Query 004001
Match_columns 780
No_of_seqs 780 out of 2866
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 2.5E-25 8.7E-30 211.6 15.4 121 86-208 11-133 (134)
2 3mm4_A Histidine kinase homolo 99.9 8.9E-25 3E-29 219.0 15.5 167 34-210 16-198 (206)
3 3gl9_A Response regulator; bet 99.9 4.3E-21 1.5E-25 174.8 17.1 118 88-207 3-121 (122)
4 3t6k_A Response regulator rece 99.9 6.2E-21 2.1E-25 176.9 17.4 123 86-210 3-126 (136)
5 2lpm_A Two-component response 99.8 9.6E-23 3.3E-27 191.4 0.8 114 85-207 6-121 (123)
6 3h1g_A Chemotaxis protein CHEY 99.8 3.4E-20 1.2E-24 169.8 15.9 121 86-207 4-126 (129)
7 3f6p_A Transcriptional regulat 99.8 5.8E-20 2E-24 166.5 15.9 116 88-208 3-119 (120)
8 3kht_A Response regulator; PSI 99.8 1.2E-19 4.2E-24 168.6 17.1 128 85-214 3-134 (144)
9 3gt7_A Sensor protein; structu 99.8 1.8E-19 6.3E-24 170.5 18.1 124 86-211 6-130 (154)
10 3m6m_D Sensory/regulatory prot 99.8 1.7E-19 6E-24 168.8 17.0 122 85-208 12-136 (143)
11 3r0j_A Possible two component 99.8 1.9E-19 6.5E-24 184.5 18.2 121 86-210 22-143 (250)
12 2r25_B Osmosensing histidine p 99.8 2E-19 6.8E-24 166.2 16.6 121 88-209 3-128 (133)
13 3crn_A Response regulator rece 99.8 3.5E-19 1.2E-23 163.7 18.1 120 87-210 3-123 (132)
14 3rqi_A Response regulator prot 99.8 5.4E-20 1.9E-24 180.0 13.5 122 85-210 5-127 (184)
15 3heb_A Response regulator rece 99.8 4.5E-19 1.5E-23 166.5 18.8 127 87-213 4-140 (152)
16 2pl1_A Transcriptional regulat 99.8 6.8E-19 2.3E-23 157.8 18.7 118 88-209 1-119 (121)
17 1dbw_A Transcriptional regulat 99.8 4.7E-19 1.6E-23 161.0 17.7 119 86-208 2-121 (126)
18 3grc_A Sensor protein, kinase; 99.8 1.3E-19 4.6E-24 167.2 14.3 126 86-213 5-132 (140)
19 3i42_A Response regulator rece 99.8 1E-19 3.5E-24 165.3 13.0 121 86-209 2-123 (127)
20 1jbe_A Chemotaxis protein CHEY 99.8 5.3E-19 1.8E-23 160.4 17.7 122 86-209 3-126 (128)
21 3hzh_A Chemotaxis response reg 99.8 2.6E-19 8.8E-24 170.0 15.2 121 85-207 34-156 (157)
22 3c3m_A Response regulator rece 99.8 3.6E-19 1.2E-23 164.9 15.5 121 87-209 3-124 (138)
23 3jte_A Response regulator rece 99.8 9.4E-19 3.2E-23 162.1 18.3 124 86-211 2-126 (143)
24 1xhf_A DYE resistance, aerobic 99.8 1.1E-18 3.7E-23 157.3 17.9 118 87-209 3-121 (123)
25 3luf_A Two-component system re 99.8 4.9E-19 1.7E-23 184.1 17.8 128 86-214 123-251 (259)
26 1zgz_A Torcad operon transcrip 99.8 1.3E-18 4.4E-23 156.5 18.2 117 88-209 3-120 (122)
27 1srr_A SPO0F, sporulation resp 99.8 4.4E-19 1.5E-23 160.4 15.0 117 87-207 3-120 (124)
28 3nhm_A Response regulator; pro 99.8 5.8E-19 2E-23 161.2 15.7 123 87-213 4-127 (133)
29 1p6q_A CHEY2; chemotaxis, sign 99.8 3.1E-19 1.1E-23 162.2 13.7 120 87-208 6-127 (129)
30 1mb3_A Cell division response 99.8 3.9E-19 1.3E-23 160.1 14.2 119 88-208 2-121 (124)
31 1i3c_A Response regulator RCP1 99.8 1.7E-18 6E-23 162.6 19.2 125 86-210 7-139 (149)
32 3b2n_A Uncharacterized protein 99.8 6.7E-19 2.3E-23 162.0 15.8 121 87-211 3-126 (133)
33 3hv2_A Response regulator/HD d 99.8 1.1E-18 3.9E-23 164.3 17.7 121 86-210 13-135 (153)
34 3kto_A Response regulator rece 99.8 2.6E-19 8.9E-24 165.4 13.0 124 86-213 5-131 (136)
35 2qzj_A Two-component response 99.8 1.2E-18 4.2E-23 161.4 17.1 121 87-212 4-125 (136)
36 3cnb_A DNA-binding response re 99.8 1.5E-18 5.1E-23 159.7 17.6 125 86-212 7-134 (143)
37 3eod_A Protein HNR; response r 99.8 7.1E-19 2.4E-23 160.3 15.1 121 85-209 5-127 (130)
38 2zay_A Response regulator rece 99.8 8.1E-19 2.8E-23 163.3 15.5 126 85-212 6-132 (147)
39 3hdv_A Response regulator; PSI 99.8 1.5E-18 5.1E-23 159.4 17.1 123 86-210 6-129 (136)
40 4e7p_A Response regulator; DNA 99.8 1.1E-18 3.8E-23 163.8 16.3 121 85-209 18-141 (150)
41 2a9o_A Response regulator; ess 99.8 1.7E-18 5.7E-23 154.8 16.7 116 88-208 2-118 (120)
42 1tmy_A CHEY protein, TMY; chem 99.8 1.2E-18 4.2E-23 156.3 15.8 115 88-206 3-119 (120)
43 3lua_A Response regulator rece 99.8 3.4E-19 1.2E-23 164.8 12.4 125 87-212 4-131 (140)
44 1k68_A Phytochrome response re 99.8 2.7E-18 9.3E-23 156.8 18.2 126 87-212 2-135 (140)
45 3h5i_A Response regulator/sens 99.8 5E-19 1.7E-23 164.3 13.3 124 85-212 3-128 (140)
46 3n0r_A Response regulator; sig 99.8 1.6E-19 5.4E-24 191.4 11.2 118 87-211 160-280 (286)
47 3cg4_A Response regulator rece 99.8 4E-19 1.4E-23 164.1 12.4 127 86-214 6-133 (142)
48 3hdg_A Uncharacterized protein 99.8 9.3E-19 3.2E-23 161.0 14.7 123 86-212 6-129 (137)
49 2jba_A Phosphate regulon trans 99.8 2.8E-19 9.6E-24 161.7 10.7 120 88-209 3-123 (127)
50 1k66_A Phytochrome response re 99.8 2.8E-18 9.6E-23 158.7 17.6 128 85-212 4-142 (149)
51 3cfy_A Putative LUXO repressor 99.8 2E-18 6.8E-23 160.2 15.8 119 88-210 5-124 (137)
52 3f6c_A Positive transcription 99.8 7.8E-19 2.7E-23 160.6 12.4 121 88-212 2-124 (134)
53 3n53_A Response regulator rece 99.8 6E-19 2.1E-23 163.1 11.5 122 86-210 2-124 (140)
54 3ilh_A Two component response 99.8 2.7E-18 9.3E-23 158.6 15.9 124 86-209 8-140 (146)
55 1zh2_A KDP operon transcriptio 99.8 3.6E-18 1.2E-22 152.8 16.2 117 88-209 2-119 (121)
56 3snk_A Response regulator CHEY 99.8 2.6E-19 9E-24 164.9 8.8 119 86-208 13-133 (135)
57 1mvo_A PHOP response regulator 99.8 2.9E-18 9.8E-23 157.2 15.6 119 87-209 3-122 (136)
58 2ayx_A Sensor kinase protein R 99.8 3.3E-18 1.1E-22 177.0 17.8 122 85-210 127-249 (254)
59 3cg0_A Response regulator rece 99.8 4.2E-18 1.4E-22 156.5 16.6 123 86-213 8-133 (140)
60 1dz3_A Stage 0 sporulation pro 99.8 1.9E-18 6.3E-23 157.9 13.9 119 88-209 3-124 (130)
61 3lte_A Response regulator; str 99.8 5.4E-18 1.8E-22 154.6 16.9 121 86-209 5-126 (132)
62 4dad_A Putative pilus assembly 99.8 1.1E-18 3.9E-23 162.4 12.5 123 86-210 19-143 (146)
63 2qr3_A Two-component system re 99.8 4E-18 1.4E-22 156.7 15.3 121 86-210 2-128 (140)
64 1dcf_A ETR1 protein; beta-alph 99.8 4E-18 1.4E-22 156.8 15.3 121 85-208 5-129 (136)
65 2rjn_A Response regulator rece 99.8 9.3E-18 3.2E-22 157.9 17.4 122 85-210 5-128 (154)
66 2gkg_A Response regulator homo 99.8 3.9E-18 1.3E-22 153.2 13.4 119 86-207 4-124 (127)
67 3kcn_A Adenylate cyclase homol 99.8 1.1E-17 3.7E-22 157.2 16.4 121 86-210 3-125 (151)
68 3eul_A Possible nitrate/nitrit 99.8 1.3E-17 4.6E-22 156.5 16.5 122 86-211 14-138 (152)
69 3q9s_A DNA-binding response re 99.8 4.9E-18 1.7E-22 175.0 14.6 120 85-209 35-155 (249)
70 1yio_A Response regulatory pro 99.8 4.6E-18 1.6E-22 168.1 13.8 119 87-209 4-123 (208)
71 3a10_A Response regulator; pho 99.8 5.2E-18 1.8E-22 151.2 12.6 113 88-206 2-115 (116)
72 1kgs_A DRRD, DNA binding respo 99.8 1.1E-17 3.6E-22 167.2 16.2 120 87-210 2-122 (225)
73 3cz5_A Two-component response 99.7 1E-17 3.5E-22 157.4 14.7 121 85-209 3-126 (153)
74 3dzd_A Transcriptional regulat 99.7 6.4E-18 2.2E-22 185.4 15.3 119 89-211 2-121 (368)
75 2qxy_A Response regulator; reg 99.7 1.3E-17 4.6E-22 154.1 15.0 121 87-211 4-124 (142)
76 1qkk_A DCTD, C4-dicarboxylate 99.7 1.8E-17 6.3E-22 156.0 15.7 120 87-210 3-123 (155)
77 1a04_A Nitrate/nitrite respons 99.7 1.7E-17 5.7E-22 165.2 16.2 120 86-209 4-126 (215)
78 3cu5_A Two component transcrip 99.7 6.1E-18 2.1E-22 157.7 12.0 119 88-210 3-125 (141)
79 1w25_A Stalked-cell differenti 99.7 2E-17 6.9E-22 183.9 16.9 120 88-209 2-122 (459)
80 3eq2_A Probable two-component 99.7 9.3E-18 3.2E-22 183.7 13.6 119 86-208 4-124 (394)
81 1s8n_A Putative antiterminator 99.7 1.8E-17 6.3E-22 164.0 14.4 118 87-209 13-132 (205)
82 1ys7_A Transcriptional regulat 99.7 1.5E-17 5E-22 167.0 13.9 121 86-210 6-127 (233)
83 2rdm_A Response regulator rece 99.7 4.6E-17 1.6E-21 148.1 15.8 121 85-211 3-126 (132)
84 2jk1_A HUPR, hydrogenase trans 99.7 4.4E-17 1.5E-21 150.7 15.9 116 89-209 3-120 (139)
85 2qvg_A Two component response 99.7 3.5E-17 1.2E-21 151.2 15.0 122 86-207 6-134 (143)
86 2pln_A HP1043, response regula 99.7 6.8E-17 2.3E-21 148.8 16.5 117 85-209 16-134 (137)
87 3eqz_A Response regulator; str 99.7 5.3E-18 1.8E-22 154.6 8.3 119 86-209 2-126 (135)
88 2qv0_A Protein MRKE; structura 99.7 9.4E-17 3.2E-21 148.6 16.3 122 86-213 8-132 (143)
89 2oqr_A Sensory transduction pr 99.7 3.8E-17 1.3E-21 164.0 13.7 118 87-209 4-122 (230)
90 1ny5_A Transcriptional regulat 99.7 6.5E-17 2.2E-21 178.4 16.7 118 88-209 1-119 (387)
91 2qsj_A DNA-binding response re 99.7 4.8E-17 1.6E-21 152.7 13.2 122 86-210 2-126 (154)
92 2gwr_A DNA-binding response re 99.7 3.4E-17 1.1E-21 166.3 12.6 117 87-208 5-122 (238)
93 3c97_A Signal transduction his 99.7 4.9E-17 1.7E-21 150.5 12.3 118 87-209 10-131 (140)
94 2j48_A Two-component sensor ki 99.7 5.6E-17 1.9E-21 142.9 11.6 114 88-206 2-116 (119)
95 3bre_A Probable two-component 99.7 5.6E-17 1.9E-21 173.9 13.8 119 87-207 18-138 (358)
96 3kyj_B CHEY6 protein, putative 99.7 8.3E-17 2.8E-21 149.9 12.0 111 86-201 12-128 (145)
97 3t8y_A CHEB, chemotaxis respon 99.7 2E-16 6.7E-21 151.7 14.7 119 85-208 23-155 (164)
98 3c3w_A Two component transcrip 99.7 3.1E-17 1.1E-21 165.6 9.0 119 88-210 2-123 (225)
99 1p2f_A Response regulator; DRR 99.7 2.1E-16 7.3E-21 157.7 14.5 116 87-209 2-118 (220)
100 1dc7_A NTRC, nitrogen regulati 99.7 2E-18 6.7E-23 154.8 -0.6 119 87-209 3-122 (124)
101 3klo_A Transcriptional regulat 99.7 3.5E-17 1.2E-21 164.7 7.6 121 86-209 6-130 (225)
102 3sy8_A ROCR; TIM barrel phosph 99.7 1.8E-16 6.3E-21 174.6 12.6 122 86-210 2-130 (400)
103 1qo0_D AMIR; binding protein, 99.7 1.3E-16 4.6E-21 156.6 9.8 116 85-209 10-126 (196)
104 2b4a_A BH3024; flavodoxin-like 99.6 2.4E-16 8.2E-21 145.3 8.7 118 84-208 12-131 (138)
105 2hqr_A Putative transcriptiona 99.6 7.9E-16 2.7E-20 153.9 13.1 114 88-208 1-115 (223)
106 1a2o_A CHEB methylesterase; ba 99.6 7.1E-15 2.4E-19 160.3 15.1 118 86-208 2-133 (349)
107 2vyc_A Biodegradative arginine 99.6 4.4E-15 1.5E-19 176.9 9.6 120 88-210 1-135 (755)
108 3luf_A Two-component system re 99.6 7.6E-15 2.6E-19 152.5 10.1 108 88-203 5-114 (259)
109 1w25_A Stalked-cell differenti 99.0 2.9E-09 9.8E-14 118.3 17.6 120 86-209 151-271 (459)
110 3cwo_X Beta/alpha-barrel prote 98.9 8.5E-10 2.9E-14 110.2 4.3 92 112-207 6-100 (237)
111 3q7r_A Transcriptional regulat 97.2 0.0024 8.1E-08 57.5 10.2 104 88-208 13-118 (121)
112 2ayx_A Sensor kinase protein R 97.1 0.00041 1.4E-08 71.1 5.8 96 85-207 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 97.1 0.00078 2.7E-08 79.9 8.4 104 100-209 19-124 (715)
114 2yxb_A Coenzyme B12-dependent 96.6 0.04 1.4E-06 53.4 15.0 120 86-209 17-146 (161)
115 3cwo_X Beta/alpha-barrel prote 95.5 0.032 1.1E-06 55.0 8.2 82 118-203 130-221 (237)
116 1ccw_A Protein (glutamate muta 94.9 0.33 1.1E-05 45.6 12.9 114 89-206 5-134 (137)
117 3kp1_A D-ornithine aminomutase 94.4 0.34 1.2E-05 56.3 13.5 177 28-209 535-736 (763)
118 1b3q_A Protein (chemotaxis pro 94.1 0.0059 2E-07 66.8 -1.5 88 22-109 210-309 (379)
119 3jz3_A Sensor protein QSEC; he 93.5 0.031 1.1E-06 54.3 2.6 58 2-59 151-216 (222)
120 2c2a_A Sensor histidine kinase 93.2 0.031 1.1E-06 56.4 2.1 38 22-59 210-247 (258)
121 1mu5_A Type II DNA topoisomera 92.9 0.019 6.4E-07 65.0 0.0 180 23-207 109-303 (471)
122 3d36_A Sporulation kinase B; G 91.8 0.088 3E-06 51.9 3.4 57 3-60 162-225 (244)
123 1xrs_B D-lysine 5,6-aminomutas 91.6 0.97 3.3E-05 47.3 11.0 118 86-208 119-258 (262)
124 4ew8_A Sensor protein DIVL; si 91.4 0.083 2.9E-06 53.2 2.7 57 3-60 194-256 (268)
125 1y80_A Predicted cobalamin bin 91.2 0.68 2.3E-05 46.1 9.1 99 87-190 88-196 (210)
126 1ysr_A Sensor-type histidine k 90.8 0.13 4.6E-06 47.1 3.3 37 23-59 112-148 (150)
127 1i58_A Chemotaxis protein CHEA 90.6 0.13 4.3E-06 49.5 3.0 39 21-59 150-188 (189)
128 1wv2_A Thiazole moeity, thiazo 90.5 1.8 6.1E-05 45.3 11.6 97 103-206 127-236 (265)
129 3ogl_Q JAZ1 incomplete degron 90.4 0.13 4.4E-06 33.4 1.9 18 723-740 4-21 (21)
130 3q58_A N-acetylmannosamine-6-p 90.0 1.4 4.9E-05 44.9 10.4 87 97-190 115-209 (229)
131 3ezx_A MMCP 1, monomethylamine 89.8 0.63 2.1E-05 47.1 7.5 99 87-190 92-202 (215)
132 2i2x_B MTAC, methyltransferase 89.8 2.8 9.4E-05 43.3 12.5 110 87-206 123-242 (258)
133 2q8g_A [pyruvate dehydrogenase 89.7 0.18 6.1E-06 55.2 3.7 39 22-60 325-363 (407)
134 2btz_A Pyruvate dehydrogenase 89.6 0.18 6.3E-06 54.8 3.7 38 22-59 312-349 (394)
135 1y8o_A [pyruvate dehydrogenase 89.5 0.17 5.9E-06 55.7 3.4 39 22-60 336-374 (419)
136 2xij_A Methylmalonyl-COA mutas 89.5 2.6 8.8E-05 50.3 13.3 121 86-210 603-733 (762)
137 1gkz_A [3-methyl-2-oxobutanoat 89.3 0.11 3.7E-06 56.5 1.5 39 21-59 334-372 (388)
138 1id0_A PHOQ histidine kinase; 88.7 0.14 4.6E-06 47.0 1.5 37 23-59 108-144 (152)
139 3igs_A N-acetylmannosamine-6-p 88.6 2 6.9E-05 43.8 10.4 87 97-190 115-209 (232)
140 1req_A Methylmalonyl-COA mutas 88.5 2.7 9.2E-05 49.9 12.5 119 86-208 595-723 (727)
141 2e0a_A Pyruvate dehydrogenase 88.3 0.2 6.9E-06 54.5 2.8 39 22-60 312-350 (394)
142 3ogk_Q JAZ1 incomplete degron 88.0 0.12 4.2E-06 34.0 0.5 19 725-743 1-19 (22)
143 3sl2_A Sensor histidine kinase 86.3 0.52 1.8E-05 44.6 4.1 41 22-62 114-154 (177)
144 3ehg_A Sensor kinase (YOCF pro 86.2 0.17 6E-06 45.6 0.6 38 21-60 89-126 (128)
145 1bxd_A ENVZ(290-450), protein 86.2 0.48 1.6E-05 44.0 3.7 38 22-59 112-149 (161)
146 1r62_A Nitrogen regulation pro 85.7 0.32 1.1E-05 44.6 2.1 36 23-59 123-158 (160)
147 2htm_A Thiazole biosynthesis p 84.6 4.3 0.00015 42.5 10.2 97 104-206 117-227 (268)
148 3qja_A IGPS, indole-3-glycerol 84.2 8.9 0.0003 40.0 12.6 98 89-190 138-241 (272)
149 3zxq_A Hypoxia sensor histidin 82.7 0.62 2.1E-05 41.2 2.7 35 25-59 88-122 (124)
150 1xi3_A Thiamine phosphate pyro 82.3 11 0.00037 36.8 11.8 74 110-190 107-189 (215)
151 2zbk_B Type 2 DNA topoisomeras 81.6 0.22 7.6E-06 57.1 -1.0 178 24-209 109-304 (530)
152 3fkq_A NTRC-like two-domain pr 81.3 8.7 0.0003 41.4 11.6 104 85-206 19-126 (373)
153 3ffs_A Inosine-5-monophosphate 80.5 16 0.00055 40.3 13.5 101 87-190 156-274 (400)
154 1yad_A Regulatory protein TENI 79.4 14 0.00048 36.5 11.6 91 111-208 110-214 (221)
155 2ekc_A AQ_1548, tryptophan syn 78.3 6.4 0.00022 40.6 8.9 72 132-205 43-143 (262)
156 3zxo_A Redox sensor histidine 78.1 1 3.5E-05 39.9 2.5 36 24-59 91-127 (129)
157 4fo4_A Inosine 5'-monophosphat 77.9 24 0.00083 38.4 13.7 101 87-190 120-239 (366)
158 2bfw_A GLGA glycogen synthase; 77.3 19 0.00066 33.7 11.5 107 86-207 69-179 (200)
159 3ehh_A Sensor kinase (YOCF pro 76.9 1.2 4E-05 43.3 2.7 35 24-60 182-216 (218)
160 3tsm_A IGPS, indole-3-glycerol 76.1 23 0.00078 37.0 12.4 95 99-198 157-261 (272)
161 3o63_A Probable thiamine-phosp 75.8 17 0.00059 37.2 11.2 87 116-207 141-240 (243)
162 3f4w_A Putative hexulose 6 pho 75.0 17 0.00059 35.4 10.7 114 89-207 79-208 (211)
163 3a0r_A Sensor protein; four he 74.3 0.69 2.4E-05 48.0 0.3 37 22-59 307-344 (349)
164 3vnd_A TSA, tryptophan synthas 72.6 5.9 0.0002 41.4 6.9 56 148-205 83-144 (267)
165 3a0y_A Sensor protein; ATP-LID 72.5 1.1 3.7E-05 40.7 1.1 36 22-58 110-146 (152)
166 3fwz_A Inner membrane protein 71.2 21 0.00073 32.4 9.7 94 86-190 29-124 (140)
167 3rht_A (gatase1)-like protein; 71.2 2 6.8E-05 44.8 2.8 50 88-141 5-58 (259)
168 1r8j_A KAIA; circadian clock p 70.7 20 0.0007 37.5 10.1 120 86-209 8-130 (289)
169 1geq_A Tryptophan synthase alp 70.0 9.2 0.00032 38.4 7.5 50 148-200 69-124 (248)
170 1xm3_A Thiazole biosynthesis p 68.8 20 0.00069 37.0 9.9 74 111-190 126-206 (264)
171 1qop_A Tryptophan synthase alp 68.7 5.7 0.00019 41.1 5.7 72 132-205 43-143 (268)
172 2l69_A Rossmann 2X3 fold prote 67.3 32 0.0011 30.5 9.2 118 88-210 3-125 (134)
173 2q5c_A NTRC family transcripti 67.3 56 0.0019 32.1 12.4 117 88-207 5-140 (196)
174 3usb_A Inosine-5'-monophosphat 67.2 61 0.0021 36.7 14.2 101 87-190 268-387 (511)
175 3c48_A Predicted glycosyltrans 67.0 20 0.00069 38.1 9.8 108 87-207 276-390 (438)
176 1h1y_A D-ribulose-5-phosphate 66.9 34 0.0012 34.1 10.9 100 103-207 105-222 (228)
177 2oo3_A Protein involved in cat 66.2 6.7 0.00023 41.4 5.6 68 88-155 114-183 (283)
178 2gjl_A Hypothetical protein PA 66.2 44 0.0015 35.2 12.1 82 103-190 110-200 (328)
179 2gek_A Phosphatidylinositol ma 66.1 16 0.00055 38.1 8.7 106 87-207 240-348 (406)
180 2tps_A Protein (thiamin phosph 65.8 30 0.001 34.0 10.1 86 116-207 122-221 (227)
181 2f9f_A First mannosyl transfer 65.6 31 0.001 32.2 9.8 108 86-208 49-162 (177)
182 4dzz_A Plasmid partitioning pr 65.1 16 0.00053 34.8 7.7 65 86-154 29-95 (206)
183 3bo9_A Putative nitroalkan dio 63.6 53 0.0018 34.7 12.2 82 103-190 116-204 (326)
184 3kts_A Glycerol uptake operon 63.2 25 0.00087 35.0 8.9 88 91-190 85-178 (192)
185 2c6q_A GMP reductase 2; TIM ba 63.0 78 0.0027 34.0 13.5 104 87-193 132-255 (351)
186 3khj_A Inosine-5-monophosphate 62.2 54 0.0019 35.4 12.1 100 88-190 118-235 (361)
187 3r2g_A Inosine 5'-monophosphat 62.1 60 0.002 35.3 12.4 97 87-190 112-227 (361)
188 2v82_A 2-dehydro-3-deoxy-6-pho 62.0 38 0.0013 33.0 10.1 96 105-207 95-198 (212)
189 3l4e_A Uncharacterized peptida 61.9 29 0.001 34.5 9.2 65 85-156 25-99 (206)
190 4a29_A Engineered retro-aldol 61.6 1E+02 0.0035 32.0 13.4 98 90-191 130-233 (258)
191 1geq_A Tryptophan synthase alp 61.5 30 0.001 34.6 9.3 85 100-191 122-220 (248)
192 3fro_A GLGA glycogen synthase; 61.4 55 0.0019 34.2 11.9 107 86-207 284-394 (439)
193 2xci_A KDO-transferase, 3-deox 61.2 17 0.00058 38.9 7.8 110 87-208 225-346 (374)
194 1ujp_A Tryptophan synthase alp 61.1 10 0.00034 39.6 5.8 69 134-205 43-140 (271)
195 2iw1_A Lipopolysaccharide core 60.9 26 0.00088 36.1 9.0 106 87-207 228-336 (374)
196 3bul_A Methionine synthase; tr 60.7 17 0.0006 42.0 8.2 100 87-190 98-210 (579)
197 1ka9_F Imidazole glycerol phos 59.6 49 0.0017 33.0 10.5 77 121-202 155-242 (252)
198 3bw2_A 2-nitropropane dioxygen 58.9 78 0.0027 33.9 12.6 78 107-190 141-236 (369)
199 2lci_A Protein OR36; structura 58.8 23 0.00077 31.5 6.7 39 91-129 81-119 (134)
200 1eep_A Inosine 5'-monophosphat 58.6 78 0.0027 34.4 12.7 91 97-190 179-284 (404)
201 4avf_A Inosine-5'-monophosphat 58.6 1.1E+02 0.0038 34.3 14.2 101 87-190 241-360 (490)
202 1rzu_A Glycogen synthase 1; gl 58.0 48 0.0017 35.8 11.0 108 87-207 320-439 (485)
203 4e5v_A Putative THUA-like prot 57.8 5.7 0.0002 41.7 3.3 80 86-170 3-94 (281)
204 3s83_A Ggdef family protein; s 57.7 24 0.00082 35.5 7.9 100 102-204 143-254 (259)
205 2v5j_A 2,4-dihydroxyhept-2-ENE 57.7 98 0.0034 32.3 12.8 98 103-204 30-132 (287)
206 3inp_A D-ribulose-phosphate 3- 57.2 18 0.0006 37.4 6.8 83 119-205 41-130 (246)
207 1thf_D HISF protein; thermophI 56.8 68 0.0023 31.9 11.1 78 120-202 153-241 (253)
208 2r60_A Glycosyl transferase, g 56.7 37 0.0013 37.0 9.8 95 100-207 321-423 (499)
209 2z6i_A Trans-2-enoyl-ACP reduc 56.7 65 0.0022 34.0 11.4 80 105-190 104-190 (332)
210 2qzs_A Glycogen synthase; glyc 55.5 46 0.0016 36.0 10.2 108 87-207 321-440 (485)
211 3rc1_A Sugar 3-ketoreductase; 55.4 64 0.0022 34.1 11.1 106 84-205 24-136 (350)
212 4eyg_A Twin-arginine transloca 55.4 67 0.0023 33.0 11.1 85 88-175 140-236 (368)
213 3qhp_A Type 1 capsular polysac 55.3 38 0.0013 30.7 8.2 105 87-207 32-139 (166)
214 1vzw_A Phosphoribosyl isomeras 54.9 49 0.0017 32.9 9.6 79 119-202 147-239 (244)
215 1y0e_A Putative N-acetylmannos 54.8 68 0.0023 31.3 10.5 86 100-191 107-204 (223)
216 3l9w_A Glutathione-regulated p 54.4 27 0.00093 38.4 8.2 95 86-190 26-121 (413)
217 3l0g_A Nicotinate-nucleotide p 53.6 16 0.00055 38.8 5.9 91 90-189 181-277 (300)
218 2vws_A YFAU, 2-keto-3-deoxy su 53.3 1.4E+02 0.0047 30.6 12.9 98 103-204 9-111 (267)
219 1h5y_A HISF; histidine biosynt 52.7 67 0.0023 31.5 10.1 79 119-202 155-244 (253)
220 2d00_A V-type ATP synthase sub 51.9 56 0.0019 29.4 8.4 76 86-170 2-80 (109)
221 2fhp_A Methylase, putative; al 51.6 84 0.0029 28.9 10.1 68 88-155 68-139 (187)
222 3okp_A GDP-mannose-dependent a 51.5 27 0.00094 36.1 7.3 75 119-207 262-343 (394)
223 1rd5_A Tryptophan synthase alp 51.5 23 0.00078 36.1 6.5 85 101-190 133-229 (262)
224 3ovp_A Ribulose-phosphate 3-ep 51.3 43 0.0015 33.8 8.5 100 102-207 103-218 (228)
225 1ep3_A Dihydroorotate dehydrog 51.1 82 0.0028 32.4 10.9 106 99-209 152-294 (311)
226 1qop_A Tryptophan synthase alp 50.5 56 0.0019 33.5 9.4 96 90-190 126-233 (268)
227 3qz6_A HPCH/HPAI aldolase; str 50.2 94 0.0032 31.9 11.0 100 103-205 6-110 (261)
