC-HHHHHHHH
Confidence 8775443 33444443
No 116
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.64 E-value=8.7 Score=41.27 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=74.0
Q ss_pred ccEEEEEeCCHHHHHHHH------HHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHH
Q 004001 87 SLKVLLVENDDSTRHVVA------ALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLS 152 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~------~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP-----~mdGleLl~ 152 (780)
=+|+=|+.|+.....-+. +.|-+.||.|. ++.|...|-++.. ..+++|.- + -| +..-.++++
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~---~G~~~vmP-lg~pIGsg~gi~~~~~i~ 168 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE---AGCAAVMP-LGAPIGSGLGLLNPYNLR 168 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH---cCCCEeCC-CCcCCCCCCCCCCHHHHH
Confidence 356767766553322222 22334599887 4556666555443 35777621 1 01 222267888
Q ss_pred HHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 004001 153 KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llrr 208 (780)
.|++. ..+|||+=..-...+++.++++.|++.+|. |--++..+..++...++.
T Consensus 169 ~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 169 IIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 88754 468999988899999999999999999975 655677777776666553
No 117
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=87.62 E-value=0.38 Score=58.65 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=39.7
Q ss_pred hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEecc
Q 004001 19 QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASA 63 (780)
Q Consensus 19 ~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~ 63 (780)
...+...++-+||.-++.|||.|.|+|++|+|++|.+.+|+++..
T Consensus 533 dvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTLaI 577 (716)
T COG0643 533 DVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTLAI 577 (716)
T ss_pred cccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHHHH
Confidence 445566779999999999999999999999999999999988753
No 118
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=87.01 E-value=0.59 Score=54.21 Aligned_cols=36 Identities=3% Similarity=-0.304 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.-+++||+++++.+||.|.++|.+|.|++|.+.+|.
T Consensus 504 GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~ 539 (545)
T PRK15053 504 GIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPK 539 (545)
T ss_pred eeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECC
Confidence 456999999999999999999999999988887764
No 119
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=86.81 E-value=0.59 Score=53.67 Aligned_cols=58 Identities=10% Similarity=-0.107 Sum_probs=42.3
Q ss_pred CCCChhhhHH--HHHHHhhh---hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADKRL--QELNHCLQ---AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~r~--~~L~~~l~---~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.|+|+|.... .+|+..+. ..+..-++.+++++++++||.|.++|.+|.|++|.+.+|+
T Consensus 539 ~D~G~G~~~~~~~~~f~~~~~~~~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~ 601 (607)
T PRK11360 539 EDNGCGIDPELLKKIFDPFFTTKAKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPI 601 (607)
T ss_pred EeCCCCCCHHHHhhhcCCceeCCCCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecC
Confidence 3678886522 23333332 2234556899999999999999999999999998877765
No 120
>PRK10364 sensor protein ZraS; Provisional
Probab=86.52 E-value=0.7 Score=52.55 Aligned_cols=58 Identities=17% Similarity=-0.053 Sum_probs=41.4
Q ss_pred CCCChhhh--HHHHHHHhhh---hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADK--RLQELNHCLQ---AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~---~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.|+|+|.. ...+++..+. ..+..-+++||+++++.+||.+.+++.+|.|++|.+.+|.
T Consensus 386 ~D~G~Gi~~~~~~~if~~~~~~k~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~ 448 (457)
T PRK10364 386 TDSGKGIAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPV 448 (457)
T ss_pred EECCCCCCHHHHHHHhCccccCCCCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecC
Confidence 36788765 2223332221 2234567999999999999999999999998888777765
No 121
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=86.43 E-value=10 Score=38.60 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC--------CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 004001 110 CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL--------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 110 ~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m--------dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
.+..+- .+.+..++++.+. ..+|+|.+.. .|.. .|++.++++++. .+++||+++.+- ..+.+.+
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~v~a~GGI-~~~~i~~ 176 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA--VGDIPIVAIGGI-TPENAPE 176 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHH
Confidence 344433 5566677777665 4689998876 5543 358889998653 345899888766 5778889
Q ss_pred HHHCCCCeEEe-----CCCCHHHHHHHHHHHH
Q 004001 180 CLSKGAVDFLV-----KPIRKNELKNLWQHVW 206 (780)
Q Consensus 180 al~aGAddyL~-----KP~~~eeL~~~L~~ll 206 (780)
++.+||+.+.. +.-++.+....+...+
T Consensus 177 ~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 177 VLEAGADGVAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred HHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHH
Confidence 99999999974 4445555544444443
No 122
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=86.18 E-value=0.89 Score=55.51 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=46.1
Q ss_pred CCChhhh--HHHHHHHhhhhCCC-------CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEe
Q 004001 3 VDGKADK--RLQELNHCLQAGSK-------RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTA 61 (780)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~~~~-------~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~ 61 (780)
|+|+|.. ...+|+..|....+ .-+++||+.||+.|||.|.+....+.|++|.+.+|...
T Consensus 814 DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~ 881 (890)
T COG2205 814 DEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEE 881 (890)
T ss_pred eCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCC
Confidence 6777544 45677777755554 23399999999999999999999999999988887654
No 123
>PRK13560 hypothetical protein; Provisional
Probab=84.46 E-value=0.61 Score=56.18 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=29.5
Q ss_pred CCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+.-+++||++||++|||.|.++|. .|++|.+.+|+
T Consensus 769 ~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~ 803 (807)
T PRK13560 769 ETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPM 803 (807)
T ss_pred CCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecC
Confidence 345699999999999999999984 68888777774
No 124
>PRK10815 sensor protein PhoQ; Provisional
Probab=84.13 E-value=1 Score=52.43 Aligned_cols=55 Identities=11% Similarity=-0.108 Sum_probs=39.6
Q ss_pred CCChhhhHHHHHHHhh---hh-----CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 004001 3 VDGKADKRLQELNHCL---QA-----GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 3 ~~g~g~~r~~~L~~~l---~~-----~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
|+|+|.. ...+.+.+ .. .+.+-+++||+++++.+||.|.+.+.++.|++|.+.++
T Consensus 415 D~G~GI~-~e~~~~iF~~f~~~~~~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp 477 (485)
T PRK10815 415 DDGPGIP-ESKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFG 477 (485)
T ss_pred ECCCCcC-HHHHHHHhCCcccCCCCCCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEc
Confidence 6788765 22333333 11 23455699999999999999999999998888777665
No 125
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=83.19 E-value=6.7 Score=39.99 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=48.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-HHHHHHHHhhc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE---VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHK 158 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye---V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-leLl~~IRs~~ 158 (780)
-+|+.||-++.....|+.-|+..+.. .+...+...++..+......||||++|- -..... .+++..|.+..
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~ 141 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENN 141 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCC
Confidence 47999999999999999999988752 3456787888877743347899999996 333333 56778775433
No 126
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.12 E-value=11 Score=41.33 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=63.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhC---C--CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 90 VLLVENDDSTRHVVAALLRNC---G--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~---G--yeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
|||-|++-.+. .+...+... . ..| +.+.+.++|.+.++. .+|+|++|-|+-.+--++++.|+.....++
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e~l~~~v~~l~~~~~~~~- 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPEEIREVIEALKREGLRER- 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHHHHHHHHHHHHhcCcCCC-
Confidence 88888886655 455555432 1 233 378999999999974 689999998533333444555543221133
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
..|..|+.-..+.+.+..+.|+|-+.
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 36777888888999999999987654
No 127
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=82.30 E-value=1.2 Score=48.65 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=38.8
Q ss_pred CCChhhhHH--HHHHHhhhh-----CCCCCCCcHHHHHHHHhCCcEEeccccC-CcceeeEEEE
Q 004001 3 VDGKADKRL--QELNHCLQA-----GSKRDENAVVGEQQHLVGDDRLNDSSIA-EDVKDGCEGA 58 (780)
Q Consensus 3 ~~g~g~~r~--~~L~~~l~~-----~~~~~~~AIvr~LV~lmGG~I~v~S~~G-~GS~fg~~~~ 58 (780)
|+|.|..-. .+++..+.. .+.+-+++||+++++.+||.+.++|.++ .|++|.+.+|
T Consensus 286 D~G~Gi~~~~~~~if~~f~~~~~~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p 349 (356)
T PRK10755 286 DEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLP 349 (356)
T ss_pred ECCCCCCHHHHHHhCCCeEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEec
Confidence 678877522 233333321 2334468999999999999999999998 8777776665
No 128
>PRK10490 sensor protein KdpD; Provisional
Probab=82.01 E-value=1.3 Score=55.69 Aligned_cols=59 Identities=8% Similarity=-0.080 Sum_probs=42.4
Q ss_pred CCCChhhh--HHHHHHHhhhhC-------CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 2 NVDGKADK--RLQELNHCLQAG-------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~~~-------~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
.|+|+|.. ...+|+..+... +..-+++||++|++.|||.|.++|.++.|++|.+.+|+.
T Consensus 816 ~D~G~GI~~e~~~~IFepF~~~~~~~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~ 883 (895)
T PRK10490 816 WDNGPGIPPGQEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLE 883 (895)
T ss_pred EECCCCCCHHHHHHhcCCCccCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECC
Confidence 36788764 223444443221 224458999999999999999999999998888887753
No 129
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=81.46 E-value=0.93 Score=41.11 Aligned_cols=35 Identities=11% Similarity=-0.079 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 25 ~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.++.+|+.++++++|.+.+.+..+.|++|.+.+|+
T Consensus 76 lGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 76 LGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred hHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 34889999999999999999999998887776663
No 130
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=81.08 E-value=1.2 Score=50.14 Aligned_cols=57 Identities=9% Similarity=-0.111 Sum_probs=40.6
Q ss_pred CCCChhhhHHHHHHHhh---hhC---------CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADKRLQELNHCL---QAG---------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~r~~~L~~~l---~~~---------~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.++|+|.. ...+.+.+ ... +..-+++||+++++++||.+.+++.++.|++|.+.+|+
T Consensus 390 ~D~G~Gi~-~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~ 458 (466)
T PRK10549 390 ADSAPGVS-DEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPL 458 (466)
T ss_pred EecCCCcC-HHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccC
Confidence 36788776 23333333 221 23446899999999999999999999988777776664
No 131
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.82 E-value=16 Score=33.43 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=59.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~d-g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+|+|||.++..... ++..|+.++...- -.+.|+.+.- ...+.||+..-.+..-+.++..+|+. .+.++
T Consensus 20 ~~~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d~~n~~~~~~~r~~--~~~~~ 91 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDDDEENLLIALLAREL--NPDIR 91 (116)
T ss_dssp TTSEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSSHHHHHHHHHHHHHH--TTTSE
T ss_pred CCCEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCCHHHHHHHHHHHHHH--CCCCe
Confidence 34589999999877443 4456787765332 2345555543 46788887652233456677777653 46677
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
||+.... ......+..+|++..+.
T Consensus 92 ii~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 92 IIARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred EEEEECC--HHHHHHHHHCCcCEEEC
Confidence 7776653 45566777899987764
No 132
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=79.00 E-value=14 Score=34.75 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 98 STRHVVAALLRNCGYEVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~~A--~dg~eALe~L~~~~~~pDLVLlDi-MP~m-dGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
.-...+..+|++.|+++... ...++.++.+... ..||+|.+-+ .... ...++++.||+. .++++||+--.+..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~--~p~~~iv~GG~~~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEV--LPNVIVVVGGPHAT 79 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHH--CCCCEEEECCcchh
Confidence 34567889999999887643 3455566666431 5799999887 3332 457788899764 46777665544433
Q ss_pred HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 174 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
. .....+..-..||+..---...|...+..+.
T Consensus 80 ~-~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 80 F-FPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred h-CHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 2 2223233344567776544455555555543
No 133
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=78.95 E-value=1.8 Score=48.55 Aligned_cols=36 Identities=8% Similarity=-0.202 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.-+++||+++++.+||.+.+.+.++.|++|.+.+|+
T Consensus 422 GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~ 457 (461)
T PRK09470 422 GLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPL 457 (461)
T ss_pred chhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeC
Confidence 456999999999999999999999988888877664
No 134
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=78.89 E-value=17 Score=36.88 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc--CCC-CCHHHHHHHHHhhcC
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKT 159 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~-------dg~eALe~L~~~~~~pDLVLlDi--MP~-mdGleLl~~IRs~~~ 159 (780)
|||-|-|...++.+...-++.|.+++... +|++.++++.+....|=+|++|- ..+ ..|-+.++.+-.++.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 66777788888888888888999988554 78999999998666777777775 554 457788888865543
Q ss_pred CCCccEEEEecCC
Q 004001 160 RKNLPVIMMSSLD 172 (780)
Q Consensus 160 ~~~iPIIvLSa~~ 172 (780)
..-+-+|++.++.
T Consensus 83 IeVLG~iAVASnT 95 (180)
T PF14097_consen 83 IEVLGAIAVASNT 95 (180)
T ss_pred ceEEEEEEEEecC
Confidence 2223345555543
No 135
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=78.75 E-value=1.8 Score=48.47 Aligned_cols=36 Identities=8% Similarity=-0.179 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+-+++||+++++.+||.+.+.+..+.|.+|.+.+|+
T Consensus 398 GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~ 433 (435)
T PRK09467 398 GLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPL 433 (435)
T ss_pred ehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeC
Confidence 345999999999999999999999888888777664
No 136
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=78.72 E-value=20 Score=38.31 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=65.7
Q ss_pred ccEEEEEeCCHHH----HH--HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHH
Q 004001 87 SLKVLLVENDDST----RH--VVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLS 152 (780)
Q Consensus 87 ~lrVLIVDDD~~~----r~--~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-----leLl~ 152 (780)
=+|+=|+.|+... .+ .-.+.|.+.||.|. +..|..-|-++.+- .. .+||=+ -|-.+| ...++
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~---Gc-aavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA---GC-AAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT---T--SEBEEBSSSTTT---SSTHHHHH
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC---CC-CEEEecccccccCcCCCCHHHHH
Confidence 3566666665432 22 23456678899998 34444445444432 22 245555 554444 35778
Q ss_pred HHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHH
Q 004001 153 KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVW 206 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~ll 206 (780)
.|++.. ++|||+=.+-.....+..+++.|+|.+|. +--++-.+..+.+...
T Consensus 169 ~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV 224 (247)
T PF05690_consen 169 IIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAV 224 (247)
T ss_dssp HHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHH
Confidence 887543 79999999999999999999999999986 4556666666666554
No 137
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=78.19 E-value=27 Score=36.24 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=58.2
Q ss_pred HHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C------CCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 101 HVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 101 ~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M------P~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
..+...+++ .++.+. .+.+.+++..... ..+|+|.+.. . .....++++++|+... .+|||+..+
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~GG 181 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEGR 181 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEECC
Confidence 344445555 666655 5677788765544 4578886532 1 1223478888887542 689999888
Q ss_pred CCCHHHHHHHHHCCCCeEEe
Q 004001 171 LDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~ 190 (780)
-.+.+.+.++++.||+.++.
T Consensus 182 I~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 182 INTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 88899999999999999875
No 138
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=78.15 E-value=31 Score=31.50 Aligned_cols=105 Identities=17% Similarity=0.288 Sum_probs=59.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+||.||.--..-+..+..++.. .++++. .++...+..+.+.+. ..+. ++.|+ +.+-+.. .+-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~~----------~~ll~~~---~~D~ 65 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTDL----------EELLADE---DVDA 65 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESSH----------HHHHHHT---TESE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhHH----------HHHHHhh---cCCE
Confidence 4677777666666666666665 456665 344333333333221 2333 33331 2221111 2223
Q ss_pred EEEec--CCCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHHH
Q 004001 166 IMMSS--LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVWR 207 (780)
Q Consensus 166 IvLSa--~~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~llr 207 (780)
|+++. ..-.+.+..++++|..=|+-||+ +.+++..+++..-+
T Consensus 66 V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp EEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 33333 23456788999999999999999 78888887776544
No 139
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=77.96 E-value=11 Score=34.68 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=50.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCC-CccEEE
Q 004001 94 ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRK-NLPVIM 167 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~-~iPIIv 167 (780)
|.++.-...+..+|+..||++.... ..++.++.+.. ..||+|.+-. +.. ...+.++..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5667777889999999999988543 55667777766 6899999987 433 23466666775433 4 676665
Q ss_pred Eec
Q 004001 168 MSS 170 (780)
Q Consensus 168 LSa 170 (780)
=-.
T Consensus 86 GG~ 88 (125)
T cd02065 86 GGA 88 (125)
T ss_pred eCC
Confidence 443
No 140
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=77.59 E-value=3.2 Score=42.88 Aligned_cols=59 Identities=10% Similarity=-0.058 Sum_probs=41.4
Q ss_pred CCChhhhHH--HHHHHhhhhC-----CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEe
Q 004001 3 VDGKADKRL--QELNHCLQAG-----SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTA 61 (780)
Q Consensus 3 ~~g~g~~r~--~~L~~~l~~~-----~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~ 61 (780)
|+|+|.... .+++..+-.. +..-+++||+++++.+||.+.+.+.++.|++|.+.+|...
T Consensus 266 D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 266 DTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred cCCCCCCHHHHHHhccCeeccCCCCCCCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 667776633 2333333222 4567799999999999999999999988887766666543
No 141
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=76.65 E-value=26 Score=41.10 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCccEE
Q 004001 96 DDSTRHVVAALLRNCG-YEVTEAT------NGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 96 D~~~r~~L~~lL~~~G-yeV~~A~------dg~eALe~L~~~~~~pDLVLlDi-MP~m-dGleLl~~IRs~~~~~~iPII 166 (780)
.|.-...|...|+..| ++|...+ +.++..+.+.. ..||||.+-. -+.. ...++++.+|+. .|+++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~--~P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARER--LPNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHH--CCCCEEE
Confidence 4667788999999999 5777543 23444555665 6799999876 4443 245777778654 4777766
Q ss_pred EEecCCCHHHHHHHHH-CCCCeEEeCCCCHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLS-KGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 167 vLSa~~~~e~~~~al~-aGAddyL~KP~~~eeL~~~L~~l 205 (780)
+=-.+... ...+++. ....||++.--....|..++..+
T Consensus 97 ~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 97 LGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred EcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 54444332 3344553 34567888766666666666665
No 142
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=76.32 E-value=34 Score=37.06 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=67.8
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 103 VAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 103 L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-----leLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
..+.|-+.||.|.. ..|..-|.++ ++. .. .+||=+ -|-.+| ...++.|++. +++|||+=.+-...
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rL-ed~--Gc-~aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpVivdAGIgt~ 201 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHL-EDI--GC-ATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDAGIGTP 201 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHH-HHc--CC-eEEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEEeCCcCCH
Confidence 34556678999983 3444444444 332 22 345555 454333 3567777653 56999999999999
Q ss_pred HHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 175 GLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 175 e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
+++..+++.|+|+.|. |--++.++...++...+
T Consensus 202 sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 202 SEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 9999999999999964 66788888888887764
No 143
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.52 E-value=55 Score=35.24 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C--CCCCHHHHHHHHHhhcCCC-CccEEEEec
Q 004001 97 DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M--PCLSGVALLSKIMSHKTRK-NLPVIMMSS 170 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M--P~mdGleLl~~IRs~~~~~-~iPIIvLSa 170 (780)
+.....+....+..|.++. .+.+.+|+...+. ..+|+|-+.- + ...+ ++.+.+|... .+ .+++|..++
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d-~~~~~~l~~~--~p~~~~vIaegG 219 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVD-LETTERLAPL--IPSDRLVVSESG 219 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCC-HHHHHHHHHh--CCCCCEEEEEeC
Confidence 4445555555566798765 7888888866554 3578776542 2 1222 6666776532 23 368999999
Q ss_pred CCCHHHHHHHHHCCCCeEEe-----CCCCHHHH
Q 004001 171 LDSMGLVFKCLSKGAVDFLV-----KPIRKNEL 198 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~-----KP~~~eeL 198 (780)
-...+.+.+++++|++.+|. |+-++.+.
T Consensus 220 I~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 220 IFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 99999999999999999865 55555443
No 144
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=75.44 E-value=2.7 Score=47.20 Aligned_cols=58 Identities=16% Similarity=-0.007 Sum_probs=40.6
Q ss_pred CCCChhhhH--HHHHHHhhhh--------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADKR--LQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~r--~~~L~~~l~~--------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.|+|.|+.. ..+|+..+.. .+.+.++.||+++++++||.+.+.|.++.|++|.+.+|.
T Consensus 406 ~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 406 EDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred EECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 367888652 2233333311 234556999999999999999999999888877776654
No 145
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=74.74 E-value=29 Score=35.43 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=52.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gye--V~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+|..||.++.....++.-++..++. +. ...+..+++..+......+|+|++|- .....-.+++..|........--
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~ 153 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTV 153 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCe
Confidence 6999999999999999999888763 33 45566566654432122489999997 54333445666665443333444
Q ss_pred EEEEec
Q 004001 165 VIMMSS 170 (780)
Q Consensus 165 IIvLSa 170 (780)
||++-.
T Consensus 154 iiv~E~ 159 (189)
T TIGR00095 154 LIVVEE 159 (189)
T ss_pred EEEEEe
Confidence 555543
No 146
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=74.08 E-value=5.3 Score=40.59 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=49.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHH--HHHHHHHhhcCCCCcc
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGV--ALLSKIMSHKTRKNLP 164 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~mdGl--eLl~~IRs~~~~~~iP 164 (780)
|||||....+-..|..+|+..|++|..+.+..--++.+.. ..||.||+-- | |..++. .+++.+ ...+|
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~~~~~~~~i~~~-----~~~~P 74 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNEAGISLAVIRHF-----ADKLP 74 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHhCCCchHHHHHh-----cCCCC
Confidence 8999999999999999999999999877755322344443 4678777643 3 322332 333332 24689
Q ss_pred EEEEe
Q 004001 165 VIMMS 169 (780)
Q Consensus 165 IIvLS 169 (780)
|+-+.
T Consensus 75 iLGIC 79 (191)
T PRK06774 75 ILGVC 79 (191)
T ss_pred EEEEC
Confidence 88775
No 147
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=73.89 E-value=27 Score=39.48 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=66.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE---------------VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVA 149 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye---------------V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGle 149 (780)
..++++||-+.+.-...+..++++.|+. |..+....+...++.. .|++++-- ....-|..
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~ 336 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHN 336 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCC
Confidence 3567888888776556677888777763 3333334455555543 58877643 32224555
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCHHHHHHHH-HCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL-SKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~~~~e~~~~al-~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+++.+. ..+|||+--.......+.+.+ +. +++..|-+.++|...|..++.
T Consensus 337 ~lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAA-----FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHH-----hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 666662 357888532222333333333 33 466678899999999988864
No 148
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.83 E-value=38 Score=39.28 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=59.8
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH--HHHHHHHHhhc
Q 004001 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHK 158 (780)
Q Consensus 86 ~~lrVLIVDDD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdG--leLl~~IRs~~ 158 (780)
.+.+|+|++-|..- ...+....+..|+.+..+.+..++.+.+.. ..+|+||+|. .+..+. ++-+..+....
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 45689999988622 223444444557766666667777777764 6799999996 433332 33333332111
Q ss_pred --CCCCccEEEEecCCCHHHHHHHH----HCCCCeEEeC
Q 004001 159 --TRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVK 191 (780)
Q Consensus 159 --~~~~iPIIvLSa~~~~e~~~~al----~aGAddyL~K 191 (780)
..+.-.+++|++.........++ ..|++.+|.=
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 11334577788777665444443 3667776543
No 149
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=73.61 E-value=5.4 Score=41.01 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=49.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCccEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~mdGleLl~~IRs~~~~~~iPII 166 (780)
|||||....+-..|...|++.|+++.++...+..++.+.. ..||.||+-- + |...+. ....|+.. ...+||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~~~~~-~~~~i~~~--~~~~PvL 76 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPNEAGI-SMEVIRYF--AGKIPIF 76 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChHhCCC-chHHHHHh--cCCCCEE
Confidence 8999999999999999999999998877765444444544 4688887743 2 211111 22223211 2468888
Q ss_pred EEe
Q 004001 167 MMS 169 (780)
Q Consensus 167 vLS 169 (780)
-+.
T Consensus 77 GIC 79 (195)
T PRK07649 77 GVC 79 (195)
T ss_pred EEc
Confidence 775
No 150
>PRK10547 chemotaxis protein CheA; Provisional
Probab=73.47 E-value=2.7 Score=51.10 Aligned_cols=41 Identities=12% Similarity=-0.039 Sum_probs=36.5
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEec
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTAS 62 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~ 62 (780)
+...+++||+++++.|||.|.+.|.+|.|++|.+.+|+++.
T Consensus 486 GrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltla 526 (670)
T PRK10547 486 GRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTLA 526 (670)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechhh
Confidence 44557999999999999999999999999999998887764
No 151
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=73.43 E-value=34 Score=39.37 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=66.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.++++||.|.+. +..|+.+.+.......-.-..++..+++.. .|++|+=...+.-|+-+++.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~~E~~g~~vlEAmA-----~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSESETLGFVVLEAMA-----SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCcccccCcHHHHHHH-----cCCCEE
Confidence 567888877654 344555554332222223344667777754 5777653333334666777773 358887
Q ss_pred EEecCCCHHHHHHHHHC---CCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSK---GAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 167 vLSa~~~~e~~~~al~a---GAddyL~KP~~~eeL~~~L~~llr 207 (780)
+..... ..+.+.. |-.+||..|-++++|...|..++.
T Consensus 360 ~s~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AARAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcCCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 543322 2334455 888999999999999999988874
No 152
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=73.19 E-value=13 Score=37.56 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=59.0
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 90 VLLVENDDSTRHVVAALLR----NCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~----~~G--yeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|||-|.+-...-.+...++ ... ..| +.+.+.+++.+.++. .+|+|.+|-|.-.+--++++.|+... +.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~~~~~~v~~l~~~~--~~ 127 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPEDLKEAVEELRELN--PR 127 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHHHHHHHHHHHHHHT--TT
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHHHHHHHHHHHhhcC--Cc
Confidence 6666665554433333333 222 223 378999999999974 58999999843233344555554432 33
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
..|.+|+.-..+.+.+..+.|+|.+-
T Consensus 128 -v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 128 -VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp -SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred -EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 57788888888899999999987664
No 153
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=73.15 E-value=13 Score=37.81 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc-c-C-CCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-M-PCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlD-i-M-P~mdGleLl~~IRs~~~~~~iP 164 (780)
+||||||..+..-..|..+|++.|+++.++.....-.+.+. .+|.||+- = + |.. --.+.+.|+. ....+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~----~~d~iIi~gGp~~~~~-~~~~~~~i~~--~~~~~P 74 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE----NFSHILISPGPDVPRA-YPQLFAMLER--YHQHKS 74 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc----cCCEEEECCCCCChHH-hhHHHHHHHH--hcCCCC
Confidence 58999999988888899999999988776653221123332 46766642 1 2 211 1123445543 234688
Q ss_pred EEEEe
Q 004001 165 VIMMS 169 (780)
Q Consensus 165 IIvLS 169 (780)
|+-+.
T Consensus 75 iLGIC 79 (190)
T PRK06895 75 ILGVC 79 (190)
T ss_pred EEEEc
Confidence 88765
No 154
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=73.04 E-value=16 Score=39.52 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=55.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
.|.+.=.++.+...+..+|...-|.+..+.++++.++.++.....+|++|+.. +..-..++..|.+.. --+|+|++
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~--~~~~~~~~~~L~e~g--~LLPaVil 77 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQ--SPLLPPLFNQLYEQG--ILLPAVIL 77 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEET--TSTTHHHHHHHHHCT------EEEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEec--CCCcHHHHHHHHHcC--ccccEEEE
Confidence 45566677888899999998888999999999999999987667899999876 223466788886554 45899988
Q ss_pred ecC
Q 004001 169 SSL 171 (780)
Q Consensus 169 Sa~ 171 (780)
...
T Consensus 78 ~~~ 80 (283)
T PF07688_consen 78 GSS 80 (283)
T ss_dssp S--
T ss_pred ecC
Confidence 663
No 155
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=72.26 E-value=45 Score=34.55 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=56.5
Q ss_pred HHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C------CCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 103 VAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 103 L~~lL~~~G-yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M------P~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
+...+++.+ ..+. .+.+.+++..... ..+|+|.+.. . .....+++++.|++.. ++|||+..+-.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~ 187 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCC
Confidence 333344444 5544 5677888866654 3578775431 1 1123578889987532 69999988888
Q ss_pred CHHHHHHHHHCCCCeEEeC
Q 004001 173 SMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~K 191 (780)
+.+.+.+++..||+.++.-
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8999999999999998763
No 156
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=71.71 E-value=47 Score=34.49 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+.++.+.+ ..++ ++++|+ --+ +.| ++++++|++. ..+|||+-.+-.+.+.+.++++.||++++.
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44555565655 4466 677876 322 223 6888888654 468999988889999999999999999885
No 157
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.13 E-value=44 Score=38.74 Aligned_cols=108 Identities=10% Similarity=0.158 Sum_probs=59.7
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEcc--CCCCCHHHHHHHHHhh-
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLT--NHIDLVLTEV--MPCLSGVALLSKIMSH- 157 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~--~~pDLVLlDi--MP~mdGleLl~~IRs~- 157 (780)
.+.+|++|+-|.. ..+.|....+..|+.+..+.+..+..+.+.... ..+|+||+|. ....+ .+.+++|++.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd-~~lm~EL~~~l 346 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA-SETVEEMIETM 346 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcC-HHHHHHHHHHH
Confidence 4568999998764 334455555566888887777766655554321 2589999997 22222 2333333221
Q ss_pred -cCCCCccEEEEecCCCHHH---HHHH-HHCCCCeEEeCCCC
Q 004001 158 -KTRKNLPVIMMSSLDSMGL---VFKC-LSKGAVDFLVKPIR 194 (780)
Q Consensus 158 -~~~~~iPIIvLSa~~~~e~---~~~a-l~aGAddyL~KP~~ 194 (780)
...++-.+++|++...... +.+. -..+.+.+|.-=++
T Consensus 347 k~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 GQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred hhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 1234444566766433322 2222 34678887654333
No 158
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=71.00 E-value=13 Score=37.92 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=48.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCccEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~mdGleLl~~IRs~~~~~~iPII 166 (780)
|||||....+-..+..+|+..|+++....+....++.+.. ..||.||+-- + |..++.+ ...|+.. ...+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~~~~~-~~~i~~~--~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNEAGIS-LEAIRHF--AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcchh-HHHHHHh--ccCCCEE
Confidence 8999999999999999999999998876643322344443 4688666522 2 2222322 3344322 2468988
Q ss_pred EEe
Q 004001 167 MMS 169 (780)
Q Consensus 167 vLS 169 (780)
-+.
T Consensus 77 GIC 79 (188)
T TIGR00566 77 GVC 79 (188)
T ss_pred EEC
Confidence 775
No 159
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=70.89 E-value=5 Score=44.36 Aligned_cols=56 Identities=13% Similarity=-0.044 Sum_probs=39.7
Q ss_pred CCChhhhHHHHHHHhh------hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 3 VDGKADKRLQELNHCL------QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 3 ~~g~g~~r~~~L~~~l------~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
|||+|-. ..-+.+.| .-.+..-+++|++.|+..+||.|..+|.+|. ++|.+.+|+.
T Consensus 294 DNGPGVP-~~L~~~lF~P~Vs~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~ 355 (363)
T COG3852 294 DNGPGVP-PDLQDHLFYPMVSGREGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIR 355 (363)
T ss_pred cCCCCCC-hHHhhhccccccccCCCCccccHHHHHHHHHhcCCEEEEeccCCc-eEEEEEeecc
Confidence 6788765 22333333 2333455699999999999999999999996 6676666643
No 160
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.74 E-value=47 Score=38.41 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=59.9
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCC--HHHHHHHHHhhc
Q 004001 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLS--GVALLSKIMSHK 158 (780)
Q Consensus 86 ~~lrVLIVDDD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~md--GleLl~~IRs~~ 158 (780)
.+.+|+||+-|+.- .+.|...-+..|+.+..+.+..+....+... ..+|+||+|. +...+ .++.+..+....
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 35689999988742 2334444455677777777777766666653 4689999997 43333 233343332211
Q ss_pred CCCCccEEEEecCCCHHHHHHHH----HCCCCeEEeC
Q 004001 159 TRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVK 191 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~al----~aGAddyL~K 191 (780)
..+.-.+++|++........+++ ..+++.+|.-
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~T 365 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFT 365 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEe
Confidence 12323367777766654444332 3466565443
No 161
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.46 E-value=35 Score=39.48 Aligned_cols=108 Identities=13% Similarity=0.186 Sum_probs=70.6
Q ss_pred CccEEEEEeC---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 86 RSLKVLLVEN---DDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 86 ~~lrVLIVDD---D~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
..++++|+.+ ++...+.+..++++.|. .|.... ..+..+++.. .|++++-...+.-++.+++.+.
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~~Eg~p~~vlEAma----- 392 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSISEGQPLVILEAMA----- 392 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCchhhcCChHHHHHHH-----
Confidence 3567788754 34556677777777765 455444 4455555543 6888775533344677888873
Q ss_pred CCccEEEEecCCCHHHHHHHHHC------CCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSK------GAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~a------GAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+ |.... ..+.+.. |..+++..|-++++|..+|.+++.
T Consensus 393 ~G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 393 AGIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred cCCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 4578876 44332 2334444 678999999999999999999874
No 162
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=70.42 E-value=7.5 Score=39.58 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=55.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCccEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~mdGleLl~~IRs~~~~~~iPII 166 (780)
|||||....+-..|..+|++.|+++..+.+.+..++.+.. ..||.||+-- + |..++. ....++. ....+||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~-~~~~~~~--~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGI-SLDVIRH--YAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCc-cHHHHHH--hcCCCCEE
Confidence 8999999999999999999999988877665323444443 4688877754 2 333332 1223322 13468988
Q ss_pred EEecCCCHHHHHHHHHCCCC
Q 004001 167 MMSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAd 186 (780)
-+.- ....-+...|+.
T Consensus 77 GICl----G~Q~la~a~Gg~ 92 (187)
T PRK08007 77 GVCL----GHQAMAQAFGGK 92 (187)
T ss_pred EECH----HHHHHHHHcCCE
Confidence 7752 333444555653
No 163
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=70.05 E-value=32 Score=34.95 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=56.6
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCC
Q 004001 107 LRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 107 L~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGA 185 (780)
.+..+..+. -+.+.+|+.+.++ ..+|+|-++-.+.. |.++++.|+. ..+.+|++.+-+- ..+.+.+++++|+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~---~Gad~i~~~p~~~~-g~~~~~~l~~--~~~~~p~~a~GGI-~~~n~~~~~~~G~ 165 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE---LGADIVKLFPAEAV-GPAYIKALKG--PFPQVRFMPTGGV-SLDNAAEWLAAGV 165 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH---CCCCEEEEcCCccc-CHHHHHHHHh--hCCCCeEEEeCCC-CHHHHHHHHHCCC
Confidence 344455443 6779999988876 46898988654333 8999999964 3456888877666 7788999999998
Q ss_pred CeEEeC
Q 004001 186 VDFLVK 191 (780)
Q Consensus 186 ddyL~K 191 (780)
+.+..-
T Consensus 166 ~~v~v~ 171 (190)
T cd00452 166 VAVGGG 171 (190)
T ss_pred EEEEEc
Confidence 877543
No 164
>PRK12704 phosphodiesterase; Provisional
Probab=70.02 E-value=7.8 Score=45.88 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=38.6
Q ss_pred cEEEEecCCCHH--HHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMG--LVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e--~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.+|+||+.+... ....+++.++.|++.||++++++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 378899988766 788999999999999999999999988876543
No 165
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=70.01 E-value=32 Score=37.65 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=67.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++++|+.+.+. +..+..+++..+.. |.......+..+++.. .|++|+=...+.-|.-+++.+. ..+|
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~~Eg~~~~~lEAma-----~G~P 298 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSLAEGISNTILEAMA-----SGLP 298 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccccccCchHHHHHHH-----cCCC
Confidence 456777776543 35566666666542 3333334455555543 5666643222334667888773 3578
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
||+ |.... ..+.+..|..+++..|-+.++|...|..++.
T Consensus 299 vv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 299 VIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred EEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 876 43322 3445667888999999999999999998864
No 166
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=69.88 E-value=42 Score=37.09 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=61.6
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CC----CCCHHHHHHHHHhhcCCCCccEEEEecCCCHH
Q 004001 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (780)
Q Consensus 103 L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP----~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e 175 (780)
+...|+..|..|. .+.+.++|..+.+ ..+|.|++.- .. ...-+.++.++++. -++|||+--+-.+..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 5556677788766 6788888876665 3589888743 12 22348888988753 258999988888889
Q ss_pred HHHHHHHCCCCeEEeC
Q 004001 176 LVFKCLSKGAVDFLVK 191 (780)
Q Consensus 176 ~~~~al~aGAddyL~K 191 (780)
.+..++..||+.++.=
T Consensus 175 ~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 175 GMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHcCCCEeecc
Confidence 8999999999998753
No 167
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.62 E-value=20 Score=39.03 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=59.2
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 90 VLLVENDDSTRHVVAALL----RNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL----~~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|||-|.+-.....+...+ ....+ .| +.+.+.+||++.++. .+|+|++|-|.-.+--++++.++ ...++
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~~~e~l~~~v~~~~--~~~~~ 229 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNMSVEEIKEVVAYRN--ANYPH 229 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhh--ccCCC
Confidence 666666544443344444 33443 23 378999999999974 68999998742212222333321 11234
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+ +|..++.-..+.+.++.+.|+|-+.+
T Consensus 230 ~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 230 V-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred e-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3 56678788999999999999976653
No 168
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=69.60 E-value=22 Score=38.81 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=62.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCEE---EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHVVAALLRN----CGYEV---TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~----~GyeV---~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
-|||=|++-...-.+...+++ .+|.+ +.+++.+++.+.++. .+|+|++|-|+...--++++.+ . ..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e~~~~av~~l---~-~~ 232 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPEELKEAVKLL---G-LA 232 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHHHHHHHHHHh---c-cC
Confidence 377777776666545555543 36533 378999999999974 6899999985432333344443 1 22
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
.-.++-.|+.-..+.+......|+|-+
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 233 GRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 345677788889999999999998644
No 169
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=69.57 E-value=48 Score=36.05 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=61.6
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 004001 103 VAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 103 L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
|++.|..-... +......-.+.+++.. ..||.|++|+ -...+--++...|+.-.... ++.|+=....+...+.+
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g-~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAPYA-SQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHhcC-CCeEEECCCCCHHHHHH
Confidence 55556543221 2222233456676765 5699999999 66666666666665443333 44444455667788999
Q ss_pred HHHCCCCeEEeCCCC-HHHHHHHHHH
Q 004001 180 CLSKGAVDFLVKPIR-KNELKNLWQH 204 (780)
Q Consensus 180 al~aGAddyL~KP~~-~eeL~~~L~~ 204 (780)
+|++||+++|.-=+. .++...+++.
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 999999999986665 4444444443
No 170
>PRK09835 sensor kinase CusS; Provisional
Probab=68.98 E-value=4.5 Score=45.83 Aligned_cols=36 Identities=8% Similarity=-0.208 Sum_probs=28.8
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
+.+.+++||+++++.+||.+.++|.. .|++|.+.+|
T Consensus 444 g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP 479 (482)
T PRK09835 444 GSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLP 479 (482)
T ss_pred CcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEee
Confidence 34457999999999999999999874 5777766665
No 171
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=68.80 E-value=4.6 Score=47.51 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=44.8
Q ss_pred CCCChhhhHHHHHHHhh------hh-CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 2 NVDGKADKRLQELNHCL------QA-GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 2 ~~~g~g~~r~~~L~~~l------~~-~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
.|+|+|.. .....+.+ .. +....++.+|+.+|+.+||.|.++|..+.|++|.+.+|..
T Consensus 468 ~D~G~GI~-~~~~~~iFe~G~Stk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~ 532 (537)
T COG3290 468 ADTGPGIP-PEVRDKIFEKGVSTKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKV 532 (537)
T ss_pred eCCCCCCC-hHHHHHHHhcCccccCCCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCC
Confidence 47788776 44444555 22 4445669999999999999999999999999998887764
No 172
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=68.79 E-value=48 Score=35.74 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHH
Q 004001 101 HVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 101 ~~L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~ 177 (780)
..|+..|..-... +......-.+.+++.. ..||.|++|+ -..+|--++...|+.-.... ++.|+=....+...+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g-~~~lVRvp~~~~~~i 84 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKGSA-SAPVVRVPTNEPVII 84 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhhcC-CCcEEECCCCCHHHH
Confidence 3466666653322 2222333466677765 5699999999 66666666666665443333 444444555678889
Q ss_pred HHHHHCCCCeEEeCCC-CHHHHHHHHHH
Q 004001 178 FKCLSKGAVDFLVKPI-RKNELKNLWQH 204 (780)
Q Consensus 178 ~~al~aGAddyL~KP~-~~eeL~~~L~~ 204 (780)
.++++.|+++++.-=+ +.++...+++.
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 9999999999987544 45555555444
No 173
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.63 E-value=84 Score=35.26 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=66.3
Q ss_pred EEEEEe----CCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC--H
Q 004001 89 KVLLVE----NDDSTRHVVAALLRNCG-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS--G 147 (780)
Q Consensus 89 rVLIVD----DD~~~r~~L~~lL~~~G-yeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------md--G 147 (780)
.+|+|| +.....+.++.+=+.+. ..|. .+.+.++|..++. ..+|+|++-.-++ .. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~---aGad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH---cCcCEEEECCCCCcccccccccCCCCCccH
Confidence 578885 33444455555544443 4444 3779999988876 3588877553222 11 4
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
+..+..+++. ..+|||.-.+-....++.+|+.+||+.+..=
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 5567777643 3589999999999999999999999988764
No 174
>PRK14974 cell division protein FtsY; Provisional
Probab=68.61 E-value=54 Score=36.85 Aligned_cols=105 Identities=15% Similarity=0.233 Sum_probs=57.5
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHH
Q 004001 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATNG-------LQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~dg-------~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~ 153 (780)
.+.+|+|++-|. ...+.|.......|+.+.....+ .++++.+.. ..+|+||+|. +...+ .+++..
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~~~~-~~lm~e 243 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRMHTD-ANLMDE 243 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCccCCc-HHHHHH
Confidence 456899998773 33455666666678766643322 244555544 5689999997 22212 233333
Q ss_pred HHh--hcCCCCccEEEEecCCCHHHHH--HHH--HCCCCeEEeCCC
Q 004001 154 IMS--HKTRKNLPVIMMSSLDSMGLVF--KCL--SKGAVDFLVKPI 193 (780)
Q Consensus 154 IRs--~~~~~~iPIIvLSa~~~~e~~~--~al--~aGAddyL~KP~ 193 (780)
|+. +...++..++++.+....+... +.+ ..+++.+|.==+
T Consensus 244 L~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 244 LKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred HHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeee
Confidence 322 1124566677776655433332 222 367888765333
No 175
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.51 E-value=93 Score=32.05 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=54.2
Q ss_pred HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC
Q 004001 108 RNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 183 (780)
Q Consensus 108 ~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a 183 (780)
...|..+. .+.+.+++.+..+ ..+|+|.+-- .....+++++++|++.- ...+|||+..+-...+.+.+++++
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~---~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~-~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA---LGAKIIGINNRDLKTFEVDLNTTERLAPLI-PKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH---cCCCEEEEeCCCccccCcCHHHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHc
Confidence 45688765 5667777665554 3567775542 11123457788886431 146899999999898999999999
Q ss_pred CCCeEEe
Q 004001 184 GAVDFLV 190 (780)
Q Consensus 184 GAddyL~ 190 (780)
||++++.
T Consensus 194 Ga~gviv 200 (217)
T cd00331 194 GADAVLI 200 (217)
T ss_pred CCCEEEE
Confidence 9999974
No 176
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=67.79 E-value=6.6 Score=46.70 Aligned_cols=56 Identities=11% Similarity=-0.074 Sum_probs=41.3
Q ss_pred CCCChhhhHHHHHHHhh---h-----hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 004001 2 NVDGKADKRLQELNHCL---Q-----AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 2 ~~~g~g~~r~~~L~~~l---~-----~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
.|||+|.. ...+.++| . -.+-.-+++|+..|++-|||.|.+.+.++.|..|.+.++
T Consensus 537 rDnGpGi~-~e~~~~lFePF~TtK~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~ 600 (603)
T COG4191 537 RDNGPGIA-PEALPHLFEPFFTTKPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELR 600 (603)
T ss_pred ccCCCCCC-HHHHHhhcCCccccCcccCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEee
Confidence 47888775 33444444 2 222344599999999999999999988888888877765
No 177
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.78 E-value=75 Score=32.90 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=59.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcC
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKT 159 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-------mdGleLl~~IRs~~~ 159 (780)
..+++-+.. . ..+...++..+..+. .+.+.+++....+ ...|.|+++. -.+ ...+++++++++.
T Consensus 82 d~v~l~~~~-~-~~~~~~~~~~~i~~i~~v~~~~~~~~~~~---~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-- 154 (236)
T cd04730 82 PVVSFSFGP-P-AEVVERLKAAGIKVIPTVTSVEEARKAEA---AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-- 154 (236)
T ss_pred CEEEEcCCC-C-HHHHHHHHHcCCEEEEeCCCHHHHHHHHH---cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH--
Confidence 344444442 2 233444555566655 4456566554443 3478888754 221 2457788888653
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.++||++.-+-...+.+.+++..|++.++.-
T Consensus 155 -~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 -VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred -hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2589998888777788999999999988763
No 178
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=67.77 E-value=29 Score=35.85 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=40.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
..++++||-|......|.+-++.+++ ++. ...+...+|..+.. ...||||++|-
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVflDP 122 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVFLDP 122 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEEeCC
Confidence 34799999999999999999998873 333 34455566666654 12499999997
No 179
>PRK05637 anthranilate synthase component II; Provisional
Probab=67.67 E-value=17 Score=37.86 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.+|||||....+-..|..+|+..|+.+.++..... ++.+.. ..||.||+-- +.-.+..+..+.|+.. ...+||
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIlsgGPg~~~d~~~~~~li~~~--~~~~Pi 76 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICLSPGPGHPRDAGNMMALIDRT--LGQIPL 76 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEEeCCCCCHHHhhHHHHHHHHH--hCCCCE
Confidence 37999999999999999999999998887765322 333333 4678777732 2111221223334321 236898
Q ss_pred EEEe
Q 004001 166 IMMS 169 (780)
Q Consensus 166 IvLS 169 (780)
+-+-
T Consensus 77 LGIC 80 (208)
T PRK05637 77 LGIC 80 (208)
T ss_pred EEEc
Confidence 8775
No 180
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.66 E-value=61 Score=34.71 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=57.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-CCCCHH
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPIRKN 196 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-KP~~~e 196 (780)
.....++.+.. ..||.|++|+ -...+--++...|+....... .+|+=....+...+.++++.|+++++. |--+.+
T Consensus 21 ~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~-~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e 97 (249)
T TIGR02311 21 ADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAPYPS-SPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAE 97 (249)
T ss_pred CCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCC-CcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHH
Confidence 33456777765 5699999999 555677777777765432233 334444555667889999999999865 556777
Q ss_pred HHHHHHHHH
Q 004001 197 ELKNLWQHV 205 (780)
Q Consensus 197 eL~~~L~~l 205 (780)
++..+++.+
T Consensus 98 ~a~~~v~~~ 106 (249)
T TIGR02311 98 QAEAAVAAT 106 (249)
T ss_pred HHHHHHHHc
Confidence 777666654
No 181
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.19 E-value=56 Score=34.73 Aligned_cols=56 Identities=11% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
++++++++|.. ..+||++|+-... ...+.++.++|+++++.-.+.++++...+..+
T Consensus 64 ~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 45666666543 2688988887553 56678899999999999766667665555544
No 182
>PRK13566 anthranilate synthase; Provisional
Probab=66.90 E-value=23 Score=43.77 Aligned_cols=80 Identities=29% Similarity=0.411 Sum_probs=52.9
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCC-CCHHHHHHHHHhhcC
Q 004001 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPC-LSGVALLSKIMSHKT 159 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi---MP~-mdGleLl~~IRs~~~ 159 (780)
+..+++|||||....+...|..+|++.|++|..+..... .+.+.. ..||.||+-- .|. ..-.++++++.
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~---- 595 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAAL---- 595 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHH----
Confidence 446789999999988999999999999999987665432 233333 4689877631 121 12234444442
Q ss_pred CCCccEEEEec
Q 004001 160 RKNLPVIMMSS 170 (780)
Q Consensus 160 ~~~iPIIvLSa 170 (780)
..++||+-+.-
T Consensus 596 ~~~iPILGICl 606 (720)
T PRK13566 596 ARNLPIFGVCL 606 (720)
T ss_pred HCCCcEEEEeh
Confidence 24689887753
No 183
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.50 E-value=65 Score=33.82 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=57.6
Q ss_pred HHHHHHhCCC-EEEEECCHHHHHHHHHhcC-CCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 004001 103 VAALLRNCGY-EVTEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 103 L~~lL~~~Gy-eV~~A~dg~eALe~L~~~~-~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
+...|...+. -|+...+.++|++.++... ..++ ++.+ |-.-.+++.++.|++. ++++ +|..-.-.+.+....
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~--~p~~-~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE--VPEA-LIGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH--CCCC-EEEEeeccCHHHHHH
Confidence 3345555554 4556778888887776531 2244 4455 5555799999999754 3553 233333445678889
Q ss_pred HHHCCCCeEEeCCCCHHHHHHHHH
Q 004001 180 CLSKGAVDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 180 al~aGAddyL~KP~~~eeL~~~L~ 203 (780)
++++||+ |++-|.--.++.....
T Consensus 83 a~~aGA~-FivsP~~~~~vi~~a~ 105 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTPPLLKAAQ 105 (212)
T ss_pred HHHcCCC-EEECCCCCHHHHHHHH
Confidence 9999985 6666655556554433
No 184
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=66.38 E-value=23 Score=38.77 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=61.9
Q ss_pred EEEEEeCCHHHH-------HHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 89 KVLLVENDDSTR-------HVVAALLRNCG-Y-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 89 rVLIVDDD~~~r-------~~L~~lL~~~G-y-eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
.|||-|++-... ..+..+=+... . -.+.+.+.++|.+.+.. .+|+|++|-|+-.+-.++++.|++.
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lDn~~~e~l~~~v~~l~~~-- 232 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLDKFTPQQLHHLHERLKFF-- 232 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEECCCCHHHHHHHHHHHhcc--
Confidence 367777664443 33333322222 2 23478899999999974 6899999975444445556666421
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.+.+ +|..++.-..+.+......|+|-+.
T Consensus 233 ~~~~-~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 233 DHIP-TLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CCCE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2333 6778888899999999999987654
No 185
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=66.08 E-value=1e+02 Score=31.13 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCceEEEEcc--CC----CCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 99 TRHVVAALLRNCGYEVT----EATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~----~A~dg~eALe~L~~~~~~pDLVLlDi--MP----~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
....+...+++.|..+. .+.+..++++.+. ...|+|++.. .+ ...+.+.++++++. .++||++.
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~ 164 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVA 164 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEE
Confidence 34455566667777654 4557788877443 4678887753 12 23457777777643 46787766
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
-+- ..+.+.+++++||+.++.
T Consensus 165 GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 165 GGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred CCc-CHHHHHHHHhcCCCEEEE
Confidence 555 578899999999998864
No 186
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=65.91 E-value=38 Score=34.12 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=49.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCC--------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCC
Q 004001 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi-MP~--------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAd 186 (780)
.+.+.+++.+.++ ..+|+|+++. .+. ..|+++++++.+. .+.+||+++-+- ..+.+.+++..|++
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~--~~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT--SIDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 6677777766444 4689998876 442 2378999888543 345898888666 47788889999998
Q ss_pred eEEe
Q 004001 187 DFLV 190 (780)
Q Consensus 187 dyL~ 190 (780)
++..
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8764
No 187
>PRK07695 transcriptional regulator TenI; Provisional
Probab=65.73 E-value=1.5e+02 Score=30.33 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=56.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCe
Q 004001 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 187 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAdd 187 (780)
.+.+.+++.+..+ ...|.|++.. .|. ..|++.+++++.. ..+||+++-+- ..+.+.+++..|++.
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSG 173 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCE
Confidence 5667777665443 4678888764 332 2367888888643 35899988777 778889999999988
Q ss_pred EE-----eCCCCHHHHHHHHHHHHHH
Q 004001 188 FL-----VKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 188 yL-----~KP~~~eeL~~~L~~llrr 208 (780)
+. .+.-++.+....+..+++.
T Consensus 174 vav~s~i~~~~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 174 IAVMSGIFSSANPYSKAKRYAESIKK 199 (201)
T ss_pred EEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence 73 2333455555555555543
No 188
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=65.70 E-value=97 Score=34.66 Aligned_cols=108 Identities=12% Similarity=0.163 Sum_probs=63.3
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 87 SLKVLLVENDD--------STRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 87 ~lrVLIVDDD~--------~~r~~L~~lL~~~GyeV~~A~--dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.++++||.+.+ .....+..+....+-.|.... ..++..+++.. .|++++=. ..+.-|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 45666665432 223344444444454554433 34555666653 57776543 33333566677662
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeE-EeCCCCHHHHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF-LVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddy-L~KP~~~eeL~~~L~~llr 207 (780)
..+|||.. .... ..+.+..|..+| +..|.+.++|...|..++.
T Consensus 300 -----~G~PVI~s-~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 -----AGKPVLAS-TKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred -----cCCCEEEe-CCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 35788764 3322 234556788888 5679999999999998874
No 189
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.68 E-value=70 Score=33.93 Aligned_cols=90 Identities=16% Similarity=0.047 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEccCCCCC------HHHHHHHHHhhcCCCCccEEEEe
Q 004001 99 TRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEVMPCLS------GVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~dg---~eALe~L~~~~~~pDLVLlDiMP~md------GleLl~~IRs~~~~~~iPIIvLS 169 (780)
....+...+++.|.++..+-+. .+.++.+.. ....++++-++|+.. -.+.+++||+.. +..||++=.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~g 192 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVGF 192 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEeC
Confidence 3445667778889877644333 445554443 334567672276632 234666665432 345765444
Q ss_pred cCCCHHHHHHHHHCCCCeEEeCC
Q 004001 170 SLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 170 a~~~~e~~~~al~aGAddyL~KP 192 (780)
+-...+.+.+++++|||.++.--
T Consensus 193 GI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 193 GLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CcCCHHHHHHHHHcCCCEEEECH
Confidence 44477888888999999998753
No 190
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=65.55 E-value=24 Score=35.85 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc--CCCC----CHHHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 103 VAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPCL----SGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 103 L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi--MP~m----dGleLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
+...|+..||.+.. +..+...++.+.. ..||.|-+|. +-.+ ....+++.|........++ |+++.-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCCH
Confidence 45556778998875 4566677777876 6799999996 3222 2345555554332223444 457788888
Q ss_pred HHHHHHHHCCCCe----EEeCCCCH
Q 004001 175 GLVFKCLSKGAVD----FLVKPIRK 195 (780)
Q Consensus 175 e~~~~al~aGAdd----yL~KP~~~ 195 (780)
+....+...|++. |+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 8889999999843 35577654
No 191
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=65.36 E-value=5.3 Score=46.43 Aligned_cols=35 Identities=6% Similarity=-0.088 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 25 ~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
-+++||+++++.+||.|.++|.+|.|++|.+.+|.
T Consensus 525 lGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~ 559 (565)
T PRK10935 525 YGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPS 559 (565)
T ss_pred cCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECC
Confidence 45899999999999999999999998887776653
No 192
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=65.30 E-value=90 Score=32.71 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=43.9
Q ss_pred ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+=. ..+.-|+.+++.+. ..+|||+ |... ...+.+..+..+++.++-+.++|...|..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA-----AGVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH-----CCCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46655433 23445667777773 3477775 3322 23455677778999999999999999999875
No 193
>PRK04302 triosephosphate isomerase; Provisional
Probab=65.07 E-value=1.8e+02 Score=30.31 Aligned_cols=80 Identities=15% Similarity=0.043 Sum_probs=49.7
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc---CC---C-----CCH-HHHHHHHHhhcCCCCccEEEEecCC
Q 004001 106 LLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV---MP---C-----LSG-VALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 106 lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi---MP---~-----mdG-leLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
.....|+.++ ++.+.+++.. +.. ..+|+|-+.- +. + ... .++++.||+. ..++|||.-.+-.
T Consensus 109 ~a~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~--~~~~pvi~GggI~ 183 (223)
T PRK04302 109 RAKKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV--NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc--cCCCEEEEECCCC
Confidence 3345788766 4555455443 433 4567665421 10 1 111 3455666542 2468999888888
Q ss_pred CHHHHHHHHHCCCCeEEe
Q 004001 173 SMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~ 190 (780)
..+.+..++..|+|++|.
T Consensus 184 ~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 184 TGEDVKAALELGADGVLL 201 (223)
T ss_pred CHHHHHHHHcCCCCEEEE
Confidence 889999999999999986
No 194
>PLN02335 anthranilate synthase
Probab=64.89 E-value=15 Score=38.54 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=48.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~mdGleLl~~IRs~~~~~~i 163 (780)
..+|||||....+-..|...|+..|+.+.++......++.+.. ..||.||+-- + |...+ ..++.++. ....+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~--~~~~~ 92 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLE--LGPLV 92 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHH--hCCCC
Confidence 4589999987778888999999999988876543211333333 4577777643 3 32222 23444543 23568
Q ss_pred cEEEEe
Q 004001 164 PVIMMS 169 (780)
Q Consensus 164 PIIvLS 169 (780)
||+-+.
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 988765
No 195
>PRK14098 glycogen synthase; Provisional
Probab=64.61 E-value=65 Score=37.78 Aligned_cols=113 Identities=6% Similarity=0.021 Sum_probs=62.9
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDD-STRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~-~~r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++|+.+-+ .....|+.+.++.+-.|.. .-+..++.+++.. .|++|+=...+.-|+..++.++ ..+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~~E~~Gl~~lEAma-----~G~ 406 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGKIESCGMLQMFAMS-----YGT 406 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCCCCCchHHHHHHHh-----CCC
Confidence 45666666533 2445566665555433332 2244444444533 5777653333445677777764 234
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|+|+...-...+.+......+..+|+..|.++++|..+|.+++..
T Consensus 407 ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 407 IPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred CeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 555433222222332222336789999999999999999987654
No 196
>CHL00101 trpG anthranilate synthase component 2
Probab=64.50 E-value=15 Score=37.46 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=47.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
|||||.....-..|.+.|+..|+.+..+......+..+.. ..||.||+-- .|..++ +...|.+. ....+||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg~~~~~~--~~~~i~~~-~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPGHPRDSG--ISLDVISS-YAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCCChHHCc--chHHHHHH-hcCCCcEE
Confidence 8999999999999999999999988877654322333332 3588777632 122222 22233221 23568888
Q ss_pred EEe
Q 004001 167 MMS 169 (780)
Q Consensus 167 vLS 169 (780)
-+.
T Consensus 77 GIC 79 (190)
T CHL00101 77 GVC 79 (190)
T ss_pred EEc
Confidence 775
No 197
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=64.44 E-value=53 Score=32.41 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC--------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHH
Q 004001 111 GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 111 GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~--------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
+..+- .+.+..++.+.+. ..+|+|++.. .|. ..+++.++++++. .++||+++.+-. .+.+.++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi~-~~~i~~~ 167 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGIT-PENAAEV 167 (196)
T ss_pred CCEEEeeCCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHHHH
Confidence 44443 4456667766654 3589998875 443 3467888888653 468998887764 6788899
Q ss_pred HHCCCCeEEe
Q 004001 181 LSKGAVDFLV 190 (780)
Q Consensus 181 l~aGAddyL~ 190 (780)
+.+|++.+..
T Consensus 168 ~~~Ga~~i~~ 177 (196)
T cd00564 168 LAAGADGVAV 177 (196)
T ss_pred HHcCCCEEEE
Confidence 9999998854
No 198
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.33 E-value=75 Score=36.63 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=59.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEcc--CCCCCHHHHHHHHHh--
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLT--NHIDLVLTEV--MPCLSGVALLSKIMS-- 156 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~--~~pDLVLlDi--MP~mdGleLl~~IRs-- 156 (780)
.+.+|.+|+-|+. ..+.|...-+..++.+..+.+..+..+.+.... ..+|+||+|. ....+ -+.+..|+.
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d-~~~l~EL~~l~ 311 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLA-EESVSEISAYT 311 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccC-HHHHHHHHHHh
Confidence 4568999988764 234555555666777777777777655554321 3589999997 22222 233333322
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHH----HCCCCeEEeCCC
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVKPI 193 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al----~aGAddyL~KP~ 193 (780)
....++..++++++..........+ ..+.+.+|.==+
T Consensus 312 ~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKL 352 (407)
T PRK12726 312 DVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKM 352 (407)
T ss_pred hccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcc
Confidence 1123444455666645444444433 356677654333
No 199
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=64.17 E-value=47 Score=40.45 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-C-CCC----CHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 101 HVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-M-P~m----dGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
......|++.||.+.. +.++-..+..|.. -.||.|-+|. + -+. ....+++.|.......++. ++..+-.
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-via~gVe 757 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT-VVAEGVE 757 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-EEEEcCC
Confidence 3344567888998874 5677788888876 6799999996 3 222 2344566554322223454 4567778
Q ss_pred CHHHHHHHHHCCCCe----EEeCCCCHHHHHHHHHH
Q 004001 173 SMGLVFKCLSKGAVD----FLVKPIRKNELKNLWQH 204 (780)
Q Consensus 173 ~~e~~~~al~aGAdd----yL~KP~~~eeL~~~L~~ 204 (780)
+.+....+.+.|++. |+.||...++|...|+.
T Consensus 758 ~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 758 TKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred CHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 888888899999873 57899999999886554
No 200
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.14 E-value=22 Score=38.39 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCC------CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~------~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
.++++++||+. ..++|+|+|+-+. -.....+|.++|++++|.-.+.++|....+..+
T Consensus 76 ~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 46777777632 4678999998653 345688899999999999888888777666655
No 201
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=64.13 E-value=34 Score=38.21 Aligned_cols=113 Identities=10% Similarity=0.163 Sum_probs=72.5
Q ss_pred cEEEEEeCCHHHHHHHHH------HHHhCCCEE-E-EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAA------LLRNCGYEV-T-EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~------lL~~~GyeV-~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP-----~mdGleLl~~ 153 (780)
+|+=|+.|+.....-+.. .|-+.||.| . ++.|...|-++..- .+ +.++=+ -| +..-.+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHH
Confidence 456566655444332222 233459988 3 56666666655543 33 334332 11 2334567777
Q ss_pred HHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
+.+. +.+|||+=.+-...+++..++++|+++.|. |--++-.+..+++...+
T Consensus 244 ~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 244 IVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 7654 569999999999999999999999999975 55677777777766654
No 202
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=64.08 E-value=81 Score=37.07 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=64.4
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC
Q 004001 86 RSLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (780)
Q Consensus 86 ~~lrVLIVDDD----~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------md 146 (780)
.++.||+||.. ......+..+-.++ +..|. .+.+.++|..++.. .+|+|.+-+-|+ ..
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIGPGSICTTRIVAGVGVP 315 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCCCCccccceeecCCCcC
Confidence 45678888854 23344444444444 44433 56788888888763 567776532121 12
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
-++++..+++......+|||+=.+-....++.+|+.+||+.++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 34555555432223468888878888899999999999998875
No 203
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=64.01 E-value=70 Score=34.35 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCC-CHH
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKN 196 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~-~~e 196 (780)
..-.+.+++.. ..||.|++|+ -..++--++...|+.-... .++.|+=....+...+.++++.|+++++.-=+ +.+
T Consensus 21 ~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~-g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~tae 97 (249)
T TIGR03239 21 GNPITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKGS-ASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAE 97 (249)
T ss_pred CCcHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhhc-CCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHH
Confidence 33466677765 5699999999 6666666666666554333 34444445566788899999999999987544 455
Q ss_pred HHHHHHHH
Q 004001 197 ELKNLWQH 204 (780)
Q Consensus 197 eL~~~L~~ 204 (780)
+...+++.
T Consensus 98 ea~~~v~a 105 (249)
T TIGR03239 98 EAERAVAA 105 (249)
T ss_pred HHHHHHHH
Confidence 55555444
No 204
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.68 E-value=59 Score=35.74 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=61.3
Q ss_pred EEEEEeCCHHHH--H--HHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 89 KVLLVENDDSTR--H--VVAALL----RNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIVDDD~~~r--~--~L~~lL----~~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
.|||-|.+-... . .+...+ +..++ .| +.+.+.+++.+.+. ..+|+|++|-|+-.+--+++..++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~---~gaDiImLDn~s~e~l~~av~~~~-- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA---AGVDTIMLDNFSLDDLREGVELVD-- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh---cCCCEEEECCCCHHHHHHHHHHhC--
Confidence 488888776542 1 233333 33453 34 48999999999986 468999999854334444455442
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
...+|..|+.-..+.+.+....|+|-.
T Consensus 236 ----~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 ----GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred ----CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 123788899999999999999998644
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.67 E-value=54 Score=37.44 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=52.7
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH--HHHHHHHHhhcCC
Q 004001 88 LKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdG--leLl~~IRs~~~~ 160 (780)
.+|.+|..|.. -.+.|..+.+..|..+..+.+..+....+... ..+|+||+|. +...+. .+.+..|... ..
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~-~~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGA-DT 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhcc-CC
Confidence 47888877664 34556666667788887777666555555432 4579999997 554443 2344444321 11
Q ss_pred CCccEEEEecCCCHHHH
Q 004001 161 KNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~ 177 (780)
+.-.+++|++....+.+
T Consensus 246 ~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 246 PVQRLLLLNATSHGDTL 262 (374)
T ss_pred CCeEEEEecCccChHHH
Confidence 22347778776655443
No 206
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=63.24 E-value=90 Score=33.92 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCe------EEeCCCCHHHHHHHHHHHHHHhc
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD------FLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAdd------yL~KP~~~eeL~~~L~~llrr~~ 210 (780)
++.+.+|++. -.+|||..-.-.+.+.+.+++..||+. +|.+|.-..++..-|.+++.+..
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 3566777543 358999999999999999999999886 46678777777777777776643
No 207
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=63.17 E-value=65 Score=32.96 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=53.2
Q ss_pred HHHHHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCc-cEEEEec
Q 004001 103 VAALLRNCGYEVT-EA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNL-PVIMMSS 170 (780)
Q Consensus 103 L~~lL~~~GyeV~-~A--~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~~~~~i-PIIvLSa 170 (780)
..+.++..|+.+. .+ .+..+.++.+.. ..|.|+++. -|+.+| ++.+++++.......+ ++|++.+
T Consensus 101 ~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T PRK05581 101 LLQLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG 177 (220)
T ss_pred HHHHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 3444555676654 33 234555554432 367777776 565543 3444455432111112 4555656
Q ss_pred CCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHH
Q 004001 171 LDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQH 204 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~ 204 (780)
--..+.+.++++.|++.++. +.-++.+....+++
T Consensus 178 GI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 178 GINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred CCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 66667888899999997754 43344444444433
No 208
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.77 E-value=65 Score=40.10 Aligned_cols=104 Identities=12% Similarity=0.111 Sum_probs=61.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH--HHHHHHHHhhcCC
Q 004001 88 LKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdG--leLl~~IRs~~~~ 160 (780)
.+|+||.-|.. ..+.|..+-+..|+.+..+.+..+..+.++.. ..+|+||+|. +...+. .+.+..|.. ...
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~-~~~ 293 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCG-VGR 293 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhc-cCC
Confidence 47888877753 23556666666787777777888877777653 4689999997 433332 333444422 223
Q ss_pred CCccEEEEecCCCHHHHH---HHHHC----CCCeEEeCCC
Q 004001 161 KNLPVIMMSSLDSMGLVF---KCLSK----GAVDFLVKPI 193 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~---~al~a----GAddyL~KP~ 193 (780)
+.-.+++|++....+.+. +.|.. +.+++|.--+
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEecc
Confidence 445577777665544333 44432 5677654333
No 209
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=62.41 E-value=5.9 Score=46.74 Aligned_cols=50 Identities=6% Similarity=-0.114 Sum_probs=38.6
Q ss_pred CCChhhhHHHHHHHhhhhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 3 VDGKADKRLQELNHCLQAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 3 ~~g~g~~r~~~L~~~l~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
|+|.|+.... ..+..-+++|++++++.+||.+.+.+.+|.|++|.+.+|.
T Consensus 507 D~G~Gi~~~~-------~~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~ 556 (569)
T PRK10600 507 DNGCGVPENA-------ERSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIP 556 (569)
T ss_pred ECCCCCCccc-------cCCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEec
Confidence 6788775211 1123457899999999999999999999998888777765
No 210
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=62.01 E-value=28 Score=36.28 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=59.9
Q ss_pred CcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHHHHHHHH
Q 004001 27 NAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAAL 106 (780)
Q Consensus 27 ~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~l 106 (780)
..+...|+.+++-...+ ++|-+..+.. +......+ ...+|.-||-++...+..+..
T Consensus 34 g~lL~~l~~~~~~k~vL--EIGt~~GySa-----l~la~~l~-----------------~~g~i~tiE~~~~~~~~A~~~ 89 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVL--EIGTFTGYSA-----LWLAEALP-----------------EDGKITTIEIDPERAEIAREN 89 (205)
T ss_dssp HHHHHHHHHHHT-SEEE--EESTTTSHHH-----HHHHHTST-----------------TTSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEE--EeccccccHH-----HHHHHhhc-----------------ccceEEEecCcHHHHHHHHHH
Confidence 35667777778877666 5554332211 11111110 134899999999999999999
Q ss_pred HHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEcc
Q 004001 107 LRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV 141 (780)
Q Consensus 107 L~~~Gy--eV~-~A~dg~eALe~L~~~~--~~pDLVLlDi 141 (780)
++..|+ .|. ...++.+.|..+.... ..||+||+|.
T Consensus 90 ~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 90 FRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred HHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc
Confidence 999887 344 5678888888776422 3699999998
No 211
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.88 E-value=80 Score=33.16 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC-CCccEEEEecCCCHHHHHHHH
Q 004001 105 ALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR-KNLPVIMMSSLDSMGLVFKCL 181 (780)
Q Consensus 105 ~lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~-~~iPIIvLSa~~~~e~~~~al 181 (780)
..|...+. -|+...+.++++.+++.. ..--|=++.+ |-.-+.++.++.|++.... +++ +|=.-.-.+.+.+.+++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~-~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVELYKDDPEV-LIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCe-EEeeeeCCCHHHHHHHH
Confidence 44555554 344666777777666542 1223445666 7666788888888754211 122 23333345677888999
Q ss_pred HCCCCeEEeCCCCHHHHHHH
Q 004001 182 SKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 182 ~aGAddyL~KP~~~eeL~~~ 201 (780)
++|| +||+-|.--.+|...
T Consensus 86 ~aGA-~FivsP~~~~~v~~~ 104 (213)
T PRK06552 86 LAGA-QFIVSPSFNRETAKI 104 (213)
T ss_pred HcCC-CEEECCCCCHHHHHH
Confidence 9998 577777766666555
No 212
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.62 E-value=43 Score=36.93 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=59.4
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 90 VLLVENDDSTR----HVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDDD~~~r----~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
|||=|.+-... ..+..+-+.... -.+.+.+.+||.+.+. ..+|+|++|-|.-.+--++++.++.. .+++
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~---~gaDiI~LDnm~~e~vk~av~~~~~~--~~~v 247 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA---EGAELVLLDNFPVWQTQEAVQRRDAR--APTV 247 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHHhcc--CCCE
Confidence 66666654333 223333222322 3447899999999986 46899999975422233344444322 2333
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+|..|+.-..+.+.+..+.|+|-+-
T Consensus 248 -~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 248 -LLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred -EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 6778888899999999999987554
No 213
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=61.54 E-value=68 Score=34.62 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=62.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.+++|+.+.+. ...+..++...+. .|.......+..+++.. .|++|+=...+.-|+-+++.+. ..+||
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~~E~~~~~~~EAma-----~g~Pv 297 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSEKESFGLAALEAMA-----CGVPV 297 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCCcCCCccHHHHHHH-----cCCCE
Confidence 45555554432 2344455555543 34444444444444433 4666643322334666777773 35788
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|+. ... ...+.+..|..+|+.+|-+.++|...|..++.
T Consensus 298 I~s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 298 VAS-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred EEe-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 763 322 23456777888999999999999999988764
No 214
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=61.52 E-value=56 Score=35.95 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhhcCCCCccEE--EEecCCCHHHHHHHHHCCCCeEE-----eCCCCHHHHHHHHHHHHHHh
Q 004001 146 SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPII--vLSa~~~~e~~~~al~aGAddyL-----~KP~~~eeL~~~L~~llrr~ 209 (780)
-++++++++++. ..+||| ....-..++.+..++++|++.++ .|.-++.+....+...+..+
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 578999999753 358998 66667789999999999999985 45557777777777766654
No 215
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=61.21 E-value=71 Score=32.99 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=55.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHhc-CCCceEEEEcc--CCCCCHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC--GY-------------EVTEATNGLQAWKILEDL-TNHIDLVLTEV--MPCLSGVA 149 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~--Gy-------------eV~~A~dg~eALe~L~~~-~~~pDLVLlDi--MP~mdGle 149 (780)
-+..||..-+..++++.++|..| |+ .|..+.+.++|++.+++. ...|-+|.++. -|..-.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 36899999999999999999865 32 366899999999998763 45788888888 45555565
Q ss_pred HHHHHHhhcCCCCccEEEE--ecCCCHHHHHHHHHCCCCeEEeCCCCH
Q 004001 150 LLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLVKPIRK 195 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvL--Sa~~~~e~~~~al~aGAddyL~KP~~~ 195 (780)
-++++... .+-|++++ |+..-.+.+ ++ ..||+..|+.-
T Consensus 123 ~lr~~l~~---~~~P~LllFGTGwGL~~ev---~~--~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEE---EDRPVLLLFGTGWGLAPEV---ME--QCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---HHH---HT--T-SEEB--TTT
T ss_pred HHHHHHhc---cCCeEEEEecCCCCCCHHH---HH--hcCeeEccccc
Confidence 55555322 23455555 666544433 33 35899999854
No 216
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.21 E-value=38 Score=37.29 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHVVAALL----RNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL----~~~Gy--eV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.|||-|.+-...-.+...+ +..++ .|. .+.+.+||.+.+. ..+|+|.+|-|.-.+=-++++.|+.. .+
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~---~GaD~I~LDn~~~e~l~~av~~~~~~--~~ 242 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE---YGADIIMLDNMPVDLMQQAVQLIRQQ--NP 242 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHHHhc--CC
Confidence 3777776644432233333 33443 343 7889999999986 46899999974222222334444322 35
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
++| |..++--..+.+.+....|+|.+-
T Consensus 243 ~i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 243 RVK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred CeE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 565 455666678888899999987654
No 217
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=60.96 E-value=1.3e+02 Score=31.14 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=64.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++|+.+.+. ...+..++...+. .|......++..+++.. .|++|+-. . +.-|..+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH-----cCC
Confidence 456666665433 2334444555543 34444333555555543 57777665 4 333667777773 457
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|||+....... ......+..+++.++.+.++|...|..++.