228 1th8_A Anti-sigma F factor; SP 49.7 3.4 0.00012 37.6 -0.1 54 3-60 81-139 (145)
229 1ka9_F Imidazole glycerol phos 49.5 71 0.0024 31.8 9.8 67 119-190 32-103 (252)
230 4fxs_A Inosine-5'-monophosphat 49.4 1.6E+02 0.0054 33.1 13.5 101 87-190 243-362 (496)
231 2fli_A Ribulose-phosphate 3-ep 48.7 24 0.00083 34.5 6.0 98 102-203 100-215 (220)
232 2y88_A Phosphoribosyl isomeras 48.7 35 0.0012 33.9 7.3 77 120-201 151-241 (244)
233 2w6r_A Imidazole glycerol phos 48.6 59 0.002 32.7 9.1 77 120-201 158-245 (266)
234 1jcn_A Inosine monophosphate d 48.5 1.2E+02 0.0042 33.9 12.5 90 98-193 282-390 (514)
235 1qdl_B Protein (anthranilate s 48.5 10 0.00034 37.0 3.1 48 90-139 4-51 (195)
236 1yxy_A Putative N-acetylmannos 47.8 76 0.0026 31.3 9.6 85 99-190 120-214 (234)
237 1ypf_A GMP reductase; GUAC, pu 47.8 2.6E+02 0.009 29.4 14.4 96 89-190 122-238 (336)
238 3p9n_A Possible methyltransfer 47.7 65 0.0022 30.2 8.7 79 89-169 69-153 (189)
239 2r6o_A Putative diguanylate cy 47.4 34 0.0012 35.6 7.2 100 102-204 167-278 (294)
240 1x1o_A Nicotinate-nucleotide p 47.2 51 0.0018 34.6 8.5 93 89-190 168-267 (286)
241 2yw3_A 4-hydroxy-2-oxoglutarat 47.1 86 0.0029 31.0 9.8 94 108-209 101-201 (207)
242 3nav_A Tryptophan synthase alp 47.0 22 0.00075 37.1 5.6 55 148-204 85-145 (271)
243 3tqv_A Nicotinate-nucleotide p 46.7 32 0.0011 36.3 6.8 90 90-189 172-268 (287)
244 4e38_A Keto-hydroxyglutarate-a 46.5 44 0.0015 34.1 7.6 94 103-201 27-122 (232)
245 1rd5_A Tryptophan synthase alp 46.3 23 0.0008 36.0 5.7 54 147-204 82-138 (262)
246 1wa3_A 2-keto-3-deoxy-6-phosph 46.1 46 0.0016 32.2 7.5 96 103-207 96-198 (205)
247 1z0s_A Probable inorganic poly 45.8 13 0.00043 39.2 3.5 94 87-207 29-122 (278)
248 3td9_A Branched chain amino ac 45.7 90 0.0031 32.1 10.2 86 87-177 149-245 (366)
249 2x6q_A Trehalose-synthase TRET 45.6 1.4E+02 0.0049 31.2 12.0 71 122-207 308-378 (416)
250 3p9z_A Uroporphyrinogen III co 45.6 1E+02 0.0036 30.4 10.3 109 86-206 109-225 (229)
251 3oy2_A Glycosyltransferase B73 45.3 66 0.0022 33.7 9.2 107 87-207 215-354 (413)
252 1qo2_A Molecule: N-((5-phospho 45.2 83 0.0028 31.3 9.5 78 119-202 145-240 (241)
253 3h5l_A Putative branched-chain 45.1 95 0.0032 32.8 10.5 85 88-176 165-260 (419)
254 2qfm_A Spermine synthase; sper 44.9 56 0.0019 35.6 8.6 67 88-154 212-296 (364)
255 2iuy_A Avigt4, glycosyltransfe 44.8 45 0.0016 34.1 7.7 54 86-141 2-92 (342)
256 1dxe_A 2-dehydro-3-deoxy-galac 44.7 1.8E+02 0.0062 29.5 12.1 99 103-204 10-112 (256)
257 3u3x_A Oxidoreductase; structu 44.6 62 0.0021 34.4 8.9 106 85-205 24-135 (361)
258 2jjm_A Glycosyl transferase, g 44.3 33 0.0011 35.9 6.6 65 134-207 285-349 (394)
259 1tqj_A Ribulose-phosphate 3-ep 44.3 41 0.0014 33.8 7.0 81 119-205 18-108 (230)
260 1vc4_A Indole-3-glycerol phosp 44.1 41 0.0014 34.5 7.1 96 89-190 131-235 (254)
261 2p10_A MLL9387 protein; putati 43.9 1E+02 0.0036 32.4 10.1 81 108-191 160-259 (286)
262 3rot_A ABC sugar transporter, 43.6 1E+02 0.0034 30.9 9.9 66 100-172 22-96 (297)
263 1v4v_A UDP-N-acetylglucosamine 43.4 1.1E+02 0.0037 31.6 10.4 59 134-207 275-333 (376)
264 1qpo_A Quinolinate acid phosph 43.3 68 0.0023 33.7 8.7 94 90-189 168-267 (284)
265 3beo_A UDP-N-acetylglucosamine 43.0 1.3E+02 0.0046 30.7 11.0 59 134-207 283-341 (375)
266 2px2_A Genome polyprotein [con 42.6 33 0.0011 35.8 6.0 62 132-208 138-201 (269)
267 1tqx_A D-ribulose-5-phosphate 41.9 1.1E+02 0.0036 31.0 9.6 97 106-206 109-221 (227)
268 1vgv_A UDP-N-acetylglucosamine 41.8 1E+02 0.0034 31.9 9.9 42 161-207 300-341 (384)
269 3ec7_A Putative dehydrogenase; 41.5 77 0.0026 33.6 9.0 110 83-206 19-135 (357)
270 3e18_A Oxidoreductase; dehydro 41.5 83 0.0028 33.3 9.3 105 85-206 3-113 (359)
271 3ia7_A CALG4; glycosysltransfe 41.3 56 0.0019 34.0 7.8 9 132-140 101-109 (402)
272 1req_B Methylmalonyl-COA mutas 41.3 31 0.001 40.4 6.1 97 100-204 527-631 (637)
273 4gmf_A Yersiniabactin biosynth 40.9 1E+02 0.0034 33.4 9.9 101 86-207 6-117 (372)
274 3paj_A Nicotinate-nucleotide p 40.8 1.1E+02 0.0037 32.8 9.8 92 89-189 204-301 (320)
275 2yjp_A Putative ABC transporte 40.6 5.8 0.0002 40.2 0.0 14 609-622 3-16 (291)
276 3lab_A Putative KDPG (2-keto-3 40.4 43 0.0015 33.9 6.4 55 144-202 48-102 (217)
277 3ic5_A Putative saccharopine d 40.0 1.2E+02 0.004 25.6 8.5 90 87-188 5-97 (118)
278 2fpo_A Methylase YHHF; structu 39.9 58 0.002 31.3 7.2 65 89-156 79-146 (202)
279 3jy6_A Transcriptional regulat 39.2 99 0.0034 30.5 9.0 62 100-171 26-94 (276)
280 3snr_A Extracellular ligand-bi 39.2 75 0.0026 32.3 8.3 86 88-178 136-232 (362)
281 3dty_A Oxidoreductase, GFO/IDH 39.0 1.1E+02 0.0038 32.8 9.9 111 85-205 10-132 (398)
282 2ift_A Putative methylase HI07 39.0 35 0.0012 32.9 5.3 65 89-155 78-148 (201)
283 3sgz_A Hydroxyacid oxidase 2; 38.8 1.9E+02 0.0066 31.2 11.6 89 98-190 204-300 (352)
284 4adt_A Pyridoxine biosynthetic 38.8 2.3E+02 0.0078 29.8 11.9 59 147-208 195-260 (297)
285 3duw_A OMT, O-methyltransferas 38.5 2.6E+02 0.0091 26.5 11.8 79 88-170 84-167 (223)
286 2w6r_A Imidazole glycerol phos 38.5 80 0.0027 31.7 8.2 68 119-191 31-103 (266)
287 3gjy_A Spermidine synthase; AP 38.2 57 0.002 34.7 7.3 69 86-156 112-188 (317)
288 3e8x_A Putative NAD-dependent 38.1 35 0.0012 33.2 5.3 57 83-141 17-74 (236)
289 2h6r_A Triosephosphate isomera 38.0 2.2E+02 0.0074 28.2 11.2 92 105-201 105-214 (219)
290 3v5n_A Oxidoreductase; structu 38.0 1.5E+02 0.005 32.1 10.8 113 85-205 35-157 (417)
291 3usb_A Inosine-5'-monophosphat 37.9 1.3E+02 0.0045 33.9 10.6 66 120-190 257-324 (511)
292 1h5y_A HISF; histidine biosynt 37.6 99 0.0034 30.2 8.6 69 117-190 32-105 (253)
293 3hut_A Putative branched-chain 37.5 92 0.0031 31.9 8.7 86 88-178 140-236 (358)
294 3o07_A Pyridoxine biosynthesis 37.5 1.2E+02 0.0041 32.0 9.3 60 147-209 186-252 (291)
295 1sui_A Caffeoyl-COA O-methyltr 37.3 1.9E+02 0.0064 28.8 10.7 66 88-155 105-177 (247)
296 3q2i_A Dehydrogenase; rossmann 37.2 1.6E+02 0.0054 30.9 10.6 105 86-205 12-122 (354)
297 1i4n_A Indole-3-glycerol phosp 37.1 1.6E+02 0.0056 30.2 10.3 86 99-190 138-229 (251)
298 1p0k_A Isopentenyl-diphosphate 37.1 2.8E+02 0.0096 29.2 12.6 44 145-190 236-279 (349)
299 1o2d_A Alcohol dehydrogenase, 37.0 66 0.0023 34.6 7.7 65 88-156 41-119 (371)
300 3gnn_A Nicotinate-nucleotide p 36.9 77 0.0026 33.6 7.9 65 115-188 214-278 (298)
301 3lkb_A Probable branched-chain 36.9 1.6E+02 0.0054 30.6 10.5 86 87-177 143-239 (392)
302 3m2t_A Probable dehydrogenase; 36.8 81 0.0028 33.4 8.3 108 85-206 3-116 (359)
303 4fxs_A Inosine-5'-monophosphat 36.7 66 0.0023 36.2 7.9 65 121-190 233-299 (496)
304 3euw_A MYO-inositol dehydrogen 36.6 1.9E+02 0.0065 30.0 11.0 103 87-204 4-111 (344)
305 3o9z_A Lipopolysaccaride biosy 36.5 45 0.0015 34.8 6.1 112 87-206 3-120 (312)
306 1j8m_F SRP54, signal recogniti 36.4 1.3E+02 0.0046 31.2 9.7 54 86-141 125-188 (297)
307 3l49_A ABC sugar (ribose) tran 36.2 1.2E+02 0.0042 29.9 9.1 67 99-171 23-95 (291)
308 1wl8_A GMP synthase [glutamine 36.1 36 0.0012 32.6 4.9 77 89-170 2-80 (189)
309 1gox_A (S)-2-hydroxy-acid oxid 36.0 1.4E+02 0.0047 32.2 10.0 90 100-193 214-312 (370)
310 3i45_A Twin-arginine transloca 35.8 1.8E+02 0.006 30.3 10.6 81 87-170 142-235 (387)
311 1i1q_B Anthranilate synthase c 35.7 51 0.0017 31.7 5.9 76 88-169 1-83 (192)
312 3iwt_A 178AA long hypothetical 35.4 70 0.0024 30.5 6.8 45 97-141 39-89 (178)
313 2nli_A Lactate oxidase; flavoe 35.2 1.9E+02 0.0066 31.1 11.0 91 99-193 217-316 (368)
314 3inp_A D-ribulose-phosphate 3- 35.2 49 0.0017 34.0 6.0 102 103-205 126-242 (246)
315 3ot5_A UDP-N-acetylglucosamine 35.1 1.7E+02 0.0058 31.5 10.6 100 88-207 258-360 (403)
316 3e9m_A Oxidoreductase, GFO/IDH 35.1 78 0.0027 33.0 7.7 106 85-205 3-114 (330)
317 3s28_A Sucrose synthase 1; gly 35.0 2E+02 0.0068 34.5 12.0 109 88-208 604-730 (816)
318 2xxa_A Signal recognition part 35.0 84 0.0029 34.7 8.2 53 87-141 129-191 (433)
319 1thf_D HISF protein; thermophI 34.8 1.5E+02 0.005 29.4 9.4 67 119-190 31-102 (253)
320 1rpx_A Protein (ribulose-phosp 34.8 34 0.0012 33.9 4.6 84 103-190 110-206 (230)
321 1ws6_A Methyltransferase; stru 34.6 1E+02 0.0035 27.8 7.6 66 89-155 65-132 (171)
322 2ffh_A Protein (FFH); SRP54, s 34.6 2.7E+02 0.0092 30.7 12.2 54 86-141 125-188 (425)
323 1vrd_A Inosine-5'-monophosphat 34.6 2.8E+02 0.0096 30.7 12.6 89 99-190 265-368 (494)
324 3cea_A MYO-inositol 2-dehydrog 34.4 1.6E+02 0.0055 30.5 10.0 104 86-203 7-116 (346)
325 2pyy_A Ionotropic glutamate re 34.2 99 0.0034 28.7 7.6 51 84-141 109-159 (228)
326 2iuy_A Avigt4, glycosyltransfe 34.1 35 0.0012 35.0 4.7 54 144-207 252-307 (342)
327 3l6u_A ABC-type sugar transpor 34.0 1.1E+02 0.0039 30.2 8.4 67 100-172 27-99 (293)
328 3dr5_A Putative O-methyltransf 34.0 40 0.0014 33.3 5.0 64 88-155 82-150 (221)
329 3pfn_A NAD kinase; structural 33.9 47 0.0016 36.1 5.8 102 88-208 39-164 (365)
330 3ceu_A Thiamine phosphate pyro 33.7 59 0.002 32.0 6.1 68 116-189 94-170 (210)
331 1zh8_A Oxidoreductase; TM0312, 33.5 1.6E+02 0.0053 30.9 9.8 107 85-205 16-129 (340)
332 2es4_D Lipase chaperone; prote 33.5 8.9 0.0003 41.4 0.0 37 720-758 99-144 (332)
333 3qk7_A Transcriptional regulat 33.3 1.2E+02 0.0041 30.3 8.5 63 100-171 29-97 (294)
334 4g68_A ABC transporter; transp 33.3 9 0.00031 41.7 0.0 11 726-736 81-91 (456)
335 4gud_A Imidazole glycerol phos 33.2 45 0.0015 32.4 5.1 43 89-139 4-46 (211)
336 1pii_A N-(5'phosphoribosyl)ant 33.2 2.2E+02 0.0076 31.7 11.3 93 100-197 146-247 (452)
337 2cvh_A DNA repair and recombin 33.2 72 0.0025 30.3 6.6 39 133-171 105-155 (220)
338 2fn9_A Ribose ABC transporter, 33.0 2.8E+02 0.0095 27.2 11.2 66 99-171 20-92 (290)
339 1jvn_A Glutamine, bifunctional 33.0 1.9E+02 0.0066 32.9 11.0 77 121-202 455-543 (555)
340 3ajx_A 3-hexulose-6-phosphate 32.9 49 0.0017 32.0 5.3 79 119-201 11-95 (207)
341 1izc_A Macrophomate synthase i 32.1 3.8E+02 0.013 28.6 12.5 89 114-204 46-138 (339)
342 3ezy_A Dehydrogenase; structur 32.1 1.4E+02 0.0049 31.1 9.2 32 174-205 78-111 (344)
343 3r2g_A Inosine 5'-monophosphat 32.0 1E+02 0.0036 33.4 8.2 65 121-190 102-168 (361)
344 3c3y_A Pfomt, O-methyltransfer 32.0 1.4E+02 0.0047 29.5 8.6 66 88-155 96-168 (237)
345 3m9w_A D-xylose-binding peripl 31.7 1.3E+02 0.0043 30.3 8.4 66 99-171 20-92 (313)
346 2akz_A Gamma enolase, neural; 31.4 61 0.0021 36.0 6.3 103 94-202 217-353 (439)
347 4avf_A Inosine-5'-monophosphat 31.4 1.1E+02 0.0037 34.4 8.5 66 120-190 230-297 (490)
348 3c6k_A Spermine synthase; sper 31.3 72 0.0025 35.0 6.7 54 88-141 229-292 (381)
349 3llv_A Exopolyphosphatase-rela 31.1 1.8E+02 0.0063 25.7 8.6 92 87-190 29-122 (141)
350 3sr7_A Isopentenyl-diphosphate 31.1 2.1E+02 0.0073 30.9 10.5 86 100-190 195-306 (365)
351 2qjg_A Putative aldolase MJ040 31.1 3.2E+02 0.011 27.4 11.4 76 125-208 173-259 (273)
352 4es6_A Uroporphyrinogen-III sy 31.1 2E+02 0.0067 28.6 9.7 110 85-204 131-252 (254)
353 1fy2_A Aspartyl dipeptidase; s 30.9 62 0.0021 32.4 5.8 64 86-156 30-99 (229)
354 1vlj_A NADH-dependent butanol 30.7 1.7E+02 0.0058 31.8 9.7 65 88-156 44-122 (407)
355 3huu_A Transcription regulator 30.7 2.2E+02 0.0074 28.5 10.0 63 100-171 46-115 (305)
356 2gjl_A Hypothetical protein PA 30.6 2.7E+02 0.0092 29.0 11.0 61 119-191 84-145 (328)
357 1qap_A Quinolinic acid phospho 30.6 2.8E+02 0.0095 29.1 11.0 92 89-189 181-278 (296)
358 2f6u_A GGGPS, (S)-3-O-geranylg 30.6 94 0.0032 31.7 7.1 58 122-191 24-84 (234)
359 3oqb_A Oxidoreductase; structu 30.5 1.3E+02 0.0045 31.8 8.7 35 171-205 94-130 (383)
360 4ew6_A D-galactose-1-dehydroge 30.5 1E+02 0.0035 32.3 7.7 103 84-206 22-129 (330)
361 4gnr_A ABC transporter substra 30.5 2.3E+02 0.0079 28.8 10.3 89 89-182 146-242 (353)
362 1twd_A Copper homeostasis prot 30.3 1.3E+02 0.0045 31.2 8.2 91 94-189 97-196 (256)
363 1ujp_A Tryptophan synthase alp 30.2 1.6E+02 0.0056 30.3 9.0 38 148-190 191-228 (271)
364 3ajx_A 3-hexulose-6-phosphate 30.1 2.1E+02 0.0073 27.3 9.4 86 98-190 90-185 (207)
365 3ovp_A Ribulose-phosphate 3-ep 30.1 50 0.0017 33.3 5.0 83 119-205 18-108 (228)
366 3iwp_A Copper homeostasis prot 30.0 2.4E+02 0.0081 29.7 10.1 87 115-205 44-151 (287)
367 3r75_A Anthranilate/para-amino 29.9 68 0.0023 37.5 6.6 75 85-169 444-528 (645)
368 4hkt_A Inositol 2-dehydrogenas 29.9 2.1E+02 0.0073 29.5 10.0 103 87-205 3-110 (331)
369 2avd_A Catechol-O-methyltransf 29.9 1.2E+02 0.004 29.2 7.5 66 88-155 95-166 (229)
370 2al1_A Enolase 1, 2-phospho-D- 29.7 62 0.0021 35.9 6.0 102 94-201 219-355 (436)
371 3f4w_A Putative hexulose 6 pho 29.7 62 0.0021 31.4 5.4 83 119-204 11-98 (211)
372 3tqp_A Enolase; energy metabol 29.5 78 0.0027 35.1 6.8 101 96-200 217-346 (428)
373 3moi_A Probable dehydrogenase; 29.5 1.5E+02 0.0053 31.5 9.0 32 174-205 78-111 (387)
374 2nzl_A Hydroxyacid oxidase 1; 29.5 1.8E+02 0.0062 31.6 9.6 92 99-194 240-340 (392)
375 3gdo_A Uncharacterized oxidore 29.5 1.8E+02 0.0063 30.5 9.6 106 85-206 3-113 (358)
376 4faj_A PRGZ; substrate binding 29.2 12 0.0004 39.4 0.0 16 719-734 136-151 (564)
377 2ho3_A Oxidoreductase, GFO/IDH 29.1 2.4E+02 0.0082 29.0 10.2 103 88-205 2-109 (325)
378 1k1e_A Deoxy-D-mannose-octulos 29.1 2.5E+02 0.0084 26.1 9.5 47 148-198 41-87 (180)
379 4fo4_A Inosine 5'-monophosphat 29.0 1.5E+02 0.0053 32.0 8.9 66 120-190 109-176 (366)
380 3tb6_A Arabinose metabolism tr 28.9 2.1E+02 0.0073 28.0 9.5 67 99-171 33-108 (298)
381 2kx7_A Sensor-like histidine k 28.9 59 0.002 29.9 4.6 96 85-210 5-101 (117)
382 2px0_A Flagellar biosynthesis 28.9 1.1E+02 0.0039 31.7 7.6 55 86-141 133-190 (296)
383 2pk2_A Cyclin-T1, protein TAT; 28.6 12 0.00041 40.5 0.0 14 737-750 320-335 (358)
384 3uuw_A Putative oxidoreductase 28.6 1.2E+02 0.0042 30.9 7.8 105 85-206 4-114 (308)
385 2v25_A Major cell-binding fact 28.6 1.5E+02 0.005 28.2 7.9 55 84-141 145-201 (259)
386 3tr6_A O-methyltransferase; ce 28.6 1.5E+02 0.0051 28.3 8.0 66 88-155 90-161 (225)
387 2p9j_A Hypothetical protein AQ 28.4 2.4E+02 0.0081 25.4 9.0 40 148-191 42-81 (162)
388 3oti_A CALG3; calicheamicin, T 28.3 1.3E+02 0.0043 31.7 8.0 17 102-118 39-55 (398)
389 3mz0_A Inositol 2-dehydrogenas 28.2 2.8E+02 0.0096 28.8 10.7 104 88-205 3-113 (344)
390 3db2_A Putative NADPH-dependen 28.2 1.4E+02 0.0049 31.2 8.4 104 86-205 4-113 (354)
391 3tr9_A Dihydropteroate synthas 28.2 12 0.00042 40.0 0.0 23 162-186 105-127 (314)
392 2dul_A N(2),N(2)-dimethylguano 28.1 1.5E+02 0.005 32.1 8.5 77 88-171 72-165 (378)
393 3dm5_A SRP54, signal recogniti 27.7 1.7E+02 0.0057 32.7 9.0 54 86-141 127-190 (443)
394 2ixa_A Alpha-N-acetylgalactosa 27.7 3.1E+02 0.011 29.8 11.2 113 85-205 18-138 (444)
395 4f06_A Extracellular ligand-bi 27.5 1.5E+02 0.0051 30.8 8.4 88 88-177 140-239 (371)
396 3odm_A Pepcase, PEPC, phosphoe 27.5 13 0.00044 42.6 0.0 8 727-734 84-91 (560)
397 3tfw_A Putative O-methyltransf 27.5 2E+02 0.0068 28.4 8.9 78 88-170 89-170 (248)
398 4fzr_A SSFS6; structural genom 27.4 1.3E+02 0.0043 31.6 7.8 74 86-169 14-151 (398)
399 1lst_A Lysine, arginine, ornit 27.4 1E+02 0.0034 29.1 6.4 54 85-141 109-162 (239)
400 2nvw_A Galactose/lactose metab 27.4 1.8E+02 0.0063 32.2 9.4 106 85-204 37-160 (479)
401 3evn_A Oxidoreductase, GFO/IDH 27.2 69 0.0024 33.4 5.6 104 85-205 3-114 (329)
402 2fep_A Catabolite control prot 27.2 4E+02 0.014 26.3 11.2 65 99-171 34-104 (289)
403 3axs_A Probable N(2),N(2)-dime 27.2 1.1E+02 0.0039 33.3 7.5 78 88-172 78-160 (392)
404 3e82_A Putative oxidoreductase 27.2 1.5E+02 0.0053 31.3 8.4 103 86-205 6-114 (364)
405 3l4b_C TRKA K+ channel protien 27.1 1.4E+02 0.0047 28.9 7.4 95 86-190 22-118 (218)
406 4hjf_A Ggdef family protein; s 27.0 50 0.0017 35.1 4.5 101 103-206 217-329 (340)
407 4evq_A Putative ABC transporte 27.0 3.7E+02 0.013 27.3 11.2 77 88-169 152-239 (375)
408 3h2s_A Putative NADH-flavin re 27.0 83 0.0028 30.0 5.8 55 88-144 1-56 (224)
409 1g5t_A COB(I)alamin adenosyltr 27.0 82 0.0028 31.3 5.7 55 122-179 107-169 (196)
410 3u81_A Catechol O-methyltransf 27.0 71 0.0024 30.9 5.3 57 87-143 83-145 (221)
411 2khz_A C-MYC-responsive protei 27.0 41 0.0014 32.2 3.5 115 87-212 11-155 (165)
412 1viz_A PCRB protein homolog; s 26.8 1E+02 0.0035 31.5 6.6 60 122-193 24-86 (240)
413 3bbl_A Regulatory protein of L 26.7 2E+02 0.0067 28.5 8.8 64 99-171 26-96 (287)
414 3tsa_A SPNG, NDP-rhamnosyltran 26.6 91 0.0031 32.5 6.4 72 87-168 1-141 (391)
415 1p9l_A Dihydrodipicolinate red 26.6 4.3E+02 0.015 26.7 11.3 75 88-170 1-77 (245)
416 2rgy_A Transcriptional regulat 26.6 2.4E+02 0.0083 27.8 9.5 64 99-171 26-99 (290)
417 3k9g_A PF-32 protein; ssgcid, 26.6 1.7E+02 0.0059 28.9 8.3 13 86-98 54-66 (267)
418 3cbg_A O-methyltransferase; cy 26.6 1.8E+02 0.0061 28.4 8.3 66 88-155 98-169 (232)
419 3oa2_A WBPB; oxidoreductase, s 26.5 99 0.0034 32.3 6.7 110 87-206 3-121 (318)
420 1q6o_A Humps, 3-keto-L-gulonat 26.5 2.8E+02 0.0095 27.0 9.6 106 98-207 93-212 (216)
421 3sho_A Transcriptional regulat 26.4 2.3E+02 0.0078 26.5 8.7 94 89-192 41-139 (187)
422 3k4h_A Putative transcriptiona 26.4 1.9E+02 0.0066 28.4 8.6 64 99-171 31-101 (292)
423 4h08_A Putative hydrolase; GDS 26.4 2.4E+02 0.0082 26.3 8.9 80 89-171 22-120 (200)
424 1uoz_A Putative cellulase; hyd 26.3 14 0.0005 39.4 0.1 8 745-752 161-168 (315)
425 3brq_A HTH-type transcriptiona 26.3 3.3E+02 0.011 26.6 10.3 65 99-171 39-110 (296)
426 2esr_A Methyltransferase; stru 26.3 71 0.0024 29.4 5.0 65 88-155 55-123 (177)
427 2i1o_A Nicotinate phosphoribos 26.2 2E+02 0.007 31.4 9.3 87 100-188 197-295 (398)
428 4had_A Probable oxidoreductase 26.1 1.7E+02 0.0057 30.5 8.4 106 85-205 21-133 (350)
429 1kbi_A Cytochrome B2, L-LCR; f 26.0 1.8E+02 0.0061 32.9 9.0 92 100-194 332-436 (511)
430 2i7c_A Spermidine synthase; tr 25.8 1.1E+02 0.0038 31.3 6.8 67 87-156 102-180 (283)
431 3sg0_A Extracellular ligand-bi 25.8 1.4E+02 0.0048 30.6 7.7 86 88-178 160-256 (386)
432 3a5i_A Flagellar biosynthesis 25.8 14 0.00049 40.6 0.0 18 745-762 104-121 (389)
433 1f0k_A MURG, UDP-N-acetylgluco 25.7 84 0.0029 32.2 5.9 53 147-205 264-322 (364)
434 2h3h_A Sugar ABC transporter, 25.6 3.7E+02 0.013 26.8 10.7 66 99-171 18-91 (313)
435 1wa3_A 2-keto-3-deoxy-6-phosph 25.5 3E+02 0.01 26.2 9.6 81 117-202 18-100 (205)
436 3llv_A Exopolyphosphatase-rela 25.4 2.7E+02 0.0091 24.6 8.6 93 87-190 6-101 (141)
437 1jr3_D DNA polymerase III, del 25.2 5.7E+02 0.019 26.2 14.9 119 89-208 20-157 (343)
438 3tqv_A Nicotinate-nucleotide p 25.2 1.3E+02 0.0044 31.7 7.1 53 149-205 187-239 (287)
439 1jr2_A Uroporphyrinogen-III sy 25.1 15 0.00052 37.9 0.0 14 609-622 3-16 (286)
440 3c85_A Putative glutathione-re 25.1 2E+02 0.0068 26.8 8.0 53 133-190 105-158 (183)
441 1id1_A Putative potassium chan 25.0 3.2E+02 0.011 24.5 9.3 96 87-189 26-123 (153)
442 1oj7_A Hypothetical oxidoreduc 25.0 1.7E+02 0.0058 31.7 8.4 65 88-156 51-127 (408)
443 1mjf_A Spermidine synthase; sp 25.0 1.9E+02 0.0064 29.5 8.3 64 88-156 99-181 (281)
444 3sc6_A DTDP-4-dehydrorhamnose 24.9 1.3E+02 0.0046 29.8 7.1 52 88-141 6-64 (287)
445 3nkl_A UDP-D-quinovosamine 4-d 24.8 3.2E+02 0.011 24.1 9.0 30 87-116 4-33 (141)
446 3hcw_A Maltose operon transcri 24.6 1.4E+02 0.0049 29.7 7.3 63 100-171 31-100 (295)
447 3rce_A Oligosaccharide transfe 24.5 16 0.00054 43.4 0.0 9 566-574 694-702 (724)
448 3kux_A Putative oxidoreductase 24.5 2.5E+02 0.0087 29.3 9.5 103 86-205 6-114 (352)
449 3egc_A Putative ribose operon 24.4 1.7E+02 0.0058 28.9 7.7 65 99-172 26-97 (291)
450 3n74_A 3-ketoacyl-(acyl-carrie 24.3 2.7E+02 0.0093 27.2 9.2 83 85-170 7-91 (261)
451 2dri_A D-ribose-binding protei 24.3 2.2E+02 0.0076 27.8 8.6 64 100-170 20-90 (271)
452 2oar_A Large-conductance mecha 24.2 16 0.00055 35.8 0.0 7 729-735 117-123 (174)
453 3tdn_A FLR symmetric alpha-bet 24.1 2E+02 0.0068 28.6 8.2 67 119-190 36-107 (247)
454 1me8_A Inosine-5'-monophosphat 24.1 4E+02 0.014 29.7 11.5 101 87-190 254-380 (503)
455 2csu_A 457AA long hypothetical 24.1 7.4E+02 0.025 27.2 15.4 116 86-208 292-447 (457)
456 3hm2_A Precorrin-6Y C5,15-meth 24.1 92 0.0031 28.4 5.3 63 87-155 49-114 (178)
457 2j37_W Signal recognition part 24.0 2.1E+02 0.007 32.4 9.0 54 86-141 128-191 (504)
458 2pju_A Propionate catabolism o 24.0 5.5E+02 0.019 25.6 13.3 116 89-207 14-152 (225)
459 3vk5_A MOEO5; TIM barrel, tran 23.9 1.4E+02 0.0049 31.4 7.1 56 134-191 200-256 (286)
460 2ioy_A Periplasmic sugar-bindi 23.9 2.5E+02 0.0086 27.6 8.9 65 99-170 19-90 (283)
461 2rir_A Dipicolinate synthase, 23.8 1.1E+02 0.0039 31.4 6.4 93 85-190 5-125 (300)
462 3ajd_A Putative methyltransfer 23.8 1.9E+02 0.0064 29.2 8.0 54 88-141 109-164 (274)
463 1t0b_A THUA-like protein; treh 23.7 1.3E+02 0.0046 30.6 6.8 49 87-139 7-73 (252)
464 4ef8_A Dihydroorotate dehydrog 23.7 1E+02 0.0035 33.3 6.2 61 148-210 265-332 (354)
465 3o74_A Fructose transport syst 23.7 1.6E+02 0.0055 28.5 7.3 65 100-172 21-92 (272)
466 2bdq_A Copper homeostasis prot 23.7 1.7E+02 0.0058 29.7 7.4 93 94-190 100-206 (224)
467 4grv_A Neurotensin receptor ty 23.6 17 0.00058 40.3 0.0 11 608-618 498-508 (510)
468 3dfz_A SIRC, precorrin-2 dehyd 23.6 17 0.00058 36.9 0.0 14 609-622 3-16 (223)
469 3ctl_A D-allulose-6-phosphate 23.5 78 0.0027 32.0 5.0 90 100-190 95-194 (231)
470 2gk3_A Putative cytoplasmic pr 23.5 40 0.0014 34.5 2.8 63 101-171 43-127 (256)
471 2vsy_A XCC0866; transferase, g 23.4 2E+02 0.0068 31.7 8.8 108 87-207 406-521 (568)
472 1vma_A Cell division protein F 23.4 3.6E+02 0.012 28.1 10.3 54 86-141 131-194 (306)
473 1uir_A Polyamine aminopropyltr 23.2 1.9E+02 0.0064 30.1 8.0 67 87-156 101-183 (314)
474 3dzc_A UDP-N-acetylglucosamine 23.2 1.7E+02 0.0057 31.4 7.9 100 88-207 264-366 (396)
475 3ohs_X Trans-1,2-dihydrobenzen 23.2 2.2E+02 0.0075 29.5 8.6 33 173-205 79-113 (334)
476 3g1w_A Sugar ABC transporter; 23.1 1.6E+02 0.0054 29.3 7.3 67 100-172 23-96 (305)
477 1tqj_A Ribulose-phosphate 3-ep 23.1 72 0.0024 32.0 4.6 85 102-190 103-200 (230)
478 2qai_A V-type ATP synthase sub 23.1 3.3E+02 0.011 24.4 8.5 72 88-172 1-79 (111)
479 3ipc_A ABC transporter, substr 23.0 1.7E+02 0.0059 29.7 7.7 85 88-177 139-234 (356)
480 1ls1_A Signal recognition part 23.0 4.3E+02 0.015 27.1 10.8 54 86-141 125-188 (295)
481 3l0g_A Nicotinate-nucleotide p 23.0 1.9E+02 0.0063 30.7 7.8 53 149-205 196-248 (300)
482 2gek_A Phosphatidylinositol ma 22.9 1.6E+02 0.0056 30.3 7.5 32 86-117 19-58 (406)
483 1jcn_A Inosine monophosphate d 22.9 2.1E+02 0.007 32.1 8.8 66 120-190 256-323 (514)
484 3fro_A GLGA glycogen synthase; 22.9 1.9E+02 0.0064 30.1 8.0 32 87-118 2-42 (439)
485 2j9r_A Thymidine kinase; TK1, 22.9 45 0.0016 33.6 3.0 89 86-195 55-147 (214)
486 3b9f_I Protein C inhibitor; mi 22.9 18 0.00061 39.6 0.0 10 729-738 161-170 (395)
487 3lop_A Substrate binding perip 22.8 1.3E+02 0.0043 31.0 6.6 80 88-172 142-232 (364)
488 2fvy_A D-galactose-binding per 22.7 2.4E+02 0.0081 27.9 8.5 67 99-172 20-94 (309)
489 2pa6_A Enolase; glycolysis, ly 22.7 95 0.0032 34.0 5.8 103 93-201 220-349 (427)
490 3e3m_A Transcriptional regulat 22.7 2.6E+02 0.0088 28.8 9.0 63 99-169 88-156 (355)
491 3ffs_A Inosine-5-monophosphate 22.7 1.7E+02 0.0059 32.1 7.9 64 121-190 146-211 (400)
492 2iks_A DNA-binding transcripti 22.6 4.5E+02 0.015 25.8 10.6 75 86-168 19-106 (293)
493 1ii5_A SLR1257 protein; membra 22.6 2E+02 0.0068 26.7 7.5 52 82-140 111-162 (233)
494 3uug_A Multiple sugar-binding 22.6 1.9E+02 0.0064 29.1 7.8 66 97-168 19-90 (330)
495 1iy9_A Spermidine synthase; ro 22.6 1.4E+02 0.0048 30.4 6.8 65 89-156 101-177 (275)
496 3w01_A Heptaprenylglyceryl pho 22.5 1.4E+02 0.0047 30.6 6.5 61 121-190 26-86 (235)
497 2c0d_A Thioredoxin peroxidase 22.5 18 0.00062 36.0 0.0 14 609-622 3-16 (221)
498 3c3k_A Alanine racemase; struc 22.4 4.1E+02 0.014 26.1 10.2 74 86-168 7-92 (285)
499 2vpt_A Lipolytic enzyme; ester 22.4 1.2E+02 0.0042 28.8 6.0 85 83-169 1-127 (215)
500 1qv9_A F420-dependent methylen 22.4 1.1E+02 0.0038 31.6 5.7 70 120-195 49-123 (283)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=2.5e-25 Score=211.64 Aligned_cols=121 Identities=30% Similarity=0.591 Sum_probs=114.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+|||||||++.+|..++.+|+.+||. |.+|.+|.+|++++++ ..|||||+|+ ||+|||++++++||+....+++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 5689999999999999999999999996 6689999999999987 6899999999 9999999999999987777899
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||++|++.+.+...+++++||++||.|||++++|..+|+++++|
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998875
No 2
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.92 E-value=8.9e-25 Score=218.96 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=109.6
Q ss_pred HHHhCCcEEeccccCCcceeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHHHHHHHHHHhCCC-
Q 004001 34 QHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGY- 112 (780)
Q Consensus 34 V~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r~~L~~lL~~~Gy- 112 (780)
+.+|||.|.|+|++|+||+|.+.+|+............ .....+..++||||||++.++..|..+|+..||
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~--------~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~ 87 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKP--------SDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS 87 (206)
T ss_dssp -----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccccCC--------CcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 67999999999999999999999887543322111100 011234677999999999999999999999999
Q ss_pred EEEEECCHHHHHHHHHhc-----------CCCceEEEEcc-CCCCCHHHHHHHHHhhcC--CCCccEEEEecCC-CHHHH
Q 004001 113 EVTEATNGLQAWKILEDL-----------TNHIDLVLTEV-MPCLSGVALLSKIMSHKT--RKNLPVIMMSSLD-SMGLV 177 (780)
Q Consensus 113 eV~~A~dg~eALe~L~~~-----------~~~pDLVLlDi-MP~mdGleLl~~IRs~~~--~~~iPIIvLSa~~-~~e~~ 177 (780)
.|..+.++.+|++++... ...|||||+|+ ||+++|++++++||+... .+.+|||++|++. +.+.+
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~ 167 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEA 167 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHH
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHH
Confidence 899999999999999862 13799999999 999999999999987532 3789999999998 77888
Q ss_pred HHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 178 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 178 ~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
.+++++|+++||.||++ +|..+|+.++++..
T Consensus 168 ~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 168 RETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 89999999999999999 99999999887654
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=4.3e-21 Score=174.76 Aligned_cols=118 Identities=31% Similarity=0.452 Sum_probs=111.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+....+.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 489999999999999999999999999999999999999976 6799999999 9999999999999876656789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
++|+..+.+...++++.||++||.||+++++|..+|+++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998864
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.86 E-value=6.2e-21 Score=176.93 Aligned_cols=123 Identities=27% Similarity=0.511 Sum_probs=114.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+..+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCcc
Confidence 45789999999999999999999999999999999999999987 6899999999 99999999999998765567899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.....+++++||++||.||++.++|..+|++++++..
T Consensus 81 ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 81 ILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999988653
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=9.6e-23 Score=191.39 Aligned_cols=114 Identities=23% Similarity=0.367 Sum_probs=102.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
.+.+|||||||++.++..+..+|+.+||+|+ +|.++.+|++++++ ..|||||+|+ ||+|+|++++++||+ .+
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~----~~ 79 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSYPVADILAE----RN 79 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHH----TC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHc----CC
Confidence 3678999999999999999999999999986 78999999999987 7899999999 999999999999986 36
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+|||++|++.+... +.++|+++||.|||++++|..+|.++++
T Consensus 80 ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 80 VPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 89999999887543 3468999999999999999999887654
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.84 E-value=3.4e-20 Score=169.81 Aligned_cols=121 Identities=30% Similarity=0.565 Sum_probs=110.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
..++||||||++..+..++.+|+..||. |..+.++.+|++.+.. ...|||||+|+ ||+++|++++++||+....+.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA-NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 4578999999999999999999999995 8899999999998875 24699999999 9999999999999876556789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|||++|+..+.....+++++||++||.||+++++|..+|+.+++
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999875
No 7
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=5.8e-20 Score=166.51 Aligned_cols=116 Identities=29% Similarity=0.455 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+. ..+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ii 77 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKDGVEVCREVRKK---YDMPII 77 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTTTHHHHHHHHHHTT---CCSCEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 489999999999999999999999999999999999999986 6899999999 9999999999999853 468999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+..+.....++++.||++||.||++.++|..+|++++++
T Consensus 78 ~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 78 MLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998764
No 8
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.83 E-value=1.2e-19 Score=168.56 Aligned_cols=128 Identities=17% Similarity=0.316 Sum_probs=117.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
+..++||||||++..+..|..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp --CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGCHHHHHHHHHSSSTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhccccc
Confidence 45679999999999999999999999987 8899999999999986 7899999999 99999999999998755568
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHHhccCCC
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCHSSSG 214 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr~~~~s~ 214 (780)
.+|||++|+..+.+...+++++|+++||.||+ +.++|..+|+.+++++.+...
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~~ 134 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVNH 134 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999 999999999999998876553
No 9
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.82 E-value=1.8e-19 Score=170.47 Aligned_cols=124 Identities=26% Similarity=0.437 Sum_probs=115.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+.++||||||++..+..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+....+.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 45799999999999999999999999999999999999999986 6899999999 99999999999998765568899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
||++|+..+.+...+++++|+++||.||++.++|..+|++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987644
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.7e-19 Score=168.83 Aligned_cols=122 Identities=22% Similarity=0.408 Sum_probs=107.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhh--cCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH--KTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~--~~~~ 161 (780)
.+.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. ...+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 456899999999999999999999999999999999999999987 6899999999 9999999999999853 2346
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
.+|||++|+..+.+...+++++||++||.||+..++|..+|..++..
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999987643
No 11
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1.9e-19 Score=184.46 Aligned_cols=121 Identities=26% Similarity=0.437 Sum_probs=113.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++.++..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ 97 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPGMDGFGVLRRLRAD--GIDAP 97 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHT--TCCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCC
Confidence 45799999999999999999999999999999999999999987 6799999999 9999999999999864 46899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.+...+++++||++||.||++.++|..+|+.++++..
T Consensus 98 ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998764
No 12
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.82 E-value=2e-19 Score=166.15 Aligned_cols=121 Identities=23% Similarity=0.463 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~---~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
++||||||++.++..+..+|+..||. |..+.++.+|++.+... ...|||||+|+ ||+++|++++++||+.. .+.
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~-~~~ 81 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL-GYT 81 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS-CCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc-CCC
Confidence 58999999999999999999999984 77999999999988641 14699999999 99999999999998642 356
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|||++|+..+.....+++++||++||.||++.++|..+|++++..+
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999887544
No 13
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=3.5e-19 Score=163.73 Aligned_cols=120 Identities=23% Similarity=0.362 Sum_probs=111.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~i 78 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN--EFFNLALFXIKLPDMEGTELLEKAHKL--RPGMKK 78 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSBCSSSBHHHHHHHHHHH--CTTSEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhh--CCCCcE
Confidence 4689999999999999999999999999999999999999987 6799999999 9999999999999864 368999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|++|+..+.....+++++||++||.||++.++|..+|++++++..
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999887643
No 14
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=5.4e-20 Score=179.99 Aligned_cols=122 Identities=16% Similarity=0.317 Sum_probs=112.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+++||||||++.++..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~--~~~~ 80 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSGLSLIAPLCDL--QPDA 80 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEESHHHHHHHHHH--CTTC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccHHHHHHHHHhc--CCCC
Confidence 456799999999999999999999999999999999999999976 6799999999 9999999999999875 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|||++|+..+.+...+++++||++||.||++.++|..+|+.++++..
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 81 RILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998876543
No 15
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.82 E-value=4.5e-19 Score=166.54 Aligned_cols=127 Identities=20% Similarity=0.395 Sum_probs=115.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-------cCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILED-------LTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~-------~~~~pDLVLlDi-MP~mdGleLl~~IRs 156 (780)
.++||||||++..+..+..+|+..|+ .|..+.++.+|++.++. ....|||||+|+ ||+++|++++++||+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 57999999999999999999999998 89999999999999961 126799999999 999999999999987
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
....+.+|||++|+..+.+...++++.|+++||.||++.++|..+|+++.+.+....
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 140 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSVMQ 140 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTTSC
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHcC
Confidence 656788999999999999999999999999999999999999999999988776544
No 16
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.81 E-value=6.8e-19 Score=157.84 Aligned_cols=118 Identities=25% Similarity=0.444 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. .+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~--~~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSN--DVSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHT--TCCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 479999999999999999999999999999999999999987 6799999999 9999999999999754 4679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|+..+.....++++.|+++||.||++.++|..+|++++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.81 E-value=4.7e-19 Score=160.96 Aligned_cols=119 Identities=22% Similarity=0.404 Sum_probs=110.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+||||||++..+..+..+|...||.|..+.++.++++.+.. ..||+||+|+ ||+++|++++++|++. .+.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ 77 (126)
T 1dbw_A 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDL--KINIP 77 (126)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHT--TCCCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHhc--CCCCC
Confidence 34689999999999999999999999999999999999999976 6799999999 9999999999999764 47899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||++|+..+.....++++.|+++||.||++.++|..+|++++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 78 SIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998764
No 18
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=1.3e-19 Score=167.20 Aligned_cols=126 Identities=16% Similarity=0.273 Sum_probs=114.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR--RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 35699999999999999999999999999999999999999987 6799999999 99999999999998754568899
Q ss_pred EEEEecCCCHHHHH-HHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 165 VIMMSSLDSMGLVF-KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 165 IIvLSa~~~~e~~~-~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
||++|+..+..... .+++.|+++||.||++.++|..+|++++++.....
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~~ 132 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEGK 132 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC---
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999988777766 88999999999999999999999999999876544
No 19
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.81 E-value=1e-19 Score=165.27 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=109.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ 79 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST--RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSK 79 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCE
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCC
Confidence 45799999999999999999999999999999999999999987 6799999999 99999999999998765568899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|+..+... ..++..|+++||.||++.++|..+|++.++..
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 80 FVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 999999988877 88999999999999999999999999987654
No 20
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=5.3e-19 Score=160.44 Aligned_cols=122 Identities=26% Similarity=0.501 Sum_probs=111.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+.++||||||++..+..+..+|+..|| .|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+....+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 456899999999999999999999999 78899999999999976 6799999999 9999999999999875456789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.....++++.|+++||.||++.++|..+|++++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998764
No 21
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.81 E-value=2.6e-19 Score=170.01 Aligned_cols=121 Identities=31% Similarity=0.467 Sum_probs=111.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
...++||||||++..+..|..+|+..||+|+ .+.++.+|++.+......|||||+|+ ||+++|++++++||+. .+.