T Consensus 278 Pvi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 278 PVISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CEEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 87754322222 234456668899999999999999999864
No 218
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=60.40 E-value=66 Score=34.34 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=74.1
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc--CCC----CCHHHHHHHH
Q 004001 87 SLKVLLVENDD----STRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV--MPC----LSGVALLSKI 154 (780)
Q Consensus 87 ~lrVLIVDDD~----~~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi--MP~----mdGleLl~~I 154 (780)
.+.+-|.|... .....+-..|+..|+.+. -+..|-..+..|.. .+||+|=+|- .-+ .....+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 34444555332 133445566778898766 68899999999987 7899999995 222 2334566666
Q ss_pred HhhcCCCCccEEEEecCCCHHHHHHHHHCCCCe----EEeCCCCHHHHHHHHHH
Q 004001 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD----FLVKPIRKNELKNLWQH 204 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~~~~e~~~~al~aGAdd----yL~KP~~~eeL~~~L~~ 204 (780)
-.....-.+.|| .-+-...+....+.+.|++. |+.||...+++...+..
T Consensus 199 v~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 199 VALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred HHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 433222344444 44556677777888999873 47899999777665543
No 219
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=60.38 E-value=28 Score=38.50 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=58.3
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 90 VLLVENDDSTRHVVAALLR----NCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~----~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
|||-|.+-...-.+...++ ... .-.+.+.+.++|.+.++. .+|+|++|-|.-.+--++++.++ .+
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~e~~~~av~~~~-----~~- 252 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTTEQMREAVKRTN-----GR- 252 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCChHHHHHHHHhhc-----CC-
Confidence 6666666444433444442 222 234488999999999974 58999999854323333444331 22
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.+|..|+.-..+.+.+..+.|+|-+.
T Consensus 253 ~~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 253 ALLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 35777888888999999999986553
No 220
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=60.24 E-value=63 Score=41.00 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=96.0
Q ss_pred CCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHHHH
Q 004001 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHV 102 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~ 102 (780)
.+-+++||++|+++|||.|.++|.+|.|++|.+.+|+...... . ... .....+.+|+++.+++.....
T Consensus 631 tGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~---~---~~~------~~~~~g~~i~l~~~~~~~~~~ 698 (924)
T PRK10841 631 TGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYP---Q---KKG------VEGLQGKRCWLAVRNASLEQF 698 (924)
T ss_pred eehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCccccc---c---ccc------CcccCCCEEEEEcCCHHHHHH
Confidence 4456999999999999999999999999999888876421110 0 000 012345689999999999999
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHH
Q 004001 103 VAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 181 (780)
Q Consensus 103 L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al 181 (780)
+..+|+.+|+.|..+.... ....|++|+|. ........ .. +.+...... ...
T Consensus 699 l~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~~~--~~------------~~~~~~~~~----~~~ 751 (924)
T PRK10841 699 LETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQGR--AV------------ITFCRRHIG----IPL 751 (924)
T ss_pred HHHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccchh--hh------------hhhhhcccc----Chh
Confidence 9999999999988665211 13468999987 43211110 11 111110000 011
Q ss_pred HCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 182 SKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 182 ~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
......++.+|..+.++...+..++..
T Consensus 752 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ 778 (924)
T PRK10841 752 EIAPGEWVHSTATPHELPALLARIYRI 778 (924)
T ss_pred hcccCceeeccCChHHHHHHHHHHhhc
Confidence 122345788999999999888887653
No 221
>PRK05670 anthranilate synthase component II; Provisional
Probab=59.97 E-value=21 Score=36.11 Aligned_cols=89 Identities=19% Similarity=0.118 Sum_probs=51.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
|||||-...+-..+.++|++.|+++..........+.+.. ..||.||+-- +.-.+--.+.+.|+. ....+||+-
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~--~~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVLSPGPGTPAEAGISLELIRE--FAGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEEcCCCCChHHcchHHHHHHH--hcCCCCEEE
Confidence 8999999999999999999999988766543222223333 3488777621 111111122333432 234589887
Q ss_pred EecCCCHHHHHHHHHCCCC
Q 004001 168 MSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAd 186 (780)
+.- ....-+...|+.
T Consensus 78 ICl----G~Qlla~alGg~ 92 (189)
T PRK05670 78 VCL----GHQAIGEAFGGK 92 (189)
T ss_pred ECH----HHHHHHHHhCCE
Confidence 753 233334445653
No 222
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=59.95 E-value=26 Score=36.42 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=28.8
Q ss_pred EEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHH
Q 004001 138 LTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200 (780)
Q Consensus 138 LlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~ 200 (780)
++.+ |-.-+.+++++.|++.. +++ +|-.-.--+.+.+.+++++||+ |++-|.--.++..
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~ 95 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIE 95 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 3445 55555666676665432 443 2333334456667777777764 4444554444443
No 223
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=59.68 E-value=36 Score=33.93 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=51.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE--------------EECCHHHHHHHHHhc--CCCceEEEEcc--CCCCCH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT--------------EATNGLQAWKILEDL--TNHIDLVLTEV--MPCLSG 147 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~--------------~A~dg~eALe~L~~~--~~~pDLVLlDi--MP~mdG 147 (780)
+.+||||+..-..+.+.+.+.|+...+.+. .+-+-......+... ...||+||+|- .-+-..
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~s 111 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTS 111 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHH
Confidence 678999999999999999999987654332 111223334434321 24699999996 444444
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCC
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
+.+.-.|+.........+|+||+..
T Consensus 112 IA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 112 IAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HhhheeHHHhhhccCeeEEEEeCCC
Confidence 5555555544434456799999854
No 224
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.61 E-value=86 Score=34.16 Aligned_cols=103 Identities=10% Similarity=0.155 Sum_probs=55.4
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH---HHhcCCCceEEEEcc--CCCCCHHHHHHHHHhh-
Q 004001 87 SLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKI---LEDLTNHIDLVLTEV--MPCLSGVALLSKIMSH- 157 (780)
Q Consensus 87 ~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~---L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~- 157 (780)
..+|.+|+-|.. ....++...+..++.+..+.+..+..+. +.. ...+|+||+|. ....+ -+++++|++.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~D~ViIDt~Gr~~~~-~~~l~el~~~~ 180 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA-SETVEEMIETM 180 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh-cCCCCEEEEECCCCCcCC-HHHHHHHHHHH
Confidence 457888877654 3444555556678888877776544333 332 13689999997 22112 2233333221
Q ss_pred -cCCCCccEEEEecCCCHHHH----HHHHHCCCCeEEeC
Q 004001 158 -KTRKNLPVIMMSSLDSMGLV----FKCLSKGAVDFLVK 191 (780)
Q Consensus 158 -~~~~~iPIIvLSa~~~~e~~----~~al~aGAddyL~K 191 (780)
...+...++++++....... ...-..+.+.+|.-
T Consensus 181 ~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~T 219 (270)
T PRK06731 181 GQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 219 (270)
T ss_pred hhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEE
Confidence 12233446677765443222 22234677776543
No 225
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=59.60 E-value=41 Score=37.05 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhhcCCCCccEE--EEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHHHhc
Q 004001 146 SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPII--vLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llrr~~ 210 (780)
-++++++++++. ..+||| ....-...+.+..++++|++.+++ |.-++.+....+...+..+.
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478899999753 358998 666666899999999999999864 55578888877777776654
No 226
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=59.42 E-value=86 Score=30.06 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=70.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATN--GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~d--g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
..++++|+.+.... ..+..+....++ .+..... ..+..+++.. .|++|+=...+.-|..+++.+. .
T Consensus 46 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~e~~~~~~~Ea~~-----~ 115 (172)
T PF00534_consen 46 PNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRNEGFGLSLLEAMA-----C 115 (172)
T ss_dssp TTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSSBSS-HHHHHHHH-----T
T ss_pred CCeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccccccccccccccc-----c
Confidence 45678888744333 335555555554 3444433 3466777765 5777775533555677888773 3
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+|||+ +.. ....+.+..+..+++..+.+.++|...|..++...
T Consensus 116 g~pvI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 116 GCPVIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp T-EEEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccceee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 466663 432 23456778888999999999999999999988653
No 227
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=59.35 E-value=91 Score=33.56 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
.+++++.||+. ..++|+++|+-+.. ...+.++.++|++++|.-....+++...+..+
T Consensus 74 ~~~~v~~ir~~--~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 74 CFELLKKVRQK--HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 46677777643 24689888887665 56788899999999999888877776655554
No 228
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=59.28 E-value=65 Score=34.57 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=71.3
Q ss_pred ccEEEEEeCCHHH------HHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH-----HHHH
Q 004001 87 SLKVLLVENDDST------RHVVAALLRNCGYEVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-----ALLS 152 (780)
Q Consensus 87 ~lrVLIVDDD~~~------r~~L~~lL~~~GyeV~~A--~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGl-----eLl~ 152 (780)
=+|+=|+-|+... .-.-.++|-+.||.|... .|.--|- .|++. . -..||-+ -|-.+|. ..++
T Consensus 100 wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~ar-rLee~--G-caavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 100 WIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLAR-RLEEA--G-CAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred eEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHH-HHHhc--C-ceEeccccccccCCcCcCCHHHHH
Confidence 3566666654332 223445677889999843 3444443 34431 2 2456666 5655543 5677
Q ss_pred HHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC-----CCCHHHHHHHHHHHH
Q 004001 153 KIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK-----PIRKNELKNLWQHVW 206 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K-----P~~~eeL~~~L~~ll 206 (780)
.|+++ .++|||+=.+-........+++.|+|.+|.- --++-.+..+.....
T Consensus 176 iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 176 IIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred HHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 77654 3899999999999999999999999999863 234555555554443
No 229
>PRK15320 transcriptional activator SprB; Provisional
Probab=59.18 E-value=27 Score=36.53 Aligned_cols=104 Identities=15% Similarity=0.102 Sum_probs=70.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 89 KVLLVENDDSTRHVVAALLRNC--GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~--GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.|+|-.|+=.+.-.+..++++. |..|.+|......|..+.. .||.+|+=. -|..- +=+...|++. .++-||
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh-~~lf~~l~~~--l~~~~v 76 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEH-VYLFHALLTR--LQNRKV 76 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhH-HHHHHHHHHH--cCCCce
Confidence 5888889988888999999876 6788888888888888874 577766644 45543 3344555432 467889
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L 202 (780)
++++..--..+..-..-.|+.+|+.| +||..+|
T Consensus 77 ~vv~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~ 109 (251)
T PRK15320 77 LVVADRLYYIDRCVLQYFGVMDYVLK----DELSCAI 109 (251)
T ss_pred EEEecceeehhhhhhhhhcchhHHHH----HHHHHHh
Confidence 99987654433333345677778765 4555444
No 230
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.10 E-value=85 Score=37.36 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=59.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCC-CHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCL-SGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~m-dGleLl~~IRs~~~~~~i 163 (780)
.+..|++||.|+...+.+ ++.|+.++..+ .-.+.|+.+.- .+.|.|++-. ++. +-..++..+|+. .+++
T Consensus 439 ~g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~-~~~~~~~~iv~~~~~~--~~~~ 509 (558)
T PRK10669 439 AGIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHL--DCARWLLLTI-PNGYEAGEIVASAREK--RPDI 509 (558)
T ss_pred CCCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEc-CChHHHHHHHHHHHHH--CCCC
Confidence 345678888777644333 34577766543 22345554432 4577666543 221 223355556544 4677
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
+||+-..+ .+......++|+|..+ -| ..++...+.+.+
T Consensus 510 ~iiar~~~--~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l 547 (558)
T PRK10669 510 EIIARAHY--DDEVAYITERGANQVV-MG--EREIARTMLELL 547 (558)
T ss_pred eEEEEECC--HHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHh
Confidence 88877653 4556667789998666 33 344444444443
No 231
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=58.99 E-value=1.3e+02 Score=32.73 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeE------EeCCCCHHHHHHHHHHHHHHh
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF------LVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddy------L~KP~~~eeL~~~L~~llrr~ 209 (780)
++++.+|++. -++|||....-.+.+.+.+++.+||+.+ |..|.-+.++..-+.+++.+.
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 223 LRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 5778888653 2699999999999999999999998654 335666666666666666654
No 232
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=58.72 E-value=1.2e+02 Score=36.01 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=25.7
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
..+|||.=-+-....++.+|+.+||+.++.=
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3588887777788899999999999988753
No 233
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=58.44 E-value=30 Score=36.08 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=47.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHH--HHHHHHHhhcCCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGV--ALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdGl--eLl~~IRs~~~~~~ 162 (780)
+||||+|........+...|+..|+++..+......+..+......||.||+-= .|..++. .+++++. ...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~----~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA----AAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH----hCC
Confidence 489999999888888999999999988765543221111111013588777632 2332332 2444432 246
Q ss_pred ccEEEEec
Q 004001 163 LPVIMMSS 170 (780)
Q Consensus 163 iPIIvLSa 170 (780)
+||+-+.-
T Consensus 77 ~PiLGIC~ 84 (214)
T PRK07765 77 TPLLGVCL 84 (214)
T ss_pred CCEEEEcc
Confidence 89887763
No 234
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=57.77 E-value=1.4e+02 Score=33.14 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=68.5
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 88 LKVLLVEN---DD-STRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDD---D~-~~r~~L~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
++++||.+ +. .....+..+.+..+. .|.... +.++..+++.. .|++++-...+.-|+-+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~~E~~g~~~lEAma---- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSYNESFGLVAMEAQA---- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCCCCCcChHHHHHHH----
Confidence 66777763 11 344556666666664 354433 34566666654 5777664433344677787773
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+..... ..+.+..|..+++..|-+.++|...|.+++.
T Consensus 325 -~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 325 -CGTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred -cCCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 357887644322 2345567888999999999999999998875
No 235
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.70 E-value=1.1e+02 Score=32.41 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=43.6
Q ss_pred HHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc--CCCCccEEEEecCCCHHHHHHHH
Q 004001 106 LLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNLPVIMMSSLDSMGLVFKCL 181 (780)
Q Consensus 106 lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~--~~~~iPIIvLSa~~~~e~~~~al 181 (780)
.|.+.+. -|+...+.++|++.++.. ..--|=++.+ |-.-+.++.++.|++.. ..+++ +|=.-.--+.+.+..++
T Consensus 11 ~l~~~~vi~Vvr~~~~~~a~~~~~al-~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~ 88 (222)
T PRK07114 11 AMKATGMVPVFYHADVEVAKKVIKAC-YDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYI 88 (222)
T ss_pred HHHhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHH
Confidence 3334443 334555666665554431 1112234445 54455666666664221 12222 22222334566667777
Q ss_pred HCCCCeEEeCCCCHHHHHHH
Q 004001 182 SKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 182 ~aGAddyL~KP~~~eeL~~~ 201 (780)
++|| +||+-|.--.+|.+.
T Consensus 89 ~aGA-~FiVsP~~~~~v~~~ 107 (222)
T PRK07114 89 QLGA-NFIVTPLFNPDIAKV 107 (222)
T ss_pred HcCC-CEEECCCCCHHHHHH
Confidence 7776 455556555554443
No 236
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=57.40 E-value=86 Score=34.01 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=54.0
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHH
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NGL----QAWKILEDLTNHIDLVLTEV--MPCLSGVALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~---dg~----eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~ 153 (780)
.+.+|+||+-|.. ..+.+..+.+..|..+.... +.. +++..+.. ..+|+||+|. ....+ ..++.+
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~G~~~~d-~~~~~e 175 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTAGRLQNK-VNLMDE 175 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCCCCCcch-HHHHHH
Confidence 4579999997752 23455556666776665432 222 33333333 5699999997 22112 223332
Q ss_pred HH---hh-----cCCCCccEEEEecCCCHHHHHHH---H-HCCCCeEEe
Q 004001 154 IM---SH-----KTRKNLPVIMMSSLDSMGLVFKC---L-SKGAVDFLV 190 (780)
Q Consensus 154 IR---s~-----~~~~~iPIIvLSa~~~~e~~~~a---l-~aGAddyL~ 190 (780)
|+ +. ...++-.++++.+....+....+ . ..+.+.+|.
T Consensus 176 l~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 176 LKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 22 11 11245557777776554433332 2 256666654
No 237
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.04 E-value=1.4e+02 Score=34.18 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=66.5
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHH---HHHHHHhh
Q 004001 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVA---LLSKIMSH 157 (780)
Q Consensus 86 ~~lrVLIVDDD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGle---Ll~~IRs~ 157 (780)
.+.+|+||.-|..- ...|..+.+..|+.+..+.+..+....+... ..+|+||+|. ....+-.. +.+.+...
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 35689999887632 2334454555678787788777766666543 5799999997 33334332 22233211
Q ss_pred cCCCCccEEEEecCCCHHHHHHHH----HCCCCeEEeCCCC-HHHHHHHHHHHH
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVKPIR-KNELKNLWQHVW 206 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al----~aGAddyL~KP~~-~eeL~~~L~~ll 206 (780)
. .+.-.+++|++......+.+.+ ..|.+.+|.--++ ...+-.+|.-+.
T Consensus 284 ~-~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 284 G-RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred C-CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHHH
Confidence 1 1223578888877655554443 3467776543333 233333444333
No 238
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=57.01 E-value=1.7e+02 Score=31.18 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=65.7
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004001 87 SLKVLLVENDDS---TRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 87 ~lrVLIVDDD~~---~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~ 160 (780)
.++++|+.+.+. ....+...+...+. .|......++..+++.. .|++|+=. .++.-|.-+++.+.
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a----- 286 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA----- 286 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh-----
Confidence 456777765432 33344445555544 35555444555556643 57766543 34555677888773
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
..+|||+. .... ..+.+..+..+++..|-+.++|...|..++
T Consensus 287 ~G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 287 MGRPVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred cCCCEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 45788753 3322 245566677899999999999999996554
No 239
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=56.83 E-value=84 Score=34.58 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhcCCCCccEE--EEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHHHhc
Q 004001 146 SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPII--vLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llrr~~ 210 (780)
-+++++++|++. ..+||| ....-...+.+..+++.||+.+++ +.-++.+....+...+.++.
T Consensus 181 ~d~elLk~l~~~---~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~ 249 (283)
T cd04727 181 APYELVKETAKL---GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYD 249 (283)
T ss_pred CCHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcC
Confidence 378889998653 248997 666666899999999999999864 44467777777777776653
No 240
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=56.64 E-value=52 Score=35.66 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHH----HHHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHV----VAALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~----L~~lL~~~G--yeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.|||-|++-..... +..+-+..+ ..+ +.+.+.+|+++.+.. .+|+|.+|-|.-..--++++.++.. +
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e~l~~~v~~i~~~---~ 226 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPEELKEAVKLLKGL---P 226 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhccC---C
Confidence 47777776554422 222222334 233 478899999998863 5899999983221111233333221 4
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++|| +.++--..+.+.+....|++.+.+
T Consensus 227 ~i~i-~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 227 RVLL-EASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CeEE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 5664 456666788899999999987753
No 241
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.58 E-value=61 Score=35.83 Aligned_cols=91 Identities=18% Similarity=0.035 Sum_probs=59.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hC-C-CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 89 KVLLVENDDSTRHVVAALLR---NC-G-YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~---~~-G-yeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
.|||=|.+-...-.+...++ +. . ..| +.+.+.+++.+.+.. .+|+|++|-|+-.+--++++.++ .
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe~l~~av~~~~------~ 248 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLDMMREAVRVTA------G 248 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHhhc------C
Confidence 47777777655433333332 22 1 233 378999999999974 68999999854333334444442 1
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
-.+|-.|+.-..+.+.+....|+|-.
T Consensus 249 ~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 249 RAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 24677888889999999999998644
No 242
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.54 E-value=63 Score=35.66 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=61.3
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHVVAALLR----NCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~----~~Gy--eV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
-|||-|.+-...-.+...++ ...+ .|. .+.+.+++.+.+.. .+|+|++|-|.-.+--++++.++.
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe~l~~av~~~~~----- 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLEQIEQAITLIAG----- 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhcC-----
Confidence 47888877665544444443 3342 343 78999999999974 689999998543333444444421
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
-.+|..|+.-..+.+......|+|-.
T Consensus 241 -~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 241 -RSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred -ceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 24677888889999999999998644
No 243
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=56.49 E-value=1.5e+02 Score=30.54 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=63.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
.++++|+.+.. ....+..+++..+. .|.. .-+.++..+++.. .|++|+-...+.-|..+++.+. ..
T Consensus 230 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~~~~~~~~~Ea~~-----~g 299 (374)
T cd03801 230 DVRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLYEGFGLVLLEAMA-----AG 299 (374)
T ss_pred CeEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchhccccchHHHHHH-----cC
Confidence 35666666433 34444444433332 2332 3334666666654 5777765422344566777763 35
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+|||+..... ..+.+..+-.+++..+.+.++|...|..++.
T Consensus 300 ~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 300 LPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred CcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 7877543322 2344555778899999999999999998764
No 244
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=55.76 E-value=67 Score=41.97 Aligned_cols=99 Identities=18% Similarity=0.279 Sum_probs=69.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-C-CCCCH-HHHHHHHHhh
Q 004001 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-M-PCLSG-VALLSKIMSH 157 (780)
Q Consensus 88 lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi-M-P~mdG-leLl~~IRs~ 157 (780)
-+|||. |-+..=..++.-+|+..||+|+... ..++.++.+++ ..+|+|-+-. | +.+.. .++++.|++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 477777 6777777888889999999998533 46778888877 7899999887 5 34443 4678888765
Q ss_pred cCCCCccEEEEecCCCHHHHHHH---HHCCCCeEEe
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKC---LSKGAVDFLV 190 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~a---l~aGAddyL~ 190 (780)
...+||++--+..+......- ...|++.|-.
T Consensus 811 --g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 811 --GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred --CCCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 356887776665555444321 2338887765
No 245
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.21 E-value=71 Score=38.57 Aligned_cols=96 Identities=14% Similarity=0.217 Sum_probs=57.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+..+++||.|+...+.+ ++.|+.++..+ .-.+.|+.+.- .+.|+|++-.-.+.+-..++..+|+. .++++
T Consensus 422 ~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~~~n~~i~~~~r~~--~p~~~ 493 (601)
T PRK03659 422 NKMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEPEDTMKIVELCQQH--FPHLH 493 (601)
T ss_pred CCCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCHHHHHHHHHHHHHH--CCCCe
Confidence 455678888877654433 34577766543 22334444432 45666665431123345666777653 57888
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
||+-+. +.+...+..++||+.++.-
T Consensus 494 IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 494 ILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred EEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 876654 4566778889999877643
No 246
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.15 E-value=1.1e+02 Score=33.63 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=58.8
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------------HHhcCCCceEEEEccCCCCCHHH
Q 004001 88 LKVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------------LEDLTNHIDLVLTEVMPCLSGVA 149 (780)
Q Consensus 88 lrVLIVD--DD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~-------------L~~~~~~pDLVLlDiMP~mdGle 149 (780)
|+|.||- +.+.. ...+...|++.|+++.......+.+.. .......+|+||+ -+.||.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---lGGDGT- 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS---IGGDGT- 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE---ECCcHH-
Confidence 3566662 22333 345566677889988865543322210 0111124676665 366773
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|+..|... ...+||+-+-. |=.+||. .+.++++...|.++++.
T Consensus 77 ~L~aa~~~~-~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 77 FLRTATYVG-NSNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred HHHHHHHhc-CCCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 444444322 34689887643 4457776 68899999999998864
No 247
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=55.09 E-value=1.6e+02 Score=31.84 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=48.4
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVENDD----STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVDDD~----~~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.||.++. .....+...|++.|++|+. ..+....+..|+. ..+|+||+.. ...+...+++.+++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~-~~~~~~~~~~~~~~ 218 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAG-HFPDAVLLVRQMKE 218 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECC-cchhHHHHHHHHHH
Confidence 3555444443 2345667777888988762 1344556666665 5789998765 33467778888875
Q ss_pred hcCCCCccEEEEecC
Q 004001 157 HKTRKNLPVIMMSSL 171 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~ 171 (780)
.. ...++++++..
T Consensus 219 ~g--~~~~~~~~~~~ 231 (345)
T cd06338 219 LG--YNPKALYMTVG 231 (345)
T ss_pred cC--CCCCEEEEecC
Confidence 43 34566655443
No 248
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=55.07 E-value=66 Score=32.70 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc--CCCC----CHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MPCL----SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi--MP~m----dGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
.....|+..||.+.. +..+..-+..+.. ..||.|-+|. +... ....+++.|........+. |+.++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 445667788998774 4556666777776 6799999996 3222 1334555554322223344 45677788
Q ss_pred HHHHHHHHHCCCC---e-EEeCCCCH
Q 004001 174 MGLVFKCLSKGAV---D-FLVKPIRK 195 (780)
Q Consensus 174 ~e~~~~al~aGAd---d-yL~KP~~~ 195 (780)
.+....+.+.|++ + |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 8888899999986 3 46677654
No 249
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=54.85 E-value=21 Score=38.52 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=39.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV-MPC 144 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-------dg~eALe~L~~~~~~pDLVLlDi-MP~ 144 (780)
|||||+..+-.+...|...|...|++|+... +.++..+++.. ..||+||.-. +..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEeccceeec
Confidence 6899999999999999999999999888663 55566666665 5799988765 543
No 250
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.49 E-value=79 Score=34.47 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=58.0
Q ss_pred cEEEEEeC--C---HHHHHHHHHHHHhCCCEEEEECCHHHHHH--------HHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVEN--D---DSTRHVVAALLRNCGYEVTEATNGLQAWK--------ILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDD--D---~~~r~~L~~lL~~~GyeV~~A~dg~eALe--------~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
|||.||-. . ......+..+|+..|+++.......+.+. .+.. ..+|+||+ -+.||. +++.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~---iGGDGT-lL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA---IGGDGT-ILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE---EeCcHH-HHHHH
Confidence 46777722 2 22345566677788998886543222211 1111 24676664 366773 44444
Q ss_pred HhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+ . ....+||+.+.. |=.+||. .+.++++...|.++++.
T Consensus 75 ~-~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 75 H-K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred H-h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 4 2 234789888764 2246665 67889999999888754
No 251
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.33 E-value=1.9e+02 Score=33.54 Aligned_cols=102 Identities=12% Similarity=0.216 Sum_probs=63.1
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCCC-------C-----
Q 004001 86 RSLKVLLVEN----DDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCL-------S----- 146 (780)
Q Consensus 86 ~~lrVLIVDD----D~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~m-------d----- 146 (780)
.+..|++||- ...+.+.++.+=+.+ +..|+ -+.+.++|..+++. .+|.|.+-+-|+- +
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 3556888774 223333444433333 33443 47888899888863 5788875542321 1
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
-+.++..+++......+|||+=..-....++.+|+.+||+.++.
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 23333333322112458999888888999999999999999875
No 252
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=54.33 E-value=38 Score=33.25 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=44.7
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004001 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT----NGLQAWKILEDLTNHIDLVLTEV-MPC 144 (780)
Q Consensus 83 ~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~----dg~eALe~L~~~~~~pDLVLlDi-MP~ 144 (780)
.++.+.+|+|+.......+-|..+|.+.|+.|..+. +.++ .++ .-|||+.-. -+.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~---~v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS---KVH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH---HHh----hCCEEEEecCCCC
Confidence 356788999999999999999999999999999887 4443 333 369999988 553
No 253
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=53.78 E-value=2e+02 Score=30.79 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=51.6
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 89 KVLLV-ENDDS---TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIV-DDD~~---~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
+|.|| +|++. ....++..|++.|.+|+. ..+....+..++. ..||+||+-. ...++..+++.+++.
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~-~~~~~~~~~~~~~~~ 215 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIG-YPETGSGILRSAYEQ 215 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEec-ccchHHHHHHHHHHc
Confidence 44443 44443 344567778888988763 2366677788876 6799998754 233788889988765
Q ss_pred cCCCCccEEEEecCCCHH
Q 004001 158 KTRKNLPVIMMSSLDSMG 175 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e 175 (780)
. ...++|.........
T Consensus 216 G--~~~~~~~~~~~~~~~ 231 (312)
T cd06346 216 G--LFDKFLLTDGMKSDS 231 (312)
T ss_pred C--CCCceEeeccccChH
Confidence 4 355666554444433
No 254
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=53.35 E-value=50 Score=33.43 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcC--CCCccEEE
Q 004001 101 HVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVIM 167 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~~--~~~iPIIv 167 (780)
......++..|..+.. ..+..+.++.+.. .+|.|+++. -|+..| ++.++++++... .+.+||++
T Consensus 94 ~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v 170 (210)
T TIGR01163 94 HRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV 170 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 3344566666765443 3345566665543 367777766 554443 344555543211 12356655
Q ss_pred EecCCCHHHHHHHHHCCCCeEEe
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~ 190 (780)
.-+- ..+.+.++++.|++.++.
T Consensus 171 ~GGI-~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 171 DGGV-NDDNARELAEAGADILVA 192 (210)
T ss_pred ECCc-CHHHHHHHHHcCCCEEEE
Confidence 5444 567888989999998865
No 255
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=53.32 E-value=94 Score=30.09 Aligned_cols=56 Identities=21% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCceEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 132 NHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 132 ~~pDLVLlDi-MP~mdG-------leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
...|.|.++. .+...+ ...+..++. ...+||++..+-...+.+.++++.||+.+..
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4578888887 654332 233444432 3568999988888778888999999988764
No 256
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.27 E-value=37 Score=37.60 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=47.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHH
Q 004001 89 KVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL 151 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~--Gy---eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl 151 (780)
.|+++|-|..+.+.=...|... || +|. ...||...++.+.+ ..+|+||+|. -|.+.+..+.
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCccchHHHHH
Confidence 5889999988888888888754 55 444 55699999888865 7899999999 7877776543
No 257
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.15 E-value=36 Score=38.10 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+++.++++. ...+|+|.+|. .+... -.+++++||+. ++++|||+= .-.+.+....++++|++..+
T Consensus 100 ~~~~~Lv~a-g~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAE-GLTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhc-CCCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 445555542 11359999999 86544 46789999753 466776652 23367788999999998865
No 258
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=53.07 E-value=27 Score=35.57 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=51.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCccE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNG-LQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg-~eALe~L~~~~~~pDLVLlDi--M-P~mdGleLl~~IRs~~~~~~iPI 165 (780)
|||||....+-..+..+|++.|+.+..+... .+ +..+.. ..||.||+-- | |..++. ..+.|+. ....+||
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~--~~~~~iilsgGp~~~~~~~~-~~~~i~~--~~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEID-IDGIEA--LNPTHLVISPGPCTPNEAGI-SLQAIEH--FAGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCC-HHHHhh--CCCCEEEEeCCCCChHHCcc-hHHHHHH--hcCCCCE
Confidence 8999999999999999999999988766533 22 222333 3577666543 2 222222 2233332 2356898
Q ss_pred EEEecCCCHHHHHHHHHCCC
Q 004001 166 IMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGA 185 (780)
+-+.- ....-+..+|+
T Consensus 76 LGICl----G~Qlia~a~Gg 91 (193)
T PRK08857 76 LGVCL----GHQAIAQVFGG 91 (193)
T ss_pred EEEcH----HHHHHHHHhCC
Confidence 87753 23334445554
No 259
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=53.02 E-value=1.5e+02 Score=33.65 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=69.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEcc-C-C--CCCH--HHHHHHHHh
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEV-M-P--CLSG--VALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDi-M-P--~mdG--leLl~~IRs 156 (780)
.++++||.+-+. +..+..++++.|. .|.... +.++..+++.. .|++|+=. . + +.+| .-+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 457778877654 4567777777665 244332 44566677754 57777543 2 1 1244 45677762
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||.. ... ...+.+..|..+||..|-+.++|...|..++.
T Consensus 327 ----~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 45788753 332 23456778889999999999999999998876
No 260
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=52.64 E-value=1.1e+02 Score=34.09 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHH
Q 004001 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~ 199 (780)
.++..+++.. .|+.++=..+..-|+-+++.+. ..+|||. |... ...+.+..|..++|..|.++++|.
T Consensus 291 ~~~~~~~l~~----adv~v~~s~~e~~~~~llEAmA-----~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la 357 (396)
T cd03818 291 YDQYLALLQV----SDVHVYLTYPFVLSWSLLEAMA-----CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALA 357 (396)
T ss_pred HHHHHHHHHh----CcEEEEcCcccccchHHHHHHH-----CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHH
Confidence 4566666654 4666642256655677787773 4578875 3332 234556778899999999999999
Q ss_pred HHHHHHHH
Q 004001 200 NLWQHVWR 207 (780)
Q Consensus 200 ~~L~~llr 207 (780)
..|..++.
T Consensus 358 ~~i~~ll~ 365 (396)
T cd03818 358 AAVIELLD 365 (396)
T ss_pred HHHHHHHh
Confidence 99999875
No 261
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=52.55 E-value=68 Score=36.92 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=61.3
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEcc--CCCCCHH--HHHHHHHhhcC
Q 004001 87 SLKVLLVEN-DDSTRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV--MPCLSGV--ALLSKIMSHKT 159 (780)
Q Consensus 87 ~lrVLIVDD-D~~~r~~L~~lL~~~GyeV~~A~--dg~eALe~L~~~~~~pDLVLlDi--MP~mdGl--eLl~~IRs~~~ 159 (780)
+-+||+.+| -.-.+..+..+|.++|++|..+. +..+.++.+.. ...++|+++. -|-|.-. ..+.+|-..
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~-- 177 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKA-- 177 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHh--
Confidence 347888887 35577889999999999999776 44455656643 4689999997 4655433 333333211
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.. .++++=..-......+.++.|||-++
T Consensus 178 -~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 178 -YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred -cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 12 34444333333466788899987665
No 262
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=52.46 E-value=1.8e+02 Score=34.58 Aligned_cols=98 Identities=15% Similarity=0.279 Sum_probs=63.9
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEcc---------------CCC
Q 004001 87 SLKVLLVENDD----STRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEV---------------MPC 144 (780)
Q Consensus 87 ~lrVLIVDDD~----~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi---------------MP~ 144 (780)
+.-|++||--. .+.+.++.+=+.+ +..|+ -+.+.++|..+++ ..+|.|.+-+ .|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~---aGaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ---AGVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccCccccccCCCc
Confidence 45677777432 2223444443334 34554 3778888888776 3578886531 233
Q ss_pred CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 145 mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..-+..+.++.+. ..+|||+=.+-.....+.+|+.+||+.++.
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3445556666432 358999999999999999999999998875
No 263
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=52.15 E-value=91 Score=35.86 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=66.1
Q ss_pred eCCHHHHHHHHHHHHhCCCE----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEcc-CCCC
Q 004001 94 ENDDSTRHVVAALLRNCGYE----VTEAT-----------------------NGLQAWKILEDLTNHIDLVLTEV-MPCL 145 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~Gye----V~~A~-----------------------dg~eALe~L~~~~~~pDLVLlDi-MP~m 145 (780)
+++....+++++.++..||+ |..+- +.+++++++......++|+.+.- ++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777788888989877653 33222 33788887765323578888887 7765
Q ss_pred CHHHHHHHHHhhcCCCCccEEEEecC---CCHHHHHHHHHCCC-CeEEeCCCCHHHHHHHHH
Q 004001 146 SGVALLSKIMSHKTRKNLPVIMMSSL---DSMGLVFKCLSKGA-VDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPIIvLSa~---~~~e~~~~al~aGA-ddyL~KP~~~eeL~~~L~ 203 (780)
| ++-.++|++.- ...+|| +... .......++++.++ +.++.||-..--|..+++
T Consensus 290 D-~eg~~~L~~~~-g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 5 55566675431 123444 3333 24677788888776 556679987555554444
No 264
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.88 E-value=51 Score=36.22 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=60.5
Q ss_pred EEEEeCCHHHH-------HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 90 VLLVENDDSTR-------HVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 90 VLIVDDD~~~r-------~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
|||-|.+-... ..+..+=+..+. -.+.+.+.++|.+.++. .+|+|++|-|+-.+--++++.+++. .
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LDn~~~e~l~~av~~~~~~--~ 234 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLDKFSPQQATEIAQIAPSL--A 234 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhhcc--C
Confidence 66666665433 233333333332 33478899999999974 6899999985443444455555321 2
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+. .+|-.|+.-..+.+.+....|+|-+.
T Consensus 235 ~~-~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 235 PH-CTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CC-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 33 36778888899999999999987654
No 265
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.63 E-value=86 Score=35.41 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=42.9
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDS-----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~-----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-|+|||-|... ....+...|+..|+++..+. +..++++.+++ ..+|+||- +-+.+-+++.+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~Iia--vGGGS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE--EGCDFVVG--LGGGSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH--cCCCEEEE--eCCccHHHHHHH
Confidence 48999988654 33567788888887766442 34567777776 67898874 456566666665
Q ss_pred H
Q 004001 154 I 154 (780)
Q Consensus 154 I 154 (780)
+
T Consensus 102 i 102 (380)
T cd08185 102 I 102 (380)
T ss_pred H
Confidence 5
No 266
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=51.55 E-value=1.5e+02 Score=32.95 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=56.0
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C---CC--C-CHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M---PC--L-SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 103 L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M---P~--m-dGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
+...|+..|..|. .+.+.++|...++. .+|+|++-= - .+ . +-+.|+..++.. .++|||+--+-.+
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~d 201 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--S
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCC
Confidence 4455778888776 89999999887764 589888752 1 12 2 247788888654 3499999888889
Q ss_pred HHHHHHHHHCCCCeEEe
Q 004001 174 MGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~ 190 (780)
...+..++.+||+++..