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~--~~~ 111 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEF--DKN 111 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHH--CTT
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhh--CCC
Confidence 3567999999999999999999999999998 99999999999987211789999999 9999999999999865 478
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+|||++|+..+.+...+++++|+++||.||++.++|..+|+++++
T Consensus 112 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 112 ARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988764
No 22
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.81 E-value=3.6e-19 Score=164.85 Aligned_cols=121 Identities=22% Similarity=0.356 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA--TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 4689999999999999999999999999999999999999987 6799999999 999999999999987654578999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+.........++.+|+++||.||++.++|..+|+.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999877666666677788999999999999999999988654
No 23
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=9.4e-19 Score=162.08 Aligned_cols=124 Identities=24% Similarity=0.426 Sum_probs=113.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+......|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ 79 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--TPHMA 79 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH--CTTCE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCe
Confidence 45799999999999999999999999999999999999999984226899999999 9999999999999865 47899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
||++|+..+.+...+++++|+++||.||++.++|..+|+.++++...
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 80 VIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886543
No 24
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.80 E-value=1.1e-18 Score=157.30 Aligned_cols=118 Identities=26% Similarity=0.460 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~i 77 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhC---CCCcE
Confidence 4589999999999999999999999999999999999999987 6799999999 9999999999999865 57899
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+.....+++++|+++||.||++.++|..+|+.++++.
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999989999999999999999999999999999988764
No 25
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.80 E-value=4.9e-19 Score=184.07 Aligned_cols=128 Identities=30% Similarity=0.446 Sum_probs=115.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++.++..+...|+..||.|..+.++.+|++.+.. ...|||||+|+ ||+++|++++++||+......+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~-~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ-HPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-CTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-CCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 46799999999999999999999999999999999999999986 22489999999 99999999999999876556799
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCCC
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSG 214 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s~ 214 (780)
||++|+..+.....+++++||++||.||+++++|..+|++++++......
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~~ 251 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQFNS 251 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC---
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhhhcc
Confidence 99999999999999999999999999999999999999999988765543
No 26
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.80 E-value=1.3e-18 Score=156.54 Aligned_cols=117 Identities=21% Similarity=0.381 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.||+ .+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~ii 77 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDENGLMLTRALRE---RSTVGII 77 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHT---TCCCEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCCCChHHHHHHHHh---cCCCCEE
Confidence 489999999999999999999999999999999999999987 6799999999 999999999999976 3679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|+..+.....+++++|+++||.||++.++|..+|++++++.
T Consensus 78 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 78 LVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998874
No 27
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.80 E-value=4.4e-19 Score=160.40 Aligned_cols=117 Identities=25% Similarity=0.507 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~i 78 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVI--DENIRV 78 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHH--CTTCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHHh--CCCCCE
Confidence 3589999999999999999999999999999999999999987 5799999999 9999999999999865 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|++|+..+.....++++.|+++||.||++.++|..+|+++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 79 IIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 28
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=5.8e-19 Score=161.22 Aligned_cols=123 Identities=25% Similarity=0.322 Sum_probs=107.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..+..+|+ .||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4689999999999999999998 89999999999999999987 6799999999 999999999999987655678999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
|++|+..+... ..++..|+++||.||++.++|..+|++++++.....
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~~ 127 (133)
T 3nhm_A 81 IFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAEG 127 (133)
T ss_dssp EEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC---
T ss_pred EEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcccC
Confidence 99999988777 899999999999999999999999999998875443
No 29
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.80 E-value=3.1e-19 Score=162.20 Aligned_cols=120 Identities=28% Similarity=0.490 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++||||||++..+..+..+|+..|| .|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 46899999999999999999999999 78899999999999986 6799999999 99999999999998754457899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
||++|+..+.....++++.|+++||.||++.++|..+|++++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998765
No 30
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.80 E-value=3.9e-19 Score=160.10 Aligned_cols=119 Identities=24% Similarity=0.429 Sum_probs=104.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 379999999999999999999999999999999999999987 5799999999 9999999999999875545789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+..+......+++.|+++||.||++.++|..+|++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999998888888999999999999999999999999988753
No 31
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.80 E-value=1.7e-18 Score=162.57 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=112.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEcc-CCCCCHHHHHHHHHhh
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~-----~~~pDLVLlDi-MP~mdGleLl~~IRs~ 157 (780)
..++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ...|||||+|+ ||+++|++++++||+.
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 356899999999999999999999887 788999999999999741 13699999999 9999999999999875
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
...+.+|||++|+..+...+.++++.||++||.||++.++|..+|+++++.+.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 44578999999999999999999999999999999999999999999988764
No 32
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.80 E-value=6.7e-19 Score=162.04 Aligned_cols=121 Identities=21% Similarity=0.389 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.++||||||++..+..+..+|+..| +.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~~~g~~~~~~l~~~--~~~~ 78 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPGMTGLEVLAEIRKK--HLNI 78 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHT--TCSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHHH--CCCC
Confidence 4689999999999999999999886 566789999999999987 5799999999 9999999999999863 5789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
|||++|+..+.....++++.|+++||.||++.++|..+|++++++...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999998876443
No 33
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.80 E-value=1.1e-18 Score=164.29 Aligned_cols=121 Identities=24% Similarity=0.409 Sum_probs=113.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ 88 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS--REVDLVISAAHLPQMDGPTLLARIHQQ--YPSTT 88 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc--CCCCEEEEeCCCCcCcHHHHHHHHHhH--CCCCe
Confidence 45799999999999999999999999999999999999999987 6899999999 9999999999999864 47899
Q ss_pred EEEEecCCCHHHHHHHHHCC-CCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aG-AddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.+...+++..| +++||.||++.++|..+|.+++++..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 99999999999999999999 99999999999999999999987654
No 34
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.80 E-value=2.6e-19 Score=165.40 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~--mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+ ++|++++++||+. .+.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~--~~~ 80 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKR--GFH 80 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHT--TCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhC--CCC
Confidence 34689999999999999999999999999999999999999876 6799999999 999 9999999999865 478
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
+|||++|+..+.+...+++++|+++||.||++.++|..+|++++.......
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 131 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEGH 131 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999998765443
No 35
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.80 E-value=1.2e-18 Score=161.41 Aligned_cols=121 Identities=23% Similarity=0.363 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..+..+|...||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. .+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~---~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSDGDGWTLCKKIRNVT---TCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CCCSEEEEESEETTEEHHHHHHHHHTTC---CCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHccCC---CCCE
Confidence 4689999999999999999999999999999999999999987 6799999999 99999999999998642 7899
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
|++|+..+.....++++.|+++||.||++.++|..+|++++++....
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~~ 125 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNSY 125 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998875443
No 36
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.5e-18 Score=159.74 Aligned_cols=125 Identities=21% Similarity=0.316 Sum_probs=113.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRN-CGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~-~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..+..+|+. .||+ |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 457999999999999999999999 8999 8899999999999987 6799999999 999999999999987545688
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
+|||++|+..+.....++++.|+++||.||++.++|..+|++++++....
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999876543
No 37
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=7.1e-19 Score=160.33 Aligned_cols=121 Identities=26% Similarity=0.452 Sum_probs=104.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~ 80 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNGLKLLEHIRNR--GDQT 80 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC-----CHHHHHHHHHT--TCCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhc--CCCC
Confidence 456799999999999999999999999999999999999999976 6799999999 9999999999999864 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.....++++.|+++||.||+ +.++|..+|++++++.
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999 8999999999988653
No 38
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.79 E-value=8.1e-19 Score=163.28 Aligned_cols=126 Identities=21% Similarity=0.366 Sum_probs=114.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.+.++||||||++..+..+..+|...||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK--THPHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 356799999999999999999999999999999999999999987 5799999999 9999999999999875456889
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
|||++|+..+.....++++.|+++||.||++.++|..+|++++++....
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 132 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYED 132 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999876543
No 39
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.79 E-value=1.5e-18 Score=159.37 Aligned_cols=123 Identities=24% Similarity=0.363 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+.+||||||++..+..+..+|+..||+|..+.++.+|+..+.. ...|||||+|+ ||+++|++++++||+.. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY-QKRIGLMITDLRMQPESGLDLIRTIRASE-RAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH-CTTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh-CCCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCC
Confidence 35689999999999999999999999999999999999999987 23499999999 99999999999998653 57899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.+...++++.|+++||.||++.++|..+|++++....
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999876543
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.79 E-value=1.1e-18 Score=163.81 Aligned_cols=121 Identities=23% Similarity=0.366 Sum_probs=111.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
..+++||||||++..+..|..+|+..+ +.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+. .+
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~--~~ 93 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRSE--KL 93 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHHHT--TC
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHHHh--CC
Confidence 357899999999999999999999887 788899999999999986 6799999999 9999999999999864 57
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+|||++|+..+.+...++++.|+++||.||++.++|..+|++++++.
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 899999999999999999999999999999999999999999998754
No 41
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.79 E-value=1.7e-18 Score=154.75 Aligned_cols=116 Identities=27% Similarity=0.465 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|...||+|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPIL 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHhC---CCCCEE
Confidence 489999999999999999999999999999999999999987 5799999999 9999999999999863 579999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
++|+..+......+++.|+++||.||++.++|..+|+.++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999988899999999999999999999999999998765
No 42
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.79 E-value=1.2e-18 Score=156.28 Aligned_cols=115 Identities=28% Similarity=0.502 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
++||||||++..+..+..+|+..||+ +..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. .+.+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~--~~~~~i 78 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKI--DPNAKI 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHH--CTTCCE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhh--CCCCeE
Confidence 58999999999999999999999999 4589999999999987 5799999999 9999999999999865 378999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
|++|+..+.....++++.|+++||.||++.++|..+|++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 79 IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
No 43
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.79 E-value=3.4e-19 Score=164.81 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=112.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~~i 163 (780)
+++||||||++..+..|..+|+. .||+|..+.++.+|++.+... ..|||||+|+ || +++|++++++||+....+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 56999999999999999999999 999999999999999998641 5799999999 99 99999999999875456889
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
|||++|+..+.+...+++++|+++||.||++.++|..+|+.++++....
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998765443
No 44
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2.7e-18 Score=156.77 Aligned_cols=126 Identities=22% Similarity=0.326 Sum_probs=114.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEcc-CCCCCHHHHHHHHHhhc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSHK 158 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~-----~~~pDLVLlDi-MP~mdGleLl~~IRs~~ 158 (780)
+++||||||++..+..+..+|+..|| .|..+.++.+|++.+... ...|||||+|+ ||+++|++++++||+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 999999999999999741 14799999999 99999999999998754
Q ss_pred CCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 159 TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
..+.+|||++|+..+.+...++++.|+++||.||++.++|..+|+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 135 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLST 135 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHccc
Confidence 447899999999999999999999999999999999999999999999887544
No 45
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.79 E-value=5e-19 Score=164.30 Aligned_cols=124 Identities=23% Similarity=0.325 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~ 162 (780)
+..++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ...|||||+|+ ||+ ++|++++++||+. +.
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~ 78 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG-GWYPDLILMDIELGEGMDGVQTALAIQQI---SE 78 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-TCCCSEEEEESSCSSSCCHHHHHHHHHHH---CC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc-CCCCCEEEEeccCCCCCCHHHHHHHHHhC---CC
Confidence 356799999999999999999999999999999999999999974 25799999999 985 9999999999864 67
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
+|||++|+..+.+...+++++|+++||.||++.++|..+|+.++++++..
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 79 LPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp CCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999998888889999999999999999999999999999876543
No 46
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.6e-19 Score=191.39 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~~i 163 (780)
..+||||||++.++..+..+|+..||.|. .|.+|.+||+.+.. ..|||||+|+ || +|||+++++.||+.. .+
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~ 234 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADGSSGIDAVKDILGRM---DV 234 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTSCCTTTTTHHHHHHT---TC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCCCCHHHHHHHHHhcC---CC
Confidence 45899999999999999999999999999 99999999999987 7899999999 99 899999999998764 89
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
|||++|++. +...+++++|+++||.|||++++|..+|..++++...
T Consensus 235 piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 235 PVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp CEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 999999985 3466799999999999999999999999999987543
No 47
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.79 E-value=4e-19 Score=164.10 Aligned_cols=127 Identities=20% Similarity=0.400 Sum_probs=115.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++....+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK--GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 56799999999999999999999999999999999999999987 6799999999 99999999999998754568899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCCC
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSG 214 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s~ 214 (780)
||++|+..+.....+++++|+++||.||++.++|..+|++++++.+....
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 133 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQTG 133 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhccc
Confidence 99999998888888999999999999999999999999999988765543
No 48
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.79 E-value=9.3e-19 Score=160.95 Aligned_cols=123 Identities=26% Similarity=0.390 Sum_probs=114.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~~ 81 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRMPKLGGLEMLDRIKAG--GAKPY 81 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHT--TCCCE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCc
Confidence 35789999999999999999999999999999999999999987 6799999999 9999999999999865 47899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
||++|+..+.+...+++++|+++||.||++.++|..+|+++++.....
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999876543
No 49
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.79 E-value=2.8e-19 Score=161.70 Aligned_cols=120 Identities=26% Similarity=0.405 Sum_probs=111.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+....+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 589999999999999999999999999999999999998875 6799999999 9999999999999875445789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|+..+.+...++++.|+++||.||++.++|..+|+.++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999998888899999999999999999999999999998764
No 50
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2.8e-18 Score=158.67 Aligned_cols=128 Identities=21% Similarity=0.317 Sum_probs=115.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC--------CCceEEEEcc-CCCCCHHHHHHH
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLT--------NHIDLVLTEV-MPCLSGVALLSK 153 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~--------~~pDLVLlDi-MP~mdGleLl~~ 153 (780)
...++||||||++..+..+..+|+..|| .|..+.++.+|++.+.... ..|||||+|+ ||+++|++++++
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 3567899999999999999999999998 8999999999999997411 4699999999 999999999999
Q ss_pred HHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
||+....+.+|||++|+..+.....++++.|+++||.||++.++|..+|+++++++...
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 142 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLDI 142 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhhh
Confidence 98654347899999999999999999999999999999999999999999999887543
No 51
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=2e-18 Score=160.21 Aligned_cols=119 Identities=27% Similarity=0.417 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+|||
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~g~~l~~~l~~~--~~~~~ii 80 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPDMSGEDVLDWINQN--DIPTSVI 80 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSSSBHHHHHHHHHHT--TCCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhc--CCCCCEE
Confidence 389999999999999999999999999999999999999987 5799999999 9999999999999764 4789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
++|+..+.+...++++.|+++||.||++.++|..+|+.++++..
T Consensus 81 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 81 IATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887643
No 52
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.78 E-value=7.8e-19 Score=160.55 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
++||||||++..+..+..+|+..||.+. .+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~~~g~~~~~~l~~~--~~~~~i 77 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGII 77 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHT--TCCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCCCChHHHHHHHHhc--CCCCeE
Confidence 6899999999999999999999999998 89999999999987 6799999999 9999999999999864 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
|++|+..+.+...++++.|+++||.||++.++|..+|+.++++....
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp EEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 99999999888999999999999999999999999999998765443
No 53
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=6e-19 Score=163.13 Aligned_cols=122 Identities=26% Similarity=0.379 Sum_probs=102.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+++||||||++..+..+..+|+.. |.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 78 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH--HCCSEEEEETTC------CHHHHHHTSTTCTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCC
Confidence 3568999999999999999999988 999999999999999987 6799999999 99999999999998765458899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.+...+++++|+++||.||++.++|..+|+.++++..
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp EEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 9999999988888899999999999999999999999999988654
No 54
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2.7e-18 Score=158.57 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHHhhc-
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIMSHK- 158 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~---~~~pDLVLlDi-MP~mdGleLl~~IRs~~- 158 (780)
+.++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ...|||||+|+ ||+++|++++++||+..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 457999999999999999999999999 889999999999999752 14699999999 99999999999998743
Q ss_pred -CCCCccEEEEecCCCHHHHHHHHHCC-CCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 159 -TRKNLPVIMMSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 159 -~~~~iPIIvLSa~~~~e~~~~al~aG-AddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
..+.+|||++|+..+.....+++..| +++||.||++.++|..+|++++...
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999 9999999999999999999987543
No 55
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.78 E-value=3.6e-18 Score=152.76 Aligned_cols=117 Identities=25% Similarity=0.371 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++..+..+..+|+..||.|..+.++.+++..+.. ..||+||+|+ ||+++|++++++|+. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~---~~~~~ii 76 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQ---WSAVPVI 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHT---TCCCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHh---CCCCcEE
Confidence 589999999999999999999999999999999999998876 5799999999 999999999999973 4679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 56
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=2.6e-19 Score=164.87 Aligned_cols=119 Identities=19% Similarity=0.134 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~G-yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
..++||||||++..+..+..+|+..| |+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 45689999999999999999999999 999999999999999876 7899999999 99999999999998754 589
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|||++|+..+.+...+++++|+++||.||++.++|..+|+++++.
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999987654
No 57
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.78 E-value=2.9e-18 Score=157.19 Aligned_cols=119 Identities=26% Similarity=0.456 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+..+|...||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~--~~~~~i 78 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQ--KLMFPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHcC--CCCCCE
Confidence 3589999999999999999999999999999999999999987 5799999999 9999999999999865 367999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+......+++.|+++||.||++.++|..+|+.++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 79 LMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999988888889999999999999999999999999998764
No 58
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=3.3e-18 Score=176.97 Aligned_cols=122 Identities=29% Similarity=0.467 Sum_probs=114.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
...++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +.+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~ 202 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTL 202 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH--SCCSEEEEEESSCSSCCHHHHHHHHHHH--CCS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCC
Confidence 356899999999999999999999999999999999999999987 6799999999 99999999999998754 579
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|||++|+....+...+++++|+++||.||++.++|..+|.+++++.+
T Consensus 203 piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 203 PVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999987654
No 59
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.78 E-value=4.2e-18 Score=156.52 Aligned_cols=123 Identities=21% Similarity=0.324 Sum_probs=113.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..|..+|+..||+|. .+.++.+|++.+.. ..|||||+|+ || +++|+++++.|++. +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~~~g~~~~~~l~~~---~~ 82 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGALDGVETAARLAAG---CN 82 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSSSCHHHHHHHHHHH---SC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCCHHHHHHHHHhC---CC
Confidence 467999999999999999999999999999 59999999999987 5799999999 98 79999999999865 67
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
+|||++|+..+.....++++.|+++||.||++.++|..+|++++++.....
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 133 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLEE 133 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccCC
Confidence 999999999999999999999999999999999999999999998765544
No 60
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.78 E-value=1.9e-18 Score=157.85 Aligned_cols=119 Identities=24% Similarity=0.448 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++..+..+..+|... ||.++ .+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. ..+.+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~~~ 79 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAG-FEHQPN 79 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHH-CSSCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhc-CCCCCc
Confidence 58999999999999999999987 88876 89999999999987 5799999999 9999999999999863 246789
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|+..+.+...++++.|+++||.||++.++|..+|++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999988754
No 61
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.78 E-value=5.4e-18 Score=154.56 Aligned_cols=121 Identities=21% Similarity=0.385 Sum_probs=105.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 35689999999999999999999999999999999999999987 7899999999 99999999999998764335566
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||+++..... ...++++.|+++||.||++.++|..+|++.+...
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 7777766655 7889999999999999999999999999987543
No 62
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.77 E-value=1.1e-18 Score=162.40 Aligned_cols=123 Identities=17% Similarity=0.269 Sum_probs=111.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~G-yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
...+||||||++..+..|..+|+..| |+|..+.++.+++..+......|||||+|+ ||+++|++++++||+. .+.+
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~ 96 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRL--HPGL 96 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHH--CTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHh--CCCC
Confidence 56799999999999999999999999 999999999998887754104699999999 9999999999999865 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999988653
No 63
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=4e-18 Score=156.66 Aligned_cols=121 Identities=20% Similarity=0.363 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHhhcC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKT 159 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP-----~mdGleLl~~IRs~~~ 159 (780)
.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ || +++|+++++.|++.
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~-- 77 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ-- 77 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH--SCEEEEEEETTTTC-----CCHHHHHHHHHHH--
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh--
Confidence 45799999999999999999999999999999999999999987 6799999999 99 99999999999865
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
.+.+|||++|+..+.+...++++.|+++||.||++.++|..+|++++++..
T Consensus 78 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 578999999999998899999999999999999999999999999987543
No 64
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.77 E-value=4e-18 Score=156.80 Aligned_cols=121 Identities=22% Similarity=0.412 Sum_probs=106.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC---
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR--- 160 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~--- 160 (780)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. .. |+||+|+ ||+++|++++++|++....
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCS
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccC
Confidence 356799999999999999999999999999999999999998864 34 9999999 9999999999999843211
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
...+||++|+..+.....++++.|+++||.||++.++|..+|++++++
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 223588899999999899999999999999999999999999988754
No 65
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.77 E-value=9.3e-18 Score=157.88 Aligned_cols=122 Identities=17% Similarity=0.392 Sum_probs=113.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
++.++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~~ 80 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG--TSVQLVISDMRMPEMGGEVFLEQVAKS--YPDI 80 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT--SCCSEEEEESSCSSSCHHHHHHHHHHH--CTTS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHh--CCCC
Confidence 467899999999999999999999999999999999999999986 6799999999 9999999999999864 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCC-CCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aG-AddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|||++|+..+.....+++..| +++||.||++.++|..+|..++++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999988999999998 99999999999999999999987653
No 66
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.76 E-value=3.9e-18 Score=153.20 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=108.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IRs~~~~~~i 163 (780)
+.++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ || +++|++++++||+....+.+
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~ 81 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence 34689999999999999999999999999999999999999987 5799999999 99 99999999999876546789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|||++ +..+.....++++.|+++||.||++.++|..+|+++++
T Consensus 82 ~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 82 PIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp CEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 99999 88888888899999999999999999999999998875
No 67
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.76 E-value=1.1e-17 Score=157.20 Aligned_cols=121 Identities=19% Similarity=0.354 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+++||||||++..+..+..+|+. ||+|..+.++.+|++.+.. ...|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ 78 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK-SDPFSVIMVDMRMPGMEGTEVIQKARLI--SPNSV 78 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH-SCCCSEEEEESCCSSSCHHHHHHHHHHH--CSSCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCcHHHHHHHHHhc--CCCcE
Confidence 356999999999999999999975 9999999999999999987 12369999999 9999999999999865 47899
Q ss_pred EEEEecCCCHHHHHHHHHCC-CCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aG-AddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.+...+++..| +++||.||++.++|..+|..++++..
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 79 YLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999987654
No 68
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.76 E-value=1.3e-17 Score=156.46 Aligned_cols=122 Identities=22% Similarity=0.337 Sum_probs=110.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
...+||||||++..+..|..+|+..|+. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+. .+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~--~~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSY--ELP 89 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHT--TCS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCC
Confidence 5679999999999999999999999854 4589999999999987 6799999999 9999999999999865 478
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
+|||++|+..+.....+++++|+++||.||++.++|..+|..++++...
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 9999999999999999999999999999999999999999999886543
No 69
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.75 E-value=4.9e-18 Score=174.99 Aligned_cols=120 Identities=24% Similarity=0.470 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+..++||||||++.++..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+ .+.+
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlvllD~~lp~~~G~~l~~~lr~---~~~~ 109 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE--DHPDLILLDLGLPDFDGGDVVQRLRK---NSAL 109 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEEECCSCHHHHHHHHHHHHT---TCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHc---CCCC
Confidence 456799999999999999999999999999999999999999987 6799999999 999999999999985 3679
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.+.+.+++++||++||.||+++++|..+|+.++++.
T Consensus 110 ~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 110 PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999988653
No 70
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.75 E-value=4.6e-18 Score=168.12 Aligned_cols=119 Identities=20% Similarity=0.402 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++.++..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~--~~~~~i 79 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAI--SDGIPI 79 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHT--TCCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 4589999999999999999999999999999999999999876 6799999999 9999999999999864 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++.
T Consensus 80 i~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 80 VFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999998888899999999999999999999999999998764
No 71
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.75 E-value=5.2e-18 Score=151.23 Aligned_cols=113 Identities=27% Similarity=0.454 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii 77 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPGISGLEVAGEIRKKK--KDAKII 77 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHccC--CCCeEE
Confidence 489999999999999999999999999999999999999987 6799999999 99999999999998653 679999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
++|+..+.. ..++..|+++||.||++.++|..+|++++
T Consensus 78 ~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 999986654 67889999999999999999999998764
No 72
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.75 E-value=1.1e-17 Score=167.17 Aligned_cols=120 Identities=24% Similarity=0.411 Sum_probs=112.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~lr~~--~~~~~i 77 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKSMRES--GVNTPV 77 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHT--TCCCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCCE
Confidence 4689999999999999999999999999999999999999987 6799999999 9999999999999864 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|++|+..+.+...+++++||++||.||+++++|..+|+.++++..
T Consensus 78 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 78 LMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999998899999999999999999999999999999998753
No 73
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.75 E-value=1e-17 Score=157.40 Aligned_cols=121 Identities=18% Similarity=0.358 Sum_probs=111.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
+.+++||||||++..+..+..+|+. .||.++ .+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~--~~ 78 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPGPGGIEATRHIRQW--DG 78 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSSSCHHHHHHHHHHH--CT
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHh--CC
Confidence 4567999999999999999999998 799998 89999999999987 6799999999 9999999999999875 47
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+|||++|+..+.+...++++.|+++||.||++.++|..+|++++++.
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 79 AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999999987653
No 74
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.75 E-value=6.4e-18 Score=185.40 Aligned_cols=119 Identities=24% Similarity=0.394 Sum_probs=112.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
+||||||++.++..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+|+|++++++||+. .+.+|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~ell~~lr~~--~~~~pvI~ 77 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVNFIDFIKEN--SPDSVVIV 77 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTTHHHHHHHH--CTTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCeEEE
Confidence 79999999999999999999999999999999999999987 6799999999 9999999999999865 37899999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
+|++.+.+...++++.||++||.||++.++|..+|++++++...