T Consensus 202 g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 202 GRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHcCCCEeec
Confidence 98999999999999875
No 267
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=51.23 E-value=1.8e+02 Score=31.60 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCG--YEVTEA--TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A--~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
+.+||.||----.........|...+ ++++.+ .+.+.|.+..++ ..+..+..|+ +.+-+.. ..
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~--~~~~~~~~~~----------~~ll~~~-~i 68 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE--FGIAKAYTDL----------EELLADP-DI 68 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH--cCCCcccCCH----------HHHhcCC-CC
Confidence 56789999876555555555565554 466644 455555555544 2222233332 2221111 12
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCC--HHHHHHHHHHH
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~--~eeL~~~L~~l 205 (780)
++-+|......-.+.+.+|+++|..=|+-||+. .+|...++...
T Consensus 69 D~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 69 DAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred CEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 343444444455678899999999999999984 56666544443
No 268
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=51.14 E-value=71 Score=41.85 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=68.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-C-CCCCH-HHHHHHHHhh
Q 004001 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-M-PCLSG-VALLSKIMSH 157 (780)
Q Consensus 88 lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi-M-P~mdG-leLl~~IRs~ 157 (780)
.+|||. |-+..=..++.-+|+..||+|+... ..++.++.+.+ ..+|+|.+-. | +.+.. .++++.|++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 478877 7777778888999999999998433 56778888877 7899999887 5 34443 4678888654
Q ss_pred cCCCCccEEEEecCCCHHHH-HHH--HHCCCCeEEe
Q 004001 158 KTRKNLPVIMMSSLDSMGLV-FKC--LSKGAVDFLV 190 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~-~~a--l~aGAddyL~ 190 (780)
...+||++--+..+.... .+. .-.|++.|..
T Consensus 830 --g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~ 863 (1229)
T PRK09490 830 --GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT 863 (1229)
T ss_pred --CCCCeEEEEeeccchhhhhhhhhhcccCCcEEec
Confidence 457887776655543331 111 1128877764
No 269
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=50.80 E-value=1.1e+02 Score=33.68 Aligned_cols=109 Identities=16% Similarity=0.313 Sum_probs=63.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE--EE--EECCHHHHHH----HHHhcCCCceEEEEcc-CCCCC--HHHHHHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE--VT--EATNGLQAWK----ILEDLTNHIDLVLTEV-MPCLS--GVALLSKI 154 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~--~A~dg~eALe----~L~~~~~~pDLVLlDi-MP~md--GleLl~~I 154 (780)
+..-++++||....+.+|. .+|.. ++ ...+..+.+. .+.. ..-=.++.|. ||..+ |+.|+++.
T Consensus 29 ~~~D~iaaEDTR~t~~LL~----~~~I~~~~is~h~hne~~~~~~li~~l~~--g~~valVSDAG~P~ISDPG~~LV~~a 102 (275)
T COG0313 29 KEVDVIAAEDTRVTRKLLS----HLGIKTPLISYHEHNEKEKLPKLIPLLKK--GKSVALVSDAGTPLISDPGYELVRAA 102 (275)
T ss_pred hhCCEEEEeccHHHHHHHH----HhCCCCceecccCCcHHHHHHHHHHHHhc--CCeEEEEecCCCCcccCccHHHHHHH
Confidence 4567999999987776554 44542 22 2234444444 3433 2223677899 99875 99999999
Q ss_pred HhhcCCCCccEEEEecCCCHHHHHHHHHCCC--CeEEeC---CCCHHHHHHHHHHHH
Q 004001 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA--VDFLVK---PIRKNELKNLWQHVW 206 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~~~~e~~~~al~aGA--ddyL~K---P~~~eeL~~~L~~ll 206 (780)
++. .++|+.+.+.... ....+..|. +.|+.. |-...+-...+..+.
T Consensus 103 ~~~----gi~V~~lPG~sA~--~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~ 153 (275)
T COG0313 103 REA----GIRVVPLPGPSAL--ITALSASGLPSQRFLFEGFLPRKSKERRKRLEALA 153 (275)
T ss_pred HHc----CCcEEecCCccHH--HHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHH
Confidence 753 5899999876543 233334442 334433 333444444444443
No 270
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=50.71 E-value=2.2e+02 Score=32.45 Aligned_cols=91 Identities=9% Similarity=0.161 Sum_probs=54.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gye-V~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
+|+.+|-++...+.++.-++..+.+ +. ...+....+... ...||+|++|- ++.. .+++..+-+ ....--+|
T Consensus 71 ~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP-fGs~-~~fld~al~--~~~~~glL 143 (374)
T TIGR00308 71 EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP-FGTP-APFVDSAIQ--ASAERGLL 143 (374)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC-CCCc-HHHHHHHHH--hcccCCEE
Confidence 6999999999999999988877653 33 333444443332 24699999996 3321 234433311 11233578
Q ss_pred EEecCCCHHH----HHHHH-HCCCC
Q 004001 167 MMSSLDSMGL----VFKCL-SKGAV 186 (780)
Q Consensus 167 vLSa~~~~e~----~~~al-~aGAd 186 (780)
.+|+.+.... ...|+ ..|+.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~ 168 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGAN 168 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCc
Confidence 8887654432 34555 44643
No 271
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=50.51 E-value=71 Score=33.85 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=44.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-cCCCceEEEEcc--CCCCCHHHHHHHH
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILED-LTNHIDLVLTEV--MPCLSGVALLSKI 154 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~-~~~~pDLVLlDi--MP~mdGleLl~~I 154 (780)
+|.-||-++...+..++.|++.|+ .|..... -+|++.+.. ....||+||+|. ..-..-++.+..+
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 799999999999999999999987 3443331 344444442 236899999998 3333344444333
No 272
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=50.29 E-value=1.1e+02 Score=32.09 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=40.1
Q ss_pred EECCHHHHHHHHHhc-CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCC
Q 004001 116 EATNGLQAWKILEDL-TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193 (780)
Q Consensus 116 ~A~dg~eALe~L~~~-~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~ 193 (780)
...+.+++++.++.. ...+.+ +.+ |-.-+.++++++|++. ++++. |-.-.--+.+.+.+++++|| +||+-|.
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~--iEit~~t~~a~~~i~~l~~~--~~~~~-vGAGTVl~~~~a~~a~~aGA-~FivsP~ 88 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRV--LEVTLRTPVALDAIRLLRKE--VPDAL-IGAGTVLNPEQLRQAVDAGA-QFIVSPG 88 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCE--EEEeCCCccHHHHHHHHHHH--CCCCE-EEEEeCCCHHHHHHHHHcCC-CEEECCC
Confidence 444555555544321 122332 233 4444567777777543 24432 22233345666777778887 4555565
Q ss_pred CHHHHHHH
Q 004001 194 RKNELKNL 201 (780)
Q Consensus 194 ~~eeL~~~ 201 (780)
.-.++...
T Consensus 89 ~~~~v~~~ 96 (204)
T TIGR01182 89 LTPELAKH 96 (204)
T ss_pred CCHHHHHH
Confidence 55544433
No 273
>PLN02591 tryptophan synthase
Probab=50.21 E-value=73 Score=34.35 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 146 SGVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
+.+++++++|. ..++|+|+|+-+.. .....+|.++|++++|.-.+.++|....+..+.
T Consensus 65 ~~~~~~~~~r~---~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAP---QLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhc---CCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 35777788863 25689999987653 345778899999999999999888877766653
No 274
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=50.19 E-value=97 Score=33.75 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=47.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 115 TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 115 ~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.+.+.+++.+.++ ...|+|.+|- -|. +--++++.++. ..+++||+++- --..+.+.+..+.|++.+..
T Consensus 188 Vev~t~eea~~A~~---~gaD~I~ld~~~p~-~l~~~~~~~~~--~~~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAE---AGADILQLDKFSPE-ELAELVPKLRS--LAPPVLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHHhc--cCCCceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 47889999998875 4689999998 453 22234444532 22467766554 45678888999999988754
No 275
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=50.07 E-value=76 Score=37.94 Aligned_cols=37 Identities=8% Similarity=-0.214 Sum_probs=28.2
Q ss_pred CCCCCcHHHHHHHHhCCc-EEeccccCCcc-eeeEEEEE
Q 004001 23 KRDENAVVGEQQHLVGDD-RLNDSSIAEDV-KDGCEGAV 59 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~-I~v~S~~G~GS-~fg~~~~~ 59 (780)
...++++|+.++.+++|. +.+.|..+.|+ .|.+.+.+
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~i 152 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKI 152 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEe
Confidence 345599999999999987 99999988776 44444443
No 276
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=50.02 E-value=1.4e+02 Score=31.00 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=49.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye-V~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+|..||-++.....++.-|+..+.. +. ...+..+.+.. ....||+||+|- -...-..++++.|........-.
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~ 153 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEA 153 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh---cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCc
Confidence 37999999999999999999888753 33 34454444422 123599999996 22222345677775432222234
Q ss_pred EEEEecC
Q 004001 165 VIMMSSL 171 (780)
Q Consensus 165 IIvLSa~ 171 (780)
||++...
T Consensus 154 iv~ve~~ 160 (199)
T PRK10909 154 LIYVESE 160 (199)
T ss_pred EEEEEec
Confidence 6666543
No 277
>PRK00811 spermidine synthase; Provisional
Probab=49.92 E-value=86 Score=34.09 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=43.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC------CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG------YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G------yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----GleLl~~I 154 (780)
.+|.+||=|+.+.+..+..|.... -+|. ...|+.+.+.. ....||+||+|. -|..- ..++++.+
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~ 177 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPVGPAEGLFTKEFYENC 177 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCCCchhhhhHHHHHHHH
Confidence 479999999999999999886532 1343 46666665543 235799999998 55322 23455555
Q ss_pred H
Q 004001 155 M 155 (780)
Q Consensus 155 R 155 (780)
+
T Consensus 178 ~ 178 (283)
T PRK00811 178 K 178 (283)
T ss_pred H
Confidence 4
No 278
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.91 E-value=82 Score=32.66 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCce-EEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCC-CCeEEe
Q 004001 120 GLQAWKILEDLTNHID-LVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLV 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pD-LVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aG-AddyL~ 190 (780)
..+.++.+.. ..++ ++++|. .-+ ..| +++++++++. ..+|||+-.+-.+.+.+.++++.| +++++.
T Consensus 148 ~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 3566666654 3455 778776 322 344 6888888653 248999988889999999999988 999875
No 279
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=49.57 E-value=2.5e+02 Score=30.17 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=66.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEcc--CC----CCCHHHHHHHHHh
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDi--MP----~mdGleLl~~IRs 156 (780)
.++++||.+.+. ...+..+....|+ .|.... +.++..+++.. .|++|+=. .+ +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 567788876553 3456666666543 444333 33556666654 56766533 22 122567777773
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+- .... ..+.+..+-.+++..|-+.++|...|.+++.
T Consensus 293 ----~G~PvI~s-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 ----SGVPVVAT-RHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred ----cCCCEEEe-CCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 45788753 3322 2344566777899999999999999998865
No 280
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=49.08 E-value=1.9e+02 Score=31.58 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred cEEEEEeC---CHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004001 88 LKVLLVEN---DDSTRHVVAALLRNCGY---EVTEA---TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (780)
Q Consensus 88 lrVLIVDD---D~~~r~~L~~lL~~~Gy---eV~~A---~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~ 158 (780)
.+++|+-+ .+.....++..+...+. .|... -+.++..+++.. .|++|+=...+.-|+-+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~~e~~g~~~lEA~a--- 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSIYEPLGIVNLEAMA--- 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCccCCCChHHHHHHH---
Confidence 34555432 33344555555554433 13332 245566666643 5777653323344667777763
Q ss_pred CCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCH------HHHHHHHHHHHH
Q 004001 159 TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK------NELKNLWQHVWR 207 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~------eeL~~~L~~llr 207 (780)
..+|||+ |... ...+.+..+..+++.+|-+. ++|...|..++.
T Consensus 303 --~G~PvI~-s~~~---~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 --CGTPVVA-SATG---GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred --cCCCEEE-eCCC---CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 4578875 3332 23455667888999999888 888888888764
No 281
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=48.82 E-value=1.9e+02 Score=31.76 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=61.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE---CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEA---TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A---~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.++++||.+-+. +..+..+.+..+. .|... .+..+.+..+- ...|++|+=...+.=|+-+++.+. .
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~---~~~d~~v~~s~~Egf~~~~lEAma-----~ 280 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKI---KNVSALLLTSKFEGFPMTLLEAMS-----Y 280 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHH---hcCcEEEECCcccCcChHHHHHHH-----c
Confidence 345666655443 3344555554443 34332 22222222211 124555542222223677777773 3
Q ss_pred CccEEEEec-CCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 162 NLPVIMMSS-LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 162 ~iPIIvLSa-~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+|||. +. ... ..+.+..|..++|..|-+.++|...|..++...
T Consensus 281 G~Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 281 GIPCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CCCEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 578875 33 222 335567788999999999999999999987654
No 282
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=48.78 E-value=26 Score=29.90 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=28.0
Q ss_pred CCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEE
Q 004001 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
...++++|++++..++|.+.+.+..+.|..+.+.++
T Consensus 74 ~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 109 (111)
T smart00387 74 TGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLP 109 (111)
T ss_pred ccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEee
Confidence 445689999999999999988877777666655544
No 283
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=48.62 E-value=1e+02 Score=34.81 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=59.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCEEE-EECCHHH-HHHHHHhcCCCceE-EEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNC--GYEVT-EATNGLQ-AWKILEDLTNHIDL-VLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~-~A~dg~e-ALe~L~~~~~~pDL-VLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.+||.||.- -. .......|... +++++ +++...+ |-+..++ +.+ +..|+ -+++ . ..
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~----~gi~~y~~~------eell----~---d~ 63 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHR----LGVPLYCEV------EELP----D---DI 63 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH----hCCCccCCH------HHHh----c---CC
Confidence 478999997 44 33344444443 57777 4444444 4444433 332 22222 1222 1 24
Q ss_pred CccEEEEec----CCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSS----LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 162 ~iPIIvLSa----~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
++-+|.+.. ..-.+.+.+|+++|..=++-||+..+|..+++..+-+
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 555555521 2446788899999999999999997777766665543
No 284
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=48.59 E-value=1.8e+02 Score=31.38 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=50.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE--EEC---CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY---EVT--EAT---NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy---eV~--~A~---dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
-+|.|+-++......+..+|+..+. .|. .+. +....|..++. ..+|+||+.. ...+...+++++++...
T Consensus 130 ~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~--~~~d~vv~~~-~~~~~~~~~~qa~~~g~ 206 (327)
T cd06382 130 KSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKN--SGDNRIIIDC-SADILIELLKQAQQVGM 206 (327)
T ss_pred cEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHh--cCceEEEEEC-CHHHHHHHHHHHHHhCc
Confidence 4566665565567778888887654 333 222 45666777765 5789999865 33456778888876554
Q ss_pred CCCccEEEEecCC
Q 004001 160 RKNLPVIMMSSLD 172 (780)
Q Consensus 160 ~~~iPIIvLSa~~ 172 (780)
.....+.+++...
T Consensus 207 ~~~~~~~i~~~~~ 219 (327)
T cd06382 207 MSEYYHYIITNLD 219 (327)
T ss_pred cccceEEEEecCC
Confidence 4333344455543
No 285
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.28 E-value=1.5e+02 Score=34.66 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=43.2
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHH
Q 004001 86 RSLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r---~~L~~lL~~~GyeV~~A~---dg----~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~ 153 (780)
.+.+|+||+-|..-. +.|+.+-+..+..+.... +. .++++.++. ..+|+||+|. -...+ -+++++
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTaGr~~~d-~~lm~E 203 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTSGRHKQE-DSLFEE 203 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCCCcch-HHHHHH
Confidence 466899999876432 223333334455555433 22 245666654 5799999997 21111 234444
Q ss_pred HHhh--cCCCCccEEEEecC
Q 004001 154 IMSH--KTRKNLPVIMMSSL 171 (780)
Q Consensus 154 IRs~--~~~~~iPIIvLSa~ 171 (780)
|+.. ...++..++++.+.
T Consensus 204 l~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 204 MLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred HHHHhhhcCCcEEEEEeccc
Confidence 4332 12344445556543
No 286
>PLN02316 synthase/transferase
Probab=48.21 E-value=1.9e+02 Score=37.35 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=62.2
Q ss_pred ccEEEEEeC--CHHHHHHHHHHHHhCCC----EEEEECCHHHHH--HHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004001 87 SLKVLLVEN--DDSTRHVVAALLRNCGY----EVTEATNGLQAW--KILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (780)
Q Consensus 87 ~lrVLIVDD--D~~~r~~L~~lL~~~Gy----eV~~A~dg~eAL--e~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~ 158 (780)
.++++||.+ ++.....|..+...++. .|..+....+.+ .++. ..|++|+=.+-+.-|+-+++.++.
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya----aADiflmPS~~EP~GLvqLEAMa~-- 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA----GADFILVPSIFEPCGLTQLTAMRY-- 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH----hCcEEEeCCcccCccHHHHHHHHc--
Confidence 456677764 33344555555554432 343322223332 2332 357777533334457777777742
Q ss_pred CCCCccEEEEecCCCHHHHHHH---------HHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 159 TRKNLPVIMMSSLDSMGLVFKC---------LSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~a---------l~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+|+|+-..-.-.+.+... ...+..+||..|.++..|..+|.+++..+
T Consensus 943 ---GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~ 999 (1036)
T PLN02316 943 ---GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAW 999 (1036)
T ss_pred ---CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhh
Confidence 3445543222333333221 01247899999999999999999887643
No 287
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=48.12 E-value=1.7e+02 Score=31.91 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=50.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHh--CCCEEEE-------E-CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDS----TRHVVAALLRN--CGYEVTE-------A-TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~----~r~~L~~lL~~--~GyeV~~-------A-~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-+|.||.++.. ..+.+...|++ .|.+|+. . .+....+..++. ..+|+|++...+. +...+++.
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~--~~~d~v~~~~~~~-~~~~~~~~ 220 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKA--SGADTVITGNWGN-DLLLLVKQ 220 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHH--cCCCEEEEcccCc-hHHHHHHH
Confidence 35666654333 45667788888 8887752 1 455566777776 6799999866333 67788999
Q ss_pred HHhhcCCCCccEEEEec
Q 004001 154 IMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa 170 (780)
+++.. .+++++..+.
T Consensus 221 ~~~~g--~~~~~~~~~~ 235 (342)
T cd06329 221 AADAG--LKLPFYTPYL 235 (342)
T ss_pred HHHcC--CCceEEeccc
Confidence 97654 3566655443
No 288
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=48.05 E-value=1.1e+02 Score=37.32 Aligned_cols=110 Identities=6% Similarity=-0.016 Sum_probs=72.6
Q ss_pred ccEEEEEeCCHHHH-----HHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHH
Q 004001 87 SLKVLLVENDDSTR-----HVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIM 155 (780)
Q Consensus 87 ~lrVLIVDDD~~~r-----~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdGleLl~~IR 155 (780)
..+|+|+-=-+... .....+|..-||++. .+.+.+++.+.... ...+|+++-. -....+-++++.||
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~--sga~i~viCssD~~Y~~~a~~~~~al~ 571 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK--AGAQVAVLCSSDKVYAQQGLEVAKALK 571 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh--cCCCEEEEeCCCcchHHHHHHHHHHHH
Confidence 45788776444333 445566666689887 34667888888776 4566666543 23345678899997
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
+.. . .+|+|.+.... ......+|+|+||.--.+.-+++..++.
T Consensus 572 ~ag--~--~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 572 AAG--A--KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred hCC--C--CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 643 2 36778777654 3347889999999988877665555444
No 289
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=47.93 E-value=56 Score=34.88 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=45.4
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcC
Q 004001 88 LKVLLVENDD------STRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDDD~------~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~ 159 (780)
|+||++-... .....+...|.+.|++|..+. +.......+.. ..||||.+-. ....-.+.++..+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccCccCHHHHHHHH----
Confidence 4788776553 356667788888899887433 33344455544 6799998765 44444444444442
Q ss_pred CCCccEEEE
Q 004001 160 RKNLPVIMM 168 (780)
Q Consensus 160 ~~~iPIIvL 168 (780)
..+|+|+.
T Consensus 75 -~~~~~v~~ 82 (365)
T cd03825 75 -DRKPVVWT 82 (365)
T ss_pred -cCCCEEEE
Confidence 35676654
No 290
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.90 E-value=2.8e+02 Score=30.04 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE------eCCCCHHHHHHHHHHHHHHh
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL------VKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL------~KP~~~eeL~~~L~~llrr~ 209 (780)
++++++|++. .++|||....-.+.+.+.+++.+||+.+. .-|.-..++..-+.+++++.
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 4777787653 26999999998899999999999997653 34666666666666666544
No 291
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.55 E-value=2.9e+02 Score=28.82 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=52.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-CC---CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe---
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--- 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDi-MP---~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~--- 190 (780)
+..+..+.+.. ..++ |+++|+ .- ..-.++++++|++. ..+|||+..+-.+.+.+.+++..|++.++.
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 45555555554 3444 555555 21 22347788888653 368999998888888888899999998864
Q ss_pred ---CCCCHHHHHHH
Q 004001 191 ---KPIRKNELKNL 201 (780)
Q Consensus 191 ---KP~~~eeL~~~ 201 (780)
.|+.+.++...
T Consensus 225 ~~~~~~~~~~~~~~ 238 (241)
T PRK13585 225 LYKGKFTLEEAIEA 238 (241)
T ss_pred HhcCCcCHHHHHHH
Confidence 57776666544
No 292
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=47.34 E-value=2.1e+02 Score=30.55 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=62.1
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEE--EE---C--CHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHHhhcCCC
Q 004001 92 LVENDDSTRHVVAALLRNCGYEVT--EA---T--NGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKTRK 161 (780)
Q Consensus 92 IVDDD~~~r~~L~~lL~~~GyeV~--~A---~--dg~eALe~L~~~~~~pDLVLlDi-MP~m--dGleLl~~IRs~~~~~ 161 (780)
|+.|...+.++++.+- ..+.-|. .- . +..+..+.+.+ ...|.|.+|. .++. -.++++++|++. ..
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~--~~ 190 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEE--FN 190 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHh--cC
Confidence 4455555555555554 4444333 11 1 22244444554 5688888898 7764 248888888753 23
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+|||..-+-.+.+.+.++++.||+.+..
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 58999988888899999999999998764
No 293
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.29 E-value=1.8e+02 Score=31.65 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHH---HHH-hCC--C-EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHVVAA---LLR-NCG--Y-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~---lL~-~~G--y-eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.|||.|++-.+.-.+.. .++ ..+ . -.+.+.+.+++.+.+. ..+|.|.+|-|. ++.++++.+.. ..
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~---~gaDyI~ld~~~----~e~l~~~~~~~-~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALE---AGADIIMLDNMS----PEELREAVALL-KG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH---cCCCEEEECCcC----HHHHHHHHHHc-CC
Confidence 57888887554422222 222 234 2 2347899999998886 368999999742 45566654321 12
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
++||+++ +--..+.+.+..+.|++.+-
T Consensus 226 ~ipi~Ai-GGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 226 RVLLEAS-GGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCcEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 5776654 44567888899999998764
No 294
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=47.10 E-value=1.7e+02 Score=31.88 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=43.4
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+=...+.-|+.+++.+. ..+|||..-.... ..+.+..|..+||..|-+.++|..+|..++.
T Consensus 279 ad~~v~~S~~Eg~~~~~lEAma-----~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~ 344 (372)
T cd04949 279 AQLSLLTSQSEGFGLSLMEALS-----HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLN 344 (372)
T ss_pred hhEEEecccccccChHHHHHHh-----CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHc
Confidence 4544432233344677777772 4578886532211 2345567889999999999999999998875
No 295
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=46.93 E-value=1.2e+02 Score=34.38 Aligned_cols=63 Identities=27% Similarity=0.286 Sum_probs=42.7
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~~-----r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
.|+|||-|.... ...+...|+..|+++..+. +..++++.++. ..+|+||- +-+.+-+++.+.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE--EKVDFILA--VGGGSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH--cCCCEEEE--eCChHHHHHHHH
Confidence 589999776443 3567888888888776543 34567777776 67898874 455555666665
Q ss_pred H
Q 004001 154 I 154 (780)
Q Consensus 154 I 154 (780)
+
T Consensus 105 i 105 (382)
T cd08187 105 I 105 (382)
T ss_pred H
Confidence 5
No 296
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=46.54 E-value=1e+02 Score=33.27 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=64.4
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
.++..|+.-...|-. .-.---..|.+.. ..||.+++|. --..|.-.++..|+.-...+..|||=+.. .+..++.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHH
Confidence 355666543333332 2222234566655 6799999999 77778888999998777677778776554 4567889
Q ss_pred HHHHCCCCeEEeCCCCHHHH
Q 004001 179 KCLSKGAVDFLVKPIRKNEL 198 (780)
Q Consensus 179 ~al~aGAddyL~KP~~~eeL 198 (780)
++++.||..+|.-=++..|=
T Consensus 84 q~LD~GAqtlliPmV~s~eq 103 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQ 103 (255)
T ss_pred HHHccccceeeeeccCCHHH
Confidence 99999999999865654443
No 297
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.50 E-value=1.6e+02 Score=27.94 Aligned_cols=76 Identities=7% Similarity=-0.038 Sum_probs=54.2
Q ss_pred CCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC-CCHHHHHHHHHHHHHH
Q 004001 132 NHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP-IRKNELKNLWQHVWRR 208 (780)
Q Consensus 132 ~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP-~~~eeL~~~L~~llrr 208 (780)
...+||.++. .-+.-|+.+.+.||++..+. --|--++.--.+.+.-+.+.|++.|.++. ..++.....+..+-..
T Consensus 18 ~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~--GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~fs~~ 95 (110)
T PF06073_consen 18 DRLPLIAIDFPKFTDGRGFSQARLLRERYGYT--GELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDFSVS 95 (110)
T ss_pred cCCCEEEEECCCcCCchHhHHHHHHHHHcCCC--CcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhCCcc
Confidence 4577888886 55667899999998554332 23556677778888889999999998884 6666666665554333
Q ss_pred h
Q 004001 209 C 209 (780)
Q Consensus 209 ~ 209 (780)
+
T Consensus 96 Y 96 (110)
T PF06073_consen 96 Y 96 (110)
T ss_pred c
Confidence 3
No 298
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=46.46 E-value=65 Score=32.54 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=47.7
Q ss_pred HHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCccEEEEec
Q 004001 104 AALLRNCGYEVT-EAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMMSS 170 (780)
Q Consensus 104 ~~lL~~~GyeV~-~A~--dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~--~~~~iPIIvLSa 170 (780)
.+.++..+..+. .+. +..+.++.+.. ..|.|+++. .|+.+| ++.++++++.. ..+++||++.-+
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG 174 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG 174 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh---hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 444455566544 232 23444444433 268888876 666443 34455554332 112477766554
Q ss_pred CCCHHHHHHHHHCCCCeEEe
Q 004001 171 LDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~ 190 (780)
- ..+.+.++++.|++.++.
T Consensus 175 I-~~env~~~~~~gad~iiv 193 (211)
T cd00429 175 I-NLETIPLLAEAGADVLVA 193 (211)
T ss_pred C-CHHHHHHHHHcCCCEEEE
Confidence 4 457888999999998875
No 299
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.42 E-value=1.3e+02 Score=36.09 Aligned_cols=83 Identities=23% Similarity=0.275 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH--HHHHHHHHhhcCC
Q 004001 88 LKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdG--leLl~~IRs~~~~ 160 (780)
.+|+||+-|..- .+.+..+-+..|+.+..+.+..+....++.. ..+|+||+|. +...+- .+.+..|+...
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-- 457 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-- 457 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCCCcchhhHHHHHHHHHHHHhh--
Confidence 578888876522 2334444344577777777777766666653 4699999997 322221 22334443221
Q ss_pred CCccEEEEecCCC
Q 004001 161 KNLPVIMMSSLDS 173 (780)
Q Consensus 161 ~~iPIIvLSa~~~ 173 (780)
....+++|.+...
T Consensus 458 ~~a~lLVLpAtss 470 (559)
T PRK12727 458 QVTSLLVLPANAH 470 (559)
T ss_pred cCCcEEEEECCCC
Confidence 2234666666544
No 300
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.38 E-value=70 Score=33.16 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=36.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
++|.|||--.-+...+...|++.|+ ++....+.+++ ..+|.||+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 5899999888888899999999999 78888776652 35788886
No 301
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=46.26 E-value=1.4e+02 Score=31.87 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=67.4
Q ss_pred CccEEEEEeCC-HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004001 86 RSLKVLLVEND-DSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 86 ~~lrVLIVDDD-~~~r~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~ 160 (780)
...+|=.|.+. ......|...|.++||.|. ++.+...|..++++...+|-+|+-|- |++.+|++. ..
T Consensus 38 ~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT--------s~ 109 (262)
T KOG3040|consen 38 QHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT--------SD 109 (262)
T ss_pred cCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC--------CC
Confidence 44566666544 5566778888899999886 67788888899988777888888888 999998643 24
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|+.-||-+. .+-|+.+.|..+.+-++..
T Consensus 110 pn~VVigla--------------------pe~F~y~~ln~AFrvL~e~ 137 (262)
T KOG3040|consen 110 PNCVVIGLA--------------------PEGFSYQRLNRAFRVLLEM 137 (262)
T ss_pred CCeEEEecC--------------------cccccHHHHHHHHHHHHcC
Confidence 666555443 2445667777776666654
No 302
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=45.87 E-value=1.8e+02 Score=26.58 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=17.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEEECC
Q 004001 93 VENDDSTRHVVAALLRNCGYEVTEATN 119 (780)
Q Consensus 93 VDDD~~~r~~L~~lL~~~GyeV~~A~d 119 (780)
-|.+......+...|...||.+.....
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~aT~g 34 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVATEG 34 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEEchH
Confidence 344444555666677778999875443
No 303
>PRK10060 RNase II stability modulator; Provisional
Probab=45.16 E-value=1.7e+02 Score=35.62 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc--CC----CCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 101 HVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi--MP----~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
..+...|+..|+.+.. +..+-..+..|.. -++|.|=+|- +- +.....+++.|-.......+.|| ..+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 3445667888998874 6677888888887 6799999995 22 22345566655332222345544 55667
Q ss_pred CHHHHHHHHHCCCCe----EEeCCCCHHHHHHHHHH
Q 004001 173 SMGLVFKCLSKGAVD----FLVKPIRKNELKNLWQH 204 (780)
Q Consensus 173 ~~e~~~~al~aGAdd----yL~KP~~~eeL~~~L~~ 204 (780)
+.+....+...|++. |+.||+..+++...+..
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 777788888999863 47799999998876654
No 304
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.02 E-value=2.2e+02 Score=30.32 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCceE-EEEcc-C-CCCCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCC-CCeEEe---
Q 004001 120 GLQAWKILEDLTNHIDL-VLTEV-M-PCLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLV--- 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDL-VLlDi-M-P~mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aG-AddyL~--- 190 (780)
..+.++.+.+ ..+|. ++.|+ - ..+.| +++++++++. ..+|||+.-+-.+.+.+.+++..| ++..+.
T Consensus 157 ~~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 157 AVEWAKEVEK--LGAGEILLTSMDKDGTKSGYDLELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHHHHH--cCCCEEEEeCcCcccCCCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 3444555554 45664 44444 1 11222 6788888754 368999999999999999999988 888554
Q ss_pred ---CCCCHHHHHHHHH
Q 004001 191 ---KPIRKNELKNLWQ 203 (780)
Q Consensus 191 ---KP~~~eeL~~~L~ 203 (780)
.-++..+++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 232 FHYREITIGEVKEYLA 247 (254)
T ss_pred HhCCCCCHHHHHHHHH
Confidence 4566666655544
No 305
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=44.90 E-value=2.3e+02 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=35.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
..+|..||-++...+..+.-+...+.++.. .|..+.+..... ..||+||+|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECC
Confidence 458999999999999888888877765543 343333321111 4699999985
No 306
>PRK04148 hypothetical protein; Provisional
Probab=44.65 E-value=60 Score=31.81 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=60.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+..+||+|.== +...+...|.+.|++|+.++--.++++.++. ...+++..|+ -|.++-++-+.
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~------------ 79 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAK------------ 79 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCC------------
Confidence 34678888765 3344667778889999999988889998876 5678899998 78765332211
Q ss_pred EEEEecCCCHH----HHHHHHHCCCCeEEeCCCCHHH
Q 004001 165 VIMMSSLDSMG----LVFKCLSKGAVDFLVKPIRKNE 197 (780)
Q Consensus 165 IIvLSa~~~~e----~~~~al~aGAddyL~KP~~~ee 197 (780)
++.+-+...+ .+.-|.+.|| +++.+|+.-++
T Consensus 80 -liysirpp~el~~~~~~la~~~~~-~~~i~~l~~e~ 114 (134)
T PRK04148 80 -LIYSIRPPRDLQPFILELAKKINV-PLIIKPLSGEE 114 (134)
T ss_pred -EEEEeCCCHHHHHHHHHHHHHcCC-CEEEEcCCCCC
Confidence 2233333333 2333456666 46667776554
No 307
>PLN02591 tryptophan synthase
Probab=44.44 E-value=2.7e+02 Score=30.11 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=62.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EE-CCH-HHHHHHHHhcCCCceEEEEccCCCC---------CHHHHHHHHHhh
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVT-EA-TNG-LQAWKILEDLTNHIDLVLTEVMPCL---------SGVALLSKIMSH 157 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~-~A-~dg-~eALe~L~~~~~~pDLVLlDiMP~m---------dGleLl~~IRs~ 157 (780)
|||.|-...-...+...+++.|+..+ .+ .+. ++=++.+.... .+.|-+=-+.+. +-.++++++|+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~- 186 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKE- 186 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-
Confidence 67777776777778888888888665 33 333 33344444322 233322111211 12455777765
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
..++||++=.+-.+.+.+.++++.|||++++-.
T Consensus 187 --~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 --VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred --cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 357899987777788999999999999999754
No 308
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=44.27 E-value=1.7e+02 Score=31.14 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=62.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++++|+.+.+. ...+..++...+. .|.......+..+++.. .|++|+-...+.-|..+++.+. ..+|
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~e~~~~~~~Ea~a-----~G~P 288 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAWEGFGLVVAEAMA-----CELP 288 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccccCCChHHHHHHH-----cCCC
Confidence 467777776553 3445566665543 35544444455555543 5676654422333667777773 3568
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
||+ +..... .+.+.. .+++..|.+.++|...|..++.
T Consensus 289 vI~-~~~~~~---~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 289 VVA-TDAGGV---REVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred EEE-ecCCCh---hhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 775 333221 222222 5678889999999999999873
No 309
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.24 E-value=1.8e+02 Score=33.83 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=45.2
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEcc--CCCCC--HHHHH
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NGL----QAWKILEDLTNHIDLVLTEV--MPCLS--GVALL 151 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~---dg~----eALe~L~~~~~~pDLVLlDi--MP~md--GleLl 151 (780)
.+.+|+||+-|.. ..+.|..+....|..+..+. +.. ++++.+.. ..+|+||+|. ....| .++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccccCHHHHHHH
Confidence 4578999998842 23334444455566666443 332 34444443 5699999998 22222 34444
Q ss_pred HHHHhhcCCCCccEEEEecCC
Q 004001 152 SKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 152 ~~IRs~~~~~~iPIIvLSa~~ 172 (780)
..|... ..++-.++++.+..
T Consensus 205 ~~i~~~-~~p~e~lLVvda~t 224 (428)
T TIGR00959 205 AAIKEI-LNPDEILLVVDAMT 224 (428)
T ss_pred HHHHHh-hCCceEEEEEeccc
Confidence 455332 23444455555543
No 310
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.24 E-value=3.3e+02 Score=33.01 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=65.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++++||.|-+. +..|..+.+..|. .|.....-.+...++.. .|++++=...+.-|+-+++.+. ..+|
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~~EGfp~vlLEAMA-----~GlP 498 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSRYEGLPNVLIEAQM-----VGVP 498 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcccccCccHHHHHHHH-----hCCC
Confidence 467888887653 4567777777665 35555555555555543 6777763333445677888873 4578
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L 202 (780)
||..-... ..+.+..|..+||..|.+...|...+
T Consensus 499 VVATdvGG----~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 499 VISTPAGG----SAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred EEEeCCCC----cHHHcccCCcEEEECCCChhhHHHHH
Confidence 88543322 23556689999999999887776655
No 311
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=44.18 E-value=1.4e+02 Score=36.37 Aligned_cols=94 Identities=11% Similarity=0.180 Sum_probs=57.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++.+.+||.|+...+.+ ++.|+.|+..+ +-.+.|+...- .+.++||+-.-.+..-..++..+|+. .++++
T Consensus 422 ~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~~n~~i~~~ar~~--~p~~~ 493 (621)
T PRK03562 422 SGVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQTSLQLVELVKEH--FPHLQ 493 (621)
T ss_pred CCCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHHHHHHHHHHHHHh--CCCCe
Confidence 456788888888765544 34578776543 22334444332 45777776541122345566667554 57888
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL 189 (780)
||+-+. +.+...+..++||+..+
T Consensus 494 iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 494 IIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEe
Confidence 877654 45667788899998664
No 312
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=44.13 E-value=54 Score=33.66 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=35.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
++|||||-.......+...|+..|+++....+.. .+ ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EI----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HH----ccCCEEEE
Confidence 5899999999999999999999999998886532 22 25888876
No 313
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.11 E-value=1.8e+02 Score=32.15 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=58.2
Q ss_pred EEEEEe--CCH---HHHHHHHHHHHhCCCEEEEECCHHHHHH-----HH--HhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 89 KVLLVE--NDD---STRHVVAALLRNCGYEVTEATNGLQAWK-----IL--EDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 89 rVLIVD--DD~---~~r~~L~~lL~~~GyeV~~A~dg~eALe-----~L--~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
+|+||- +.+ .....+...|++.|+++.......+.+. .. ......+|+||+ -+.||. +++.++.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGt-~l~~~~~ 81 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV---VGGDGS-LLGAARA 81 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE---EeCcHH-HHHHHHH
Confidence 577773 223 3345566667788998876543322211 10 111124677765 356773 3333332
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
. ...++||+-+-. |=.+||. .+.++++..+|..+++
T Consensus 82 ~-~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 82 L-ARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLD 117 (295)
T ss_pred h-cCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHc
Confidence 2 236789887653 4457774 7889999999999875
No 314
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=44.03 E-value=51 Score=34.25 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-C---CCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCC
Q 004001 111 GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 111 GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-M---P~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAd 186 (780)
++.|....+.+++.+++.. ..|+|=+|. . | ..-.+++++||+.. +++|..-...+....|.++|+|
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~~------~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEKY------QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHCT------SEEEEE-SSHHHHHHHHHTT-S
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHhC------cEEeeecCCHHHHHHHHHcCCC
Confidence 5678888999999998874 689999997 3 6 77788999997532 6788888899999999999974
Q ss_pred eEEe
Q 004001 187 DFLV 190 (780)
Q Consensus 187 dyL~ 190 (780)
||.
T Consensus 115 -~I~ 117 (192)
T PF04131_consen 115 -IIG 117 (192)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 553
No 315
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=43.94 E-value=60 Score=34.25 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+.++.+.. ..-.|+++|+ .-+ +.| +++++.|.+. ..+||++-.+-.+.+.+.+++..|++..+.
T Consensus 147 ~~~~~~~~~~~--~~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAK--WPEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHH--hCCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 46677777765 3224899998 533 233 6778888643 468999999899999999999999999885
No 316
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=43.81 E-value=2.5e+02 Score=32.06 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=68.3
Q ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 87 SLKVLLVENDD-----STRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 87 ~lrVLIVDDD~-----~~r~~L~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
.++++||.+.. ...+.|+.+.+..+. .|.... +-++..+++.. .|++|.=...+.=|+-+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~~E~Fgi~~lEAMa-- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMWNEHFGIGVVEYMA-- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCccCCcccHHHHHHH--
Confidence 47888887642 355667777777665 455544 35667777754 5777653344444788888873
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHH---CCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLS---KGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~---aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+....... ...+. .|..+||.. ++++|..+|..++.
T Consensus 347 ---~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 ---AGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred ---cCCcEEEEcCCCCc---hheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 34677654322222 22333 577889963 89999999999876
No 317
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=43.80 E-value=73 Score=31.15 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
..++++.++. ..||+||+|. ++.. ......++ ..+..||+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt-aG~~-~~~~~~~~----~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET-VGVG-QSEVDIAS----MADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC-CccC-hhhhhHHH----hCCEEEEEECCC
Confidence 3556666665 5799999998 6654 22333442 234556666655
No 318
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=43.76 E-value=1.7e+02 Score=30.51 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=53.4
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHH
Q 004001 104 AALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 181 (780)
Q Consensus 104 ~~lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al 181 (780)
...|+..+. -|+...+.+++++.++.. ..-.+=++.+ +-..++++.++.|++.. +..-+|-.-.--+.+.+..++
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHH
Confidence 344555543 334555666666665532 1122335556 66667888888886542 221122223334567888999
Q ss_pred HCCCCeEEeCCCCHHHHHHHH
Q 004001 182 SKGAVDFLVKPIRKNELKNLW 202 (780)
Q Consensus 182 ~aGAddyL~KP~~~eeL~~~L 202 (780)
++|| +|+.-|..-.++....
T Consensus 81 ~aGA-~fivsp~~~~~v~~~~ 100 (206)
T PRK09140 81 DAGG-RLIVTPNTDPEVIRRA 100 (206)
T ss_pred HcCC-CEEECCCCCHHHHHHH
Confidence 9998 5666676665655443
No 319
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=43.37 E-value=2.3e+02 Score=31.54 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=54.2
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEcc---CCCCCH-HHHH
Q 004001 86 RSLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV---MPCLSG-VALL 151 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r---~~L~~lL~~~GyeV~~A~---dg----~eALe~L~~~~~~pDLVLlDi---MP~mdG-leLl 151 (780)
.+.+|+|++-|..-. +.+.......+..++... +. .+++..... ..+|+||+|. ++..+. ++-+
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTaGr~~~~~~l~~eL 218 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTAGRLHNKTNLMEEL 218 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCCCCCcCCHHHHHHH
Confidence 456899999876322 234444445566665442 22 233433333 6799999998 232222 2333
Q ss_pred HHHHhh-----cCCCCccEEEEecCCCHHHHHHHH----HCCCCeEEeCCCC
Q 004001 152 SKIMSH-----KTRKNLPVIMMSSLDSMGLVFKCL----SKGAVDFLVKPIR 194 (780)
Q Consensus 152 ~~IRs~-----~~~~~iPIIvLSa~~~~e~~~~al----~aGAddyL~KP~~ 194 (780)
+.|... +..+.-.++++.+......+.++. ..+.+.+|.==++
T Consensus 219 ~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 219 KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCC
Confidence 333211 123444567777765443333332 2456666543333
No 320
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.21 E-value=1.3e+02 Score=31.38 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHhCCCEEE
Q 004001 95 NDDSTRHVVAALLRNCGYEVT 115 (780)
Q Consensus 95 DD~~~r~~L~~lL~~~GyeV~ 115 (780)
+++.....+.+.|.+.|+.++
T Consensus 13 ~~~~~a~~ia~al~~gGi~~i 33 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAI 33 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEE
Confidence 344444444445555565444
No 321
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.15 E-value=2.3e+02 Score=31.45 Aligned_cols=101 Identities=25% Similarity=0.290 Sum_probs=59.3
Q ss_pred EEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEccCCCCCH
Q 004001 89 KVLLVEN--DDS---TRHVVAALLRNCGYEVTEATNGLQAWKI----------------LEDLTNHIDLVLTEVMPCLSG 147 (780)
Q Consensus 89 rVLIVDD--D~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~----------------L~~~~~~pDLVLlDiMP~mdG 147 (780)
+|+||-. .+. ....|...|...|++|.........+.. .......+|+||+ -+.||
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDG 83 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV---LGGDG 83 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---EcCCH
Confidence 5877733 233 3455666677889988876543332210 0110123566654 36677
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
. +|+..|.. ....+||+-+-. |=.+||. .+.++++...|.++++.
T Consensus 84 T-~L~aar~~-~~~~~PilGIN~-------------G~lGFL~-~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 84 T-ILRAAELA-RAADVPVLGVNL-------------GHVGFLA-EAEAEDLDEAVERVVDR 128 (306)
T ss_pred H-HHHHHHHh-ccCCCcEEEEec-------------CCCceec-cCCHHHHHHHHHHHHcC
Confidence 2 34444322 235689887643 5568887 47889999999998864
No 322
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=42.67 E-value=2.6e+02 Score=30.09 Aligned_cols=100 Identities=11% Similarity=0.113 Sum_probs=56.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EE-C-CHHHHHHHHHhcCCCceEEEEcc-CCCC------CHHHHHHHHHhhcC
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVT-EA-T-NGLQAWKILEDLTNHIDLVLTEV-MPCL------SGVALLSKIMSHKT 159 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~-~A-~-dg~eALe~L~~~~~~pDLVLlDi-MP~m------dGleLl~~IRs~~~ 159 (780)
|+|.|-.......+...+++.|.... .+ . +..+-+..+......|..++.=. -.+. +-.+.+++||+.
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~-- 196 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAY-- 196 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhh--
Confidence 44444444455566677778887644 22 2 22344444433222354443311 1121 235677777653
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
...||++=-+-.+.+.+.++.++|||.++.--
T Consensus 197 -~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 197 -SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 35687664445568899999999999998753
No 323
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=42.62 E-value=1.6e+02 Score=33.47 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=43.6
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-++|||-|... ..+.+...|+..|..+..+. +.+++.+.+++ ..+|+||- +-+.+-+++.+.|
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~--~~~D~Iia--iGGGS~iD~AK~i 107 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKE--NNCDSVIS--LGGGSPHDCAKGI 107 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHH--cCCCEEEE--eCCchHHHHHHHH
Confidence 48999987633 34567888888887765443 34567777776 67999874 4566667766665
Q ss_pred H
Q 004001 155 M 155 (780)
Q Consensus 155 R 155 (780)
.
T Consensus 108 a 108 (383)
T PRK09860 108 A 108 (383)
T ss_pred H
Confidence 3
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=42.56 E-value=2.3e+02 Score=33.04 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=44.1
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CHHH----HHHHHHhcCCCceEEEEcc---CC-CCCHHHHHH
Q 004001 87 SLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NGLQ----AWKILEDLTNHIDLVLTEV---MP-CLSGVALLS 152 (780)
Q Consensus 87 ~lrVLIVDDD~~~r---~~L~~lL~~~GyeV~~A~---dg~e----ALe~L~~~~~~pDLVLlDi---MP-~mdGleLl~ 152 (780)
+.+|+||+-|..-. +.|..+.+..|..+.... +..+ +++.... ..+|+||+|. ++ +...++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCcccCHHHHHHHH
Confidence 67899999885322 234444556677666442 4433 3333333 5699999998 22 122344444
Q ss_pred HHHhhcCCCCccEEEEecCC
Q 004001 153 KIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~ 172 (780)
.|... ..+.-.++++.+..
T Consensus 207 ~i~~~-v~p~evllVlda~~ 225 (433)
T PRK10867 207 AIKAA-VNPDEILLVVDAMT 225 (433)
T ss_pred HHHHh-hCCCeEEEEEeccc
Confidence 44322 23333355555544
No 325
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=42.54 E-value=3.1e+02 Score=29.95 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=59.0
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc---C---CCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 101 HVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV---M---PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi---M---P~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
+.+..+-+..+.-|. .+.+.++|..+.+ ...|.|.+.- . .+...++++.++++.- ...+|||+-.+-.
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~ 237 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIR 237 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCC
Confidence 455555555444333 3567777766554 4578777643 1 1334577788776432 2369999999999
Q ss_pred CHHHHHHHHHCCCCeEEe-CCC
Q 004001 173 SMGLVFKCLSKGAVDFLV-KPI 193 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~-KP~ 193 (780)
+...+.+++.+||+.+.. .|+
T Consensus 238 ~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 238 RGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred CHHHHHHHHHcCCCEEEEcHHH
Confidence 999999999999998754 344
No 326
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=42.52 E-value=1.9e+02 Score=32.44 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=42.7
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~~-----r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
.|+|||-|.... ...+...|+..|+++..+. +..++++.+++ ..+|+||- .-+.+-+++.+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG--IGGGSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCchHHHHHHH
Confidence 589999887552 2567888888887766543 24556677766 67898875 556666676665
Q ss_pred H
Q 004001 154 I 154 (780)
Q Consensus 154 I 154 (780)
+
T Consensus 102 i 102 (357)
T cd08181 102 I 102 (357)
T ss_pred H
Confidence 4
No 327
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=42.39 E-value=3.2e+02 Score=31.91 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=43.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHHHH-HHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHh
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NGLQA-WKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMS 156 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~---dg~eA-Le~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs 156 (780)
.+.+|+||+-|.. ..+.+..+....|..+.... +..+. .+.++.. ..+|+||+|. ....+ -+++++|+.
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~-~~~DvVIIDTAGr~~~d-~~lm~El~~ 199 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF-KKADVIIVDTAGRHALE-EDLIEEMKE 199 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh-hcCCEEEEECCCcccch-HHHHHHHHH
Confidence 4578999998753 23445555566677665432 33322 2223221 2359999997 22222 234444332
Q ss_pred h--cCCCCccEEEEecCC
Q 004001 157 H--KTRKNLPVIMMSSLD 172 (780)
Q Consensus 157 ~--~~~~~iPIIvLSa~~ 172 (780)
. ...++..++++.+..
T Consensus 200 l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 200 IKEAVKPDEVLLVIDATI 217 (437)
T ss_pred HHHHhcccceeEEEeccc
Confidence 1 123455566665544
No 328
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=42.34 E-value=10 Score=23.52 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.9
Q ss_pred cccccccc
Q 004001 606 LTQHYDNC 613 (780)
Q Consensus 606 ~~~~~~~~ 613 (780)
|.+|||||
T Consensus 6 fk~hhhhh 13 (16)
T PF08047_consen 6 FKHHHHHH 13 (16)
T ss_pred eccccccc
Confidence 55554443
No 329
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=42.24 E-value=2.3e+02 Score=31.16 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=59.1
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 89 KVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 89 rVLIVD--DD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~-------L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
+|+||- +.+.. ...+...|+..|+++.........+.. .......+|+||+ -+.||. +++.++.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGt-~l~~~~~ 82 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV---LGGDGT-MLGIGRQ 82 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE---ECCcHH-HHHHHHH
Confidence 477773 33333 355566667789987765433222110 0111134777775 356763 4455543
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.. ..++||+-+. .|=.+||. .+.++++...|.++++.
T Consensus 83 ~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 83 LA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred hc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 22 3578888664 34457888 78899999999998753
No 330
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=42.20 E-value=2.7e+02 Score=29.45 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=64.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHhcCCCceEEEEccCC------CCCHHHHHHHHHh
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEA--TNGLQAWKILEDLTNHIDLVLTEVMP------CLSGVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A--~dg~eALe~L~~~~~~pDLVLlDiMP------~mdGleLl~~IRs 156 (780)
.++++|+.+.+. ...+..+++..+. .|... -+.++...++.. .|++|+-... +.-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 456666665433 3345555555433 23332 234666666654 5666664322 233566777763
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+ +.... ..+.+..+..+++..|-+.++|...|..++.
T Consensus 284 ----~G~Pvi~-~~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 284 ----MGLPVIS-TDVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred ----cCCCEEe-cCCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 4578875 33222 2345667778999999999999999988864
No 331
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.20 E-value=2.8e+02 Score=29.43 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCce-EEEEcc-C-CCCCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC-CCCeEEe----
Q 004001 121 LQAWKILEDLTNHID-LVLTEV-M-PCLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-GAVDFLV---- 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pD-LVLlDi-M-P~mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a-GAddyL~---- 190 (780)
.+.++.+.. ..++ |++.++ - ..+.| +++++++++. ..+|||+--.-.+.+.+.++++. |++..+.
T Consensus 156 ~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 156 VEWAKEVEE--LGAGEILLTSMDRDGTKNGYDLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHHHH--cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 445555554 3454 567554 2 11222 6778888653 36899999888898899999975 9998876
Q ss_pred --CCCCHHHHHHHHH
Q 004001 191 --KPIRKNELKNLWQ 203 (780)
Q Consensus 191 --KP~~~eeL~~~L~ 203 (780)
.-+++.+++..+.
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 231 HFGEITIGELKAYLA 245 (253)
T ss_pred HcCCCCHHHHHHHHH
Confidence 4566677665554
No 332
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=42.15 E-value=1.6e+02 Score=30.43 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-CCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDi-MP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+.++.+.+ ..++ ++++|+ .-+. --++++++|++. ..+|||+-.+-.+.+.+.++++.|+++++.
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 34455665654 3344 556665 3221 236888888653 368999998888888899999999999875
No 333
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=42.12 E-value=2.4e+02 Score=25.81 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE-cc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 89 KVLLVEND--DSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT-EV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 89 rVLIVDDD--~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl-Di-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+|+|+-.. ......+...|...|..+....+.......+... ..-|++|+ .. --..+-+++++.+++ ..++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iS~~g~~~~~~~~~~~a~~----~g~~ 89 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIAISFSGETKETVEAAEIAKE----RGAK 89 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEEEeCCCCCHHHHHHHHHHHH----cCCe
Confidence 56665543 4455667777888898888887776655544332 22344443 33 222334566766654 3589
Q ss_pred EEEEecCCCHHH
Q 004001 165 VIMMSSLDSMGL 176 (780)
Q Consensus 165 IIvLSa~~~~e~ 176 (780)
||++|...+...
T Consensus 90 iv~iT~~~~~~l 101 (139)
T cd05013 90 VIAITDSANSPL 101 (139)
T ss_pred EEEEcCCCCChh
Confidence 999999876443
No 334
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=42.06 E-value=3.5e+02 Score=30.13 Aligned_cols=102 Identities=14% Similarity=0.252 Sum_probs=60.2
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC
Q 004001 86 RSLKVLLVEN----DDSTRHVVAALLRNCG-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (780)
Q Consensus 86 ~~lrVLIVDD----D~~~r~~L~~lL~~~G-yeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------md 146 (780)
.+..+++||- .....+.++.+-+... ..|. .+.+.+.|..+++ ...|.|++.+-|+ ..
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~---aGaD~I~vg~g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID---AGADGVKVGIGPGSICTTRIVTGVGVP 181 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh---cCCCEEEECCCCCcCcccceeCCCCCC
Confidence 3557777763 2333444444333322 4444 4677788877775 3578887632111 11
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
-+.++..+.+......+|||.--.-.+...+.+++.+||+....
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23344444322212358988777777889999999999998865
No 335
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=41.73 E-value=1e+02 Score=33.04 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHH
Q 004001 98 STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~ 176 (780)
.....|....++.|+......-..++++.|.+ +++-++=+ -.+.+-+.|++.+.+ ...|||+=|+....+.
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~----tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK----TGKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT----T-S-EEEE-TT--HHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH----hCCcEEEECCCCCHHH
Confidence 34556777888889988877777888898876 34445555 667788999999964 4589999999888776
Q ss_pred HHHHH----HCCCCeEEe------CCCCHHHHHHHHHHHHH
Q 004001 177 VFKCL----SKGAVDFLV------KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 177 ~~~al----~aGAddyL~------KP~~~eeL~~~L~~llr 207 (780)
+.+++ +.|..+++. -|..++++.-..-..|+
T Consensus 128 I~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~ 168 (241)
T PF03102_consen 128 IERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLK 168 (241)
T ss_dssp HHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHH
Confidence 66554 446655542 36666666543333343
No 336
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=41.37 E-value=3.2e+02 Score=30.17 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCC--CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|+.+++.+. ..+|||+..... ..+......+.|+ ...+.+.++|...|..++.
T Consensus 283 g~t~~EA~a-----~g~PvI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 283 GITLSEAAA-----LGVPVILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred chHHHHHHH-----hCCCEEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 555666662 357877654222 1222222334554 3335688999988888763
No 337
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=41.33 E-value=50 Score=35.54 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=36.3
Q ss_pred CccEEEEEe------CCH--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc
Q 004001 86 RSLKVLLVE------NDD--STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (780)
Q Consensus 86 ~~lrVLIVD------DD~--~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlD 140 (780)
+.++|.|+- .+. ..-..+...|++.||+|..+....+.+..+.. ..+|+||.-
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEe
Confidence 445666665 111 23466778888999999887666667777765 578998864
No 338
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=41.12 E-value=1.1e+02 Score=34.00 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=57.2
Q ss_pred EEEEeCCHHHHHHHHHH-------HHhCCC--EE-EEECCHHHHHHHHHh---cCCCceEEEEccC--CCC----CHHHH
Q 004001 90 VLLVENDDSTRHVVAAL-------LRNCGY--EV-TEATNGLQAWKILED---LTNHIDLVLTEVM--PCL----SGVAL 150 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~l-------L~~~Gy--eV-~~A~dg~eALe~L~~---~~~~pDLVLlDiM--P~m----dGleL 150 (780)
|||-|.+-...-.+... ++..++ .| +.+.+.++|++.+.- ....+|+|++|-| +.. +--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 77777765543222222 223334 33 378999999999870 0125899999975 211 22233
Q ss_pred HHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 151 LSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 151 l~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
.+.+... ....+|-.|+.-..+.+.+....|+|-+
T Consensus 253 ~~av~~~---~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 253 KEAVELI---NGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHhh---CCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 3333211 1223477888889999999999998644
No 339
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=41.00 E-value=3.2e+02 Score=32.66 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=58.9
Q ss_pred ccEEEEE--eCCHHHHHH---HHHHHH-hCCCEEEEECCHHHHHH----------------HHHhcCCCceEEEEccCCC
Q 004001 87 SLKVLLV--ENDDSTRHV---VAALLR-NCGYEVTEATNGLQAWK----------------ILEDLTNHIDLVLTEVMPC 144 (780)
Q Consensus 87 ~lrVLIV--DDD~~~r~~---L~~lL~-~~GyeV~~A~dg~eALe----------------~L~~~~~~pDLVLlDiMP~ 144 (780)
..+|+|| -+.+....+ |...|+ ..|+.|.........+. .+......+|+||+ -|
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs---iG 270 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT---LG 270 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE---EC
Confidence 3478887 344444444 444455 46888876543322221 00000123566664 36
Q ss_pred CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 145 mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.||. +|+..|.. ....+||+-+. .|=.+||. ++.++++...|..+++.
T Consensus 271 GDGT-lL~Aar~~-~~~~iPILGIN-------------~G~LGFLt-~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 271 GDGT-VLWAASMF-KGPVPPVVPFS-------------MGSLGFMT-PFHSEQYRDCLDAILKG 318 (508)
T ss_pred CcHH-HHHHHHHh-ccCCCcEEEEe-------------CCCcceec-ccCHHHHHHHHHHHHcC
Confidence 6773 44555432 23567887653 56678885 78999999999998763
No 340
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=40.90 E-value=2.3e+02 Score=29.34 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=41.4
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+=...+.-|.-+++.+. ..+|||+ +.... ..+.+..|..+++..+-++++|...|..++.
T Consensus 264 adi~i~ps~~e~~~~~~~Ea~~-----~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 264 ADVFVLPSYREGLPRVLLEAMA-----MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred ccEEEecCcccCcchHHHHHHH-----cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 4555543311233566777763 3578775 43332 2344555778899999999999999988764
No 341
>PLN02366 spermidine synthase
Probab=40.86 E-value=1.4e+02 Score=33.13 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=43.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~--Gy---eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----GleLl~~IR 155 (780)
.+|.+||=|+.+.+..+..|... ++ +|. ...|+.+.++... ...||+||+|. -|..- ..++++.++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 47999999999888888887643 11 343 4556666555332 25799999998 55322 224566664
Q ss_pred h
Q 004001 156 S 156 (780)
Q Consensus 156 s 156 (780)
.
T Consensus 194 ~ 194 (308)
T PLN02366 194 R 194 (308)
T ss_pred H
Confidence 3
No 342
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=40.78 E-value=1.8e+02 Score=31.39 Aligned_cols=105 Identities=9% Similarity=0.073 Sum_probs=64.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
.+++||.+.+... .+...+ .....+.-.-+.++..+++.. .|++|+-.. +.-|+-+++.+. ..+|||.
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~-e~~g~~~~Eama-----~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE-EDFGIVPVEAMA-----SGTPVIA 289 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc-CCCCchHHHHHH-----cCCCEEE
Confidence 6788888776533 333311 112233333456667777764 576664324 444566677763 3578887
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
..... ..+.+..|..+++..|-++++|...|..++..
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 54322 22345567789999999999999999888764
No 343
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.75 E-value=90 Score=31.36 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=53.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~~A~-------dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
...+|.++-..+.+.+.+...|++. |..++... +..+.++.+.. ..||+||+-+ +|...- ++.+++
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE~--~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPKQEL--WIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHHH--HHHHHH
Confidence 4679999999999999988888776 55655421 22335677776 7899999999 998653 455554
Q ss_pred hhcCCCCccEEEEec
Q 004001 156 SHKTRKNLPVIMMSS 170 (780)
Q Consensus 156 s~~~~~~iPIIvLSa 170 (780)
..- ..+|++-.+
T Consensus 121 ~~l---~~~v~~~vG 132 (171)
T cd06533 121 DRL---PVPVAIGVG 132 (171)
T ss_pred HHC---CCCEEEEec
Confidence 332 345555433
No 344
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=40.63 E-value=1.8e+02 Score=31.27 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=41.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG-----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G-----yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----GleLl~~IR 155 (780)
.+|.+||-++.+.+..+..|...+ -++. ...++.+.++.. ...||+||+|. -|... ..++++.++
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~ 173 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPVGPAETLFTKEFYELLK 173 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCCCcccchhHHHHHHHHH
Confidence 479999999999988888875432 1222 345665555433 35799999998 55322 234555554
No 345
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=40.59 E-value=41 Score=34.49 Aligned_cols=87 Identities=11% Similarity=0.242 Sum_probs=45.3
Q ss_pred hCCCEEEE------ECCHHHHHHHHHhcCCCceEEEEccCCCCCH-------HHHHHHHHhhcCCCCccEEEEecCCCHH
Q 004001 109 NCGYEVTE------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSG-------VALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (780)
Q Consensus 109 ~~GyeV~~------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdG-------leLl~~IRs~~~~~~iPIIvLSa~~~~e 175 (780)
..|++++- +.-..+..++|.+ .+.|++++|+.|.++- ..+++.||+ ..|++|||+++......
T Consensus 31 ~l~~~~iNLGfsG~~~le~~~a~~ia~--~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~--~hP~tPIllv~~~~~~~ 106 (178)
T PF14606_consen 31 RLGLDVINLGFSGNGKLEPEVADLIAE--IDADLIVLDCGPNMSPEEFRERLDGFVKTIRE--AHPDTPILLVSPIPYPA 106 (178)
T ss_dssp HHT-EEEEEE-TCCCS--HHHHHHHHH--S--SEEEEEESHHCCTTTHHHHHHHHHHHHHT--T-SSS-EEEEE----TT
T ss_pred HcCCCeEeeeecCccccCHHHHHHHhc--CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEecCCccc
Confidence 34777762 1223455667766 5679999998333332 357788865 45899999998543221
Q ss_pred HHHHHHHCCCCeEEeC--CCCHHHHHHHHHHHHHHhc
Q 004001 176 LVFKCLSKGAVDFLVK--PIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 176 ~~~~al~aGAddyL~K--P~~~eeL~~~L~~llrr~~ 210 (780)
+++.. -....+....++.+++...
T Consensus 107 -----------~~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 107 -----------GYFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp -----------TTS--TTS--HHHHHHHHHHHHHHHH
T ss_pred -----------cccCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2345677777777776653
No 346
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.48 E-value=4.7e+02 Score=27.65 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=63.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccC--CCCCHHHHHHHHHhhcCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVM--PCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDiM--P~mdGleLl~~IRs~~~~ 160 (780)
.++++|+.+.+. ...+..++++.+. .|.... +..+..+++.. .|++|+-.. .+.-|+.+++.+.
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~----- 287 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA----- 287 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH-----
Confidence 466777766543 3345555544443 344332 34445555543 466665332 2334677788773
Q ss_pred CCccEEEEecCCCHHHHHHHHH-CCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLS-KGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~-aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+.-.....+ .+. .|..+|+..|-+.++|...|..++.
T Consensus 288 ~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 288 FGKPVISTEIGTGGS----YVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred cCCCEEecCCCCchh----HHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 357887532222222 233 4778999999999999999999875
No 347
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=40.39 E-value=3.3e+02 Score=31.75 Aligned_cols=101 Identities=13% Similarity=0.271 Sum_probs=61.1
Q ss_pred ccEEEEEeC---CHH-HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCH
Q 004001 87 SLKVLLVEN---DDS-TRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSG 147 (780)
Q Consensus 87 ~lrVLIVDD---D~~-~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------mdG 147 (780)
++.+++||- +.. ..+.++.+-+.+ ...|. .+.+.++|..++.. ..|.|.+-+-|+ ..-
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p~ 312 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVPQ 312 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCccH
Confidence 567888886 433 333344433332 33433 47788888887763 467775432121 112
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.++..+........+|||+--+-....++.+|+.+||+.++.
T Consensus 313 ~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 313 ITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444322222468988877888899999999999998885
No 348
>PRK04457 spermidine synthase; Provisional
Probab=40.33 E-value=2.3e+02 Score=30.49 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-C----CCHHHHHHHHHh
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-C----LSGVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G--yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~----mdGleLl~~IRs 156 (780)
..+|.+||=|+.+.+..+..+...+ -++. ...|+.+.+... ...||+||+|. -. . +.-.++++.+++
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 4689999999999999888875432 2343 456777666533 25799999996 32 1 123466777654
No 349
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.33 E-value=2.2e+02 Score=31.28 Aligned_cols=90 Identities=18% Similarity=0.062 Sum_probs=57.7
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 90 VLLVENDDSTRHVVAALLR----NCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~----~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|||-|.+-...-.+...++ ...+ .| +.+.+.+++++.++ ..+|+|++|-|.-.+--++++.++ ..
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~---~gaDiI~LDn~s~e~l~~av~~~~-----~~ 238 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALE---LGVDAVLLDNMTPDTLREAVAIVA-----GR 238 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHhC-----CC
Confidence 6666665444332333332 3342 23 48999999999996 468999999853323333333332 22
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
. +|..|+.-..+.+.+....|+|-+
T Consensus 239 ~-~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 239 A-ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred c-eEEEECCCCHHHHHHHHhcCCCEE
Confidence 3 378888889999999999998654
No 350
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.31 E-value=1.9e+02 Score=32.54 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~~----r~~L~~lL~~~GyeV~~A~d---------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|||||-|.... .+.+...|+..|+++..+.. ..++++.+++ ..+|+||- +-+.+-+++.+.+
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~IIa--iGGGS~~D~aK~i 102 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRE--NGCDAILA--VGGGSVIDCAKAI 102 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHHH
Confidence 489999876443 34567778777877765532 4567777776 67898764 4555556655554
No 351
>PRK10742 putative methyltransferase; Provisional
Probab=40.30 E-value=1.5e+02 Score=32.09 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=39.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNC------GY----EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~------Gy----eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~ 144 (780)
+.+|.+||-++.+..+|..-|+.. +. ++. ...+..+.|..+ ...||+|++|- -|.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPH 176 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCC
Confidence 567999999999999999999874 21 232 345555555543 34699999998 454
No 352
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=40.30 E-value=3.5e+02 Score=28.27 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=59.9
Q ss_pred cEEEEEeCC----HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc---CC----CCCHHHHHHHHH
Q 004001 88 LKVLLVEND----DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV---MP----CLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD----~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi---MP----~mdGleLl~~IR 155 (780)
..|+-+|-- |.....|-..++..+.-+. -+.+.+|++...+. .+|+|=+=+ -| ...-++|+++|.
T Consensus 65 adIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~ 141 (192)
T PF04131_consen 65 ADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELV 141 (192)
T ss_dssp -SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHH
Confidence 346666632 2233444444555543332 57899999988874 689886643 12 223588999996
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+. .+|||+=-...+++.+.+++++||+..++
T Consensus 142 ~~----~~pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 142 QA----DVPVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp HT----TSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred hC----CCcEeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 52 68888878888999999999999999876
No 353
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=40.19 E-value=5.2e+02 Score=29.78 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEEEcc-C----CCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 102 VVAALLRNCGYEVTE----ATNGLQAWKILEDLTNHIDLVLTEV-M----PCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~----A~dg~eALe~L~~~~~~pDLVLlDi-M----P~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
.+...+++.|..+.. +.+..+.+..+.+ ...|.|.+.. . ....+++.+++++.. ..+||++.-+-
T Consensus 98 ~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~---~~iPI~a~GGI- 171 (430)
T PRK07028 98 DAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEE---VSIPIAVAGGL- 171 (430)
T ss_pred HHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhh---CCCcEEEECCC-
Confidence 344555567876654 2233333333333 3477776553 2 224567888888753 24888877665
Q ss_pred CHHHHHHHHHCCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 004001 173 SMGLVFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL-----~KP~~~eeL~~~L~~llrr 208 (780)
..+...+++.+||+.++ .+.-++.+....++.++++
T Consensus 172 ~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 172 DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 56778899999999664 4555677776666666554
No 354
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=40.15 E-value=40 Score=28.21 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=24.4
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceee
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDG 54 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg 54 (780)
..++.++++++..+||.+.+.+..+.|..+.
T Consensus 70 g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~ 100 (103)
T cd00075 70 GLGLSIVKKLVELHGGRIEVESEPGGGTTFT 100 (103)
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCcEEEE
Confidence 4458899999999999999987775555543
No 355
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=39.95 E-value=86 Score=38.85 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=49.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CC-CCHHHHHHHHHhhcCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PC-LSGVALLSKIMSHKTR 160 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--M-P~-mdGleLl~~IRs~~~~ 160 (780)
....+|||||-...+...|..+|+..|+++.++.... ..+.+.. ..||.||+-- + |. .+-.++++++. .
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~----~ 586 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAAL----A 586 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHH----H
Confidence 4567999999988888999999999999988765432 1222322 4588877721 2 21 11233444432 2
Q ss_pred CCccEEEEe
Q 004001 161 KNLPVIMMS 169 (780)
Q Consensus 161 ~~iPIIvLS 169 (780)
..+||+-+.
T Consensus 587 ~~iPvLGIC 595 (717)
T TIGR01815 587 RGLPVFGVC 595 (717)
T ss_pred CCCCEEEEC
Confidence 468988775
No 356
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=39.82 E-value=2.5e+02 Score=30.46 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHH
Q 004001 101 HVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~ 176 (780)
..|..+-..+|.++. .+.+.+|+...+. ...+||=+.. +-... -++...+|... ...++.+|.-|+-...++
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~---~~a~iiGINnRdL~tf~vd~~~~~~l~~~-ip~~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALE---AGADIIGINNRDLKTFEVDLNRTEELAPL-IPKDVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHH---TT-SEEEEESBCTTTCCBHTHHHHHHHCH-SHTTSEEEEESS-SSHHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHH---cCCCEEEEeCccccCcccChHHHHHHHhh-CccceeEEeecCCCCHHH
Confidence 455555567899876 8999999877775 3567776664 44332 24445555422 123466777788888999
Q ss_pred HHHHHHCCCCeEEeC
Q 004001 177 VFKCLSKGAVDFLVK 191 (780)
Q Consensus 177 ~~~al~aGAddyL~K 191 (780)
+.++..+|++.+|+-
T Consensus 224 ~~~l~~~G~davLVG 238 (254)
T PF00218_consen 224 ARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHCTTT-SEEEES
T ss_pred HHHHHHCCCCEEEEC
Confidence 999999999999973
No 357
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=39.71 E-value=1.4e+02 Score=32.00 Aligned_cols=54 Identities=9% Similarity=0.231 Sum_probs=41.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~---~~~pDLVLlDi 141 (780)
.+|.-+|-++.....-+..|+..|+ .|. ...+..+.|..+... ...||+||+|.
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecC
Confidence 3799999999999999999999986 344 566777777766431 14799999997
No 358
>PLN02775 Probable dihydrodipicolinate reductase
Probab=39.66 E-value=3.9e+02 Score=29.56 Aligned_cols=101 Identities=12% Similarity=0.180 Sum_probs=54.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEE----------------------E--CCHHHHHHHHHhcCCCceEEEEcc-C
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTE----------------------A--TNGLQAWKILEDLTNHIDLVLTEV-M 142 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~----------------------A--~dg~eALe~L~~~~~~pDLVLlDi-M 142 (780)
++|+|..---..-..+...+...+++++. . .+.+++|..+.. ..+|+|++|. .
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~--~~~~~VvIDFT~ 89 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA--EYPNLIVVDYTL 89 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc--cCCCEEEEECCC
Confidence 46666666555544444444335555442 2 455556655543 4699999999 8
Q ss_pred CCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC-CCCeEEeCCCCH
Q 004001 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-GAVDFLVKPIRK 195 (780)
Q Consensus 143 P~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a-GAddyL~KP~~~ 195 (780)
|.. .++.++...+ ..+|+|+=|.--+.+...+..+. ++--++.-.|++
T Consensus 90 P~a-~~~~~~~~~~----~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 90 PDA-VNDNAELYCK----NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred hHH-HHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 863 3445555533 24666665544444444443333 544455545554
No 359
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=39.59 E-value=2.9e+02 Score=29.46 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=61.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++++||.+-+. ...+...++..+. .|....-.++..+++.. .|++|+-...+.-|+-+++.+. ..+|
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~E~~~~~~lEAma-----~G~P 292 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLYEGLPLVLIEAQA-----SGLP 292 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccccCCCHHHHHHHH-----hCCC
Confidence 456777765443 3344555555443 34333333444455543 5676654422334677787773 4578
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||+ |...... +.+..+ ..|+..+-++++|.++|..++..
T Consensus 293 vI~-s~~~~~~---~~i~~~-~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 293 CIL-SDTITKE---VDLTDL-VKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred EEE-EcCCchh---hhhccC-ccEEeCCCCHHHHHHHHHHHHhC
Confidence 875 4433322 233333 46777777899999999998764
No 360
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=39.31 E-value=4e+02 Score=28.65 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecC----CCHHH-HHHHHHCCCCeEEeCCC--CHHHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSL----DSMGL-VFKCLSKGAVDFLVKPI--RKNELKNLWQHVWR 207 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~----~~~e~-~~~al~aGAddyL~KP~--~~eeL~~~L~~llr 207 (780)
+..+++.+. ..+|||++... ..... .....+.| .+++..+- +.++|..+|..++.