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSK 121 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999987643
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.75 E-value=1.3e-17 Score=154.12 Aligned_cols=121 Identities=24% Similarity=0.363 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+||+++|+++++.|++. .+.+|||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~g~~~~~~l~~~--~~~~pii 79 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDVFEGEESLNLIRRIREE--FPDTKVA 79 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEECTTTHHHHHHHHHHHHH--CTTCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCcHHHHHHHHHHH--CCCCCEE
Confidence 4689999999999999999999999999999999999999987 68999999998889999999999865 4689999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
++|+..+.+...++++.|+++||.||++.++|..+|++++++...
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999876543
No 76
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=1.8e-17 Score=156.03 Aligned_cols=120 Identities=23% Similarity=0.464 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..+..+|...||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+.. .+.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~~--~~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILAL--DPDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCCE
Confidence 4689999999999999999999999999999999999999876 6799999999 9999999999999865 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|++|+..+......++..|+++||.||++.++|..+|+.++++..
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999998899999999999999999999999999999987654
No 77
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.75 E-value=1.7e-17 Score=165.20 Aligned_cols=120 Identities=23% Similarity=0.341 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
.+++||||||++.++..+..+|+.. +|.| ..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREK--SLS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHS--CCC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHHh--CCC
Confidence 3568999999999999999999987 4888 589999999999987 5799999999 9999999999999864 478
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|||++|+..+.+...++++.||++||.||+++++|..+|+.++++.
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998753
No 78
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.74 E-value=6.1e-18 Score=157.70 Aligned_cols=119 Identities=23% Similarity=0.406 Sum_probs=102.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 88 LKVLLVENDDSTRHVVAALLRN--CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~--~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
++||||||++..+..+..+|.. .||.+. .+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~l~~~l~~~--~~~~ 78 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMDGIELVDNILKL--YPDC 78 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSCHHHHHHHHHHH--CTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCC
Confidence 5899999999999999999973 588877 99999999999976 6799999999 9999999999999864 4789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|||++|+..+.+...++++.|+++||.||++.++|..+|++++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999888888899999999999999999999999999887653
No 79
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.74 E-value=2e-17 Score=183.94 Aligned_cols=120 Identities=28% Similarity=0.445 Sum_probs=112.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++.++..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 479999999999999999999999999999999999999987 5799999999 9999999999999876555789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|+..+.+...+++++||++||.||++.++|..+|+.++++.
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654
No 80
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.73 E-value=9.3e-18 Score=183.67 Aligned_cols=119 Identities=30% Similarity=0.551 Sum_probs=107.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++.++..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~--~~~~p 79 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQIDGLELIRRIRQT--ASETP 79 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSSSCTHHHHHHHHHT--TCCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHHhh--CCCCc
Confidence 35789999999999999999999999999999999999999987 6799999999 9999999999999865 57899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRR 208 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr 208 (780)
||++|+..+.+...++++.||++||.||+ ..++|..+|.+++++
T Consensus 80 ii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 80 IIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp EEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 688898888887764
No 81
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.73 E-value=1.8e-17 Score=163.95 Aligned_cols=118 Identities=31% Similarity=0.489 Sum_probs=109.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++||||||++..+..|..+|...||+|+ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... + .|
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~~~g~~~~~~l~~~~--~-~p 87 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASKR--I-AP 87 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--C-SC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCChHHHHHHHHhcC--C-CC
Confidence 36899999999999999999999999998 89999999999987 5799999999 99999999999998643 3 49
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|+..+.+...++++.|+++||.||++.++|..+|+.++++.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 82
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.73 E-value=1.5e-17 Score=167.03 Aligned_cols=121 Identities=30% Similarity=0.458 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~--~~~~~ 81 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAM--DNDVP 81 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCC
Confidence 45799999999999999999999999999999999999999987 6799999999 9999999999999864 47899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.....+++++||++||.||++.++|..+|+.++++..
T Consensus 82 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999988888899999999999999999999999999998754
No 83
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.73 E-value=4.6e-17 Score=148.09 Aligned_cols=121 Identities=18% Similarity=0.282 Sum_probs=108.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCC-CceEEEEcc-CCC-CCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPC-LSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~-~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~ 161 (780)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. . .|||||+|+ ||+ ++|++++++|++. .+
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~--~~ 78 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREI--DP 78 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHH--CT
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhc--CC
Confidence 456799999999999999999999999999999999999999986 5 799999999 997 9999999999875 46
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhcc
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 211 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~ 211 (780)
.+|||++|+..+......++..| +||.||++.++|..+|+++++....
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 79 NMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp TCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 89999999999888877777775 7999999999999999999876543
No 84
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.73 E-value=4.4e-17 Score=150.70 Aligned_cols=116 Identities=20% Similarity=0.357 Sum_probs=105.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
+||||||++..+..+..+|+.. |.|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. .+.+|||+
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~--~~~~~ii~ 77 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE--EWVQVIICDQRMPGRTGVDFLTEVRER--WPETVRII 77 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH--SCEEEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEE
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHHh--CCCCcEEE
Confidence 7999999999999999999876 999999999999999987 6799999999 9999999999999865 46789999
Q ss_pred EecCCCHHHHHHHHHC-CCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 168 MSSLDSMGLVFKCLSK-GAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 168 LSa~~~~e~~~~al~a-GAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|+..+.....+++.. |+++||.||++.++|..+|+.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 9999887788888875 59999999999999999999988764
No 85
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.73 E-value=3.5e-17 Score=151.21 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=108.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc----CCCceEEEEcc-CCCCCHHHHHHHHHhhc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL----TNHIDLVLTEV-MPCLSGVALLSKIMSHK 158 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~----~~~pDLVLlDi-MP~mdGleLl~~IRs~~ 158 (780)
+.++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ...|||||+|+ ||+++|+++++.||+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 456899999999999999999999998 999999999999999741 14699999999 99999999999998654
Q ss_pred CCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 159 TRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 159 ~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+.+|||++|+..+.+...++++.|+++||.||++.++|..++.....
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 4478999999999999999999999999999999999999998766443
No 86
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=6.8e-17 Score=148.75 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=107.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC-Cc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK-NL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~-~i 163 (780)
....+||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..||||| ||+++|+++++.|++. + .+
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi---~~~~~g~~~~~~l~~~---~~~~ 87 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM---VSDKNALSFVSRIKEK---HSSI 87 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--SCCSEEE---ECSTTHHHHHHHHHHH---STTS
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc--CCCCEEE---EcCccHHHHHHHHHhc---CCCc
Confidence 356799999999999999999999999999999999999999987 6799999 8999999999999865 5 79
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.+...++++.|+++||.||+ +.++|..+|..++++.
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 9999999999987654
No 87
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=5.3e-18 Score=154.57 Aligned_cols=119 Identities=16% Similarity=0.274 Sum_probs=106.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..++||||||++..+..+..+|+..++.|..+.+++++++.+.. . |||||+|+ ||+++|++++++||+. .+.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~--~~~~~ 76 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEH--KSPAS 76 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHT--TCCCE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhC--CCCCC
Confidence 45799999999999999999999998899999999999998865 5 99999999 9999999999999864 47899
Q ss_pred EEEEecCCCH-----HHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSM-----GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~-----e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|+..+. +...+++.+|+++||.||++.++|..+|++++...
T Consensus 77 ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 77 LILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9999998875 66778899999999999999999999999987543
No 88
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.72 E-value=9.4e-17 Score=148.58 Aligned_cols=122 Identities=20% Similarity=0.414 Sum_probs=106.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..+..+|+.. +|.++ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. .+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~ 83 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPSLDGVLLAQNISQF--AHK 83 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSSSCHHHHHHHHTTS--TTC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcc--CCC
Confidence 4579999999999999999999986 89855 89999999999987 6799999999 9999999999999764 466
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhccCC
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 213 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~~~s 213 (780)
+|||++|+..+ ...++++.|+++||.||++.++|..+|++++++++...
T Consensus 84 ~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 132 (143)
T 2qv0_A 84 PFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQN 132 (143)
T ss_dssp CEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 78999998743 56789999999999999999999999999988776543
No 89
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.71 E-value=3.8e-17 Score=164.01 Aligned_cols=118 Identities=32% Similarity=0.455 Sum_probs=110.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~i 78 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPGMSGTDVCKQLRAR---SSVPV 78 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHH---CSCSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCE
Confidence 3689999999999999999999999999999999999999987 5799999999 9999999999999864 57999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+.....+++++||++||.||++.++|..+|+.++++.
T Consensus 79 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 79 IMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999988888999999999999999999999999999998753
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.71 E-value=6.5e-17 Score=178.35 Aligned_cols=118 Identities=25% Similarity=0.456 Sum_probs=110.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+.+|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~ell~~lr~~--~~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKER--SPETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHH--CTTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEE
Confidence 479999999999999999999999999999999999999987 6799999999 9999999999999864 4789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++|++.+.+...++++.||++||.||++.++|..+|.+++++.
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643
No 91
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.71 E-value=4.8e-17 Score=152.74 Aligned_cols=122 Identities=22% Similarity=0.240 Sum_probs=100.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..|..+|+.. || .|..+.++.+|++.+.. ...|||||+|+ ||+++|+++++.|++. .+.
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~--~~~ 78 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA-DNTVDLILLDVNLPDAEAIDGLVRLKRF--DPS 78 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT-TCCCSEEEECC------CHHHHHHHHHH--CTT
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc-cCCCCEEEEeCCCCCCchHHHHHHHHHh--CCC
Confidence 4579999999999999999999988 88 67799999999999974 24699999999 9999999999999865 478
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
+|||++|+..+.+...++++.|+++||.||++.++|..+|++++++..
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 999999999888889999999999999999999999999999987644
No 92
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.71 E-value=3.4e-17 Score=166.28 Aligned_cols=117 Identities=25% Similarity=0.461 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.++||||||++.++..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. +.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~~~~~lr~~---~~~~i 79 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMNGIDVCRVLRAD---SGVPI 79 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHTT---CCCCE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCcE
Confidence 4689999999999999999999999999999999999999987 5799999999 9999999999999864 37999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|++|+..+......++++||++||.||+++++|..+|+.++++
T Consensus 80 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 80 VMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999999988899999999999999999999999999988754
No 93
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.71 E-value=4.9e-17 Score=150.52 Aligned_cols=118 Identities=25% Similarity=0.427 Sum_probs=102.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc---CCCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK---TRKN 162 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~---~~~~ 162 (780)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. ..+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 4689999999999999999999999999999999999999987 6799999999 99999999999998642 2467
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+|||++|+........ .+|+++||.||++.++|..+|..+++..
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876544332 7899999999999999999999987654
No 94
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.70 E-value=5.6e-17 Score=142.94 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=104.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.+||||||++..+..+..+|+..||+|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL--LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 489999999999999999999999999999999999999987 5799999999 9999999999999876545789999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
+++...+.. .++..|+++||.||++.++|..+|++++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 999987766 8899999999999999999999987754
No 95
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.70 E-value=5.6e-17 Score=173.90 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLR-NCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~-~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
..+||||||++.++..|..+|. ..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 3579999999999999999996 458999999999999999987 5799999999 99999999999998755467899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
||++|+..+.....+++++||++||.||++.++|..+|..+++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 96
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.69 E-value=8.3e-17 Score=149.87 Aligned_cols=111 Identities=22% Similarity=0.383 Sum_probs=93.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCC-CceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~-~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
...+||||||++..+..|..+|+.. ||.++ .+.++.+|++.+.. . .|||||+|+ ||+++|++++++||+.. +
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~~~g~~~~~~lr~~~--~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA--QPNVDLILLDIEMPVMDGMEFLRHAKLKT--R 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--CTTCCEEEECTTSCCCTTCHHHHHHHHHC--C
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc--CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--C
Confidence 4568999999999999999999998 89865 89999999999987 5 799999999 99999999999998653 3
Q ss_pred CccEEEEec--CCCHHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 004001 162 NLPVIMMSS--LDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 162 ~iPIIvLSa--~~~~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
+|||+++. ..+.+...++++.|+++||.||+++++|...
T Consensus 88 -~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 88 -AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp -CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred -CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 88999987 5566678899999999999999996555444
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.69 E-value=2e-16 Score=151.65 Aligned_cols=119 Identities=30% Similarity=0.438 Sum_probs=101.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~G-yeV-~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
.+.++||||||++..+..|..+|+..+ +.+ ..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~l~~~lr~~~--~ 98 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPNLNGIEALKLIMKKA--P 98 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHHS--C
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--C
Confidence 356799999999999999999999885 444 479999999999987 5799999999 99999999999998653 4
Q ss_pred CccEEEEecCCCHH--HHHHHHHCCCCeEEeCCCC---------HHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLDSMG--LVFKCLSKGAVDFLVKPIR---------KNELKNLWQHVWRR 208 (780)
Q Consensus 162 ~iPIIvLSa~~~~e--~~~~al~aGAddyL~KP~~---------~eeL~~~L~~llrr 208 (780)
+|||++++..+.. .+.+++++||++||.||++ .++|..+|++++.+
T Consensus 99 -~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 99 -TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp -CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred -ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 8999999977644 6779999999999999999 66777776666543
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.69 E-value=3.1e-17 Score=165.58 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G-yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||||||++.++..+..+|+..| |.++ .+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+|
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~lr~~--~~~~~ 77 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPDGNGIELCRDLLSR--MPDLR 77 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETTEEHHHHHHHHHHH--CTTCE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHHh--CCCCc
Confidence 689999999999999999999886 8855 79999999999987 5799999999 9999999999999865 57899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
||++|+..+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 78 CLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999988753
No 99
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.68 E-value=2.1e-16 Score=157.74 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=107.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+++||||||++..+..+..+|+..| .|..+.++.+|++.+ ..|||||+|+ ||+++|+++++.||+.. +.+||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~i 74 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETR--PETWV 74 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 3689999999999999999999988 889999999999877 3699999999 99999999999998653 78999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+.+...+++++||++||.||++.++|..+|+.++++.
T Consensus 75 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 75 ILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999998874
No 100
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.68 E-value=2e-18 Score=154.83 Aligned_cols=119 Identities=29% Similarity=0.454 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|++++++|++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~~i 78 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQR--HPMLPV 78 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHH--CTTSCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhh--CCCCCE
Confidence 4579999999999999999999999999999999999999876 6799999999 9999999999999764 478999
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++|+..+.+...++++.|+++||.||++.++|..+|++++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99999988888889999999999999999999999999988764
No 101
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.67 E-value=3.5e-17 Score=164.74 Aligned_cols=121 Identities=7% Similarity=-0.014 Sum_probs=105.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHHH-HHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRN-CGYEVTE-ATNGLQAWKI-LEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~~-A~dg~eALe~-L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~ 161 (780)
..++||||||++.++..|..+|+. .||.|+. +.++.+++.. +.. ..|||||+|+ ||+++|++++++||+. ..+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~-~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHI-SCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHH-HCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHh-hCC
Confidence 457999999999999999999994 6898864 4667766654 554 6799999999 9999999999999862 357
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
.+|||++|+..+......++++||++||.||+++++|..+|+.++++.
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 899999999999888999999999999999999999999999998753
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.67 E-value=1.8e-16 Score=174.61 Aligned_cols=122 Identities=26% Similarity=0.386 Sum_probs=107.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
..++||||||++.++..+..+|+. .+|.|..+.++.+|++.+... ..|||||+|+ ||+|+|++++++||... +.+
T Consensus 2 ~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~--~~~ 78 (400)
T 3sy8_A 2 NDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSG--KVH 78 (400)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHT--CEE
T ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCc
Confidence 357999999999999999999998 578999999999999999761 3699999999 99999999999998653 667
Q ss_pred cEEEEecCCCH-----HHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 164 PVIMMSSLDSM-----GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 164 PIIvLSa~~~~-----e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|||++|+.... ....+++.+||++||.||++.++|..+|.+++++..
T Consensus 79 ~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 79 SVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 78888887766 567789999999999999999999999999987654
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.66 E-value=1.3e-16 Score=156.64 Aligned_cols=116 Identities=14% Similarity=0.218 Sum_probs=104.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+..++||||||++..+..+..+|...||.|..+.++.+|+ . ..|||||+|+ ||+++|+ +++.++... +.+
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~ 80 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGT--PRT 80 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSC--TTC
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccC--CCC
Confidence 4567999999999999999999999999999888887766 2 5799999999 9999999 888887543 789
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|||++|+..+.+...++++.|+++||.||++..+|..+|..++++.
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 81 TLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.64 E-value=2.4e-16 Score=145.26 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=100.8
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
.....+||||||++..+..+..+|+..||.|..+.++.+|++.+... ..|||||+|+ ||+++|+++++.||+ ..+.
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~l~~--~~~~ 88 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLSIFSLLDIVKE--QTKQ 88 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSCHHHHHHHHTT--SSSC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHh--hCCC
Confidence 34667999999999999999999999999999999999999988641 3699999999 999999999999976 3578
Q ss_pred ccEEEEe-cCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 163 LPVIMMS-SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLS-a~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+|||++| +..+... .+++ +++||.||++.++|..+|++++++
T Consensus 89 ~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 9999999 8776655 5555 999999999999999999887643
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.64 E-value=7.9e-16 Score=153.90 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=106.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIv 167 (780)
++||||||++.++..+..+|+..||.|..+.++.+|++.+.. ..||||| ||+++|+++++.||+. ...+|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi---lp~~~g~~~~~~lr~~--~~~~~ii~ 73 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM---VSDKNALSFVSRIKEK--HSSIVVLV 73 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE---ECCTTHHHHHHHHHHH--CTTSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE---eCCCCHHHHHHHHHhC--CCCCcEEE
Confidence 479999999999999999999999999999999999999976 6799999 8999999999999865 23799999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeCCC-CHHHHHHHHHHHHHH
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRR 208 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~KP~-~~eeL~~~L~~llrr 208 (780)
+|+..+.+...+++++||++||.||+ +.++|..+|+.++++
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 999999999998765
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.59 E-value=7.1e-15 Score=160.28 Aligned_cols=118 Identities=27% Similarity=0.483 Sum_probs=103.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-Gye-V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
..++||||||++..+..|..+|+.. ||+ |..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++. .+
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~dGlell~~l~~~--~p- 76 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRL--RP- 76 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHS--SC-
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHhc--CC-
Confidence 3579999999999999999999986 898 4599999999999987 5799999999 9999999999999764 34
Q ss_pred ccEEEEecCCCH--HHHHHHHHCCCCeEEeCCCCH---------HHHHHHHHHHHHH
Q 004001 163 LPVIMMSSLDSM--GLVFKCLSKGAVDFLVKPIRK---------NELKNLWQHVWRR 208 (780)
Q Consensus 163 iPIIvLSa~~~~--e~~~~al~aGAddyL~KP~~~---------eeL~~~L~~llrr 208 (780)
+|||++|+..+. +...++++.||++||.||++. ++|...|+.+++.
T Consensus 77 ~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 77 MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 999999998775 447899999999999999983 7788888877654
No 107
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.55 E-value=4.4e-15 Score=176.89 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=109.3
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC----CCHHHHHHHH
Q 004001 88 LKVLLVENDD-ST-------RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGVALLSKI 154 (780)
Q Consensus 88 lrVLIVDDD~-~~-------r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~----mdGleLl~~I 154 (780)
|+||||||+. .+ ++.|...|+..||+|..+.++++|+..+.. ...||+||+|+ ||+ ++|++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~-~~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT-TCCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-CCCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 3899999999 88 999999999999999999999999999986 22599999999 999 9999999999
Q ss_pred HhhcCCCCccEEEEecCCC-HHHHHHHHHCCCCeEEeCCCCHHH-HHHHHHHHHHHhc
Q 004001 155 MSHKTRKNLPVIMMSSLDS-MGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWRRCH 210 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~~~-~e~~~~al~aGAddyL~KP~~~ee-L~~~L~~llrr~~ 210 (780)
|+.. +.+|||++|+... .+.+...+..||+|||.||++..| |.++|++++||+.
T Consensus 80 R~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 80 HERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 8753 6799999999877 677788899999999999999999 9999999999864
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.55 E-value=7.6e-15 Score=152.48 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=88.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~-~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
.+||||||++.++..|..+|.. .||.|..+ ++.+++..+.. ..|||||+|+ ||+++|++++++||+. .+||
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~----~~pv 77 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER----GLPV 77 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT----TCCE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC----CCCE
Confidence 5899999999999999999976 47887654 55566665544 5799999999 9999999999999853 4899
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 203 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~ 203 (780)
|++|++.+.+...+++++||++||.||+.. .+...+.
T Consensus 78 i~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~-~~~~~~~ 114 (259)
T 3luf_A 78 VILTADISEDKREAWLEAGVLDYVMKDSRH-SLQYAVG 114 (259)
T ss_dssp EEEECC-CHHHHHHHHHTTCCEEEECSSHH-HHHHHHH
T ss_pred EEEEccCCHHHHHHHHHCCCcEEEeCCchh-HHHHHHH
Confidence 999999999999999999999999999744 3333333
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.05 E-value=2.9e-09 Score=118.27 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=104.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iP 164 (780)
...+||+|||+...+..+...|.. .+.+....++.+++. +.. ..||+||+|+ ||+|+|+++++.||.......+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 345899999999998888888865 467788888888863 333 5799999999 99999999999999877677899
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
||++|+........++++.|+++|+.||+...+|...+..++++.
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887654
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.87 E-value=8.5e-10 Score=110.24 Aligned_cols=92 Identities=25% Similarity=0.440 Sum_probs=75.9
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 112 YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 112 yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +..+|++++.....+...++++.|+++||.
T Consensus 6 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~ 81 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81 (237)
T ss_dssp EEEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEe
Confidence 345568899999999987 5799999999 99999999999998654 445566666666688899999999999999
Q ss_pred CC--CCHHHHHHHHHHHHH
Q 004001 191 KP--IRKNELKNLWQHVWR 207 (780)
Q Consensus 191 KP--~~~eeL~~~L~~llr 207 (780)
|| ++..+|...+.+.+.
T Consensus 82 kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 82 NTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp SHHHHHCTHHHHHHHHHHT
T ss_pred CCcccChHHHHHHHHHHhC
Confidence 99 777788877777654
No 111
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.16 E-value=0.0024 Score=57.48 Aligned_cols=104 Identities=23% Similarity=0.230 Sum_probs=84.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..||+|..|-.+...++.++....|++++..... . ....|+|++++ +|. .|.+.......-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-------~-e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-------Q-ELSADLVVCEYSLLPR--------EIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-------C-CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC-------C-cccceeEEEeeecChH--------HhcCCCCCCcccE
Confidence 3689999999999999999987789988765422 1 24579999998 675 2344444556668
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|++-..-+++.+.+.+..||. ||.+|+++.-|.++|+..++.
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 888888889999999999999 999999999999999999875
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.12 E-value=0.00041 Score=71.13 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+.+||||||++..+..|..+|..+|++|..+.+. ....||+||+|+ ||...+. .
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~--------------~ 65 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG--------------R 65 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS--------------S
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc--------------c
Confidence 467799999999999999999999999999887641 125699999999 8875431 1
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+|.++...... ....+...|+.||+.+.+|...+.+++.
T Consensus 66 ~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 66 AVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred eEEEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 255555543210 0123456899999999888888877653
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.08 E-value=0.00078 Score=79.95 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
...|...|++.||+|+.+.+.++|+..+++ ...+++||+|+ |+ +.+++++||++ ..++||++++.......+.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~-~~~i~avIld~d~~---~~~ll~~Ir~~--~~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKM--NENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHH-CTTEEEEEEEHHHH---HHHHHHHHHHH--CTTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-CCCceEEEEecccc---HHHHHHHHHHh--CCCCCEEEEecCCcccccc
Confidence 345668888999999999999999999987 35699999999 85 68999999865 4789999999885433222
Q ss_pred HHHHCCCCeEEeCCCC-HHHHHHHHHHHHHHh
Q 004001 179 KCLSKGAVDFLVKPIR-KNELKNLWQHVWRRC 209 (780)
Q Consensus 179 ~al~aGAddyL~KP~~-~eeL~~~L~~llrr~ 209 (780)
-..-.++++|+.+... ++.+...|.+..+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 93 LNDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GTTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1123578899998764 555556666666554
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.64 E-value=0.04 Score=53.42 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=86.0
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHH
Q 004001 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~-md-GleLl~~IR 155 (780)
+..+|||. |-+..=..++..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. +.. +. -.++++.||
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHH
Confidence 34578887 77888889999999999999984 4577888888887 7899999887 542 22 245677776
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
+.. .++++|++ .+.........+.+.|++.++..--+..+....+..++...
T Consensus 95 ~~g-~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELG-ADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTT-CTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcC-CCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 543 24577654 45555555556778999987765556677777777777654
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.47 E-value=0.032 Score=54.96 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEcc--CCCCCHH--HHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE----
Q 004001 118 TNGLQAWKILEDLTNHIDLVLTEV--MPCLSGV--ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL---- 189 (780)
Q Consensus 118 ~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGl--eLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL---- 189 (780)
.+..+.++.+... ...+++++++ ++.++|+ +++++++. ..++|||++++....+...++++.|+++++
T Consensus 130 ~~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~---~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a 205 (237)
T 3cwo_X 130 ILLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRP---LTTLPIIASGGAGKMEHFLEAFLAGADAALAASV 205 (237)
T ss_dssp EEHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGG---GCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred cCHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHH---hcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHH
Confidence 3456666666542 3456888885 6666664 45666543 357999999999999999999999999995
Q ss_pred --eCCCCHHHHHHHHH
Q 004001 190 --VKPIRKNELKNLWQ 203 (780)
Q Consensus 190 --~KP~~~eeL~~~L~ 203 (780)
.+|+++.++...+.
T Consensus 206 ~~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 206 FHFREIDVRELKEYLK 221 (237)
T ss_dssp HHTTSSCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 68999999877643
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=94.93 E-value=0.33 Score=45.57 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=76.8
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHhhc
Q 004001 89 KVLLV----ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHK 158 (780)
Q Consensus 89 rVLIV----DDD~~~r~~L~~lL~~~GyeV~---~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-md-GleLl~~IRs~~ 158 (780)
+|||. |-+..=..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. +.. +. -.++++.|++..