T Consensus 262 ~~t~~Eam~-----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g-~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 262 ASTVAELAA-----LGLPAILIPLPYAADDHQTANARALVKAG-AAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred HhHHHHHHH-----hCCCEEEeecCCCCCCcHHHhHHHHHhCC-CEEEEecCCCCHHHHHHHHHHHhc
Confidence 344556552 45788876422 11112 22333444 57888774 89999999988864
No 361
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.26 E-value=1.3e+02 Score=32.70 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhhcCCCCccEEEEecCC------CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 146 SGVALLSKIMSHKTRKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPIIvLSa~~------~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
+.++++++||. ...+|+|+|+-+. -.....+|.++|++++|.--+..+|....+..+
T Consensus 78 ~~~~~~~~~r~---~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNG---EIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhc---CCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 35777778863 2678999998764 245688899999999999888888766555554
No 362
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.12 E-value=1.7e+02 Score=32.09 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=62.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEc---cC-C------CCCH----
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-----EATNGLQAWKILEDLTNHIDLVLTE---VM-P------CLSG---- 147 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-----~A~dg~eALe~L~~~~~~pDLVLlD---iM-P------~mdG---- 147 (780)
.-|||=+|-|+..+.....+-++.|..+. .-.-.+...++|++ ..||||++- .+ - +++.
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViTGHD~~~K~~~d~~dl~~YrnS 181 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE--VRPDILVITGHDAYSKNKGNYMDLNAYRHS 181 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH--hCCCEEEEeCchhhhcCCCChhhhhhhhhh
Confidence 45899999999999998888888876554 33455667778877 789987762 22 1 1111
Q ss_pred ---HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 004001 148 ---VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 148 ---leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
++.++..|......+- .|++.+.. ....+..+++||+ |-.-|
T Consensus 182 kyFVeaVk~aR~y~~~~D~-LVIFAGAC-QS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 182 KYFVETVREARKYVPSLDQ-LVIFAGAC-QSHFESLIRAGAN-FASSP 226 (283)
T ss_pred HHHHHHHHHHHhcCCCccc-EEEEcchh-HHHHHHHHHcCcc-ccCCc
Confidence 2445555543322333 33333333 3456678899985 54444
No 363
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.05 E-value=1.1e+02 Score=30.67 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=48.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEATN-------GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~~A~d-------g~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
...+|.++-..+.+.+.+...|++. |..|+-+.+ .++.++.+.. ..+||||+-+ +|... .++.+++
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHH
Confidence 4579999999999998888888876 667764443 3445666665 7899999999 88754 3455554
Q ss_pred h
Q 004001 156 S 156 (780)
Q Consensus 156 s 156 (780)
.
T Consensus 123 ~ 123 (172)
T PF03808_consen 123 Q 123 (172)
T ss_pred H
Confidence 3
No 364
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=38.99 E-value=1.6e+02 Score=33.26 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=41.2
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~~-----r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-|+|||-|.... .+.+...|+..|+++..+. +..++++.+++ ..+|+||- +-+.+-+++.+.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGRE--FGAQAVIA--IGGGSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHH--cCCCEEEE--eCCccHHHHHHH
Confidence 479999887543 3568888888888776654 23456666665 56888764 445555555554
Q ss_pred H
Q 004001 154 I 154 (780)
Q Consensus 154 I 154 (780)
+
T Consensus 103 i 103 (383)
T cd08186 103 A 103 (383)
T ss_pred H
Confidence 4
No 365
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.98 E-value=3.8e+02 Score=28.13 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=51.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEE-Ecc-------------------CCCC
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTE----ATNGLQAWKILEDLTNHIDLVL-TEV-------------------MPCL 145 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~----A~dg~eALe~L~~~~~~pDLVL-lDi-------------------MP~m 145 (780)
.+|-.++......+.+.|...|++++. ...+.++++.+++ ..++++| .+. .|..
T Consensus 19 aV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~--~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~ 96 (212)
T PRK05718 19 PVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK--EVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL 96 (212)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH--HCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC
Confidence 345556666666677777777886653 3356667777765 3356544 222 2555
Q ss_pred CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 004001 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
+- ++++..++. .+ .++-+-.+...+.+++++|++-+-.-|
T Consensus 97 ~~-~vi~~a~~~----~i--~~iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 97 TP-PLLKAAQEG----PI--PLIPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CH-HHHHHHHHc----CC--CEeCCCCCHHHHHHHHHCCCCEEEEcc
Confidence 54 555554331 22 233333344456667777776554444
No 366
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=38.84 E-value=2.9e+02 Score=30.23 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=47.7
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVENDD----STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVDDD~----~~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
.+|.|+-+|. .....++..|+..|.+|+. ..|....+..++. ..+|+||+- ....+...+++.+++
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~--~~pd~v~~~-~~~~~~~~~~~~~~~ 210 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKA--AKPDVVVST-VNGDSNVAFFKQLKA 210 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHH--hCCCEEEEe-ccCCchHHHHHHHHH
Confidence 3566664443 4556677788888988763 2244555666665 579998863 334456888899986
Q ss_pred hcCCCC-ccEEE
Q 004001 157 HKTRKN-LPVIM 167 (780)
Q Consensus 157 ~~~~~~-iPIIv 167 (780)
....+. ++++.
T Consensus 211 ~G~~~~~~~~~~ 222 (348)
T cd06355 211 AGITASKVPVLS 222 (348)
T ss_pred cCCCccCCeeEE
Confidence 654332 44443
No 367
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.51 E-value=2.1e+02 Score=31.74 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=59.2
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHH----------------HhcCCCceEEEEccCCCCCH
Q 004001 89 KVLLV--ENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKIL----------------EDLTNHIDLVLTEVMPCLSG 147 (780)
Q Consensus 89 rVLIV--DDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~L----------------~~~~~~pDLVLlDiMP~mdG 147 (780)
+|.|| .+.+. ....|...|...|+++.......+.+... ......+|+||+ -+.||
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---iGGDG 79 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV---LGGDG 79 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE---EeCcH
Confidence 46666 22332 34556667778899888655433222100 110123566664 36677
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.+|+..|... ...+||+-+-. |=.+||. .+.++++...|.++++.
T Consensus 80 -TlL~aar~~~-~~~iPilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 80 -TVLSAARQLA-PCGIPLLTINT-------------GHLGFLT-EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred -HHHHHHHHhc-CCCCcEEEEeC-------------CCCcccc-cCCHHHHHHHHHHHHcC
Confidence 3555554322 35789887642 5567887 46789999999998754
No 368
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=38.48 E-value=1.9e+02 Score=29.07 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=51.9
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCC-------CHHHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 103 VAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-------SGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 103 L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m-------dGleLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
.+.+|....+--..+.+.+++.+..+ ..+|.|++-. .|.. -|++.++++++. ..+||++|-+-. .
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~---~~~pv~AlGGI~-~ 160 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA---SPIPVYALGGIT-P 160 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH---TSSCEEEESS---T
T ss_pred hhhhcccceEEEeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHh---CCCCEEEEcCCC-H
Confidence 34444433333347889999666554 4578899886 4433 388888888654 348999998764 4
Q ss_pred HHHHHHHHCCCCeEE
Q 004001 175 GLVFKCLSKGAVDFL 189 (780)
Q Consensus 175 e~~~~al~aGAddyL 189 (780)
+.+..+.+.||+++-
T Consensus 161 ~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 161 ENIPELREAGADGVA 175 (180)
T ss_dssp TTHHHHHHTT-SEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 567788999998874
No 369
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.45 E-value=1.2e+02 Score=35.07 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 132 NHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 132 ~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
...|+|++|. -+ ...-++++++||+. +|+++|| +..-...+....++++|||.+.
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 4699999999 65 34567889999653 4677644 4455567888899999998765
No 370
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=38.30 E-value=2.1e+02 Score=32.03 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=42.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCEEEEEC-----------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 89 KVLLVENDDSTRHVVAALLR---NCGYEVTEAT-----------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~---~~GyeV~~A~-----------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
+|.||=|+..-...+..+++ ..|++|.... +....|..++. ..+++||+|.- ..+...+++++
T Consensus 120 ~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~--~~~~~Iil~~~-~~~~~~il~qa 196 (370)
T cd06389 120 KFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLEN--KKERRVILDCE-RDKVNDIVDQV 196 (370)
T ss_pred EEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhcc--ccceEEEEECC-HHHHHHHHHHH
Confidence 34433334355555555544 4577765222 33344555544 57899999872 23467788888
Q ss_pred HhhcCCCCccEEEEecC
Q 004001 155 MSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~ 171 (780)
++......--..+++..
T Consensus 197 ~~~gm~~~~y~~il~~~ 213 (370)
T cd06389 197 ITIGKHVKGYHYIIANL 213 (370)
T ss_pred HHhCccccceEEEEccC
Confidence 76554333223345554
No 371
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=38.22 E-value=5.2e+02 Score=27.55 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=48.6
Q ss_pred EEEEE-eCCHHH---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 89 KVLLV-ENDDST---RHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIV-DDD~~~---r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
+|.+| .+.... ...+...|++.|+++.. ..+....+..+++ ..||+|++- ....+...+++.+++.
T Consensus 136 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~--~~pd~v~~~-~~~~~~~~~~~~~~~~ 212 (336)
T cd06360 136 KVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPD--DVPDAVFVF-FAGGDAIKFVKQYDAA 212 (336)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHh--cCCCEEEEe-cccccHHHHHHHHHHc
Confidence 45544 444433 34566777788887652 3455667777776 678998863 3345567788888765
Q ss_pred cCCCCccEEEEec
Q 004001 158 KTRKNLPVIMMSS 170 (780)
Q Consensus 158 ~~~~~iPIIvLSa 170 (780)
....++|++-.+.
T Consensus 213 g~~~~~~~~~~~~ 225 (336)
T cd06360 213 GLKAKIPLIGSGF 225 (336)
T ss_pred CCccCCeEEeccc
Confidence 5433566654433
No 372
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=38.21 E-value=85 Score=31.89 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
|||||----+...+.+.|++.|+++..+.+..+ + ..+|.||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l----~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I----LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h----ccCCEEEE
Confidence 689998888899999999999999998886543 2 24788886
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=38.09 E-value=1.6e+02 Score=28.94 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CHHHH----HHHHHhcCCCceEEEEccCCC--C--CHHHHHH
Q 004001 87 SLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NGLQA----WKILEDLTNHIDLVLTEVMPC--L--SGVALLS 152 (780)
Q Consensus 87 ~lrVLIVDDD~~~r---~~L~~lL~~~GyeV~~A~---dg~eA----Le~L~~~~~~pDLVLlDiMP~--m--dGleLl~ 152 (780)
+.+|++|+-|..-. +.+...++..|..+.... +..+. +..+.. ..+|+||+|.-+. . ..++.+.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt~g~~~~~~~~l~~l~ 105 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDTAGRLQIDENLMEELK 105 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEECcccchhhHHHHHHHH
Confidence 56899999775322 223333445566655432 33322 233333 5789999997211 1 2344444
Q ss_pred HHHhhcCCCCccEEEEecCCC
Q 004001 153 KIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvLSa~~~ 173 (780)
.+... ..+...++++.+...
T Consensus 106 ~l~~~-~~~~~~~lVv~~~~~ 125 (173)
T cd03115 106 KIKRV-VKPDEVLLVVDAMTG 125 (173)
T ss_pred HHHhh-cCCCeEEEEEECCCC
Confidence 44321 124445566655443
No 374
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=38.08 E-value=57 Score=38.82 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=47.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+|||||....+-..|..+|++.|+. |........-++.+.. ..||.||+-- -|..++.. ++.|+. ....+|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~p~~~~~~-~~li~~--~~~~~P 75 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGRPEEAGIS-VEVIRH--FSGKVP 75 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCChhhCCcc-HHHHHH--hhcCCC
Confidence 3999999999999999999999985 6655322222344433 4688887753 23333322 233322 124688
Q ss_pred EEEEe
Q 004001 165 VIMMS 169 (780)
Q Consensus 165 IIvLS 169 (780)
|+-+.
T Consensus 76 vLGIC 80 (534)
T PRK14607 76 ILGVC 80 (534)
T ss_pred EEEEc
Confidence 88775
No 375
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=37.97 E-value=4.1e+02 Score=28.97 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHH
Q 004001 101 HVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~ 176 (780)
..|...-..+|+++. .+.|.+|+-+.+.. ...||=++. +-... .++...+|... ...+..+|.-|+-...+.
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~---ga~iIGINnRdL~tf~vdl~~t~~la~~-~p~~~~~IsESGI~~~~d 221 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKL---GAKIIGINNRDLTTLEVDLETTEKLAPL-IPKDVILISESGISTPED 221 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhC---CCCEEEEeCCCcchheecHHHHHHHHhh-CCCCcEEEecCCCCCHHH
Confidence 344455567799876 78898888877763 345554433 32221 23445555322 123355666677888999
Q ss_pred HHHHHHCCCCeEEe
Q 004001 177 VFKCLSKGAVDFLV 190 (780)
Q Consensus 177 ~~~al~aGAddyL~ 190 (780)
+.+....||++||+
T Consensus 222 v~~l~~~ga~a~LV 235 (254)
T COG0134 222 VRRLAKAGADAFLV 235 (254)
T ss_pred HHHHHHcCCCEEEe
Confidence 99999999999997
No 376
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=37.96 E-value=3.5e+02 Score=30.65 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCCC-HHHHHHHHHhh----cC-CCCccEEEEec
Q 004001 100 RHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSH----KT-RKNLPVIMMSS 170 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~md-GleLl~~IRs~----~~-~~~iPIIvLSa 170 (780)
...|..+-+.+|.++. .+.+.+|+-..+.. ...+||=+.- +-... -++...+|... .. ..++.+|.-|+
T Consensus 219 L~~l~~~A~~LGme~LVEVH~~~ElerAl~~--~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESG 296 (338)
T PLN02460 219 IKYMLKICKSLGMAALIEVHDEREMDRVLGI--EGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESG 296 (338)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCC
Confidence 4445555567899876 89999998777763 2467776654 43322 24455555331 11 12333444466
Q ss_pred CCCHHHHHHHHHCCCCeEEe
Q 004001 171 LDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~ 190 (780)
-...+++..+..+|++.+|+
T Consensus 297 I~t~~Dv~~l~~~GadAvLV 316 (338)
T PLN02460 297 LFTPDDVAYVQNAGVKAVLV 316 (338)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 77888999999999999987
No 377
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=37.91 E-value=54 Score=33.21 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-CCC---CHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 101 HVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PCL---SGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-M-P~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
..|.. |+..|+.+. -+..+...+..+.. ..||.|-+|. + ..+ ....+++.|........+ -|++.+-.+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~--l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLAS--LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGI-KVIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHH--HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT--EEEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhh--cccccceeecccccccchhhHHHHHHHHHHHhhcccc-ccceeecCC
Confidence 44554 778899876 45556666777766 5799999997 4 322 233455544322212234 455777788
Q ss_pred HHHHHHHHHCCCCe
Q 004001 174 MGLVFKCLSKGAVD 187 (780)
Q Consensus 174 ~e~~~~al~aGAdd 187 (780)
.+....+.+.|++-
T Consensus 214 ~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 214 EEQLELLKELGVDY 227 (236)
T ss_dssp HHHHHHHHHTTESE
T ss_pred HHHHHHHHHcCCCE
Confidence 88899999999863
No 378
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=37.79 E-value=3.5e+02 Score=28.07 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=39.7
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+-...+.-|.-+++.+. ..+|||+ +..... .+.+.. .+++.++-+.++|...|..++.
T Consensus 269 adi~v~ps~~e~~~~~~~Ea~a-----~g~PvI~-~~~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~ 331 (365)
T cd03807 269 LDVFVLSSLSEGFPNVLLEAMA-----CGLPVVA-TDVGDN---AELVGD--TGFLVPPGDPEALAEAIEALLA 331 (365)
T ss_pred CCEEEeCCccccCCcHHHHHHh-----cCCCEEE-cCCCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHh
Confidence 4666654422334566777773 3578775 333322 222333 5789999999999999998875
No 379
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.68 E-value=1.5e+02 Score=31.27 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcC--CCCccEEEE
Q 004001 102 VVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVIMM 168 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~A~dg---~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~~--~~~iPIIvL 168 (780)
.+-..+++.|..+-.+-+. .+.++.+. ...|+||+=. -|+..| ++-++++++... ..++||.+.
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd 173 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID 173 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 3445567778876654433 34444332 2467776633 677655 344555554321 124666654
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHH
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVW 206 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~ll 206 (780)
- --..+.+..+.++||+.++. +.-++.+....++..+
T Consensus 174 G-GI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 174 G-GVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred C-CCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 4 44578888999999998753 4334444444444433
No 380
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=37.64 E-value=1.3e+02 Score=30.38 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEE--ecCCCHHHHHHHHHCCCCeEEeCCC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLVKPI 193 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvL--Sa~~~~e~~~~al~aGAddyL~KP~ 193 (780)
+.++++++++.....+++|=+.+ +--..|+++++.||+. .+++||++. ...........+.++|++.++.-..
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~--~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA--FPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH--CCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 45555555554222233332221 1123467888888754 245677663 2222223456778889877665433
No 381
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=37.55 E-value=3.5e+02 Score=28.93 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=48.7
Q ss_pred cEEEEE-eCCH---HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDD---STRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~---~~r~~L~~lL~~~GyeV~~A-------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
.+|.+| +|+. .....+...+++.|.++... .+....+..+.. ..+|+||+-. .+...+.+++.+++
T Consensus 137 ~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~--~~~dav~~~~-~~~~a~~~i~~~~~ 213 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA--ARPQAVIMVG-AYKAAAAFIRALRK 213 (336)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh--cCCCEEEEEc-CcHHHHHHHHHHHh
Confidence 356555 4432 33455667777778754321 356666666665 4589888754 22356778888876
Q ss_pred hcCCCCccEEEEecCCCH
Q 004001 157 HKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~ 174 (780)
.. ..+||+.++.....
T Consensus 214 ~G--~~~~~~~~~~~~~~ 229 (336)
T cd06326 214 AG--GGAQFYNLSFVGAD 229 (336)
T ss_pred cC--CCCcEEEEeccCHH
Confidence 54 45677766554433
No 382
>PRK00654 glgA glycogen synthase; Provisional
Probab=37.50 E-value=4.8e+02 Score=30.12 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVEND-DSTRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD-~~~r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++|+.+- +.....+..+.++.+-.+.. .-+.+.+-.++. ..|++|+=..-+.-|+.+++.+. ..+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS~~E~~gl~~lEAma-----~G~ 381 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPSRFEPCGLTQLYALR-----YGT 381 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCCCCCCchHHHHHHHH-----CCC
Confidence 4567777653 34455666666666544432 223222323343 35777764333445677777763 235
Q ss_pred cEEEEecCCCHHHHHHHHHCC------CCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKG------AVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aG------AddyL~KP~~~eeL~~~L~~llrr 208 (780)
|+|+ +..... .+.+..| ..+|+..|-++++|...|.+++..
T Consensus 382 p~V~-~~~gG~---~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~ 428 (466)
T PRK00654 382 LPIV-RRTGGL---ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALEL 428 (466)
T ss_pred CEEE-eCCCCc---cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 6654 332221 1222333 679999999999999999988754
No 383
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=37.45 E-value=1.3e+02 Score=31.83 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEE-ccCCCCCHHH-------HHHHHHhhcCCCCccEEEE
Q 004001 101 HVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVLT-EVMPCLSGVA-------LLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~A----~dg~eALe~L~~~~~~pDLVLl-DiMP~mdGle-------Ll~~IRs~~~~~~iPIIvL 168 (780)
......+++.|..+-.+ .+.+++..+++. ...|+|++ ..-|+.+|.. -+++|++. .+. -.|.+
T Consensus 104 ~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~--~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~--~~~-~~I~V 178 (228)
T PTZ00170 104 KAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT--DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKR--YPH-LNIQV 178 (228)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc--chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHh--ccc-CeEEE
Confidence 34445556677665433 344444444422 34676654 2267776643 33444332 222 34667
Q ss_pred ecCCCHHHHHHHHHCCCCeEE-----eCCCCHHHHHHHHHHHHHH
Q 004001 169 SSLDSMGLVFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL-----~KP~~~eeL~~~L~~llrr 208 (780)
.+--..+.+..+.++||+-++ .+--++.+-...|+..++.
T Consensus 179 dGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 179 DGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 777788889999999998664 3433565655555555543
No 384
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.44 E-value=4.3e+02 Score=28.46 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
....++..|++.|+++.. ..+....+..+.. ..||+||+-. .......+++.+++.. ..+|+++....
T Consensus 149 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~--~~pdaV~~~~-~~~~a~~~~~~~~~~G--~~~~~~~~~~~ 223 (341)
T cd06341 149 AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA--AGADAIITVL-DAAVCASVLKAVRAAG--LTPKVVLSGTC 223 (341)
T ss_pred HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh--cCCCEEEEec-ChHHHHHHHHHHHHcC--CCCCEEEecCC
Confidence 345567777788876542 1456667777765 5799988643 3336788899997654 45676665544
Q ss_pred CCHHH
Q 004001 172 DSMGL 176 (780)
Q Consensus 172 ~~~e~ 176 (780)
.+.+.
T Consensus 224 ~~~~~ 228 (341)
T cd06341 224 YDPAL 228 (341)
T ss_pred CCHHH
Confidence 44443
No 385
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.42 E-value=86 Score=33.23 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCC-CH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPCL-SG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~m-dG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+.++.+... .--.+|++|+ .-++ .| +++++.+.+. ..+|||+-.+-.+.+.+.++++.|++..+.
T Consensus 151 ~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5556665542 1236899998 6443 44 6778888643 468999998889999999999999999886
No 386
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.35 E-value=1.2e+02 Score=33.12 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
-+++++.+|+. ...+|||+|+-+.. .....+|.++|++++|+--+.+++-. .+....+
T Consensus 81 ~lel~~~~r~~--~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~-~~~~~~~ 144 (265)
T COG0159 81 TLELVEEIRAK--GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD-ELLKAAE 144 (265)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH-HHHHHHH
Confidence 46677777643 47899999987653 34466889999999999766655544 3344343
No 387
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=37.21 E-value=1.9e+02 Score=30.40 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCC-CCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+..+.+.. ....+|++|+ --+ +.| +++++++++. ..+|||+--+-.+.+.+.+++..||+..+.
T Consensus 142 ~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 56666666654 2247899998 533 344 6888888653 468999888888999999999999999875
No 388
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=37.05 E-value=3.4e+02 Score=29.81 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++++++-.++..+..+..++... |+.+..... +...++. ..|++|+. +|.-.++.+ ...+|+|
T Consensus 221 ~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~----~aDl~v~~-----sG~~~lEa~-----a~G~PvI 284 (380)
T PRK00025 221 LRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG--QKREAMA----AADAALAA-----SGTVTLELA-----LLKVPMV 284 (380)
T ss_pred eEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc--cHHHHHH----hCCEEEEC-----ccHHHHHHH-----HhCCCEE
Confidence 45555544444445555555554 444433321 2333333 24666663 366666443 2457888
Q ss_pred EEecCCCHH-HHH------------HHHHC--CCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMG-LVF------------KCLSK--GAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 167 vLSa~~~~e-~~~------------~al~a--GAddyL~KP~~~eeL~~~L~~llr 207 (780)
++-...... ... +.+.. .+..++.+..++++|...|..++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 285 VGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred EEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhc
Confidence 773322111 111 11211 145578889999999999888864
No 389
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=36.95 E-value=3.2e+02 Score=28.81 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=42.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m-dGleLl~~IR 155 (780)
.+|..||-++......+..+...|. .+. ...+..+..... ...||+|++.. +.-+ +-..+++.+.
T Consensus 67 ~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~~ 136 (255)
T PRK11036 67 HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTLW 136 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHHH
Confidence 4799999999999999988887775 233 344555432222 25799999886 5332 3345566664
No 390
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.80 E-value=85 Score=32.18 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=34.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
|+|+|||--.-+...+...|++.|+++..+.+.++ + ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~----~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I----LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h----CCCCEEEE
Confidence 57999998777888889999999999999988743 2 23677764
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.75 E-value=1.2e+02 Score=31.33 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=60.6
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECC---HH----HHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHH
Q 004001 87 SLKVLLVENDD---STRHVVAALLRNCGYEVTEATN---GL----QAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKI 154 (780)
Q Consensus 87 ~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~d---g~----eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~I 154 (780)
+.+|.+|--|. -..+.|+.+-+..|..+..+.. .. ++++.+.. ..+|+||+|. +...+ .+++.+|
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~--~~~D~vlIDT~Gr~~~d-~~~~~el 105 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK--KGYDLVLIDTAGRSPRD-EELLEEL 105 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH--TTSSEEEEEE-SSSSTH-HHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh--cCCCEEEEecCCcchhh-HHHHHHH
Confidence 55677765442 3456677777778888776653 22 34444444 5699999998 33222 2333333
Q ss_pred H---hhcCCCCccEEEEecCCCHHHH---HHHHH-CCCCeEE-eCCCCHHHHHHHHHHH
Q 004001 155 M---SHKTRKNLPVIMMSSLDSMGLV---FKCLS-KGAVDFL-VKPIRKNELKNLWQHV 205 (780)
Q Consensus 155 R---s~~~~~~iPIIvLSa~~~~e~~---~~al~-aGAddyL-~KP~~~eeL~~~L~~l 205 (780)
+ ... .+.-.++++++....+.. ...++ .+.+.+| +|=-....+-.++.-+
T Consensus 106 ~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~ 163 (196)
T PF00448_consen 106 KKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLA 163 (196)
T ss_dssp HHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHH
T ss_pred HHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHH
Confidence 2 222 344456777776655443 33333 4677664 4533333333444433
No 392
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=36.70 E-value=4.5e+02 Score=29.84 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-------CCCCC-----H
Q 004001 87 SLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-------MPCLS-----G 147 (780)
Q Consensus 87 ~lrVLIVDDD----~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-------MP~md-----G 147 (780)
.+.+++||-- ..+.+.++.+=+.+ +..|+ -+.+.+.|.+++.. ..|.|.+-+ --..+ -
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 3567888743 33444444444444 34444 25678888887763 578887662 11122 2
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
+.++..+........+|||+-.+-....++.+|+.+||+..+.=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 34444444333334789999999999999999999999998875
No 393
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=36.69 E-value=2.4e+02 Score=31.70 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCEEEE--EC-----CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004001 101 HVVAALLRNCGYEVTE--AT-----NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~--A~-----dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~ 158 (780)
+.|...++..|.+|.. +. +....|..++. ..+|.||+|+.+. ....+++++++..
T Consensus 141 q~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~--~~~~~iil~~~~~-~~~~il~qa~~~g 202 (371)
T cd06388 141 QAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDR--RQEKKFVIDCEIE-RLQNILEQIVSVG 202 (371)
T ss_pred HHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcc--cccEEEEEECCHH-HHHHHHHHHHhcC
Confidence 3444445555776653 21 22333444443 5789999997443 3578888887654
No 394
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.68 E-value=3.8e+02 Score=29.19 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=45.5
Q ss_pred EEEEEeCCHH----HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 89 KVLLVENDDS----TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIVDDD~~----~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
+|.||-++.. ..+.+...|++.|++|+. ..+....+..++. ..+|+||+.. ...+...+++.+++.
T Consensus 146 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~--~~~d~v~~~~-~~~~~~~~~~~~~~~ 222 (347)
T cd06340 146 TVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKA--ANPDAILPAS-YTNDAILLVRTMKEQ 222 (347)
T ss_pred eEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHh--cCCCEEEEcc-cchhHHHHHHHHHHc
Confidence 5555544333 334556677788988762 2355566666765 6799998765 334567788888765
Q ss_pred cCCCCccEEEE
Q 004001 158 KTRKNLPVIMM 168 (780)
Q Consensus 158 ~~~~~iPIIvL 168 (780)
.. ..++++.
T Consensus 223 G~--~~~~~~~ 231 (347)
T cd06340 223 RV--EPKAVYS 231 (347)
T ss_pred CC--CCcEEEe
Confidence 42 3344443
No 395
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=36.64 E-value=4.9e+02 Score=28.35 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEecC----CCHH-HHHHHHHCCCCeEEeCCCC--HHHHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSL----DSMG-LVFKCLSKGAVDFLVKPIR--KNELKNLWQHVWR 207 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~----~~~e-~~~~al~aGAddyL~KP~~--~eeL~~~L~~llr 207 (780)
..+++.+. ..+|||++... .... ......+.|+ +++..|-+ +++|.+.|..++.
T Consensus 263 ~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 263 STVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred HHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHHHc
Confidence 44555552 45788877431 2222 2233345554 77776655 8999999998874
No 396
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=36.62 E-value=1.1e+02 Score=38.15 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=48.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-C--CEEEEECCH---HHHHHHHHhcCCCceEEEEcc--C-CCC-CHHHHHHHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-G--YEVTEATNG---LQAWKILEDLTNHIDLVLTEV--M-PCL-SGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-G--yeV~~A~dg---~eALe~L~~~~~~pDLVLlDi--M-P~m-dGleLl~~IR 155 (780)
..++|||||....+-..|..+|+.. | +.|.++... .+.+..+ ..||.||+-- + |.. .-+.++..+.
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l----~~~D~VVIspGPG~p~~~~~~~i~~~i~ 79 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL----PLFDAIVVGPGPGNPNNAQDMGIISELW 79 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh----cCCCEEEECCCCCCccchhhhHHHHHHH
Confidence 4569999999988888888888876 3 555544332 2233222 3588888743 2 221 2245666665
Q ss_pred hhcCCCCccEEEEec
Q 004001 156 SHKTRKNLPVIMMSS 170 (780)
Q Consensus 156 s~~~~~~iPIIvLSa 170 (780)
+......+||+-+.-
T Consensus 80 ~~~~~~~iPvLGICl 94 (742)
T TIGR01823 80 ELANLDEVPVLGICL 94 (742)
T ss_pred HhcccCCCcEEEEch
Confidence 432223589887753
No 397
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=36.57 E-value=52 Score=39.23 Aligned_cols=75 Identities=27% Similarity=0.341 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEcc---CCCCCH--HHHHHHHHhhcC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV---MPCLSG--VALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg---~eALe~L~~~~~~pDLVLlDi---MP~mdG--leLl~~IRs~~~ 159 (780)
.+|||||....+-..|.++|+..|+++.++.+. ...++.+.. ..||.||+-- .|...+ .++++++
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~d~~~~~~i~~~~----- 74 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPSEAGCMPELLTRL----- 74 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChhhCCCCHHHHHHH-----
Confidence 479999999999999999999999888766542 223444443 4577777653 232222 2344333
Q ss_pred CCCccEEEEe
Q 004001 160 RKNLPVIMMS 169 (780)
Q Consensus 160 ~~~iPIIvLS 169 (780)
...+||+-+.
T Consensus 75 ~~~iPILGIC 84 (531)
T PRK09522 75 RGKLPIIGIC 84 (531)
T ss_pred hcCCCEEEEc
Confidence 2358888775
No 398
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=36.52 E-value=5.5e+02 Score=27.30 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=45.7
Q ss_pred EEEEEeCCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 89 KVLLVENDDS----TRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIVDDD~~----~r~~L~~lL~~~GyeV~~A-------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
+|.||-++.. ....++..|+..|++|... .+....+..++. ..+|+||+.. ...+...+++.+++.
T Consensus 137 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~--~~~~~vi~~~-~~~~~~~~~~~~~~~ 213 (334)
T cd06342 137 KVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA--ANPDAVFFGG-YYPEAGPLVRQMRQL 213 (334)
T ss_pred EEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEcC-cchhHHHHHHHHHHc
Confidence 4555544333 3455667777778887632 345566777765 5789998754 334567788888654
Q ss_pred cCCCCccEEEEe
Q 004001 158 KTRKNLPVIMMS 169 (780)
Q Consensus 158 ~~~~~iPIIvLS 169 (780)
. ...++|...
T Consensus 214 g--~~~~~~~~~ 223 (334)
T cd06342 214 G--LKAPFMGGD 223 (334)
T ss_pred C--CCCcEEecC
Confidence 3 344555443
No 399
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=36.34 E-value=95 Score=35.94 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs 156 (780)
.+...||||.-.--+...+.+.|.+.||.|. .+.+.+++..++.. ...|+.+.++ .+...+.+++..+..
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~--~~~d~~~~~v~~~~~~~~d~~~~~~~ 148 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV--FFVDLGLQNVEADVVTAIDILKKLVE 148 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc--cccccccceeeeccccccchhhhhhh
Confidence 3566899999999999999999999999988 68888888888762 3467788888 788888888888854
No 400
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=36.32 E-value=62 Score=33.36 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=42.9
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHH
Q 004001 89 KVLLVEND---------DSTRHVVAALLR-NCGYEVTEATNGLQAW-KILEDLTNHIDLVLTEV-MPC-LSGVALLSKIM 155 (780)
Q Consensus 89 rVLIVDDD---------~~~r~~L~~lL~-~~GyeV~~A~dg~eAL-e~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IR 155 (780)
|||||... +.....|..+|+ ..+|+|....+....- +.| ..+|+||+.. ..+ ++- +..+.|+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 57888766 257788999998 7799999877744321 223 4699999987 542 332 2223332
Q ss_pred hhcCCCCccEEEEe
Q 004001 156 SHKTRKNLPVIMMS 169 (780)
Q Consensus 156 s~~~~~~iPIIvLS 169 (780)
.. .....++|+|=
T Consensus 76 ~~-v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DY-VENGGGLVGLH 88 (217)
T ss_dssp HH-HHTT-EEEEEG
T ss_pred HH-HHcCCCEEEEc
Confidence 21 11346777774
No 401
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=36.28 E-value=3.4e+02 Score=30.03 Aligned_cols=68 Identities=16% Similarity=0.017 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCC--CCHHHHHHHHHhhc--C-CCCccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 120 GLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSHK--T-RKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDiMP~--mdGleLl~~IRs~~--~-~~~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
..+|++.++.....+|+|.+|-|.. .+..++++++++.- . .+++ .|.+|+.-+.+.+.+..+.|+|-|
T Consensus 198 v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 4478887765323589999998641 23455555554321 1 2344 577788888999999999996655
No 402
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.19 E-value=2e+02 Score=31.23 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC-CCCccEEEEecCCCHHHHH
Q 004001 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT-RKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~-~~~iPIIvLSa~~~~e~~~ 178 (780)
...|...|+..|+++. . ..+|+||+ -+.||. +|+.+|.... ...+||+-+-
T Consensus 17 ~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~---iGGDGT-~L~a~~~~~~~~~~iPilGIN--------- 68 (265)
T PRK04885 17 ASKLKKYLKDFGFILD-------------E--KNPDIVIS---VGGDGT-LLSAFHRYENQLDKVRFVGVH--------- 68 (265)
T ss_pred HHHHHHHHHHcCCccC-------------C--cCCCEEEE---ECCcHH-HHHHHHHhcccCCCCeEEEEe---------
Confidence 3445556666677631 1 24688775 356773 4555543221 1578888664
Q ss_pred HHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 179 KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 179 ~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.|=.+||. .+.++++...|.++++.
T Consensus 69 ----~G~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 69 ----TGHLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred ----CCCceecc-cCCHHHHHHHHHHHHcC
Confidence 36678998 68899999999998763
No 403
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=36.18 E-value=78 Score=31.06 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCEEE---EECCHHHHH-HHHHhcCC--CceEEEEcc
Q 004001 99 TRHVVAALLRNCGYEVT---EATNGLQAW-KILEDLTN--HIDLVLTEV 141 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~---~A~dg~eAL-e~L~~~~~--~pDLVLlDi 141 (780)
+...|..+|+++|+++. .+.|..+.+ +.+++... .+|+||+-=
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittG 69 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTG 69 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 56689999999999766 344444433 33443222 689999853
No 404
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=36.13 E-value=1.7e+02 Score=32.24 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=62.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE--E---ECCHHHHHHHHHhcCCCceEEEEc---cC-CC------CCH----
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT--E---ATNGLQAWKILEDLTNHIDLVLTE---VM-PC------LSG---- 147 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~--~---A~dg~eALe~L~~~~~~pDLVLlD---iM-P~------mdG---- 147 (780)
.-|||=+|-|+..+.....+-+++|..+. . -.-++...++|.+ ..||||++= -+ -+ ++.
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViTGHD~~~K~~~d~~dl~~YrnS 182 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE--YRPDILVITGHDGYLKNKKDYSDLNNYRNS 182 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH--cCCCEEEEeCchhhhcCCCChhhhhhhhcc
Confidence 34899999999999998888888887665 2 2334456667776 789987762 22 11 111
Q ss_pred ---HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 004001 148 ---VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 148 ---leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
++.++.+|......+--||+ .+-. ....+..+++||+ |-.-|
T Consensus 183 kyFVeaV~~aR~~ep~~D~LVIf-AGAC-QS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 183 KYFVEAVKEARKYEPNLDDLVIF-AGAC-QSHFEALLEAGAN-FASSP 227 (287)
T ss_pred HHHHHHHHHHHhcCCCcccEEEE-cchh-HHHHHHHHHcCcc-ccCCc
Confidence 24555555443333333443 3333 3456678899985 54444
No 405
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.99 E-value=2.7e+02 Score=29.36 Aligned_cols=67 Identities=9% Similarity=0.194 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEcc--C-CCC-CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 118 TNGLQAWKILEDLTNHID-LVLTEV--M-PCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 118 ~dg~eALe~L~~~~~~pD-LVLlDi--M-P~m-dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+..+..+.+.. . ++ |+++|+ + .+. .-++++++|.+. ..+||++=-+-.+.+.+.+++..|++..+.
T Consensus 30 ~dp~~~a~~~~~--~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSE--Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHH--h-CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 477787777765 3 44 777776 2 222 357888888643 468888877778889999999999998876
No 406
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=35.79 E-value=1.4e+02 Score=31.50 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=41.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEcc
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gye--V~-~A~dg~eALe~L~~~--~~~pDLVLlDi 141 (780)
+|.-+|-++......+..++..|+. |. ...+..+.|..+... ...||+||+|.
T Consensus 95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECC
Confidence 7999999999999999999998873 43 566777777766431 24799999997
No 407
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=35.57 E-value=66 Score=34.30 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=44.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC--G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~--G---yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-----leLl~~IR 155 (780)
.+|-+||=|+.+.++.+..|... + -++. ...|+...|+...+ ..||+||+|+ -|...+ .++.+.++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPDGPAPNLFTREFYQLCK 178 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTTSCGGGGSSHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCCCCcccccCHHHHHHHH
Confidence 47999999999999999988653 1 1232 66777666655432 2799999998 765433 35666554
Q ss_pred h
Q 004001 156 S 156 (780)
Q Consensus 156 s 156 (780)
+
T Consensus 179 ~ 179 (246)
T PF01564_consen 179 R 179 (246)
T ss_dssp H
T ss_pred h
Confidence 3
No 408
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=35.43 E-value=2.4e+02 Score=31.83 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~~----r~~L~~lL~~~GyeV~~A~d---------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|+|||.|.... ...+...|+..|.++..+.. .+++++.++. ..+|+||- +-+.+-+++.+.+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGS~iD~aK~i 104 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK--EGCDFIIS--IGGGSPHDCAKAI 104 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEEEE--eCCcHHHHHHHHH
Confidence 489999876543 34677888887877765543 3456666665 67898874 4566667766665
No 409
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=35.35 E-value=2e+02 Score=32.72 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
+..+-++.|.+ ...|+|++|. -- ...-++++++||+. ++++||| .-.-...+.....+++|||.+.+=
T Consensus 108 ~~~er~~~L~~--agvD~ivID~a~g~s~~~~~~ik~ik~~--~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKK--FPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHH--TT-SEEEEE-SSTTSHHHHHHHHHHHHH--STTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHH--cCCCEEEccccCccHHHHHHHHHHHHHh--CCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 34555555554 5689999998 32 22346788999764 4677766 445567788889999999988764
No 410
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=35.29 E-value=1.3e+02 Score=30.14 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=51.0
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH---HHHHHHHHhhcCCCCccE
Q 004001 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG---VALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 91 LIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdG---leLl~~IRs~~~~~~iPI 165 (780)
||||--..+...|...|++.|+++.......+....+.. ...+|.||+-- +.-.+- .++++++++ ..+||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~----~~~Pi 75 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLED-LDDYDGIIISGGPGSPYDIEGLIELIREARE----RKIPI 75 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHH-TTTSSEEEEECESSSTTSHHHHHHHHHHHHH----TTSEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhh-hcCCCEEEECCcCCccccccccccccccccc----cceEE
Confidence 789999999999999999999877755433332222211 14577666543 322221 233444432 57899
Q ss_pred EEEecCCCHHHHHHHHHCCC
Q 004001 166 IMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGA 185 (780)
+-+.- ....-|...|.
T Consensus 76 lGIC~----G~Q~la~~~G~ 91 (192)
T PF00117_consen 76 LGICL----GHQILAHALGG 91 (192)
T ss_dssp EEETH----HHHHHHHHTTH
T ss_pred EEEee----hhhhhHHhcCC
Confidence 87753 33444555554
No 411
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=35.28 E-value=1.3e+02 Score=35.83 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCceEEEEccCCC--CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 132 NHIDLVLTEVMPC--LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 132 ~~pDLVLlDiMP~--mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
...|+|++|.-.+ ..-++++++||+. +++++|| +..-...+....++++|||.+.+
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~--~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKT--YPELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHh--CCCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 4689999998222 2335899999753 4666655 33445677889999999998754
No 412
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=35.21 E-value=1.2e+02 Score=34.34 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=40.5
Q ss_pred CCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 132 NHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 132 ~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
..+|+|++|+ --. ..-++.+++||+. ++.+ .|+--.-...+....++++|||.+.+-
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~--~p~~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREA--FPEH-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhh--CCCC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3589999998 433 2347889999754 4553 333444667888999999999998643
No 413
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=35.09 E-value=2.2e+02 Score=30.90 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHHH----HHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHVV----AALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L----~~lL~~~G--yeV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.|||.|++-.+.-.+ ..+=+..+ ..+ +.+.+.+||++.++ ..+|.|.+|-|.- +.++++.+. ...
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~---~gaDyI~ld~~~~----e~lk~~v~~-~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAE---AGADIIMLDNMKP----EEIKEAVQL-LKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCH----HHHHHHHHH-hcC
Confidence 588888875544322 22222234 223 48899999999886 4689999997311 334444321 112
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+||++ ++--..+.+....+.|++.+-+
T Consensus 222 ~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 367654 5556788888999999987643
No 414
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=35.06 E-value=1.9e+02 Score=32.90 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=41.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|||||-|... ....+...|+..|+++..+. ..+++++.+++ ..+|+||- +-+.+-+++.+.+
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~AK~i 97 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNS--FKPDTIIA--LGGGSPMDAAKIM 97 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHHH
Confidence 47899987543 33457778888888776553 34567777776 67898874 4555556665555
No 415
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.04 E-value=2e+02 Score=30.77 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCc-eEEEEcc-CC-CCCH--HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHH-HCCCCeEEe
Q 004001 120 GLQAWKILEDLTNHI-DLVLTEV-MP-CLSG--VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL-SKGAVDFLV 190 (780)
Q Consensus 120 g~eALe~L~~~~~~p-DLVLlDi-MP-~mdG--leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al-~aGAddyL~ 190 (780)
..+.++.+.+ ..+ .++++|+ -- .+.| +++++++++. ..+|||+--+-.+.+.+.+++ ..|+++.+.
T Consensus 154 ~~e~~~~~~~--~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEA--LGAGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHH--cCCCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 4566666654 333 4777776 32 2233 6778888653 569999998899999999998 799998764
No 416
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=35.00 E-value=3.5e+02 Score=25.29 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=34.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc-CCCceEEEEcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDL-TNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~-~~~pDLVLlDi 141 (780)
.+++|.||-| +.+... |+-.|.+++.+.+.+++.+.++.. ...+.+||+.-
T Consensus 2 ~~~kIaVIGD-~dtv~G----FrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite 53 (104)
T PRK01395 2 TMYKIGVVGD-KDSILP----FKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITE 53 (104)
T ss_pred cceeEEEEEC-HHHHHH----HHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcH
Confidence 3468999998 444433 334588888888888877766542 25688888864
No 417
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=34.99 E-value=1.3e+02 Score=35.55 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 118 TNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 118 ~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.+..+-+..|.. ...|+|++|. ... ..-++++++||.. ++++|||+ -.-...+....++++||+.+-
T Consensus 224 ~~~~~ra~~Lv~--aGVd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLD--AGVDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHH--hCCCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 344454555544 4689999999 633 2346788899653 57788776 335677888899999997764
No 418
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=34.94 E-value=1.9e+02 Score=32.70 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=43.8
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDSTR-----HVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~~r-----~~L~~lL~~~GyeV~~A~d---------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-|+|||-|..... +.+...|+..|+++..+.. ..++++.+++ ..+|+||- +-+.+-+++.+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE--FEPDWIIA--LGGGSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHH
Confidence 4789998876544 5678888888887765543 5567777776 67888864 566666666666
Q ss_pred H
Q 004001 154 I 154 (780)
Q Consensus 154 I 154 (780)
|
T Consensus 100 i 100 (375)
T cd08179 100 M 100 (375)
T ss_pred H
Confidence 5
No 419
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.85 E-value=2e+02 Score=34.17 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=58.1
Q ss_pred ccEEEEEeCCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHhcCCCceEEEEcc---------------CC
Q 004001 87 SLKVLLVENDDST----RHVVAALLRNCG--YEVTE--ATNGLQAWKILEDLTNHIDLVLTEV---------------MP 143 (780)
Q Consensus 87 ~lrVLIVDDD~~~----r~~L~~lL~~~G--yeV~~--A~dg~eALe~L~~~~~~pDLVLlDi---------------MP 143 (780)
++.+++||--+-. .+.|+.+=..++ ..|.. +.+.+.|..++.. ..|.|.+-+ .|
T Consensus 254 Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~~ 330 (502)
T PRK07107 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGRG 330 (502)
T ss_pred CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCcc
Confidence 4567777633332 344444444443 34443 6677777777753 457765532 22
Q ss_pred CCCHHH-HHHHHHhh--cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 144 CLSGVA-LLSKIMSH--KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 144 ~mdGle-Ll~~IRs~--~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..+.+. +.+..+.. .....+|||+-.+-....++.+|+.+||+..+.
T Consensus 331 ~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 331 QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 222222 22222110 112348999999998999999999999998874
No 420
>PLN02823 spermine synthase
Probab=34.64 E-value=1.2e+02 Score=34.13 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=37.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC-----GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-----GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP 143 (780)
.+|.+||=|+.+.++.+..|... .-++. ...|+.+.|+. ....|||||+|+ -|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---RDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh---CCCCccEEEecCCCc
Confidence 47999999999999999888532 12333 45666665543 235799999997 55
No 421
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=34.57 E-value=3.7e+02 Score=27.63 Aligned_cols=65 Identities=17% Similarity=0.047 Sum_probs=40.8
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+-...+.-|.-+++.+. ..+|||+ +... ...+.+..+..+|+..+-+.+++...+..+..
T Consensus 264 ~d~~i~ps~~e~~~~~~~Ea~~-----~G~PvI~-~~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 264 ADLFVLSSRYEGFPNVLLEAMA-----LGTPVVA-TDCP---GPREILEDGENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred CCEEEeCcccCCCCcHHHHHHH-----hCCCEEE-cCCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHh
Confidence 4555544311233566777763 3577765 3322 33466778889999999999999766665544
No 422
>PRK08185 hypothetical protein; Provisional
Probab=34.56 E-value=4.8e+02 Score=28.74 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=67.0
Q ss_pred hCCCEEE--EECCHHHHHHHHHhc--CCCceEEEEccCC---CCCHHHHHHHHHhhcCCCCccEEEEecCC-CHHHHHHH
Q 004001 109 NCGYEVT--EATNGLQAWKILEDL--TNHIDLVLTEVMP---CLSGVALLSKIMSHKTRKNLPVIMMSSLD-SMGLVFKC 180 (780)
Q Consensus 109 ~~GyeV~--~A~dg~eALe~L~~~--~~~pDLVLlDiMP---~mdGleLl~~IRs~~~~~~iPIIvLSa~~-~~e~~~~a 180 (780)
+.+|-|- -+.+.+.+...++.. ...| +|| .+-+ ...|.++...++.......+||.+--.+. +.+.+.+|
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sP-vIl-~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~a 87 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAP-AII-AIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRA 87 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCC-EEE-EeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Confidence 4467665 455666555544321 2345 333 3311 12345566666544434579999988887 66889999
Q ss_pred HHCCCCeEEe--CCCCHHHHHHHHHHHHHHhccC
Q 004001 181 LSKGAVDFLV--KPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 181 l~aGAddyL~--KP~~~eeL~~~L~~llrr~~~~ 212 (780)
++.|++.++. +-++.++..+..+++...++..
T Consensus 88 i~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~ 121 (283)
T PRK08185 88 IRCGFTSVMIDGSLLPYEENVALTKEVVELAHKV 121 (283)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999988876 5788999999999988777543
No 423
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=34.53 E-value=3.3e+02 Score=27.98 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe--CCCCHHHHHHHHHHH
Q 004001 146 SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--KPIRKNELKNLWQHV 205 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~--KP~~~eeL~~~L~~l 205 (780)
..++.++.||+. .++||++...-.+...+..++++||+.++. .-+..+++...+...
T Consensus 59 g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 59 GSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 456788888653 378999875545666788999999999973 333445555555444
No 424
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=34.52 E-value=5e+02 Score=27.51 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=58.7
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCc
Q 004001 92 LVENDDSTRHVVAALLRNCGYEVTE-A-----TNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 92 IVDDD~~~r~~L~~lL~~~GyeV~~-A-----~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~i 163 (780)
|..|...+.++++.+ ++.++-|.. . .+..+..+.+.+ ...|.|-.+. .++ .--++++++++ ..+
T Consensus 121 Ll~~p~~l~eiv~av-r~~~~pVsvKir~g~~~~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~-----~~i 192 (233)
T cd02911 121 LLKDPERLSEFIKAL-KETGVPVSVKIRAGVDVDDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDIS-----TEL 192 (233)
T ss_pred HcCCHHHHHHHHHHH-HhcCCCEEEEEcCCcCcCHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhc-----CCC
Confidence 334555555555555 445554431 1 245555566665 4578777776 554 22366777663 468
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
|||..-.-.+.+.+.+++..|++.+..
T Consensus 193 pVIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 193 FIIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 999988888999999999999988754
No 425
>PRK07206 hypothetical protein; Provisional
Probab=34.51 E-value=5.1e+02 Score=29.19 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=13.6
Q ss_pred eEEeCCC------------CHHHHHHHHHHHHH
Q 004001 187 DFLVKPI------------RKNELKNLWQHVWR 207 (780)
Q Consensus 187 dyL~KP~------------~~eeL~~~L~~llr 207 (780)
-+++||. +.++|...+..++.
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~ 180 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILG 180 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 6678885 45677766666553
No 426
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.48 E-value=3.4e+02 Score=29.35 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 98 STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
.....++..+++.|++|.. ..+....+..++. ..+|+||+.. ...+...+++.+++.. ...+++.
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~--~~~d~vi~~~-~~~~~~~~~~~~~~~g--~~~~~~~ 223 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN--SKPDLIVISA-LAADGGNLVRQLRELG--YNGLIVG 223 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEECC-cchhHHHHHHHHHHcC--CCCceec
Confidence 4456777888888988763 2355667777766 6789998775 2335677888887644 2345543
No 427
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=34.46 E-value=1.8e+02 Score=33.32 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~~----r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-++|||.|.... .+.+...|++.|.++..+. ...++++.+++ ..+|+||- +-+.+-+++.+.|
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~Iia--vGGGS~iD~AKai 125 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGVIA--FGGGSVLDAAKAV 125 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEEEE--eCChHHHHHHHHH
Confidence 478888775332 3557888888888766542 34567777776 68998875 5566666666655
No 428
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=34.43 E-value=3.2e+02 Score=29.51 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=59.6
Q ss_pred EEeCCHHHHHHHHH------------HHHhCCCEEEE----------ECCHHHHHHHHHhcCCCceEEEEcc-CCCC---
Q 004001 92 LVENDDSTRHVVAA------------LLRNCGYEVTE----------ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--- 145 (780)
Q Consensus 92 IVDDD~~~r~~L~~------------lL~~~GyeV~~----------A~dg~eALe~L~~~~~~pDLVLlDi-MP~m--- 145 (780)
+|.|+..+..++.. +|.+.|.+|+. ..-..+|+++|.+ ..+|.++++. ||--
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~--~~~DalVl~vliPtpGtk 195 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVN--YEPDALVLVVLIPTPGTK 195 (275)
T ss_pred ecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhc--CCCCeEEEEEEecCCchh
Confidence 45577777665432 45566766541 2355689999986 7899999998 8632
Q ss_pred -------CHHHHHHHHH-hhcCCCCccEEEEecCCCHHH----HHHHHHCCCCeEEeCCCC
Q 004001 146 -------SGVALLSKIM-SHKTRKNLPVIMMSSLDSMGL----VFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 146 -------dGleLl~~IR-s~~~~~~iPIIvLSa~~~~e~----~~~al~aGAddyL~KP~~ 194 (780)
+--|.++.++ ++..+++ ||++=.+...-+. ...+..+|+ |-|.+|.+
T Consensus 196 m~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gV-d~It~P~~ 254 (275)
T COG1856 196 MGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGV-DRITFPPR 254 (275)
T ss_pred ccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCC-ceeecCCc
Confidence 1223444332 2334566 7777666554333 334566776 45667653
No 429
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=34.28 E-value=6.1e+02 Score=27.22 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCCCccEEEEecC---CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSL---DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVWR 207 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~---~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~llr 207 (780)
..+++.+. ..+|+|++.-. .......+.+..+-.+++..|- ++++|..+|..++.
T Consensus 261 ~~l~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 261 STVAELAA-----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hHHHHHHH-----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 45556662 45888876321 1112223345556678887665 49999999988874
No 430
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.23 E-value=4.1e+02 Score=28.68 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
....++..|+..|.+|+. ..+....+..+.. ..+|+||+-. ...+...+++.+++.. .+++++..+..
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~v~~~~-~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 225 (340)
T cd06349 151 SADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRD--ANPDAIILIS-YYNDGAPIARQARAVG--LDIPVVASSSV 225 (340)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHh--cCCCEEEEcc-ccchHHHHHHHHHHcC--CCCcEEccCCc
Confidence 356677778888887762 2356667777765 6799998764 3345677888886544 45777766554
Q ss_pred CCHHHHH
Q 004001 172 DSMGLVF 178 (780)
Q Consensus 172 ~~~e~~~ 178 (780)
.+...+.
T Consensus 226 ~~~~~~~ 232 (340)
T cd06349 226 YSPKFIE 232 (340)
T ss_pred CCHHHHH
Confidence 4444333
No 431
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=34.14 E-value=2.6e+02 Score=31.27 Aligned_cols=64 Identities=20% Similarity=0.122 Sum_probs=40.9
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCEEEEEC------C---HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDSTR----HVVAALLRNCGYEVTEAT------N---GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~~r----~~L~~lL~~~GyeV~~A~------d---g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-+||||.|..... ..+...|+..|+.+..+. + ..++++.++. ..+|+||- +-+..-+++.+.+
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~Iia--iGGGs~~D~AK~v 99 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYRE--EGCDGVIA--VGGGSVLDTAKAI 99 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHh--cCCCEEEE--eCCchHHHHHHHH
Confidence 4889998765433 467778887777666443 2 3456666655 56888764 4555666666665
Q ss_pred H
Q 004001 155 M 155 (780)
Q Consensus 155 R 155 (780)
.
T Consensus 100 a 100 (370)
T cd08551 100 A 100 (370)
T ss_pred H
Confidence 3
No 432
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.08 E-value=1.8e+02 Score=31.07 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=45.9
Q ss_pred ccEEEEE------eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 87 SLKVLLV------ENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIV------DDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
..+|++| +|.......++..|++.|++|......++.++.|.. .|+|++ ++.+-+.+++.++.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~----ad~I~v---~GGnt~~l~~~l~~ 99 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN----AEAIFV---GGGNTFQLLKQLYE 99 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc----CCEEEE---CCccHHHHHHHHHH
Confidence 4567776 344555667889999999999888777777777754 677764 67777777777754
No 433
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.04 E-value=2.8e+02 Score=31.27 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCHHHHH----HHHHCCCC--eEEe
Q 004001 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVF----KCLSKGAV--DFLV 190 (780)
Q Consensus 149 eLl~~IRs~~~~~~iPIIvLSa~~~~e~~~----~al~aGAd--dyL~ 190 (780)
++++.+++.....++|.|+||+-.+.+... -|.++|+. +||.
T Consensus 229 eA~~~f~~~~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~ 276 (329)
T PRK04161 229 EAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLC 276 (329)
T ss_pred HHHHHHHHHhcccCCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEe
Confidence 666777766666789999999988766544 45678987 9986
No 434
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=33.93 E-value=1.4e+02 Score=33.15 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 122 QAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 122 eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.++.+.+ ..+|+|.+|. ... ..-++++++|++. .+++||++ ..-...+.+..++++|||.+..
T Consensus 97 ~~~~~l~e--agv~~I~vd~~~G~~~~~~~~i~~ik~~--~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 97 ERAEALVE--AGVDVIVIDSAHGHSVYVIEMIKFIKKK--YPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHHHHH--CCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 33444443 5689999997 422 2347788888754 34577665 3445677888999999987764
No 435
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=33.91 E-value=4.7e+02 Score=27.28 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHH
Q 004001 121 LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKN 200 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~ 200 (780)
++..+++.. .|++|+-...+.-|+.+++.+. ..+|||+. ... ...+.+..|..+++..+.+. +|..
T Consensus 270 ~~~~~~~~~----ad~~l~~s~~e~~~~~~~Ea~~-----~g~PvI~~-~~~---~~~~~i~~~~~g~~~~~~~~-~~~~ 335 (374)
T cd03817 270 EELPDYYKA----ADLFVFASTTETQGLVLLEAMA-----AGLPVVAV-DAP---GLPDLVADGENGFLFPPGDE-ALAE 335 (374)
T ss_pred HHHHHHHHH----cCEEEecccccCcChHHHHHHH-----cCCcEEEe-CCC---ChhhheecCceeEEeCCCCH-HHHH
Confidence 444455543 4666654323334666777762 35788753 322 23455677788999998887 8888
Q ss_pred HHHHHHH
Q 004001 201 LWQHVWR 207 (780)
Q Consensus 201 ~L~~llr 207 (780)
.|..++.
T Consensus 336 ~i~~l~~ 342 (374)
T cd03817 336 ALLRLLQ 342 (374)
T ss_pred HHHHHHh
Confidence 8887765
No 436
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=33.87 E-value=4.6e+02 Score=30.18 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=57.4
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVEND-DSTRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD-~~~r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
++++|+.+- +.....+..+..+.+-.+.. .-+.+++..++. ..|++|+=..-+.-|+-+++.+. ..+|
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~----~aDv~l~pS~~E~~gl~~lEAma-----~G~p 391 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA----GADFILMPSRFEPCGLTQLYAMR-----YGTV 391 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH----hCCEEEeCCCcCCcHHHHHHHHH-----CCCC
Confidence 455555544 23344444444444433332 122333333333 24666543222334666666663 2356
Q ss_pred EEEEecCCCHHHHHHHHHCC------CCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKG------AVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aG------AddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|+ +.... ..+.+..| ..+|+..|.++++|..+|.+++...
T Consensus 392 vI~-s~~gg---~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~ 438 (473)
T TIGR02095 392 PIV-RRTGG---LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLY 438 (473)
T ss_pred eEE-ccCCC---ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHH
Confidence 654 33222 12223333 7899999999999999999987643
No 437
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.76 E-value=2.5e+02 Score=30.78 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=45.9
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 115 TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 115 ~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.+.+.+++.+.+. ..+|+|.+|-| +.+.++++.+.. .+.+||++ ++--..+.+.++...|+|.+-+
T Consensus 194 VEv~tleea~eA~~---~gaD~I~LD~~----~~e~l~~~v~~~-~~~i~leA-sGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 194 VEVESLDELRQALA---AGADIVMLDEL----SLDDMREAVRLT-AGRAKLEA-SGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred EEeCCHHHHHHHHH---cCCCEEEECCC----CHHHHHHHHHHh-CCCCcEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 37889999998886 36899999864 344455443221 24677654 4455678888999999976643
No 438
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=33.72 E-value=4.4e+02 Score=29.25 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi 141 (780)
|.+..++++++ ..+|+|+...
T Consensus 50 d~~~l~~~~~~--~~id~v~~~~ 70 (380)
T TIGR01142 50 DGDALRAVIER--EKPDYIVPEI 70 (380)
T ss_pred CHHHHHHHHHH--hCCCEEEecc
Confidence 44445555554 4678777643
No 439
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=33.70 E-value=1.2e+02 Score=35.31 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+.+..+++ ..+|+|.+|. -.. ...++++++||+. ++++|||+ -.-...+.+..++++||+.+.
T Consensus 227 ~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 44554444 4689999998 432 4467788888754 46788776 444567788899999998773
No 440
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=33.64 E-value=4.5e+02 Score=27.57 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHH
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL 198 (780)
..++..+++.. .|++|+-...+.-|..+++.+. ..+|||+. .... ..+.+..+-.+++..|.+.++|
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~~e~~~~~~lEa~a-----~g~PvI~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l 322 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSRTETFGLVVLEAMA-----SGLPVVAP-DAGG---PADIVTDGENGLLVEPGDAEAF 322 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcccccCCcHHHHHHH-----cCCCEEEc-CCCC---chhhhcCCcceEEcCCCCHHHH
Confidence 34445555543 4666654322334566777773 35787753 3322 2344556678899999999999
Q ss_pred HHHHHHHHH
Q 004001 199 KNLWQHVWR 207 (780)
Q Consensus 199 ~~~L~~llr 207 (780)
...|..++.
T Consensus 323 ~~~i~~l~~ 331 (364)
T cd03814 323 AAALAALLA 331 (364)
T ss_pred HHHHHHHHc
Confidence 999988865
No 441
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.62 E-value=5.4e+02 Score=28.20 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE------------------EECCHHHHHHHHHhcCCCceEEE--------Ecc-CCCCC
Q 004001 94 ENDDSTRHVVAALLRNCGYEVT------------------EATNGLQAWKILEDLTNHIDLVL--------TEV-MPCLS 146 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~GyeV~------------------~A~dg~eALe~L~~~~~~pDLVL--------lDi-MP~md 146 (780)
+++-.....+..+....|..|. .+.+.++|.+.+++ ..+|.|- +-. -|..+
T Consensus 111 ~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~--tgvD~Lavs~Gt~hg~~~~~~~l~ 188 (282)
T TIGR01859 111 EENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKE--TGVDYLAAAIGTSHGKYKGEPGLD 188 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHH--HCcCEEeeccCccccccCCCCccC
Q ss_pred HHHHHHHHHhhcCCCCccEEEE-ecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMM-SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvL-Sa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
++++++|++. -.+|+++. ++.-..+.+.++++.|++.+=.----.......++..+.
T Consensus 189 -~e~L~~i~~~---~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 189 -FERLKEIKEL---TNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred -HHHHHHHHHH---hCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
No 442
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=33.60 E-value=8.5 Score=39.84 Aligned_cols=70 Identities=33% Similarity=0.340 Sum_probs=51.8
Q ss_pred CCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 004001 132 NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 132 ~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
..+|+++.++ ||.+.++.++..+.......+++++++............+..++.+|+.+|....++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 132 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRS 132 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccC
Confidence 3579999999 999999999888865444566666667666655556777777899999999884444333
No 443
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=33.57 E-value=1.8e+02 Score=32.96 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=41.3
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|||||-|... ..+.+...|++.|+++..+. +..++++.+++ ..+|+||- +-+.+-+++.+.|
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK~i 106 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA--SGADYLIA--IGGGSPQDTCKAI 106 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCChHHHHHHHHH
Confidence 48999987644 34457788888887766543 23466677766 67898764 4555556666544
No 444
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.55 E-value=2.9e+02 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=41.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~~----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|+|||-|... ..+.+...|+..|+++..+. ...++++.++. ..+|+||- +-+.+-+++.+.|
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~~D~AKai 99 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKE--GGCDVIIA--LGGGSPIDTAKAI 99 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCchHHHHHHHH
Confidence 47999987643 33557788888888766543 24566667765 67898864 4555666766665
No 445
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=33.44 E-value=86 Score=31.44 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=44.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc-c-C-CCCCHHHHHHHHHhhcCCCCccEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-M-PCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlD-i-M-P~mdGleLl~~IRs~~~~~~iPII 166 (780)
|||||.-...-..+..+|++.|+++............... ..+|.||+- - + +..+. ....|++. ....+||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil~gG~~~~~~~~--~~~~i~~~-~~~~~Pvl 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVISPGPGHPEDAG--ISLEIIRA-LAGKVPIL 75 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEECCCCCCcccch--hHHHHHHH-HhcCCCEE
Confidence 6899988888999999999999988765543332221111 358876662 2 2 22221 22223221 12458988
Q ss_pred EEec
Q 004001 167 MMSS 170 (780)
Q Consensus 167 vLSa 170 (780)
-+.-
T Consensus 76 GIC~ 79 (184)
T cd01743 76 GVCL 79 (184)
T ss_pred EECH
Confidence 7753
No 446
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=33.38 E-value=5.1e+02 Score=26.77 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=59.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEE-----------------------
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVL----------------------- 138 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVL----------------------- 138 (780)
-|.|++-+-.....+...|+..|-.|.. ..+.+.+++.+.+. ..||=||
T Consensus 26 ~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~-~~pdGIISTk~~~i~~Akk~~~~aIqR~Fi 104 (181)
T COG1954 26 YVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEV-IKPDGIISTKSNVIKKAKKLGILAIQRLFI 104 (181)
T ss_pred EEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHh-ccCCeeEEccHHHHHHHHHcCCceeeeeee
Confidence 4677777777777777888777755442 34556666666542 2344333
Q ss_pred E--------------------ccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 139 T--------------------EVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 139 l--------------------DiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
+ .+||| =--.++++|.++ -++|||.=---...+.+..|+++||...
T Consensus 105 lDS~Al~~~~~~i~~~~pD~iEvLPG-v~Pkvi~~i~~~---t~~piIAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 105 LDSIALEKGIKQIEKSEPDFIEVLPG-VMPKVIKEITEK---THIPIIAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred ecHHHHHHHHHHHHHcCCCEEEEcCc-ccHHHHHHHHHh---cCCCEEeccccccHHHHHHHHHhCcEEE
Confidence 1 22555 224566677543 3578876555667888999999998654
No 447
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.37 E-value=1.6e+02 Score=31.15 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=48.6
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 117 ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 117 A~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
-.+..++++.+.+. .-.+|++|+ --+ +.|++ .|.+. ..++|||+--+-.+.+++.++...|+++.|.
T Consensus 142 ~~~~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 142 SIKVEDAYEMLKNY--VNRFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CCCHHHHHHHHHHH--hCEEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 44566777777663 236899998 444 57877 33221 2479999999999999999999999998775
No 448
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.26 E-value=2.7e+02 Score=30.81 Aligned_cols=102 Identities=17% Similarity=0.334 Sum_probs=52.7
Q ss_pred cEEEEEeC--CH---HHHHHHHHHHHhCCCEEEEECCHHHHH--HHH-HhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 88 LKVLLVEN--DD---STRHVVAALLRNCGYEVTEATNGLQAW--KIL-EDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 88 lrVLIVDD--D~---~~r~~L~~lL~~~GyeV~~A~dg~eAL--e~L-~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
.+|+||-. .+ .....+...|++.|++|.......+.. ..+ ......+|+||+ -+.||. +++.++.. .
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGT-~l~~~~~~-~ 78 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV---LGGDGT-VLAAARHL-A 78 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE---ECCcHH-HHHHHHHh-c
Confidence 35777632 22 334456666778899987544322211 111 111135787775 356773 33333322 1
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCC-HHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHVWR 207 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~-~eeL~~~L~~llr 207 (780)
...+||+.+.. .|=.+||.-... ..+ ...|+++++
T Consensus 79 ~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~ 114 (305)
T PRK02645 79 PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQE 114 (305)
T ss_pred cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHc
Confidence 35789888764 234578885421 222 556666554
No 449
>PRK01581 speE spermidine synthase; Validated
Probab=33.14 E-value=1.5e+02 Score=33.90 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=41.7
Q ss_pred cEEEEEeCCHHHHHHHHHH--HH---hC---CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC------HHHHH
Q 004001 88 LKVLLVENDDSTRHVVAAL--LR---NC---GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS------GVALL 151 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~l--L~---~~---GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md------GleLl 151 (780)
.+|.+||=|+.+.++.+.. |. .. +-+|. .+.|+.+.+... ...||+||+|+ -|... ..+++
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---~~~YDVIIvDl~DP~~~~~~~LyT~EFy 251 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---SSLYDVIIIDFPDPATELLSTLYTSELF 251 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---CCCccEEEEcCCCccccchhhhhHHHHH
Confidence 5899999999988887752 21 11 22444 566777666543 35799999997 54321 23566
Q ss_pred HHHHh
Q 004001 152 SKIMS 156 (780)
Q Consensus 152 ~~IRs 156 (780)
+.++.
T Consensus 252 ~~~~~ 256 (374)
T PRK01581 252 ARIAT 256 (374)
T ss_pred HHHHH
Confidence 66654
No 450
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=32.98 E-value=3e+02 Score=28.47 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=49.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEcc-CCC---------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH---HHHC
Q 004001 117 ATNGLQAWKILEDLTNHIDLVLTEV-MPC---------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK---CLSK 183 (780)
Q Consensus 117 A~dg~eALe~L~~~~~~pDLVLlDi-MP~---------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~---al~a 183 (780)
-.+-.+.++.+.. ..+|.|++|+ -.. .+-.+++..++.... ....+++=....+.....+ ++..
T Consensus 7 p~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-~~~~~~VRvn~~~~~~~~~Dl~~l~~ 83 (221)
T PF03328_consen 7 PANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-AGSEIIVRVNSLDSPHIERDLEALDA 83 (221)
T ss_dssp ESTSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-SSSEEEEE-SSTTCHHHHHHHHHHHT
T ss_pred eCCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-ccccceecCCCCCcchhhhhhhhccc
Confidence 3445566676665 6899999998 422 222345555543221 2234444444445445556 9999
Q ss_pred CCCeEEeCCC-CHHHHHHHHHHH
Q 004001 184 GAVDFLVKPI-RKNELKNLWQHV 205 (780)
Q Consensus 184 GAddyL~KP~-~~eeL~~~L~~l 205 (780)
|+++++.-=+ +.+++..++..+
T Consensus 84 g~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 84 GADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp TSSEEEETT--SHHHHHHHHHHH
T ss_pred CCCeeeccccCcHHHHHHHHHHH
Confidence 9999876544 566666665554
No 451
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=32.98 E-value=4.1e+02 Score=28.08 Aligned_cols=101 Identities=13% Similarity=0.178 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHH---HhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCC---HH----HHHHHHHhh
Q 004001 89 KVLLVENDDSTRHVVAALL---RNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS---GV----ALLSKIMSH 157 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL---~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md---Gl----eLl~~IRs~ 157 (780)
.|.|-.-+|..+..|..++ +..|+.+..-+||.-..+.+. .+|.|.+|+ .|... .+ ++++.+++.
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~----~~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR----DLDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh----hCCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 5888888888865555544 456999988888876555453 367888999 77522 22 333444321
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCC-CCeEEeCCCCH
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLVKPIRK 195 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aG-AddyL~KP~~~ 195 (780)
..-.+.+|+ +...+.+.+.+..... ...++.-|...
T Consensus 151 -~~~~vK~Vv-~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 -PQTSLKVVV-FDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred -CceEEEEEE-CCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 122344443 3444444443333221 12366667664
No 452
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=32.94 E-value=5.1e+02 Score=27.96 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEe
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLS 169 (780)
|....+..++. ..+|+|++ ..++.+...+++.+++....++++++...
T Consensus 174 d~~~~i~~l~~--~~pd~v~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 221 (333)
T cd06359 174 DFSAELAQIRA--AKPDAVFV-FLPGGMGVNFVKQYRQAGLKKDIPLYSPG 221 (333)
T ss_pred chHHHHHHHHh--CCCCEEEE-EccCccHHHHHHHHHHcCcccCCeeeccC
Confidence 45556666765 67999987 34445678888999776544456655433
No 453
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.93 E-value=3.5e+02 Score=29.69 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTRHVVAALL----RNCGY--EV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL----~~~Gy--eV-~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.|||-|.+-...-.+...+ +..+. .| +.+.+.+++.+.+. ..+|.|.+|. -|++.++++.+.. ..
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~---~gaDyI~lD~----~~~e~l~~~~~~~-~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVA---AGADIIMFDN----RTPDEIREFVKLV-PS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH---cCCCEEEECC----CCHHHHHHHHHhc-CC
Confidence 5788777755543333333 33342 23 47899999988875 4689999985 2456666665432 12
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+|| ..++--..+.+.+..+.|++.+-+
T Consensus 232 ~i~i-~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVT-EASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 3443 345556788889999999987643
No 454
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=32.67 E-value=3.6e+02 Score=30.96 Aligned_cols=54 Identities=7% Similarity=0.150 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye---V~-~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+|.-||-++...+..+.-++..|+. +. ...|..+.+..+......||+||+|.
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 37999999999999999999887763 33 45677777665543235799999996
No 455
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=32.51 E-value=4.9e+02 Score=29.81 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE------e-CCCCHHHHHHHHHHHHHHh
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL------V-KPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL------~-KP~~~eeL~~~L~~llrr~ 209 (780)
++.+.+|++......+|||...+-.+.+++.+++.+||+.+. . -|.-..+|..-|..++++.
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEK 307 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHc
Confidence 455555543211137999999999999999999999998763 3 2555666777777766654
No 456
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=32.49 E-value=3.9e+02 Score=30.10 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-----------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHH
Q 004001 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEA-----------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALL 151 (780)
Q Consensus 83 ~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A-----------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl 151 (780)
.++.+.+|||--.. ....+...|++.|++++.+ ...++++..+.. ..||.||+ .....---++
T Consensus 7 ~pL~g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~--~~~d~vvf--TS~ngv~~~~ 80 (381)
T PRK07239 7 APLAGFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIA--APPDIVVA--TTGIGFRGWV 80 (381)
T ss_pred CCCCCcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHc--CCCCEEEE--eChHHHHHHH
Q ss_pred HHHHhhcCC-------CCccEEEEecCCCHHHHHHHHHCCCC-eEEeCCCCHHHHHHHHH
Q 004001 152 SKIMSHKTR-------KNLPVIMMSSLDSMGLVFKCLSKGAV-DFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 152 ~~IRs~~~~-------~~iPIIvLSa~~~~e~~~~al~aGAd-dyL~KP~~~eeL~~~L~ 203 (780)
+.++..... ..++|+++- ......+.+.|+. +|+..-++.+.|...+.