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 55544 4455666788999999999998 45678899998887 6799999887 532 22 234677776543
Q ss_pred CCCCccEEEEecCC-----CHH-HHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 159 TRKNLPVIMMSSLD-----SMG-LVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 159 ~~~~iPIIvLSa~~-----~~e-~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
..+++|++ .+.. +.. ....+.++|++.|+.---+..++...|...+
T Consensus 83 -~~~i~v~v-GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 83 -LEGILLYV-GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp -CTTCEEEE-EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred -CCCCEEEE-ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 23566654 4432 111 2446789999988876667777766665543
No 117
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=94.37 E-value=0.34 Score=56.27 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=104.5
Q ss_pred cHHHHHHHHhCCc---EEeccccC--CcceeeEEEEEEecc---ccCCCCCCCCCccchhhhcccCCccEEEEE----eC
Q 004001 28 AVVGEQQHLVGDD---RLNDSSIA--EDVKDGCEGAVTASA---VLQMPQEQPQGAMVCWERFLHLRSLKVLLV----EN 95 (780)
Q Consensus 28 AIvr~LV~lmGG~---I~v~S~~G--~GS~fg~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~lrVLIV----DD 95 (780)
.-+++|+..||-. +...-.++ .++-|-+...+.... ....+...+...........+.+..+|||. |-
T Consensus 535 ~AA~qla~kMGl~~~~Vv~~~~l~~~e~Tff~vyG~~~~~VD~~~I~Vp~~~~~ls~eEi~~~i~e~kGKVVIATVgGD~ 614 (763)
T 3kp1_A 535 FAAIEFAKKMNLEEVEVINREVMQEAEGTRIELKGRVPFSIDINSLVIPPEPEILSEDEIREDIEKTPLKIVAATVGEDE 614 (763)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEETTTEEEEEEEEECCCCEEGGGCCCCC---CCCHHHHHHHHHHSCCEEEEEEBTTCC
T ss_pred HHHHHHHHHcCCCChheeeeeeccCCCceEEEEEeeccceechhheecccccCCCCHHHHHhhhhccCCEEEEEeCCCCh
Confidence 3567899999987 33333333 345554444432221 111222211111111112233456788888 44
Q ss_pred CHHHHHHH----HHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC----CCHH-HHHHHHHhhcCCCC
Q 004001 96 DDSTRHVV----AALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGV-ALLSKIMSHKTRKN 162 (780)
Q Consensus 96 D~~~r~~L----~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~----mdGl-eLl~~IRs~~~~~~ 162 (780)
+..=..++ ..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. |.. +..+ ++++.|++......
T Consensus 615 HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDk 692 (763)
T 3kp1_A 615 HSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDK 692 (763)
T ss_dssp CCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTT
T ss_pred hhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCC
Confidence 44433333 5789999999984 3478889999987 7899999987 764 3333 57777876654334
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
++||+=-.....+ -+.+.||+.|..-.....++...|...++..
T Consensus 693 IkVIVGGa~~tqd---~AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 693 IMIGCGGTQVTPE---VAVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp SEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHH---HHHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 6666544344433 3458999999988888888777776665543
No 118
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=94.09 E-value=0.0059 Score=66.76 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=56.3
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEeccccC-----------CCCCCCCC-ccchhhhcccCCccE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ-----------MPQEQPQG-AMVCWERFLHLRSLK 89 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~~~l~-----------~~~~~~~~-~~~~~~~~~~~~~lr 89 (780)
+...+++||+++++.|||.|.++|.+|.|++|.+.+|++...... .|...... ............+..
T Consensus 210 G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~~~~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~~~~~ 289 (379)
T 1b3q_A 210 GRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRD 289 (379)
T ss_dssp --CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCEEEEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEETTEE
T ss_pred CccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCccccceEEEEEECCEEEccchheeeEEEeeCHHHeEEeCCcc
Confidence 456679999999999999999999999999999999875531100 00000000 000000011123467
Q ss_pred EEEEeCCHHHHHHHHHHHHh
Q 004001 90 VLLVENDDSTRHVVAALLRN 109 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~ 109 (780)
||+++|+......|..+|..
T Consensus 290 vl~vrg~~vpl~~L~~lL~~ 309 (379)
T 1b3q_A 290 VIVIRGEVIPVYRLWEVLQI 309 (379)
T ss_dssp EEEETTEEEEEEEHHHHTTC
T ss_pred EEEECCcEEeEEEHHHHhCC
Confidence 99999998888888888764
No 119
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=93.46 E-value=0.031 Score=54.34 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=34.5
Q ss_pred CCCChhhhH--HHHHHHhhhh------CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 2 NVDGKADKR--LQELNHCLQA------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 2 ~~~g~g~~r--~~~L~~~l~~------~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.|+|.|+.- ..+|+..+.. .+..-+++||+++++.|||.|.++|..|.|++|.+.+|.
T Consensus 151 ~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 151 RDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE 216 (222)
T ss_dssp ECSCC--------------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC
T ss_pred EECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecC
Confidence 367887652 2233333321 134556999999999999999999999998888776664
No 120
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=93.20 E-value=0.031 Score=56.38 Aligned_cols=38 Identities=13% Similarity=-0.071 Sum_probs=33.0
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+..-+++||+++++.|||.|.+.|.+|.|++|.+.+|.
T Consensus 210 G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~ 247 (258)
T 2c2a_A 210 GTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 247 (258)
T ss_dssp -CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeC
Confidence 44567999999999999999999999999888887774
No 121
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=92.92 E-value=0.019 Score=65.03 Aligned_cols=180 Identities=10% Similarity=-0.078 Sum_probs=91.1
Q ss_pred CCCCCcHHHHHHHHhCCc-EEeccccCCcc-eeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEEEeCCHHHH
Q 004001 23 KRDENAVVGEQQHLVGDD-RLNDSSIAEDV-KDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTR 100 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~-I~v~S~~G~GS-~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDD~~~r 100 (780)
...+++||+.++++|||. +.+.|..+.|+ .|.+.+++.+... .+......+...+ .......+.|.+.++.....
T Consensus 109 ~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~--~g~~~~~~~~~~~-~~~~GT~V~v~l~~~~~e~~ 185 (471)
T 1mu5_A 109 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN--EPIIVERGSVENT-RGFHGTSVAISIPGDWPKAK 185 (471)
T ss_dssp CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTC--CEEEEEEEEEECC-TTCCEEEEEEEEECCHHHHH
T ss_pred ceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccccc--CCcccccccccCC-CCCCCEEEEEEEcCCcchHH
Confidence 345689999999999999 99999999876 6666666543200 0000000000000 00011223344334333332
Q ss_pred HHHHHHHHh-----CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc-cEE-EEec--
Q 004001 101 HVVAALLRN-----CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL-PVI-MMSS-- 170 (780)
Q Consensus 101 ~~L~~lL~~-----~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i-PII-vLSa-- 170 (780)
..|..+|++ -++.+....++.+++...+....-|+. .+. ||.++|+++...++-....... .|. +|+.
T Consensus 186 ~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~f 263 (471)
T 1mu5_A 186 SRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEF 263 (471)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSS
T ss_pred HHHHHHHHHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHHHHHhcCCCcchHHhhhccc
Confidence 344444443 367888777766554433321112222 466 8999998877766532221111 111 1111
Q ss_pred -CCCHHHHHHH-HHCCCCeEE-eCCCCHHHHHHHHHHHHH
Q 004001 171 -LDSMGLVFKC-LSKGAVDFL-VKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 171 -~~~~e~~~~a-l~aGAddyL-~KP~~~eeL~~~L~~llr 207 (780)
.-....+.+. -.+|.+.++ .|.++.+++..+++.+-.
T Consensus 264 ~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (471)
T 1mu5_A 264 QSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 303 (471)
T ss_dssp SSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHh
Confidence 1122333332 246776654 356777777776666544
No 122
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=91.83 E-value=0.088 Score=51.88 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=41.9
Q ss_pred CCChhhhHHHHHHHhh---h----hCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 3 VDGKADKRLQELNHCL---Q----AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 3 ~~g~g~~r~~~L~~~l---~----~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
++|.|... ..+.+.+ . ..+..-+++||+++++.|||.|.+.+..+.|++|.+.+|+.
T Consensus 162 D~G~gi~~-~~~~~if~~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~ 225 (244)
T 3d36_A 162 DTGVGMTK-EQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLA 225 (244)
T ss_dssp ECSSCCCH-HHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred ecCCCCCH-HHHHHHhcccccCCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCC
Confidence 67777652 2333433 1 23445669999999999999999999999988887777754
No 123
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=91.55 E-value=0.97 Score=47.32 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=79.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC----
Q 004001 86 RSLKVLLV----ENDDSTRHVVAAL--------LRNC-GYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC---- 144 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~l--------L~~~-GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP~---- 144 (780)
+..+||+. |-+..=..++..+ |+.. ||+|+. .-..++.++.+.+ ..+|+|.+-. |..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCCccch
Confidence 34577665 5666666777777 9999 999974 3467888888887 7899999988 654
Q ss_pred CCH-HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 145 LSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 145 mdG-leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+.. .++++.|++.....+++|++=-...+. ..+.+.|++.|..--....++...|...+..
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~---~~a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCH---HHHHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 222 246777765443344666544443333 3367889998887777777777766655543
No 124
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=91.44 E-value=0.083 Score=53.17 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=41.3
Q ss_pred CCChhhhHHHHHHHhh------hhCCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 3 VDGKADKRLQELNHCL------QAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 3 ~~g~g~~r~~~L~~~l------~~~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
++|.|+. ...+.+.+ ...+..-+++||+++++.|||.|.+.+..|.|++|.+.+|+.
T Consensus 194 D~G~Gi~-~~~~~~if~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~ 256 (268)
T 4ew8_A 194 DTGRGVP-FHVQAHIFDRFVGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPET 256 (268)
T ss_dssp ESSCCCC-HHHHTTTTSTTCCCSSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECC
T ss_pred cCCCCCC-HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCC
Confidence 6788765 22333333 122334558999999999999999999999988888777754
No 125
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=91.17 E-value=0.68 Score=46.11 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=69.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHh
Q 004001 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdG-leLl~~IRs 156 (780)
..+||+. |-+..-..++..+|+..||+|+.. ...++.++.+++ ..||+|.+-. +. .+.. .++++.||+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478887 677788899999999999999853 356777777776 6799999987 54 2333 457778876
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
....+++||++--.....+. +.+.|+|.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 53335688776655555433 24579887654
No 126
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=90.85 E-value=0.13 Score=47.14 Aligned_cols=37 Identities=16% Similarity=-0.032 Sum_probs=31.0
Q ss_pred CCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
..-+++||+++++.|||.+.+.+..+.|++|.+.+|+
T Consensus 112 ~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 148 (150)
T 1ysr_A 112 SGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPG 148 (150)
T ss_dssp --CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeC
Confidence 3556999999999999999999999988888777764
No 127
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=90.65 E-value=0.13 Score=49.46 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=33.8
Q ss_pred CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 21 GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 21 ~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.+..-+++||+++++.|||.|.+.+..+.|++|.+.+|+
T Consensus 150 ~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 150 SGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp GTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 355677999999999999999999999998888877764
No 128
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.50 E-value=1.8 Score=45.30 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=67.8
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 103 VAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 103 L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP-----~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
..+.|.+.||.|. ++.+...|.++.. ..+++| +.+ .| +..-+++++.|++. .++|||+=.+-...
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~---~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI~TP 199 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE---IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTA 199 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH---SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH---hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCCCCH
Confidence 4455667799987 5566666655544 457776 554 43 23347899999763 57999987788899
Q ss_pred HHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHH
Q 004001 175 GLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVW 206 (780)
Q Consensus 175 e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~ll 206 (780)
+++..++++|++++++ |--++..+...+...+
T Consensus 200 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 200 SDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999975 5445666665555544
No 129
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=90.45 E-value=0.13 Score=33.45 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHhhhcccC.....
Q 004001 723 ADREAAVTKYRQKKTERC..... 740 (780)
Q Consensus 723 ~~r~~~~~~~~~k~~~r~..... 740 (780)
..|.++|.||-||||.|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 569999999999999984
No 130
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.97 E-value=1.4 Score=44.87 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C-----CCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 97 DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M-----PCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M-----P~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
+.....+...+++.|..+. .+.+.+++....+ ..+|+|.+-. . +...+++++++|++. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~ 187 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ---KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAE 187 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh---CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEE
Confidence 4444455555677788766 6788888877765 3688886422 1 233468999999642 7999999
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-.+.+.+.+++++||+.++.
T Consensus 188 GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 188 GRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 9988999999999999999986
No 131
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=89.77 E-value=0.63 Score=47.06 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=69.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEE--cc-C-CCCC-HHHHHHHH
Q 004001 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLT--EV-M-PCLS-GVALLSKI 154 (780)
Q Consensus 87 ~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLl--Di-M-P~md-GleLl~~I 154 (780)
..+|||. |-+..=..++..+|+..||+|+.. -..++.++.+.+ ..+|+|.+ -. | +.+. --++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 3477777 667778889999999999999853 367778888887 78999999 76 5 3333 34678888
Q ss_pred HhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 155 MSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 155 Rs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++.....++||++--+....+. +.+.|||.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 7654333688776555555443 34569988864
No 132
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=89.77 E-value=2.8 Score=43.33 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=74.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHh
Q 004001 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~---A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdG-leLl~~IRs 156 (780)
..+||+. |-+..-..++..+|+..||+|+. -...++.++.+.+ ..+|+|.+-. |. .+.. .++++.|++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 3478877 66777888999999999999863 3567778888877 6799999987 64 3443 467888875
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
. .+.+||++--.....+. +...|++.|..-. .+....+..++
T Consensus 201 ~--~~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 201 N--GIKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp T--TCCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHH
T ss_pred c--CCCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHH
Confidence 4 34578776555545433 2378987665433 44445555544
No 133
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=89.72 E-value=0.18 Score=55.19 Aligned_cols=39 Identities=5% Similarity=-0.308 Sum_probs=33.5
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
+.+-+++||+.+++.|||.|.+.|..|.|++|.+.+|..
T Consensus 325 G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~ 363 (407)
T 2q8g_A 325 GFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKAL 363 (407)
T ss_dssp CTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred CcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCC
Confidence 344569999999999999999999999998888877753
No 134
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=89.64 E-value=0.18 Score=54.78 Aligned_cols=38 Identities=5% Similarity=-0.324 Sum_probs=32.2
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+.+-+++||+.+++.|||.|.+.|..|.|++|.+.+|.
T Consensus 312 G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 312 GFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA 349 (394)
T ss_dssp --CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecC
Confidence 34456999999999999999999999998888887774
No 135
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=89.52 E-value=0.17 Score=55.66 Aligned_cols=39 Identities=5% Similarity=-0.300 Sum_probs=33.5
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
+..-+++||+.+++.+||.|.+.|..|.|++|.+.+|..
T Consensus 336 G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~ 374 (419)
T 1y8o_A 336 GFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKAL 374 (419)
T ss_dssp -CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESC
T ss_pred CeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCC
Confidence 344569999999999999999999999999988888754
No 136
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=89.46 E-value=2.6 Score=50.28 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=84.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-C-CHHHHHHHHH
Q 004001 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-L-SGVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~-m-dGleLl~~IR 155 (780)
+..+|||. |.+..=..++..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-. |.. + ...++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHH
Confidence 45678876 455556678888999999999843 467888888887 6899998877 532 2 2356778887
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
+... .+++ |++-+..-......+.+.|++.|+..--+..++...+..++....
T Consensus 681 ~~G~-~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~~ 733 (762)
T 2xij_A 681 SLGR-PDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCL 733 (762)
T ss_dssp HTTC-TTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCC-CCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHHh
Confidence 6542 3444 444442223344567899999999866688888888888775543
No 137
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=89.34 E-value=0.11 Score=56.49 Aligned_cols=39 Identities=5% Similarity=-0.271 Sum_probs=33.1
Q ss_pred CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 21 GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 21 ~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
.+..-+++||+.+++.|||.|.+.|..|.|++|.+.+|.
T Consensus 334 ~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~ 372 (388)
T 1gkz_A 334 HGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH 372 (388)
T ss_dssp SCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecC
Confidence 345567999999999999999999999998887776653
No 138
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=88.67 E-value=0.14 Score=47.03 Aligned_cols=37 Identities=11% Similarity=-0.090 Sum_probs=30.8
Q ss_pred CCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
..-+++||+++++.|||.+.+.+..+.|++|.+.+|+
T Consensus 108 ~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 144 (152)
T 1id0_A 108 QGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGR 144 (152)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEec
Confidence 4556899999999999999999999887777666554
No 139
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=88.63 E-value=2 Score=43.79 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C-----CCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 97 DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M-----PCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M-----P~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
+.....+...+++.|..+. .+.+.+++....+ ..+|+|.+-. . ....+++++++|++. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR---LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH---TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh---CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 4444455555677788766 6778888877665 3588886422 1 223468999999652 7999999
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-.+.+.+.+++++||+.++.
T Consensus 188 GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 9988899999999999999985
No 140
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=88.49 E-value=2.7 Score=49.86 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHH
Q 004001 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIM 155 (780)
Q Consensus 86 ~~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~-md-GleLl~~IR 155 (780)
+..+|||. |-+..=..++..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-. |.. +. ..++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHH
Confidence 45678876 555566678888999999999853 367888998887 7899998877 542 22 356788887
Q ss_pred hhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+... .+++ |++-+..-......+.+.|++.|+.--....++...|...++.
T Consensus 673 ~~G~-~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGR-PDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTC-TTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCC-CCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 6542 3444 4455433333445678999999998667777777777666643
No 141
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=88.26 E-value=0.2 Score=54.52 Aligned_cols=39 Identities=5% Similarity=-0.323 Sum_probs=33.3
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
+..-+++||+.+++.|||.|.+.|..|.|++|.+.+|..
T Consensus 312 G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 350 (394)
T 2e0a_A 312 GFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKAL 350 (394)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred CcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCC
Confidence 344569999999999999999999999988888877743
No 142
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=88.02 E-value=0.12 Score=33.99 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhcccCCCC
Q 004001 725 REAAVTKYRQKKTERCFRK 743 (780)
Q Consensus 725 r~~~~~~~~~k~~~r~~~k 743 (780)
|.+.|.||-||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999987655
No 143
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=86.33 E-value=0.52 Score=44.55 Aligned_cols=41 Identities=15% Similarity=-0.022 Sum_probs=34.8
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEEec
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTAS 62 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~~~ 62 (780)
+...+++||+++++.|||.+.+.+..+.|++|.+.+|+...
T Consensus 114 g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~ 154 (177)
T 3sl2_A 114 GTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEE 154 (177)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC-
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCC
Confidence 34455899999999999999999999999999888887654
No 144
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=86.15 E-value=0.17 Score=45.59 Aligned_cols=38 Identities=13% Similarity=-0.111 Sum_probs=30.6
Q ss_pred CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 21 GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 21 ~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
.+..-+++|++++++.+||.+.+.+.+ |++|.+.+|+.
T Consensus 89 ~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 89 FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 344566999999999999999999988 77777776643
No 145
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=86.15 E-value=0.48 Score=44.00 Aligned_cols=38 Identities=11% Similarity=-0.225 Sum_probs=31.2
Q ss_pred CCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 22 ~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+..-+++||+++++.|||.|.+.+..+.|++|.+.+|+
T Consensus 112 g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 149 (161)
T 1bxd_A 112 GTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPV 149 (161)
T ss_dssp CCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECC
T ss_pred CcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeC
Confidence 34556999999999999999999998887777666654
No 146
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=85.70 E-value=0.32 Score=44.60 Aligned_cols=36 Identities=3% Similarity=-0.255 Sum_probs=29.5
Q ss_pred CCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 23 ~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
..-+++||+++++.|||.+.+.+..+. ++|.+.+|+
T Consensus 123 ~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~ 158 (160)
T 1r62_A 123 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 158 (160)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEE
T ss_pred CccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEec
Confidence 344589999999999999999999886 777777665
No 147
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=84.57 E-value=4.3 Score=42.54 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=64.4
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHHhhcCCCC-ccEEEEecCCCH
Q 004001 104 AALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIMSHKTRKN-LPVIMMSSLDSM 174 (780)
Q Consensus 104 ~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----GleLl~~IRs~~~~~~-iPIIvLSa~~~~ 174 (780)
.+.|.+.||.|. +..|...|-+ +.+ ..+++| +.+ .|-.. -.++++.|++. ..+ +|||+=.+-...
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~-l~~--~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~--~~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKR-LAA--LGTATV-MPLAAPIGSGWGVRTRALLELFARE--KASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHH-HHH--HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT--TTTSSCBEEESCCCSH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHH-HHh--cCCCEE-EecCccCcCCcccCCHHHHHHHHHh--cCCCCeEEEeCCCCCH
Confidence 344556799987 4456654444 443 346665 665 44222 35678888652 246 999988888899
Q ss_pred HHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHH
Q 004001 175 GLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVW 206 (780)
Q Consensus 175 e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~ll 206 (780)
+++..++++||+++|+ |--++..+...+...+
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999875 5455666666555544
No 148
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=84.23 E-value=8.9 Score=40.04 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=65.7
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCC-CCHHHHHHHHHhhcCCCC
Q 004001 89 KVLLVEN--DDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 89 rVLIVDD--D~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~-mdGleLl~~IRs~~~~~~ 162 (780)
.|||+.. ++.....+....+.+|..+. .+.+.+++...+.. .+|+|-+-- +-. .-+++.+.+|... ...+
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~-v~~~ 213 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPG-LPSS 213 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGG-SCTT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHh-Cccc
Confidence 4666432 23334445556667898765 78888887666653 478777653 211 1235667777543 2236
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+|||..++-.+.+.+.+++++|++++++
T Consensus 214 ~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 214 VIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp SEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8999999988899999999999999987
No 149
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=82.71 E-value=0.62 Score=41.19 Aligned_cols=35 Identities=3% Similarity=-0.082 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEE
Q 004001 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 25 ~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
-+++|++++++.+||.+.+.+..+.|++|.+.+|+
T Consensus 88 lGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 122 (124)
T 3zxq_A 88 SGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPL 122 (124)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEEC
T ss_pred cCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEec
Confidence 45899999999999999999999988888777764
No 150
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=82.33 E-value=11 Score=36.78 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHH
Q 004001 110 CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 110 ~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
.+..+. .+.+..++..... ..+|.|+++. .|. ..+++.+++|++.. .+||++..+-. .+.+.++
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~ 179 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREV 179 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHH
T ss_pred CCCEEEEecCCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHH
Confidence 344433 5678888766544 3589999876 553 34788888886532 68988877665 7778888
Q ss_pred HHCCCCeEEe
Q 004001 181 LSKGAVDFLV 190 (780)
Q Consensus 181 l~aGAddyL~ 190 (780)
++.|++.+..
T Consensus 180 ~~~Ga~gv~v 189 (215)
T 1xi3_A 180 LKTGVDGIAV 189 (215)
T ss_dssp HTTTCSEEEE
T ss_pred HHcCCCEEEE
Confidence 9999999853
No 151
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=81.61 E-value=0.22 Score=57.11 Aligned_cols=178 Identities=10% Similarity=-0.056 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHHHhCCc-EEeccccCCcc-eeeEEEEEEeccccCCCCCCCCCccchhhhcccCCccEEEE-EeCCHHHH
Q 004001 24 RDENAVVGEQQHLVGDD-RLNDSSIAEDV-KDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLL-VENDDSTR 100 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~-I~v~S~~G~GS-~fg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lrVLI-VDDD~~~r 100 (780)
..+++||+.++++|||. |.+.|..+.|+ .|.+.+++.+..... ......+...+ ....+-+|.| +.++....
T Consensus 109 GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g--~~~~~~~~~~~---~~~~GT~V~v~l~~~~~e~ 183 (530)
T 2zbk_B 109 GLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEP--IIVERGSVENT---RGFHGTSVAISIPGDWPKA 183 (530)
T ss_dssp SSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEE--EEEEEEEEECC---SSCCEEEEEEEEECCHHHH
T ss_pred cchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCC--ccccccccCCC---CCCCCcEEEEEeccchhhH
Confidence 34589999999999999 99999999887 777776665321000 00000000000 0112334443 23443322
Q ss_pred -HHHHHHHHhC-----CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc-CCCCccEEE-----
Q 004001 101 -HVVAALLRNC-----GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK-TRKNLPVIM----- 167 (780)
Q Consensus 101 -~~L~~lL~~~-----GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~-~~~~iPIIv----- 167 (780)
..+..+|+.. +..+....++.+.+........-++ ..+. +|...|+++...++... ....+.|.-
T Consensus 184 ~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~~~lp~--~~~~~~~~~~Gi~~~~~l~~~~~~~~~~~l~~fl~~~ 261 (530)
T 2zbk_B 184 KSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPK--PPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNE 261 (530)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECTTSCEEEECCCCCCCCC--CCCCCCCCGGGCCHHHHHHHHTTCSSCCBHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEECCCeEEEecCccccccC--CcceeccCCCChhHHHHHHHHhccCCCceeHhhhcCc
Confidence 4455555433 5566666554332221111000011 1233 67777877655554211 111112111
Q ss_pred EecCCCHHHHHHHH-HCCCCeEE-eCCCCHHHHHHHHHHHHHHh
Q 004001 168 MSSLDSMGLVFKCL-SKGAVDFL-VKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 168 LSa~~~~e~~~~al-~aGAddyL-~KP~~~eeL~~~L~~llrr~ 209 (780)
+|.. ....+...+ .+|.+... .|.++.+++...+..+..-.
T Consensus 262 ft~~-g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~k 304 (530)
T 2zbk_B 262 FQSI-GDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKDE 304 (530)
T ss_dssp STTC-CHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHCC
T ss_pred cccc-cHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhcc
Confidence 1111 122222222 35665555 57899999999998887653
No 152
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.32 E-value=8.7 Score=41.36 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNC---GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~---GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~ 160 (780)
...+++.|+|.|....+.|...|... .|+|..+.+.+.+.+.+++ ..+||+|+|- +.... ..+ .
T Consensus 19 ~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~~~-----~~~-----~ 86 (373)
T 3fkq_A 19 GMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNIDK-----SEF-----K 86 (373)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCCCG-----GGG-----C
T ss_pred CceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhhhh-----hhh-----c
Confidence 35689999999999999999999743 6899999999999999987 6899999998 65421 111 2
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
...+|++++.....+ ...-...+.|--..++|...|..++
T Consensus 87 ~~~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 87 RNCGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp SSCEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 335667776643221 1112246889889999887776665
No 153
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=80.51 E-value=16 Score=40.32 Aligned_cols=101 Identities=14% Similarity=0.245 Sum_probs=68.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCHH
Q 004001 87 SLKVLLVE----NDDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGV 148 (780)
Q Consensus 87 ~lrVLIVD----DD~~~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------------~mdGl 148 (780)
+..++++| ......+.++.+-+.++..|. .+.+.++|..+++. ..|.|++-.-| +...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 45677775 233445556555444577766 58898888877763 57888873111 12346
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 149 eLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.++..+.+......+|||.--+-.+...+.+++.+||+.+..
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 667777543223469999988888899999999999998875
No 154
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=79.44 E-value=14 Score=36.49 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=59.6
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHH
Q 004001 111 GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCL 181 (780)
Q Consensus 111 GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al 181 (780)
+..+. .+.+.+++.+... ...|.|+++. .+. .-++++++.+++. ..+|||+..+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHH
Confidence 55443 6778888877665 3579999876 432 2367888888643 26899888777 788889999
Q ss_pred HCCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 004001 182 SKGAVDFLV-----KPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 182 ~aGAddyL~-----KP~~~eeL~~~L~~llrr 208 (780)
++|++.+.. +.-++.+....+...+++
T Consensus 183 ~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~ 214 (221)
T 1yad_A 183 QAGADGIAVMSGIFSSAEPLEAARRYSRKLKE 214 (221)
T ss_dssp HTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHH
Confidence 999998764 333444444444444443
No 155
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=78.25 E-value=6.4 Score=40.64 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=49.1
Q ss_pred CCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHH
Q 004001 132 NHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLS 182 (780)
Q Consensus 132 ~~pDLVLlDi-M--P~mdG--------------------leLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~ 182 (780)
...|+|.+++ . |-.|| ++++++||+. .+++||++|+-... ...+..+.+
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~ 120 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSRE 120 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHH
Confidence 4578888887 4 33333 4557777653 34789999854431 345677889
Q ss_pred CCCCeEEeCCCCHHHHHHHHHHH
Q 004001 183 KGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 183 aGAddyL~KP~~~eeL~~~L~~l 205 (780)
+|+++++.-.+..+++...+..+
T Consensus 121 aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 121 KGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp TTCCEEECTTCCHHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHHH
Confidence 99999999888887766655443
No 156
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=78.07 E-value=1 Score=39.93 Aligned_cols=36 Identities=6% Similarity=-0.067 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccC-CcceeeEEEEE
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIA-EDVKDGCEGAV 59 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G-~GS~fg~~~~~ 59 (780)
.-+++|++++++.|||.+.+.+..+ .|.+|.+.+|+
T Consensus 91 GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~ 127 (129)
T 3zxo_A 91 GSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPL 127 (129)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEES
T ss_pred CcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecC
Confidence 3458999999999999999999998 88887777664
No 157
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=77.93 E-value=24 Score=38.40 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=68.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCH
Q 004001 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSG 147 (780)
Q Consensus 87 ~lrVLIVD----DD~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------------~mdG 147 (780)
+..+++|| +.+...+.++.+-+.. +..|+ .+.+.++|..+++. ..|.|.+.+-| +...
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~gpGs~~~tr~~~g~g~p~ 196 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 196 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecCCCCCCCcccccCcccch
Confidence 45677775 3445555666665555 66655 58899999888764 57888883212 1234
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++++..+++......+|||..-+-.+...+.+++.+||+.+..
T Consensus 197 ~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 197 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5666666532112469999888888889999999999998865
No 158
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=77.31 E-value=19 Score=33.73 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=72.8
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDD-STRHVVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~-~~r~~L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
..++++|+.+.+ .....+..+++..+ .|.. . -+.++..+++. ..|++|+-...+.-|+-+++.+. .
T Consensus 69 ~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~e~~~~~~~Ea~a-----~ 138 (200)
T 2bfw_A 69 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYFEPFGLVALEAMC-----L 138 (200)
T ss_dssp GGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSCCSSCHHHHHHHH-----T
T ss_pred CCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCCCCccHHHHHHHH-----C
Confidence 356888887644 25667788888777 4544 3 34557677775 36888875533444677888873 3
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+|||+. .. ....+.+ .|-.+++..|-+.++|...|..++.
T Consensus 139 G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 4676654 22 2334555 7788999999999999999999876
No 159
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=76.92 E-value=1.2 Score=43.27 Aligned_cols=35 Identities=9% Similarity=-0.123 Sum_probs=28.8
Q ss_pred CCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 24 ~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
.-+++||+++++.+||.|.+.+.+ |++|.+.+|+.
T Consensus 182 GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 182 GHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp -CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 345899999999999999999988 88887777753
No 160
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=76.13 E-value=23 Score=37.05 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CC--CCCHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 99 TRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MP--CLSGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP--~mdGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
....|....+.+|..+. .+.+.+|+...+. ..+|+|=+.. +- ..| ++.+.+|... ...++|+|.-++-..
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~---~ga~iIGinnr~l~t~~~d-l~~~~~L~~~-ip~~~~vIaesGI~t 231 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALK---LSSRLLGVNNRNLRSFEVN-LAVSERLAKM-APSDRLLVGESGIFT 231 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTT---SCCSEEEEECBCTTTCCBC-THHHHHHHHH-SCTTSEEEEESSCCS
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh---cCCCEEEECCCCCccCCCC-hHHHHHHHHh-CCCCCcEEEECCCCC
Confidence 34445555667899866 7888888866664 4678886653 22 122 4555555432 224689999999999
Q ss_pred HHHHHHHHHCCCCeEEe-----CCCCHHHH
Q 004001 174 MGLVFKCLSKGAVDFLV-----KPIRKNEL 198 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~-----KP~~~eeL 198 (780)
.+++.+++++|++.||+ |+-++.+.
T Consensus 232 ~edv~~l~~~Ga~gvLVG~almr~~d~~~~ 261 (272)
T 3tsm_A 232 HEDCLRLEKSGIGTFLIGESLMRQHDVAAA 261 (272)
T ss_dssp HHHHHHHHTTTCCEEEECHHHHTSSCHHHH
T ss_pred HHHHHHHHHcCCCEEEEcHHHcCCcCHHHH
Confidence 99999999999999986 56555543
No 161
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=75.77 E-value=17 Score=37.23 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=60.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCe
Q 004001 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVD 187 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-------mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAdd 187 (780)
.+.+.+|+.+..+ ..+|.|.+.. .|. .-|++.+++++.. ....+|||++.+- ..+.+.+++.+||+.
T Consensus 141 S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~-~~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 141 STHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAEL-GGDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred eCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHh-ccCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 6789999877665 3589999865 443 2378888888643 1147999999887 567788999999999
Q ss_pred EEe-----CCCCHHHHHHHHHHHHH
Q 004001 188 FLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 188 yL~-----KP~~~eeL~~~L~~llr 207 (780)
+.+ +.-++.+....+...++
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~~~ 240 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSALT 240 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 875 55556555555554443
No 162
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=75.01 E-value=17 Score=35.40 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=69.0
Q ss_pred EEEEEeCCH--HHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEcc-CC----CCCHHHHHHHHHhh
Q 004001 89 KVLLVENDD--STRHVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVLTEV-MP----CLSGVALLSKIMSH 157 (780)
Q Consensus 89 rVLIVDDD~--~~r~~L~~lL~~~GyeV~~A----~dg~eALe~L~~~~~~pDLVLlDi-MP----~mdGleLl~~IRs~ 157 (780)
..+++-+.+ .....+...+++.|..+... .+..+.++.+.+ ...|+|.++. .. ...+++.+++|++.
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~ 156 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAGRKPIDDLITMLKV 156 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTTCCSHHHHHHHHHH
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccCCCCHHHHHHHHHH
Confidence 344444433 34455666677778877642 344344444444 3467777653 11 12367888888754
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
.+++||++-.+-. .+.+.+++++||+.++. +.-++.+....+...++
T Consensus 157 --~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 157 --RRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp --CSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred --cCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 2468887766554 77888999999999864 55566655555555444
No 163
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=74.34 E-value=0.69 Score=47.97 Aligned_cols=37 Identities=8% Similarity=-0.154 Sum_probs=28.0
Q ss_pred CCCCCCcHHHHHHH-HhCCcEEeccccCCcceeeEEEEE
Q 004001 22 SKRDENAVVGEQQH-LVGDDRLNDSSIAEDVKDGCEGAV 59 (780)
Q Consensus 22 ~~~~~~AIvr~LV~-lmGG~I~v~S~~G~GS~fg~~~~~ 59 (780)
+..-+++||+++++ .+||.+.+.+..+ |++|.+.+|+
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~ 344 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 344 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEES
T ss_pred CccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecC
Confidence 45667999999999 8999999988754 7777666653
No 164
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=72.64 E-value=5.9 Score=41.39 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
++++++||+. ..++||++|+-+.. ...+.+|.++|++++|.-.+.+++....+..+
T Consensus 83 ~~~v~~ir~~--~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQ--HPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHH--CTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhc--CCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 4566666543 25789999976432 55678899999999999877777755544443
No 165
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=72.51 E-value=1.1 Score=40.68 Aligned_cols=36 Identities=8% Similarity=-0.142 Sum_probs=27.3
Q ss_pred CCCCCCcHHHHHHH-HhCCcEEeccccCCcceeeEEEE
Q 004001 22 SKRDENAVVGEQQH-LVGDDRLNDSSIAEDVKDGCEGA 58 (780)
Q Consensus 22 ~~~~~~AIvr~LV~-lmGG~I~v~S~~G~GS~fg~~~~ 58 (780)
+..-+++||+++++ .+||.+.+.+..+ |++|.+.+|
T Consensus 110 g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP 146 (152)
T 3a0y_A 110 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIP 146 (152)
T ss_dssp CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEE
T ss_pred CCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeC
Confidence 34556899999999 9999999988754 666555544
No 166
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=71.23 E-value=21 Score=32.45 Aligned_cols=94 Identities=9% Similarity=0.147 Sum_probs=54.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCC-CHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCL-SGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~m-dGleLl~~IRs~~~~~~i 163 (780)
.+..|++||.++...+.+ +..|+.++... .-.+.|+.+.- ...|+||+-+ |.. .-..++..+|.. .+.+
T Consensus 29 ~g~~v~vid~~~~~~~~~----~~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~-~~~~~n~~~~~~a~~~--~~~~ 99 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDEL----RERGVRAVLGNAANEEIMQLAHL--ECAKWLILTI-PNGYEAGEIVASARAK--NPDI 99 (140)
T ss_dssp TTCCEEEEESCHHHHHHH----HHTTCEEEESCTTSHHHHHHTTG--GGCSEEEECC-SCHHHHHHHHHHHHHH--CSSS
T ss_pred CCCCEEEEECCHHHHHHH----HHcCCCEEECCCCCHHHHHhcCc--ccCCEEEEEC-CChHHHHHHHHHHHHH--CCCC
Confidence 356788888887765443 34677765432 22334443322 3578887654 322 233455555543 4667
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+||+... +.+....+.++|++..+.
T Consensus 100 ~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 100 EIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred eEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 7776664 345666777899987764
No 167
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=71.18 E-value=2 Score=44.80 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=36.6
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHhcCCCceEEEEcc
Q 004001 88 LKVLLVEND--DSTRHVVAALLRNCGYEVTEATNGLQ--AWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD--~~~r~~L~~lL~~~GyeV~~A~dg~e--ALe~L~~~~~~pDLVLlDi 141 (780)
.+||||+++ +.....|..+|+..||+|.......- -.+.|. .||+||++.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d 58 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSD 58 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEES
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcC
Confidence 489999988 66778899999999999987654322 123443 589998874
No 168
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=70.73 E-value=20 Score=37.48 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=81.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
..+.|.++-.++.....+..+|...-|.+..+.+.++.++.+++....+|++|+.. .+..-..++..|.+.. --+|+
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~-~~~~~~~~~~~L~~~g--~lLP~ 84 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVA-ANPSFRAVVQQLCFEG--VVVPA 84 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEET-TSTTHHHHHHHHHHTT--CCCCE
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEe-CCCccHHHHHHHHHcC--ccccE
Confidence 35678888899999999999998788999999999999999988777899998764 1234577888886654 45899
Q ss_pred EEEecCCCHHHHH---HHHHCCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 004001 166 IMMSSLDSMGLVF---KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 166 IvLSa~~~~e~~~---~al~aGAddyL~KP~~~eeL~~~L~~llrr~ 209 (780)
|++-......... .++ ....+.-...-..++|-..|.+++.+.
T Consensus 85 vil~~~~~~~~~~~~~~~~-yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 85 IVVGDRDSEDPDEPAKEQL-YHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEESCCC------CCSSCS-SBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEeccCccccCCCCcccee-ccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 9886642200000 011 111222233345566777777766654
No 169
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=70.00 E-value=9.2 Score=38.44 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCC------HHHHHHHHHCCCCeEEeCCCCHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDS------MGLVFKCLSKGAVDFLVKPIRKNELKN 200 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~------~e~~~~al~aGAddyL~KP~~~eeL~~ 200 (780)
++++++||+. .++||++++.... .+.+..++++||+.++.-.+..+++..
T Consensus 69 ~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~ 124 (248)
T 1geq_A 69 FWIVKEFRRH---SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124 (248)
T ss_dssp HHHHHHHHTT---CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHH
T ss_pred HHHHHHHHhh---CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHH
Confidence 6778888653 3579998874332 467888999999999986555555433
No 170
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=68.75 E-value=20 Score=36.95 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-C---CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC
Q 004001 111 GYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-P---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK 183 (780)
Q Consensus 111 GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-M-P---~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a 183 (780)
|+.+. .+.+.+++....+. ..|+|+.=. . . +..+.+++++|++. .++|||+..+-.+.+.+.+++++
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 77665 45566666555443 356553301 1 1 23357889999763 47999999888888999999999
Q ss_pred CCCeEEe
Q 004001 184 GAVDFLV 190 (780)
Q Consensus 184 GAddyL~ 190 (780)
||+.+++
T Consensus 200 GAdgViV 206 (264)
T 1xm3_A 200 GADGVLL 206 (264)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999975
No 171
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=68.72 E-value=5.7 Score=41.10 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=48.7
Q ss_pred CCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCccEEEEecCC------CHHHHHHHHH
Q 004001 132 NHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLD------SMGLVFKCLS 182 (780)
Q Consensus 132 ~~pDLVLlDi-M--P~mdG--------------------leLl~~IRs~~~~~~iPIIvLSa~~------~~e~~~~al~ 182 (780)
...|+|-+++ . |-+|| +++++.||+. ..++||++|+-.. ....+..+.+
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~ 120 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREK--HPTIPIGLLMYANLVFNNGIDAFYARCEQ 120 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSSSCEEEEECHHHHHTTCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCEEEEEcccHHHHhhHHHHHHHHHH
Confidence 4578888887 4 43444 3557777653 2468999886322 1466778999
Q ss_pred CCCCeEEeCCCCHHHHHHHHHHH
Q 004001 183 KGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 183 aGAddyL~KP~~~eeL~~~L~~l 205 (780)
+|++.++.-.+..+++...+..+
T Consensus 121 aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 121 VGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HTCCEEEETTCCGGGCHHHHHHH
T ss_pred cCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999877777665555443
No 172
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=67.31 E-value=32 Score=30.55 Aligned_cols=118 Identities=11% Similarity=0.162 Sum_probs=69.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH-HHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-ALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGl-eLl~~IRs~~~~~~iPI 165 (780)
+-|++..-|......++.++++.||.|.++.+..+.-+.+++.-..|..-|+-+ ..+..-. ..++.+++. ...+-|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvksl--gaqvli 80 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSL--GAQVLI 80 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHH--CCCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhc--CCeEEE
Confidence 346666788888889999999999999999999998777765433444222222 2222211 233444333 233444
Q ss_pred EEEecCCC---HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHHhc
Q 004001 166 IMMSSLDS---MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 166 IvLSa~~~---~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr~~ 210 (780)
|+.- .+. .+...+..+.|+.--- -.+++++...+.++++...
T Consensus 81 iiyd-qdqnrleefsrevrrrgfevrt--vtspddfkkslerlirevg 125 (134)
T 2l69_A 81 IIYD-QDQNRLEEFSREVRRRGFEVRT--VTSPDDFKKSLERLIREVG 125 (134)
T ss_dssp EEEC-SCHHHHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHHHHHHC
T ss_pred EEEe-CchhHHHHHHHHHHhcCceEEE--ecChHHHHHHHHHHHHHhc
Confidence 4432 221 1222334456653221 2367888888888887653
No 173
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=67.28 E-value=56 Score=32.05 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEc----------c-CC----CCCHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTE----------V-MP----CLSGVALL 151 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlD----------i-MP----~mdGleLl 151 (780)
.+|+++-..+.+...+..++...+.++. ...+.++++...++....+|+||.- + .| ..+|++++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil 84 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTM 84 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHH
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHH
Confidence 5788888889988888888887777765 5667888888766532468888852 1 23 45788888
Q ss_pred HHHHhhcCCCCccEEEEecCC---CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 152 SKIMSHKTRKNLPVIMMSSLD---SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 152 ~~IRs~~~~~~iPIIvLSa~~---~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+.|..-.... -+|-+++-.. ........+.....-|. ..+.+++...|..+.+
T Consensus 85 ~al~~a~~~~-~kIavvg~~~~~~~~~~~~~ll~~~i~~~~--~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 85 RAVYNAKRFG-NELALIAYKHSIVDKHEIEAMLGVKIKEFL--FSSEDEITTLISKVKT 140 (196)
T ss_dssp HHHHHHGGGC-SEEEEEEESSCSSCHHHHHHHHTCEEEEEE--ECSGGGHHHHHHHHHH
T ss_pred HHHHHHHhhC-CcEEEEeCcchhhHHHHHHHHhCCceEEEE--eCCHHHHHHHHHHHHH
Confidence 8776433222 2344443322 23334444544333332 3456677777776644
No 174
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=67.23 E-value=61 Score=36.68 Aligned_cols=101 Identities=13% Similarity=0.238 Sum_probs=65.9
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCH
Q 004001 87 SLKVLLVEN----DDSTRHVVAALLRNCG-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSG 147 (780)
Q Consensus 87 ~lrVLIVDD----D~~~r~~L~~lL~~~G-yeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------mdG 147 (780)
+..+++|+. ...+.+.++.+-+.++ ..|+ .+.+.++|..+++. ..|.|++..-++ ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 456777763 3344556666655553 4444 57788888777764 478887643111 223
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.++..+++......+|||+--+-.....+.+++.+||+..+.
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 5555554322212359999988888999999999999999876
No 175
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=66.99 E-value=20 Score=38.06 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=68.3
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 87 SLKVLLVEND---DSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 87 ~lrVLIVDDD---~~~r~~L~~lL~~~Gy--eV~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
.++++|+.+. ......+..++++.|. .|.... +.++..+++.. .|++|+-...+.-|+-+++.+.
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~e~~~~~~~Eama---- 347 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSFNESFGLVAMEAQA---- 347 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCSCCSSCHHHHHHHH----
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECccccCCchHHHHHHH----
Confidence 4677777661 1334556666666653 344433 33667777765 5777764333344677787773
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+. ... ...+.+..|..+++..|.+.++|..+|..++.
T Consensus 348 -~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 348 -SGTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp -TTCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred -cCCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 35787764 332 23455667788999999999999999998875
No 176
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=66.88 E-value=34 Score=34.08 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=60.3
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCC--CceEEEEcc-CCCCC-------HHHHHHHHHhhcCCCCccEEEEe
Q 004001 103 VAALLRNCGYEVTE-A--TNGLQAWKILEDLTN--HIDLVLTEV-MPCLS-------GVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 103 L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~--~pDLVLlDi-MP~md-------GleLl~~IRs~~~~~~iPIIvLS 169 (780)
+.+.++..|..+.. + .+..+.++.+.. . ..|.|+++. .|+.. +++.+++||+.. +++||++.-
T Consensus 105 ~~~~i~~~g~~igv~~~p~t~~e~~~~~~~--~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~G 180 (228)
T 1h1y_A 105 LIQSIKAKGMRPGVSLRPGTPVEEVFPLVE--AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDG 180 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGGHHHHH--SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEES
T ss_pred HHHHHHHcCCCEEEEEeCCCCHHHHHHHHh--cCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEEC
Confidence 34444556776653 3 233455555443 2 578999987 77633 356677776542 367877665
Q ss_pred cCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 170 SLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 170 a~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
+-. .+.+.+++++|+|.++. +--++.+-...++..++
T Consensus 181 GI~-~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~ 222 (228)
T 1h1y_A 181 GLG-PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVE 222 (228)
T ss_dssp SCS-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred CcC-HHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Confidence 544 46777888999999875 33355555555554444
No 177
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=66.21 E-value=6.7 Score=41.45 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=48.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP-~mdGleLl~~IR 155 (780)
-++.+||-++.....|+..++...--.+...|+.++|..+......+||||+|- -- ..+.-.+++.|.
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~ 183 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIK 183 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHH
Confidence 489999999999999998887643333356788888887754334699999996 33 223445555554
No 178
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=66.20 E-value=44 Score=35.18 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 103 L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-------mdGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
+...|+..|..|. .+.+.+++..... ...|.|+++- -++ ...++++.++++. .++|||+-.+-.+
T Consensus 110 ~~~~l~~~gi~vi~~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~ 183 (328)
T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAER---LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFAD 183 (328)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCS
T ss_pred HHHHHHHcCCCEEeeCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCC
Confidence 3445566687766 5788888877665 3578888864 321 2467888888643 3689998888878
Q ss_pred HHHHHHHHHCCCCeEEe
Q 004001 174 MGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~ 190 (780)
.+.+.+++.+||+.+..
T Consensus 184 ~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 184 GRGLVAALALGADAINM 200 (328)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88999999999998875
No 179
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=66.13 E-value=16 Score=38.14 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=62.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++|+.+.+. ..+..+++...-.|.. .-+..+..+++.. .|++|+-. -.+.-|+-+++.+. ..+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a-----~G~ 308 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA-----AGT 308 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH-----HTC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH-----cCC
Confidence 345566655544 3444444332111221 2233444555544 46666543 23334667777773 246
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|||+. .. ....+.+..|..+|+..|-+.++|..+|..++.
T Consensus 309 PvI~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 309 AVVAS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EEEEC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEe-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 76643 22 445677788889999999999999999998875
No 180
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=65.80 E-value=30 Score=33.99 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=54.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CC--------CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCC
Q 004001 116 EATNGLQAWKILEDLTNHIDLVLTEV-MP--------CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi-MP--------~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAd 186 (780)
.+.+..++..... ..+|.|++.. .| ...++++++++++.. +++||++..+-. .+.+.+++++|++
T Consensus 122 s~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~ 195 (227)
T 2tps_A 122 SAHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGAD 195 (227)
T ss_dssp EECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCS
T ss_pred ecCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 3578878665554 3578888632 22 123788888886532 248988877665 6677788899999
Q ss_pred eEEe-----CCCCHHHHHHHHHHHHH
Q 004001 187 DFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 187 dyL~-----KP~~~eeL~~~L~~llr 207 (780)
.+.. +.-++.+....+...++
T Consensus 196 gv~vgs~i~~~~d~~~~~~~~~~~~~ 221 (227)
T 2tps_A 196 GVSMISAISQAEDPESAARKFREEIQ 221 (227)
T ss_dssp EEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred EEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 8854 34455344444444343
No 181
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=65.57 E-value=31 Score=32.19 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=68.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLR--NC----GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~--~~----GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~ 159 (780)
..++++|+.+.+.. ..+..++. .. .+.+.-.-+.++..+++.. .|++|+=...+.-|+.+++.+.
T Consensus 49 ~~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~~e~~~~~~~Eama---- 119 (177)
T 2f9f_A 49 QDEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAKDEDFGLTPIEAMA---- 119 (177)
T ss_dssp TTSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCSSCCSCHHHHHHHH----
T ss_pred CCcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCcCCCChHHHHHHH----
Confidence 45678888754432 23444444 22 2333334455667777765 5777763333334677888773
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
..+|||+. .. ....+.+..|..+++. +.+.++|..+|..++..
T Consensus 120 -~G~PvI~~-~~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 120 -SGKPVIAV-NE---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp -TTCCEEEE-SS---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred -cCCcEEEe-CC---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 35787764 22 3455666778889999 99999999999998853
No 182
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.07 E-value=16 Score=34.81 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=37.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRN--CGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~--~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
.+.+||+||-|+.. .+..++.. .++.+..+.. ....+.+......||+||+|.-|.. +......+
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~~~~-~~~~~~~l 95 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGAGSL-SVITSAAV 95 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECCSSS-SHHHHHHH
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECCCCC-CHHHHHHH
Confidence 56789999988643 23344432 3567766544 3333444433357999999984444 33334444
No 183
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=63.56 E-value=53 Score=34.74 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=60.2
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-C-CC----CCHHHHHHHHHhhcCCCCccEEEEecCCCHH
Q 004001 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-M-PC----LSGVALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (780)
Q Consensus 103 L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-M-P~----mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e 175 (780)
+...|+..|..|. .+.+.++|....+ ..+|.|+++- - .+ ...++++..+++. .++|||+..+-.+.+
T Consensus 116 ~~~~l~~~g~~v~~~v~s~~~a~~a~~---~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~ 189 (326)
T 3bo9_A 116 YIRELKENGTKVIPVVASDSLARMVER---AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGR 189 (326)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHH
T ss_pred HHHHHHHcCCcEEEEcCCHHHHHHHHH---cCCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHH
Confidence 3445566787776 5788888776654 3578888864 2 22 3467888888643 268999888888899
Q ss_pred HHHHHHHCCCCeEEe
Q 004001 176 LVFKCLSKGAVDFLV 190 (780)
Q Consensus 176 ~~~~al~aGAddyL~ 190 (780)
.+.+++.+||+.+..