T Consensus 81 ~~l~~~~~~~~~~~~l~~~~i~aVG----~~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~ 136 (381)
T PRK07239 81 EAADGWGLADELLEALSSARLLARG----PKATGAIRAAGLREEWSPASESSAEVLEYLL 136 (381)
T ss_pred HHHHHcCChHHHHHHHcCCeEEEEC----ccHHHHHHHcCCCCccCCCCCccHHHHHHHh
No 457
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=32.30 E-value=6.1e+02 Score=26.59 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHH
Q 004001 120 GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL 198 (780)
..+...++.. .|++++=. ..+.-|+.+++.+. ..+|||.--. . ...+.+..|..+||..+ .++|
T Consensus 234 ~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma-----~G~PvI~~~~-~---~~~e~i~~~~~g~l~~~--~~~l 298 (335)
T cd03802 234 GAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA-----CGTPVIAFRR-G---AVPEVVEDGVTGFLVDS--VEEL 298 (335)
T ss_pred HHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh-----cCCCEEEeCC-C---CchhheeCCCcEEEeCC--HHHH
Confidence 4445555543 56776644 34555777887773 3468774422 2 22345667778999987 8999
Q ss_pred HHHHHHHH
Q 004001 199 KNLWQHVW 206 (780)
Q Consensus 199 ~~~L~~ll 206 (780)
...|..++
T Consensus 299 ~~~l~~l~ 306 (335)
T cd03802 299 AAAVARAD 306 (335)
T ss_pred HHHHHHHh
Confidence 98888774
No 458
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.23 E-value=3.5e+02 Score=30.44 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCHHHH----HHHHHCCC--CeEEe
Q 004001 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLV----FKCLSKGA--VDFLV 190 (780)
Q Consensus 149 eLl~~IRs~~~~~~iPIIvLSa~~~~e~~----~~al~aGA--ddyL~ 190 (780)
+.++.+++.....++|.|+||+-.+.+.. .-|.++|+ .+||.
T Consensus 227 eA~~~f~~~~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 274 (324)
T PRK12399 227 EAAQHFKEQDAATHLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLC 274 (324)
T ss_pred HHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 55556665555678999999998876654 44667888 79986
No 459
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=32.22 E-value=5.2e+02 Score=29.49 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 004001 104 AALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 104 ~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
..+....++ .|.... ..++..+++.......|++++=..-+.-|+-+++.+. ..+|||+..... ..+
T Consensus 307 ~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma-----~G~PvV~s~~gg----~~e 377 (439)
T TIGR02472 307 LLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAA-----CGLPIVATDDGG----PRD 377 (439)
T ss_pred HHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHH-----hCCCEEEeCCCC----cHH
Confidence 334445554 243332 3445555554310123666543222333667788773 346876543322 234
Q ss_pred HHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 180 CLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 180 al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+..|..+||..|-++++|...|..++.
T Consensus 378 iv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 378 IIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 5567788999999999999999988864
No 460
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.12 E-value=4.6e+02 Score=28.38 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...++..|+..|++|+. ..+....+..|.. ..+|+||+.. ...+...+++.+++.. ...+++.++..
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~~d~v~~~~-~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 234 (344)
T cd06345 161 DAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKA--ADPDVIIAGF-SGNVGVLFTQQWAEQK--VPIPTIGISVE 234 (344)
T ss_pred HHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHh--cCCCEEEEee-cCchHHHHHHHHHHcC--CCCceEEecCC
Confidence 35556777777887763 2455667777765 5689998875 3335677888886543 24566655433
No 461
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.97 E-value=2e+02 Score=30.55 Aligned_cols=96 Identities=9% Similarity=0.076 Sum_probs=60.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEE-ccCCCC--------CHHHHHHHHHhh
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLT-EVMPCL--------SGVALLSKIMSH 157 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~~pDLVLl-DiMP~m--------dGleLl~~IRs~ 157 (780)
|+|.|-.......+...+++.|..... + .+..+.++.+.. ...+.|++ -.+|.. +..+.+++||+.
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~--~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAE--LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh--hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 555565666566677777888876542 2 233455555543 13344433 223321 234667777643
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.++||++=.+-...+.+.++.++ ||.++.-
T Consensus 186 ---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 186 ---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred ---CCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 47899887777778888899999 9999885
No 462
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=31.94 E-value=3.7e+02 Score=29.01 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=48.0
Q ss_pred EEEEEeCCH----HHHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004001 89 KVLLVENDD----STRHVVAALLRNC--GYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (780)
Q Consensus 89 rVLIVDDD~----~~r~~L~~lL~~~--GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IR 155 (780)
+|.+|..+. .....+...|++. +++++. ..+....+..+.. ..+|+||+.. ...+...+++.++
T Consensus 140 ~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~--~~~d~ii~~~-~~~~~~~~~~~~~ 216 (346)
T cd06330 140 TWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLA--AKPDAIFSSL-WGGDLVTFVRQAN 216 (346)
T ss_pred EEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHh--cCCCEEEEec-ccccHHHHHHHHH
Confidence 566665552 2345666777776 444431 2345556666655 5789988754 2346778888887
Q ss_pred hhcCCCCccEEEEec
Q 004001 156 SHKTRKNLPVIMMSS 170 (780)
Q Consensus 156 s~~~~~~iPIIvLSa 170 (780)
+....+.+++|....
T Consensus 217 ~~g~~~~~~~~~~~~ 231 (346)
T cd06330 217 ARGLFDGTTVVLTLT 231 (346)
T ss_pred hcCcccCceEEeecc
Confidence 665545667765554
No 463
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=31.88 E-value=2.5e+02 Score=32.02 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCC----CHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 97 DSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL----SGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m----dGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
..--+.+...|...||+.+.. ...+|||++.. .... ..+++++++++. .++++|| +++.
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~--~p~~~vv-vgGc 73 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQ--NPTAKII-VTGC 73 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhh--CCCcEEE-EECC
Confidence 334567888888889886531 13479999986 3322 367888888653 3556555 4444
Q ss_pred CCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 172 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 172 ~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
.......++++....|++.-+-....|...|...
T Consensus 74 ~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 74 YAQSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred ccccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3333334455666678888888887777777643
No 464
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=31.87 E-value=5e+02 Score=28.08 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHH
Q 004001 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELK 199 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~ 199 (780)
..+..+++.. .|++|+=.+.+.-|+.+++.+. ..+|||+ +.... ..+.+..+-.+++..|.+.++|.
T Consensus 293 ~~~~~~~~~~----adi~l~ps~~e~~~~~l~Ea~a-----~G~Pvi~-s~~~~---~~e~i~~~~~g~~~~~~~~~~l~ 359 (398)
T cd03800 293 REDLPALYRA----ADVFVNPALYEPFGLTALEAMA-----CGLPVVA-TAVGG---PRDIVVDGVTGLLVDPRDPEALA 359 (398)
T ss_pred HHHHHHHHHh----CCEEEecccccccCcHHHHHHh-----cCCCEEE-CCCCC---HHHHccCCCCeEEeCCCCHHHHH
Confidence 4455555543 5666643233334556777762 4578764 33322 33456666778999999999999
Q ss_pred HHHHHHHH
Q 004001 200 NLWQHVWR 207 (780)
Q Consensus 200 ~~L~~llr 207 (780)
..|..++.
T Consensus 360 ~~i~~l~~ 367 (398)
T cd03800 360 AALRRLLT 367 (398)
T ss_pred HHHHHHHh
Confidence 99998875
No 465
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.85 E-value=3.5e+02 Score=30.28 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeE------EeC-CCCHHHHHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF------LVK-PIRKNELKNLWQHVWRR 208 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddy------L~K-P~~~eeL~~~L~~llrr 208 (780)
++.++++++. ....+|||.+.+-.+.+.+.+++.+||+.+ +.+ |.-..++..-|.+++++
T Consensus 276 l~~v~~l~~~-~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 276 TEVIRRLYKE-LGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 3466667543 223699999999999999999999998865 445 77777777777777664
No 466
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=31.75 E-value=4.1e+02 Score=27.54 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=42.3
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.|++|+-...+.-|..+++.+. ..+|||+ +.... ..+.+..+..+++.++.+.++|...|..++..
T Consensus 279 ad~~i~~~~~~~~~~~~~Ea~~-----~G~pvI~-~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 279 ADVFVLPSLREGFGLVLLEAMA-----CGLPVVA-TDVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred cCeeecchhhccCChHHHHHHh-----cCCCEEE-ecCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 4555543322333555666662 3577764 33322 33456677778999999999999999998764
No 467
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=31.64 E-value=2.6e+02 Score=31.42 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=42.4
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDS-TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~-~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IR 155 (780)
-|+|||-|... ....+...|+..|+.+..+. +..++++.+++ ..+|+||- +-+.+-+++.+.+.
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGs~~D~aK~ia 97 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLRE--FGPDAVLA--VGGGSVLDTAKALA 97 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHh--cCcCEEEE--eCCcHHHHHHHHHH
Confidence 37898887655 45667888888887665442 34566777765 57898763 55656666666653
No 468
>PLN00191 enolase
Probab=31.55 E-value=3.2e+02 Score=32.14 Aligned_cols=108 Identities=11% Similarity=0.182 Sum_probs=69.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCE--EE-----------------EE------------CCHHHHHHHHHhcCCCceEEEEcc
Q 004001 93 VENDDSTRHVVAALLRNCGYE--VT-----------------EA------------TNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 93 VDDD~~~r~~L~~lL~~~Gye--V~-----------------~A------------~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
++++....++|.+.++..||+ |. .. -+.++++++++.....++|+.+.-
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 567788888999999877764 11 01 277888888876545678888877
Q ss_pred -CCCCCHHHHHHHHHhhcCCCCccEEEEec-CCCHHHHHHHHHCCC-CeEEeCCCCHHHHHHHHHH
Q 004001 142 -MPCLSGVALLSKIMSHKTRKNLPVIMMSS-LDSMGLVFKCLSKGA-VDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 142 -MP~mdGleLl~~IRs~~~~~~iPIIvLSa-~~~~e~~~~al~aGA-ddyL~KP~~~eeL~~~L~~ 204 (780)
++..| ++-+++|++. ..+||+.==. ........++++.++ +.++.|+-..--|..+++.
T Consensus 319 Pl~~~D-~eg~~~Lt~~---~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~ 380 (457)
T PLN00191 319 PFDQDD-WEHWAKLTSL---EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEA 380 (457)
T ss_pred CCCccc-HHHHHHHHcc---CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 76543 6666777643 3456443111 134667778887775 5567888876666655553
No 469
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=31.49 E-value=3.2e+02 Score=29.65 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=48.4
Q ss_pred hCCCEEEEECCH-----HHH---HH-HHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 109 NCGYEVTEATNG-----LQA---WK-ILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 109 ~~GyeV~~A~dg-----~eA---Le-~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
+.+++|..+.+| +++ .. ++++ ..||+||+=. -|..-|-.-.+++-+ ...+|.|+++........
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~---~~~iP~IvI~D~p~~K~~- 102 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILK---AAGIPCIVIGDAPGKKVK- 102 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHH---hcCCCEEEEcCCCccchH-
Confidence 347777777654 222 22 3344 6799888765 556666666666633 246899999988766555
Q ss_pred HHHHCCCCeEEeCC
Q 004001 179 KCLSKGAVDFLVKP 192 (780)
Q Consensus 179 ~al~aGAddyL~KP 192 (780)
++++..-.+||.-+
T Consensus 103 d~l~~~g~GYIivk 116 (277)
T PRK00994 103 DAMEEQGLGYIIVK 116 (277)
T ss_pred HHHHhcCCcEEEEe
Confidence 55555445666544
No 470
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=31.35 E-value=5.4e+02 Score=27.85 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEE---EC------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 99 TRHVVAALLRNCGYEVTE---AT------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~---A~------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
....+...|++.|.+|.. .. +....+..++. ..+|+||+.. ...+...+++++++...
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~dvvi~~~-~~~~~~~~~~~a~~~g~ 217 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKE--KDSRVIVVHF-SPDLARRVFCEAYKLGM 217 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhc--CCCeEEEEEC-ChHHHHHHHHHHHHcCC
Confidence 356677788888887762 22 34455555554 5689998764 34467788888876543
No 471
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.31 E-value=5e+02 Score=30.72 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCC------------CCC
Q 004001 86 RSLKVLLVE----NDDSTRHVVAALLRNC-GYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMP------------CLS 146 (780)
Q Consensus 86 ~~lrVLIVD----DD~~~r~~L~~lL~~~-GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP------------~md 146 (780)
.+..+++|| ....+.+.++.+=+.+ +..|.. +.+.++|..++. ...|+|-+.+=| +..
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~---aGad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE---AGADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH---cCCCEEEECccCCcccccccccCCchh
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
-+.++..+.+......+|||+--.-.....+.+++.+||+..+.
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeec
No 472
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=31.23 E-value=2e+02 Score=29.50 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCEEEEE-C---CHHH---HHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEA-T---NGLQ---AWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A-~---dg~e---ALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...++..|+++..+ . +..+ .++.+.. ..+|.||+.........+++++++. ..+|||++-..
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~--~~~d~Iiv~~~~~~~~~~~l~~~~~----~gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAIS--QGVDGIIVSPVDPDSLAPFLEKAKA----AGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHH--TTESEEEEESSSTTTTHHHHHHHHH----TTSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH--hcCCEEEecCCCHHHHHHHHHHHhh----cCceEEEEecc
Confidence 3455677777889987764 2 2333 3333333 5699999876333345688888864 35899987554
No 473
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.21 E-value=1.5e+02 Score=31.33 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCCccEEEEecCC------CHHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 004001 160 RKNLPVIMMSSLD------SMGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 160 ~~~iPIIvLSa~~------~~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
.-.+|||+|+-+. ....+..+.++||++||.-.+.++|-...
T Consensus 93 gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 93 GVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred CcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 3568999998754 56678889999999999988888876543
No 474
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=31.18 E-value=4.2e+02 Score=24.42 Aligned_cols=73 Identities=10% Similarity=0.169 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhc--CCCceEEEEcc-C-CCCCHHHHHHHHHhhcCCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEV-TEATNGLQAWKILEDL--TNHIDLVLTEV-M-PCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV-~~A~dg~eALe~L~~~--~~~pDLVLlDi-M-P~mdGleLl~~IRs~~~~~~ 162 (780)
|+|.||.| +.+... |+-.|++. ..+.+.+++.+.+++. ...+.|||+.- + ... -+.++++.. ...
T Consensus 1 mkIaVIGD-~dtv~G----FrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i--~e~i~~~~~---~~~ 70 (100)
T PRK02228 1 MEIAVIGS-PEFTTG----FRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKL--PRRLRRTLE---ESV 70 (100)
T ss_pred CEEEEEeC-HHHHHH----HHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhh--HHHHHHHHh---cCC
Confidence 47888988 444333 33458864 4567766665555432 35688888875 3 222 233444322 234
Q ss_pred ccEEEEec
Q 004001 163 LPVIMMSS 170 (780)
Q Consensus 163 iPIIvLSa 170 (780)
.|+|+.-.
T Consensus 71 ~P~ii~IP 78 (100)
T PRK02228 71 EPTVVTLG 78 (100)
T ss_pred CCEEEEEC
Confidence 67666654
No 475
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=31.10 E-value=4.1e+02 Score=26.74 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhcCCCCccE-EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHH
Q 004001 146 SGVALLSKIMSHKTRKNLPV-IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (780)
Q Consensus 146 dGleLl~~IRs~~~~~~iPI-IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L 202 (780)
-+++++++|++. ...|| +.+..+.....+..+.++|++.++.-....++....+
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 478899999753 34565 3244444556778888999999877655555554444
No 476
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.00 E-value=4.5e+02 Score=29.05 Aligned_cols=101 Identities=22% Similarity=0.348 Sum_probs=58.1
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHH---HHH-------H--HHhcCCCceEEEEccCCCCCHHHHH
Q 004001 89 KVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQ---AWK-------I--LEDLTNHIDLVLTEVMPCLSGVALL 151 (780)
Q Consensus 89 rVLIVD--DD~~~---r~~L~~lL~~~GyeV~~A~dg~e---ALe-------~--L~~~~~~pDLVLlDiMP~mdGleLl 151 (780)
+|+||- +.+.. ...|...|.+.|++|........ ++. . .......+|+||+ -+.||. ++
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDGT-~L 82 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV---LGGDGT-FL 82 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE---ECCcHH-HH
Confidence 577772 33333 34455566778988876432111 110 0 0110123566664 366773 44
Q ss_pred HHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 152 SKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 152 ~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+..|... ...+||+-+- .|=.+||. .+.++++...|.++++.
T Consensus 83 ~aa~~~~-~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 83 SVAREIA-PRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred HHHHHhc-ccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcC
Confidence 4444322 3478988775 35578998 58999999999998754
No 477
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.73 E-value=6e+02 Score=29.00 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-C-------CCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-M-------PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-M-------P~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+..+.+.+ ...|+|.++. . +..+-..+.+.+++ ..+|||+ ..-.+.+...+++++|||.++.
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45566666665 5789999853 1 22245566666643 2588876 4455677888899999999865
No 478
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=30.71 E-value=4.2e+02 Score=30.23 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.0
Q ss_pred CccEEEEecC-CCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSL-DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 162 ~iPIIvLSa~-~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
...||..... .+.......++.|+|+.|.+|-++.+|+.+...+-.
T Consensus 123 ~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 123 STKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 3445554433 345567788999999999999999999987766543
No 479
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=30.67 E-value=3.1e+02 Score=24.76 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=38.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
|+|+.-....+.+++.+.+ .++.|+.+..-.+..+.+.. ..+.+|.-|. .-.++++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~--~~~~~i~gd~----~~~~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELRE--EGVEVIYGDA----TDPEVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH--TTSEEEES-T----TSHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh--cccccccccc----hhhhHHhhc
Confidence 6788888877777777666 66788877777777777776 3466666554 234556655
No 480
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=30.60 E-value=1.8e+02 Score=31.89 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--C---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC-----CHHHHHHHH
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG--Y---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL-----SGVALLSKI 154 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G--y---eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m-----dGleLl~~I 154 (780)
.-+|.+||=|+.+.++.+..|.... . +|. ...||.+.++.. ...||+||+|. -|.. --.++.+.+
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~---~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~ 176 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC---EEKFDVIIVDSTDPVGPAEALFTEEFYEGC 176 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC---CCcCCEEEEcCCCCCCcccccCCHHHHHHH
Confidence 3479999999999999999997653 2 333 455655555443 34799999998 6521 124666666
Q ss_pred Hh
Q 004001 155 MS 156 (780)
Q Consensus 155 Rs 156 (780)
++
T Consensus 177 ~~ 178 (282)
T COG0421 177 RR 178 (282)
T ss_pred HH
Confidence 43
No 481
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.47 E-value=7.7e+02 Score=27.17 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=50.3
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVE-NDDS---TRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVD-DD~~---~r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
.+|.||- |++. ....+...|+..|++|+. ..|....+..++. ..||+||+-. ...+...+++.+++
T Consensus 141 ~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~--~~pd~V~~~~-~~~~~~~~~~~~~~ 217 (351)
T cd06334 141 KKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRR--SGPDYVILWG-WGVMNPVAIKEAKR 217 (351)
T ss_pred CeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHH--cCCCEEEEec-ccchHHHHHHHHHH
Confidence 3555443 3332 345677778888988762 1456677777776 6799998643 33467888999976
Q ss_pred hcCCCCccEEEEecCCC
Q 004001 157 HKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~ 173 (780)
... ..+|+..+....
T Consensus 218 ~G~--~~~~~~~~~~~~ 232 (351)
T cd06334 218 VGL--DDKFIGNWWSGD 232 (351)
T ss_pred cCC--CceEEEeeccCc
Confidence 542 455554433333
No 482
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=30.45 E-value=1.6e+02 Score=28.19 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHHhcCCCceEEEEcc
Q 004001 98 STRHVVAALLRNCGYEVTE---ATNGLQAW-KILEDLTNHIDLVLTEV 141 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~~---A~dg~eAL-e~L~~~~~~pDLVLlDi 141 (780)
.+...|..+|+++|+++.. +.|..+++ +.+++.-..+||||+-=
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittG 66 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTG 66 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECC
Confidence 3567888999999997763 34443333 33333223489998853
No 483
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.44 E-value=2.9e+02 Score=25.14 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=45.0
Q ss_pred CccEEEEEeCCHH----HHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 86 RSLKVLLVENDDS----TRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 86 ~~lrVLIVDDD~~----~r~~L~~lL~~~GyeV~~-A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
+..+|||+=..-. +...+++.+++.|+++.. +.+..++-+.+ ..+|+||+-- ..- .....|++....
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~----~~~Dvill~p--qi~--~~~~~i~~~~~~ 73 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKL----DDADVVLLAP--QVA--YMLPDLKKETDK 73 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhc----CCCCEEEECc--hHH--HHHHHHHHHhhh
Confidence 3457888765543 345567777778887763 44444443333 3589998853 211 134445443333
Q ss_pred CCccEEEEecC
Q 004001 161 KNLPVIMMSSL 171 (780)
Q Consensus 161 ~~iPIIvLSa~ 171 (780)
.++||.++...
T Consensus 74 ~~ipv~~I~~~ 84 (95)
T TIGR00853 74 KGIPVEVINGA 84 (95)
T ss_pred cCCCEEEeChh
Confidence 46899988653
No 484
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=30.42 E-value=45 Score=38.99 Aligned_cols=59 Identities=8% Similarity=-0.096 Sum_probs=42.6
Q ss_pred CCCChhhh--HHHHHHHhh---hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 2 NVDGKADK--RLQELNHCL---QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l---~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
-++|.|.. -...|...| ..-+-..+++||..|++.|.|++.+-|++.++.+....|.+.
T Consensus 604 ~DnGqGwp~~l~dkLl~PFttsK~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 604 IDNGQGWPHELVDKLLTPFTTSKEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQVD 667 (673)
T ss_pred ecCCCCCchhHHHHhcCCcccccccccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEeec
Confidence 36788887 222222223 333445679999999999999999999999988877766553
No 485
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.37 E-value=1.8e+02 Score=28.73 Aligned_cols=59 Identities=20% Similarity=0.452 Sum_probs=37.0
Q ss_pred HHHHHhcCCCceEEEEcc-CCCCCHHHH-HHHHHhhcCCCCccEE-EEecCCCHHHHHHHHHCCCCeEEe
Q 004001 124 WKILEDLTNHIDLVLTEV-MPCLSGVAL-LSKIMSHKTRKNLPVI-MMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 124 Le~L~~~~~~pDLVLlDi-MP~mdGleL-l~~IRs~~~~~~iPII-vLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.++|++ .+||+||+=. ++. .+ +..||+....+.+|++ ++|..... -...+.-++|-|++
T Consensus 82 ~~~l~~--~~PD~IIsThp~~~----~~~l~~lk~~~~~~~~p~~tvvTD~~~~--H~~W~~~~~D~y~V 143 (169)
T PF06925_consen 82 IRLLRE--FQPDLIISTHPFPA----QVPLSRLKRRGRLPNIPVVTVVTDFDTV--HPFWIHPGVDRYFV 143 (169)
T ss_pred HHHHhh--cCCCEEEECCcchh----hhHHHHHHHhhcccCCcEEEEEcCCCCC--CcCeecCCCCEEEE
Confidence 344554 7899999987 753 34 4555555544578865 67765321 12456778888887
No 486
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.36 E-value=3.9e+02 Score=29.43 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=58.1
Q ss_pred EEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 89 KVLLVE--NDDSTR---HVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 89 rVLIVD--DD~~~r---~~L~~lL~~~GyeV~~A~dg~eALe~-------L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
+|+||- +.+... ..+...|++.|+++.........+.. +......+|+||+ -+.||. +++..|.
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---lGGDGT-~L~aa~~ 82 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV---VGGDGN-MLGAARV 82 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE---ECCcHH-HHHHHHH
Confidence 577773 333333 45666677789988865543332210 0111124677665 366773 4444433
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.. ...+|||-+-. |=.+||. .+.++++...|.+++..
T Consensus 83 ~~-~~~~Pilgin~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 83 LA-RYDIKVIGINR-------------GNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred hc-CCCCeEEEEEC-------------CCCCccc-ccCHHHHHHHHHHHHcC
Confidence 22 23688876642 4457776 68899999999998763
No 487
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=30.30 E-value=6.4e+02 Score=26.74 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
+....+..+++ ..+|+|++- .....+..+++.+++....+.+|++......+.
T Consensus 174 d~~~~i~~l~~--~~~d~i~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (333)
T cd06332 174 DFSAELAQIRA--AKPDAVFVF-LPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQ 226 (333)
T ss_pred chHHHHHHHHh--cCCCEEEEe-cccchHHHHHHHHHHcCcccCCceeccCCCCCH
Confidence 45555666665 578998874 333467888898876554446777754444443
No 488
>PF13941 MutL: MutL protein
Probab=30.25 E-value=9.4e+02 Score=28.40 Aligned_cols=119 Identities=11% Similarity=0.091 Sum_probs=74.2
Q ss_pred CccEEEEEeCCHHH-HHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCCCC---HHHHHHHHHhh
Q 004001 86 RSLKVLLVENDDST-RHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPCLS---GVALLSKIMSH 157 (780)
Q Consensus 86 ~~lrVLIVDDD~~~-r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~md---GleLl~~IRs~ 157 (780)
-++|+.++-=-+.+ .+..++.-...|-.|..+ .-.++-++.|.+ .+||+||+-= -.+.+ .+...+.|...
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~--~~PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE--IRPDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc--cCCCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 36777777654433 344444444567666633 334556777766 7899999854 43333 25566666433
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHH-CCCCeEEeCC-------CCHHHHHHHHHHHHHH
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLS-KGAVDFLVKP-------IRKNELKNLWQHVWRR 208 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~-aGAddyL~KP-------~~~eeL~~~L~~llrr 208 (780)
...+|||+--.....+.+.+.|. .|..-|++-- +.++-.+.+|+.+..+
T Consensus 153 --~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~ 209 (457)
T PF13941_consen 153 --NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLR 209 (457)
T ss_pred --CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHH
Confidence 45688887766666677778887 6776666653 3556677788776544
No 489
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=30.19 E-value=4.3e+02 Score=28.16 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=50.0
Q ss_pred hCCCEEEEECCH--------HHHHH-HHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 109 NCGYEVTEATNG--------LQAWK-ILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 109 ~~GyeV~~A~dg--------~eALe-~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
+.+++|..+.+| +.|.. .+++ ..||+||.-- -|..-|-.-.+.|.+. .++|.|+++.-.......
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~--~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkd 103 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEE--FNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKD 103 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccchhHH
Confidence 346777766544 22333 4444 6789998876 7777888778877542 578999998776554444
Q ss_pred HHHHCCCCeEEeCC
Q 004001 179 KCLSKGAVDFLVKP 192 (780)
Q Consensus 179 ~al~aGAddyL~KP 192 (780)
+.-+.|.-..|.|+
T Consensus 104 eleeqGlGYIivk~ 117 (277)
T COG1927 104 ELEEQGLGYIIVKA 117 (277)
T ss_pred HHHhcCCeEEEecC
Confidence 44456654444454
No 490
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=30.18 E-value=2.9e+02 Score=30.04 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=48.6
Q ss_pred cEEEEE-eCCH---HHHHHHHHHHHhCCCEEE---E----ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDD---STRHVVAALLRNCGYEVT---E----ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~---~~r~~L~~lL~~~GyeV~---~----A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
.+|.|| +|++ .....+...|++.|++|+ . ..+....+..++. ..+|+|++- ....+...+++.+++
T Consensus 133 ~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~-~~~~~~~~~~~~~~~ 209 (334)
T cd06356 133 KKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQA--AKPDFVMSI-LVGANHLSFYRQWAA 209 (334)
T ss_pred CeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHh--cCCCEEEEe-ccCCcHHHHHHHHHH
Confidence 345444 3442 234567788888898875 2 2355556666665 679999864 344467788999976
Q ss_pred hcCCCCccEEEE
Q 004001 157 HKTRKNLPVIMM 168 (780)
Q Consensus 157 ~~~~~~iPIIvL 168 (780)
... ..+|++..
T Consensus 210 ~G~-~~~~~~~~ 220 (334)
T cd06356 210 AGL-GNIPMASS 220 (334)
T ss_pred cCC-ccCceeee
Confidence 643 35676653
No 491
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.15 E-value=2.5e+02 Score=28.73 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 99 TRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
+...+...+++.||.+...... .++++.+.. ..+|.||+.. .+. -..++++.. ..+|||++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~---~~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELT---SAQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCC---hHHHHHHhc----CCCCEEEEec
Confidence 3455666677889988754421 245666655 5789887754 433 234566632 4689998854
No 492
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.11 E-value=2.6e+02 Score=30.07 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=45.4
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004001 87 SLKVLLV-ENDDSTRHVVAALLRNCGYEVTEATN-------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (780)
Q Consensus 87 ~lrVLIV-DDD~~~r~~L~~lL~~~GyeV~~A~d-------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~ 158 (780)
+..|.++ .+++.. +...|+..||.|....+ ..+.++++++ ..||+||+|. ...+. +..+.++..
T Consensus 31 g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~vV~D~-y~~~~-~~~~~~k~~- 102 (279)
T TIGR03590 31 GAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEE--EKFDILIVDH-YGLDA-DWEKLIKEF- 102 (279)
T ss_pred CCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh--cCCCEEEEcC-CCCCH-HHHHHHHHh-
Confidence 4455544 443332 34677889999886643 4456777776 5799999997 12222 345566532
Q ss_pred CCCCccEEEEecCC
Q 004001 159 TRKNLPVIMMSSLD 172 (780)
Q Consensus 159 ~~~~iPIIvLSa~~ 172 (780)
..+++++....
T Consensus 103 ---~~~l~~iDD~~ 113 (279)
T TIGR03590 103 ---GRKILVIDDLA 113 (279)
T ss_pred ---CCeEEEEecCC
Confidence 34677777654
No 493
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.08 E-value=1.6e+02 Score=29.94 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=47.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC------CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEAT------NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~~A~------dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+.+|.++...+.+.+.+.+.|+.. |.+|.... ..++.++.+.. ..+|||++-+ +|...- ++.+.+
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~VglG~PkQE~--~~~~~~ 121 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVGLGCPKQEI--WMRNHR 121 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEEcCCcHhHH--HHHHhH
Confidence 4579999999999999999988866 55655331 12334667766 6799999999 998664 344443
No 494
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.02 E-value=3.6e+02 Score=29.44 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++.+.+|++.- .+++|||...+-.+.+++.+++.+||+.+..
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 67777886532 2479999999999999999999999987653
No 495
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.96 E-value=3e+02 Score=31.62 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=43.8
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 88 LKVLLVENDD----STRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~----~~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
-|+|||-|.- -..+.+...|...|.++.++. +..++++.+++ ..+|.||- +-+.+-+++++.|
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~--~~~D~iIa--lGGGS~~D~AK~i 105 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVARE--FGPDTIIA--LGGGSVIDAAKAI 105 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHHH
Confidence 4899999884 345667777888885544333 45677788877 78999875 5666666666655
No 496
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=29.95 E-value=1.7e+02 Score=34.44 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.++++.|.+ ..+|+|++|. -.. ..-++++++|+.. .+++|||+ -.-.+.+....++++||+.+.
T Consensus 230 ~e~a~~L~~--agvdvivvD~a~g~~~~vl~~i~~i~~~--~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVE--AGVDVLVVDTAHGHSEGVLDRVREIKAK--YPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHH--hCCCEEEEECCCCcchhHHHHHHHHHhh--CCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 455555554 5689999997 433 3456788888653 46788776 556677888999999997764
No 497
>PRK01362 putative translaldolase; Provisional
Probab=29.90 E-value=3.7e+02 Score=28.37 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=55.5
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccC--CCCCHHHHHHHHHhhcCC--CCccEEEEecCCCHHH
Q 004001 103 VAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVM--PCLSGVALLSKIMSHKTR--KNLPVIMMSSLDSMGL 176 (780)
Q Consensus 103 L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiM--P~mdGleLl~~IRs~~~~--~~iPIIvLSa~~~~e~ 176 (780)
....|...|+.|. .+-+..+|+...+. ...|=-.++.-| .+.||+++++.++..-.. .++ -|+..+.-....
T Consensus 93 a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~a-Ga~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~t-kilaAS~r~~~~ 170 (214)
T PRK01362 93 AVKALSKEGIKTNVTLIFSANQALLAAKA-GATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDT-EIIAASVRHPMH 170 (214)
T ss_pred HHHHHHHCCCceEEeeecCHHHHHHHHhc-CCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCc-EEEEeecCCHHH
Confidence 3445777788654 68899999988764 223322333323 467899998888653221 233 445555667888
Q ss_pred HHHHHHCCCCeEEeCC
Q 004001 177 VFKCLSKGAVDFLVKP 192 (780)
Q Consensus 177 ~~~al~aGAddyL~KP 192 (780)
+.++..+|++ +++=|
T Consensus 171 v~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 171 VLEAALAGAD-IATIP 185 (214)
T ss_pred HHHHHHcCCC-EEecC
Confidence 8899999998 44434
No 498
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=29.90 E-value=1.5e+02 Score=31.65 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=60.6
Q ss_pred EEEeCC--HHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHhhcCCCC
Q 004001 91 LLVEND--DSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMSHKTRKN 162 (780)
Q Consensus 91 LIVDDD--~~~r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi-MP-~mdG-leLl~~IRs~~~~~~ 162 (780)
-.|+-| ..=-.++..+|+..||+|+-.. ..++.++.+++ ..||+|-+-. |- .|-+ .+++++|++...+
T Consensus 110 gtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e--~k~d~v~~SalMTttm~~~~~viE~L~eeGiR-- 185 (227)
T COG5012 110 GTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE--LKPDLVSMSALMTTTMIGMKDVIELLKEEGIR-- 185 (227)
T ss_pred EeecccHHHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH--cCCcEEechHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 345443 3334778899999999998432 45778888887 6799998876 63 3444 4577888765533
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
-||+++.+-... ...-+-+.|||.|-.-
T Consensus 186 d~v~v~vGGApv-tq~~a~~iGAD~~~~d 213 (227)
T COG5012 186 DKVIVMVGGAPV-TQDWADKIGADAYAED 213 (227)
T ss_pred cCeEEeecCccc-cHHHHHHhCCCccCcC
Confidence 456666433211 1223456788887643
No 499
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=29.88 E-value=3.5e+02 Score=29.24 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred cEEEEEeCC-H---HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVEND-D---STRHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVDDD-~---~~r~~L~~lL~~~GyeV~~---A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
.+|.||-++ + .....+...|+..|++|+. . .+....+..++. ..||+|++.. ...+...+++.+++
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~-~~~~~~~~~~~~~~ 209 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAA--SGADAVLSTL-VGQDAVAFNRQFAA 209 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHH--cCCCEEEEeC-CCCchHHHHHHHHH
Confidence 356555444 2 3446677788888998752 2 244456666666 6799998865 22345678888875
Q ss_pred hcCCCCccEEEEecC
Q 004001 157 HKTRKNLPVIMMSSL 171 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~ 171 (780)
... ..+++..+..
T Consensus 210 ~G~--~~~~~~~~~~ 222 (333)
T cd06358 210 AGL--RDRILRLSPL 222 (333)
T ss_pred cCC--CccCceeecc
Confidence 543 3455554443
No 500
>PRK06801 hypothetical protein; Provisional
Probab=29.87 E-value=4.4e+02 Score=29.07 Aligned_cols=109 Identities=14% Similarity=0.244 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhc--CCCceEEEEcc-CC--CCCHHH-HHHHHHhhcCCCCccEEEEecCC
Q 004001 101 HVVAALLRNCGYEVT--EATNGLQAWKILEDL--TNHIDLVLTEV-MP--CLSGVA-LLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~--~~~pDLVLlDi-MP--~mdGle-Ll~~IRs~~~~~~iPIIvLSa~~ 172 (780)
++|... ++.+|-|- -+.+.+.+...++.. ...| +|| .+ .. ...|++ +...++.......+||.+--.+.
T Consensus 8 ~~l~~A-~~~~yaV~Afn~~n~e~~~avi~AAe~~~~P-vIl-~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~ 84 (286)
T PRK06801 8 NGLAHA-RKHGYALGAFNVLDSHFLRALFAAAKQERSP-FII-NIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHG 84 (286)
T ss_pred HHHHHH-HHCCceEEEEeeCCHHHHHHHHHHHHHHCCC-EEE-EeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344443 34567665 344555554444321 2345 333 33 21 223433 33333333334579999988887
Q ss_pred -CHHHHHHHHHCCCCeEEe--CCCCHHHHHHHHHHHHHHhccC
Q 004001 173 -SMGLVFKCLSKGAVDFLV--KPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 173 -~~e~~~~al~aGAddyL~--KP~~~eeL~~~L~~llrr~~~~ 212 (780)
+.+.+.+|++.|+..+.. |.+..++.....+++.+.++..
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~ 127 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAV 127 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 567899999999999887 7888889888888887776544
Done!