T Consensus 190 dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 190 GMAAAFALGAEAVQM 204 (326)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHhCCCEEEe
Confidence 999999999999875
No 184
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=63.20 E-value=25 Score=34.96 Aligned_cols=88 Identities=11% Similarity=0.189 Sum_probs=59.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEE---EECCH---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 91 LLVENDDSTRHVVAALLRNCGYEVT---EATNG---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 91 LIVDDD~~~r~~L~~lL~~~GyeV~---~A~dg---~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
-||.-... +....++.|..++ ..-|. +.+++.+.+ ..||+| .+||+.- .++++++++. ..+|
T Consensus 85 GIIsTk~~----~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~--~~PD~i--EiLPGi~-p~iI~~i~~~---~~~P 152 (192)
T 3kts_A 85 GIISTRGN----AIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQK--VQPDCI--ELLPGII-PEQVQKMTQK---LHIP 152 (192)
T ss_dssp EEEESCHH----HHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHH--HCCSEE--EEECTTC-HHHHHHHHHH---HCCC
T ss_pred EEEeCcHH----HHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhh--cCCCEE--EECCchh-HHHHHHHHHh---cCCC
Confidence 34554433 3444566787544 22232 346777776 678977 4488865 3788999764 3689
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
||+=---.+.+.+..|+++||+..-+
T Consensus 153 iIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 153 VIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp EEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred EEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 98877778899999999999987754
No 185
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=62.98 E-value=78 Score=34.02 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=66.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCH
Q 004001 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSG 147 (780)
Q Consensus 87 ~lrVLIVD----DD~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------mdG 147 (780)
+..++.++ +.....+.|+.+-+.+ +..|. .+.+.++|..+++. -.|.|++-.-++ ..-
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIGPGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTBCHHHHHCBCCCH
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCcCccccCCCCccH
Confidence 34567676 3344556666655555 56554 57888998877763 578886643222 223
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE-eCCC
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL-VKPI 193 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL-~KP~ 193 (780)
+.++..+.+......+|||+-.+-.+...+.+++.+||+... -+||
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 444444432211135899988888899999999999999864 4565
No 186
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=62.17 E-value=54 Score=35.43 Aligned_cols=100 Identities=15% Similarity=0.251 Sum_probs=64.9
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCHHH
Q 004001 88 LKVLLVE----NDDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSGVA 149 (780)
Q Consensus 88 lrVLIVD----DD~~~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------mdGle 149 (780)
..+++|+ +...+.+.++.+-+..+..|. .+.+.++|..+++ ...|.|.+-.-|+ ...++
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~---aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~ 194 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQIT 194 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH---TTCSEEEECSSCCTTCCHHHHTCBCCCHHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH---cCcCEEEEecCCCcCCCcccccCCCCCcHH
Confidence 4466664 333455666666565677666 5788888877765 3578888732111 23455
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++..+++......+|||.--+-.+.+.+.+++.+||+.+..
T Consensus 195 ~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 195 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55555432111358999888877889999999999998865
No 187
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=62.14 E-value=60 Score=35.27 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=62.5
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCC------------CH
Q 004001 87 SLKVLLVEN----DDSTRHVVAALLRNC-GYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCL------------SG 147 (780)
Q Consensus 87 ~lrVLIVDD----D~~~r~~L~~lL~~~-GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDiMP~m------------dG 147 (780)
+..++.||- ...+.+.+..+-+.+ +..|.. +.+.++|..+++. ..|.|++..-|+. ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g~G~~~~tr~~~g~g~p~ 188 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIGGGSVCSTRIKTGFGVPM 188 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCSSSSCHHHHHHHCCCCCH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCCCCcCccccccCCccHHH
Confidence 456888872 233344444443333 566664 7899998887763 5898887543332 23
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++++..+... .. |||+--+-.+...+.+++.+||+.+..
T Consensus 189 l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 189 LTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4444444221 12 898888888899999999999988765
No 188
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=62.01 E-value=38 Score=32.99 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC-CccEEEEecCCCHHHHHHHHH
Q 004001 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK-NLPVIMMSSLDSMGLVFKCLS 182 (780)
Q Consensus 105 ~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~-~iPIIvLSa~~~~e~~~~al~ 182 (780)
...+.+|..+. .+.+..++++.+. ..+|+|++-.- ...|++.+++|++. .+ ++||++..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~---~G~d~v~v~~t-~~~g~~~~~~l~~~--~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE---AGAQALKIFPS-SAFGPQYIKALKAV--LPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH---TTCSEEEETTH-HHHCHHHHHHHHTT--SCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH---CCCCEEEEecC-CCCCHHHHHHHHHh--ccCCCeEEEeCCCC-HHHHHHHHH
Confidence 45566777644 5788888876654 35788886220 12367888888643 23 58998887776 677888999
Q ss_pred CCCCeEEeC-CC-CH----HHHHHHHHHHHH
Q 004001 183 KGAVDFLVK-PI-RK----NELKNLWQHVWR 207 (780)
Q Consensus 183 aGAddyL~K-P~-~~----eeL~~~L~~llr 207 (780)
+||+.++.= -+ .. +.+...++.+.+
T Consensus 168 ~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~ 198 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAGQSVERTAQQAAAFVK 198 (212)
T ss_dssp HTCSEEEECTTTCCTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCCCCHHHHHHHHHHHHH
Confidence 999998743 22 21 455555555443
No 189
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=61.91 E-value=29 Score=34.49 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=49.2
Q ss_pred CCccEEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004001 85 LRSLKVLLVE------NDDSTRHVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (780)
Q Consensus 85 ~~~lrVLIVD------DD~~~r~~L~~lL~~~GyeV~~A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~I 154 (780)
..+.+|++|+ |.......+...|++.|+++... .+.++..+.+.+ .|.|++ |+.+-+.+++.|
T Consensus 25 ~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l---~GG~~~~l~~~L 97 (206)
T 3l4e_A 25 LQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV---TGGNTFFLLQEL 97 (206)
T ss_dssp CTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE---CCSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE---CCCCHHHHHHHH
Confidence 3456899997 44457778899999999998877 477887787875 577774 777777777777
Q ss_pred Hh
Q 004001 155 MS 156 (780)
Q Consensus 155 Rs 156 (780)
++
T Consensus 98 ~~ 99 (206)
T 3l4e_A 98 KR 99 (206)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 190
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=61.60 E-value=1e+02 Score=32.00 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=65.6
Q ss_pred EEEEeC--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCCC-HHHHHHHHHhhcCCCCc
Q 004001 90 VLLVEN--DDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS-GVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDD--D~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~md-GleLl~~IRs~~~~~~i 163 (780)
||||-. ++.....|..+-..+|.++. .+.+.+|+-..+.. ..+||=+.- +-... -++...+|... ...++
T Consensus 130 ILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vdl~~t~~L~~~-ip~~~ 205 (258)
T 4a29_A 130 VLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEINKENQRKLISM-IPSNV 205 (258)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBCHHHHHHHHTT-SCTTS
T ss_pred eehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccCHHHHHHHHhh-CCCCC
Confidence 555432 23334556666678898765 89999997777763 567776653 43322 25555666432 23456
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.+|.-|+-...+++.++..+|++.||+-
T Consensus 206 ~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 206 VKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred EEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 6777788899999999999999999974
No 191
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=61.53 E-value=30 Score=34.65 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCce-EEEEcc-CCCCC---------HHHHHHHHHhhcCCCCccE
Q 004001 100 RHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHID-LVLTEV-MPCLS---------GVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~---dg~eALe~L~~~~~~pD-LVLlDi-MP~md---------GleLl~~IRs~~~~~~iPI 165 (780)
...+...+++.|..+...- +..+.++.+... .| +|.+ + .++.. .++.+++|++.. ++||
T Consensus 122 ~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~---~~pi 194 (248)
T 1geq_A 122 AKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKV 194 (248)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHC---SSCE
T ss_pred HHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhc---CCCE
Confidence 3456666677787766332 456666666542 33 5544 3 44432 356777776542 6898
Q ss_pred EEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 166 IMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 166 IvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
++-.+-...+.+.+++.+||+.++.=
T Consensus 195 ~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 195 AVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 88777777688889999999999863
No 192
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=61.40 E-value=55 Score=34.23 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=71.6
Q ss_pred CccEEEEEeCCHH-HHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDDS-TRHVVAALLRNCGYEVT-EAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~-~r~~L~~lL~~~GyeV~-~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
..++++|+.+.+. ....+..+.+..+ .++ ... +.++..+++.. .|++|+-..-+.-|+-+++.+. .
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~e~~~~~~~EAma-----~ 353 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYFEPFGLVALEAMC-----L 353 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSCCSSCHHHHHHHH-----T
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCCCCccHHHHHHHH-----C
Confidence 3567778876543 3466777777777 444 333 55666666643 6777765533445677888773 3
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+|||+ |.. ....+.+..| .+++..|.+.++|..+|..++.
T Consensus 354 G~Pvi~-s~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 354 GAIPIA-SAV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp TCEEEE-ESS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCeEE-cCC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 578775 332 2344555567 8999999999999999999887
No 193
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=61.23 E-value=17 Score=38.87 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=65.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYE----------VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye----------V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.++++||-+.+.....|..++++.|+. |.......+...++.. .|++++-- .-+.-|.-+++.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccCCCCcCHHHHH-
Confidence 567888888776555677777777754 3333323444555543 68877643 3222344566666
Q ss_pred hhcCCCCccEEEEecCCC-HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDS-MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~-~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
...+|||+-+.... .+.+......| ++..+-+.++|..+|..++..
T Consensus 300 ----A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 ----CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp ----TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred ----HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 24688885222222 33333333444 566677999999999999863
No 194
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=61.14 E-value=10 Score=39.61 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=46.0
Q ss_pred ceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCccEEEEecCC------CHHHHHHHHHCC
Q 004001 134 IDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIMMSSLD------SMGLVFKCLSKG 184 (780)
Q Consensus 134 pDLVLlDi-M--P~mdG--------------------leLl~~IRs~~~~~~iPIIvLSa~~------~~e~~~~al~aG 184 (780)
.|+|.+++ . |-.|| ++++++||+. .++|||+|+-.. ....+..|.++|
T Consensus 43 aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG 119 (271)
T 1ujp_A 43 ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAG 119 (271)
T ss_dssp CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHHHHhhHHHHHHHHHHcC
Confidence 89999887 4 32333 4667777654 468999985322 234566789999
Q ss_pred CCeEEeCCCCHHHHHHHHHHH
Q 004001 185 AVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 185 AddyL~KP~~~eeL~~~L~~l 205 (780)
++++|.--+..+++...+..+
T Consensus 120 ~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 120 ATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp CCEEECTTCCGGGCHHHHHHH
T ss_pred CCEEEecCCCHHHHHHHHHHH
Confidence 999999877777666555444
No 195
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=60.95 E-value=26 Score=36.08 Aligned_cols=106 Identities=17% Similarity=0.291 Sum_probs=68.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.++++|+.+.+. ..+..+++..+. .|......++..+++.. .|++|+-...+.-|.-+++.+. ..+|
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~e~~~~~~~Ea~a-----~G~P 296 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQEAAGIVLLEAIT-----AGLP 296 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSCCSSCHHHHHHHH-----HTCC
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccccCCcccHHHHHHH-----CCCC
Confidence 457788876542 456666665553 45555544556666654 5777764433444677888773 2478
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeC-CCCHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVK-PIRKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~K-P~~~eeL~~~L~~llr 207 (780)
||+....... +.+..|..+++.. |.+.++|...|..++.
T Consensus 297 vi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 297 VLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 8765433322 3445566789997 9999999999999875
No 196
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=60.67 E-value=17 Score=41.96 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=66.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHh
Q 004001 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMS 156 (780)
Q Consensus 87 ~lrVLIV----DDD~~~r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP~-md-GleLl~~IRs 156 (780)
..+|||. |-+..-..++..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-. |.. +. -.++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4478877 667777888999999999999843 457788888877 6799999887 532 22 2346777765
Q ss_pred hcCCCCccEEEEecCCCHHHHHHHH---HCCCCeEEe
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVFKCL---SKGAVDFLV 190 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~~al---~aGAddyL~ 190 (780)
. ..++||++--.....+.....+ -.||+.|..
T Consensus 176 ~--g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 176 Q--GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp T--TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred c--CCCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 4 3478887665555544332111 128877754
No 197
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=59.61 E-value=49 Score=33.01 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCce-EEEEcc-CCC-CC--HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe-----
Q 004001 121 LQAWKILEDLTNHID-LVLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV----- 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pD-LVLlDi-MP~-md--GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~----- 190 (780)
.+.++.+.+ ..++ +++.+. -.+ .. .++++++|++. ..+|||+..+-...+.+.++++.|+++++.
T Consensus 155 ~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~ 229 (252)
T 1ka9_F 155 VEWAVKGVE--LGAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFH 229 (252)
T ss_dssp HHHHHHHHH--HTCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHH--cCCCEEEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHH
Confidence 444454544 2355 455554 221 12 38899999754 368999998888888999999999999875
Q ss_pred -CCCCHHHHHHHH
Q 004001 191 -KPIRKNELKNLW 202 (780)
Q Consensus 191 -KP~~~eeL~~~L 202 (780)
.|+++.++...+
T Consensus 230 ~~~~~~~~~~~~l 242 (252)
T 1ka9_F 230 FGEIPIPKLKRYL 242 (252)
T ss_dssp TTSSCHHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 467887776654
No 198
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=58.93 E-value=78 Score=33.91 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=56.5
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC----C------------CCHHHHHHHHHhhcCCCCccEEEE
Q 004001 107 LRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP----C------------LSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 107 L~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP----~------------mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
|+..|..|. .+.+.++|..... ..+|.|+++- .. + ...++++++|++. .++|||+.
T Consensus 141 ~~~~g~~v~~~v~t~~~a~~a~~---~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaa 214 (369)
T 3bw2_A 141 LRRAGTLTLVTATTPEEARAVEA---AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAA 214 (369)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHCCCeEEEECCCHHHHHHHHH---cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEE
Confidence 344677665 6788888776654 3589898853 21 1 2348888888753 36899988
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-.+.+.+.+++..||+.+..
T Consensus 215 GGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 215 GGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8877889999999999988765
No 199
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.84 E-value=23 Score=31.46 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=24.3
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh
Q 004001 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILED 129 (780)
Q Consensus 91 LIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~ 129 (780)
|+-|.|..-.+.+.+-++..||+|.-+.+.++||..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 444555555566666666667777766676776666553
No 200
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=58.65 E-value=78 Score=34.41 Aligned_cols=91 Identities=11% Similarity=0.197 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCHHHHHHHHHhhcCCC
Q 004001 97 DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 97 ~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------------~mdGleLl~~IRs~~~~~ 161 (780)
....+.+..+-+.. +..|. .+.+.++|..+.+ ..+|.|++-.-+ +...++++..+++.....
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34555555554555 66666 4677777766554 458888882111 122355666665422224
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+|||+..+-.+...+.+++.+||+.+..
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999988888899999999999998875
No 201
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=58.62 E-value=1.1e+02 Score=34.34 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=67.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCH
Q 004001 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSG 147 (780)
Q Consensus 87 ~lrVLIVD----DD~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------------~mdG 147 (780)
+..+++|| ......+.++.+-+.+ +..|. .+.+.++|..+++ ...|.|++-+-| +...
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~---aGaD~I~vg~g~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE---AGADAVKVGIGPGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHTCBCCCH
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH---cCCCEEEECCCCCcCCCccccCCCCccH
Confidence 35577776 3445556666666665 55554 3678888877765 357888873211 1234
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++++..+.+.-....+|||.-.+-.....+.+++.+||+..+.
T Consensus 318 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 5666666543222469999988888899999999999998875
No 202
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=58.03 E-value=48 Score=35.79 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=70.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDD-STRHVVAALLRNCGYEVT-EAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~-~~r~~L~~lL~~~GyeV~-~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++||.+.+ .....|..+....+-.|. ... ..++..+++.. .|++|+=...+.-|+-+++.+. ..+
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~E~~~~~~lEAma-----~G~ 390 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRFEPCGLTQLYALR-----YGC 390 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSCCSSCSHHHHHHH-----HTC
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcccCCCCHHHHHHHH-----CCC
Confidence 56778887654 356677777776653443 233 33333466654 5777764433344667777774 247
Q ss_pred cEEEEecCCCHHHHHHHHHCC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKG---------AVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aG---------AddyL~KP~~~eeL~~~L~~llr 207 (780)
|||+. .. ....+.+..| ..+||..|-+.++|..+|..++.
T Consensus 391 PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 391 IPVVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred CEEEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 87763 32 3445666666 78999999999999999999873
No 203
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=57.76 E-value=5.7 Score=41.68 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=49.0
Q ss_pred CccEEEEEeC-----CHHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHH
Q 004001 86 RSLKVLLVEN-----DDSTRHVVAALLRNCG-YEVTEATNGL-----QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDD-----D~~~r~~L~~lL~~~G-yeV~~A~dg~-----eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~ 153 (780)
+.+|||||.- -+....+|..+|++.| |+|.++.+.. +.+. ..-..+|+||++. +...+-. ..+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~-~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEE-TNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHH-HHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHH-HHHH
Confidence 4679999976 2566789999999998 9999887641 2221 1124699999887 6554432 2222
Q ss_pred HHhhcCCCCccEEEEec
Q 004001 154 IMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa 170 (780)
|.+. ......+|++=+
T Consensus 79 l~~y-V~~Ggglv~~H~ 94 (281)
T 4e5v_A 79 FLEY-VQNGGGVVIYHA 94 (281)
T ss_dssp HHHH-HHTTCEEEEEGG
T ss_pred HHHH-HHcCCCEEEEec
Confidence 2211 112456777743
No 204
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=57.70 E-value=24 Score=35.46 Aligned_cols=100 Identities=11% Similarity=0.146 Sum_probs=64.9
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-C----CC-CCHHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-M----PC-LSGVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-M----P~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
.+...|+..||.+.. +..+...+..+.. -+||.|=+|. + .. .....+++.|........+. |+..+-.+
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~-viaeGVEt 219 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE-VVAEGVEN 219 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCE-EEECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCe-EEEEeCCC
Confidence 344567788998874 5566678888887 6799999995 2 11 12334555553322123344 45677778
Q ss_pred HHHHHHHHHCCCCeE----EeCCCCHHHHHHHHHH
Q 004001 174 MGLVFKCLSKGAVDF----LVKPIRKNELKNLWQH 204 (780)
Q Consensus 174 ~e~~~~al~aGAddy----L~KP~~~eeL~~~L~~ 204 (780)
.+....+.+.|++-+ +.||...+++...+..
T Consensus 220 ~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 220 AEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 888888889997643 6799999999877654
No 205
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=57.70 E-value=98 Score=32.31 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHHHHHhCCC-EEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 103 VAALLRNCGY-EVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 103 L~~lL~~~Gy-eV~--~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
|+..|+. |. .+- .-.+..+.++.+.. ..+|.||+|+ -...+--.+...++.... ...++++=+...+...+.
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv~~~d~~di~ 105 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEECSSSCHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHH
Confidence 5555654 44 333 23344555666665 6799999998 333344444454543322 356677767777788889
Q ss_pred HHHHCCCCeEEe-CCCCHHHHHHHHHH
Q 004001 179 KCLSKGAVDFLV-KPIRKNELKNLWQH 204 (780)
Q Consensus 179 ~al~aGAddyL~-KP~~~eeL~~~L~~ 204 (780)
.+++.|++.++. |--+.+++..++..
T Consensus 106 ~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 999999987654 44567886655443
No 206
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=57.23 E-value=18 Score=37.36 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=51.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEccC-----CCC-CHHHHHHHHHhhcCCCCccEEE-EecCCCHHHHHHHHHCCCCeEEeC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVM-----PCL-SGVALLSKIMSHKTRKNLPVIM-MSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiM-----P~m-dGleLl~~IRs~~~~~~iPIIv-LSa~~~~e~~~~al~aGAddyL~K 191 (780)
+..+.++.+.+ ...|.+-+|+| |.+ -|.++++.||+. .+++|+.+ |--..-...+..+.++||+.+..-
T Consensus 41 ~L~~~i~~l~~--~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~--~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLA--AGADNIHFDVMDNHYVPNLTFGPMVLKALRDY--GITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHH--TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHH--TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHH--cCCCEEEEEecCCCcCcchhcCHHHHHHHHHh--CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 34677777766 34566666653 444 388999999865 34566554 323333557788889999877776
Q ss_pred CCCHHHHHHHHHHH
Q 004001 192 PIRKNELKNLWQHV 205 (780)
Q Consensus 192 P~~~eeL~~~L~~l 205 (780)
......+.+.++.+
T Consensus 117 ~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 117 PEASEHIDRSLQLI 130 (246)
T ss_dssp GGGCSCHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 54444555555444
No 207
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=56.83 E-value=68 Score=31.94 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCceE-EEEcc-CCC-CC--HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe----
Q 004001 120 GLQAWKILEDLTNHIDL-VLTEV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV---- 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDL-VLlDi-MP~-md--GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~---- 190 (780)
..+.++.+.+ ..++. ++++. -.+ .. .++++++|++. ..+|||+..+-...+.+.++++.|++.++.
T Consensus 153 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal 227 (253)
T 1thf_D 153 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHH
Confidence 4555555554 34664 44554 211 12 38899999753 368999998888888999999999999875
Q ss_pred --CCCCHHHHHHHH
Q 004001 191 --KPIRKNELKNLW 202 (780)
Q Consensus 191 --KP~~~eeL~~~L 202 (780)
.|+++.++...+
T Consensus 228 ~~~~~~~~~~~~~l 241 (253)
T 1thf_D 228 HFREIDVRELKEYL 241 (253)
T ss_dssp HTTCSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 356766665554
No 208
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=56.74 E-value=37 Score=37.05 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=65.6
Q ss_pred HHHHHHHHHhCCCE--EEEEC--CHHHHHHHHHhcCCCc----eEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYE--VTEAT--NGLQAWKILEDLTNHI----DLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~Gye--V~~A~--dg~eALe~L~~~~~~p----DLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...|..++++.|.. |.... +.++..+++.. . |++|+=...+.-|+-+++.+. ..+|||+.. .
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~Eg~~~~~lEAma-----~G~PvI~s~-~ 390 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFYEPFGLAPVEAMA-----SGLPAVVTR-N 390 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSCBCCCSHHHHHHH-----TTCCEEEES-S
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcccCCCCcHHHHHHH-----cCCCEEEec-C
Confidence 67788888877652 55433 35777777765 5 888764433344667788773 357887543 2
Q ss_pred CCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 172 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 172 ~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
....+.+..|..+++..|-+.++|..+|..++.
T Consensus 391 ---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 391 ---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp ---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred ---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 234566677788999999999999999988863
No 209
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=56.65 E-value=65 Score=34.04 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHH
Q 004001 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 105 ~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP-----~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~ 177 (780)
..++..|+.|. .+.+.++|..+.+ ..+|.|+++- -. ....++++++|++. .++|||+..+-.+.+.+
T Consensus 104 ~~l~~~g~~v~~~v~~~~~a~~~~~---~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~ 177 (332)
T 2z6i_A 104 ERFHEAGIIVIPVVPSVALAKRMEK---IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGA 177 (332)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHH
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHH
Confidence 34455688766 5777777655544 3578888863 21 13457888888753 36899988888889999
Q ss_pred HHHHHCCCCeEEe
Q 004001 178 FKCLSKGAVDFLV 190 (780)
Q Consensus 178 ~~al~aGAddyL~ 190 (780)
.+++..||+.+..
T Consensus 178 ~~al~~GAdgV~v 190 (332)
T 2z6i_A 178 AAGFMLGAEAVQV 190 (332)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEe
Confidence 9999999998764
No 210
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=55.52 E-value=46 Score=35.96 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=66.5
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 87 SLKVLLVENDD-STRHVVAALLRNCGYEVT-EAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 87 ~lrVLIVDDD~-~~r~~L~~lL~~~GyeV~-~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
.++++||.+.+ .....|..+....+-.|. ... ..++..+++.. .|++|+=...+.-|+-+++.+. ..+
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~E~~g~~~lEAma-----~G~ 391 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSRFEPCGLTQLYGLK-----YGT 391 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCSCCSSCSHHHHHHH-----HTC
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCcHHHHHHHH-----CCC
Confidence 45666666543 355666666666553343 222 33333455554 5666654333344666777773 246
Q ss_pred cEEEEecCCCHHHHHHHHHCC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKG---------AVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aG---------AddyL~KP~~~eeL~~~L~~llr 207 (780)
|||+. .. ....+.+..| ..+||..|-+.++|..+|..++.
T Consensus 392 PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 392 LPLVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred CEEEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 77754 22 3445666676 78999999999999999999873
No 211
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=55.39 E-value=64 Score=34.08 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=59.9
Q ss_pred cCCccEEEEEeCCHHHH-HHHHHHHHhCCCEEEE-EC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 84 HLRSLKVLLVENDDSTR-HVVAALLRNCGYEVTE-AT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r-~~L~~lL~~~GyeV~~-A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
+|+.+||.||.--..-+ ..+..+...-+++++. +. +.+.+-+..+. ..+..+ .|+ +.+-. .
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~g~~~~-~~~----------~~ll~---~ 87 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER--FGGEPV-EGY----------PALLE---R 87 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH--HCSEEE-ESH----------HHHHT---C
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH--cCCCCc-CCH----------HHHhc---C
Confidence 45678999999877666 3455444444788763 33 44444444443 122222 332 22211 1
Q ss_pred CCccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 161 ~~iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+++-+|+++.. .-.+.+..|+++|..=|+-||+ +.+++.+++..+
T Consensus 88 ~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a 136 (350)
T 3rc1_A 88 DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVA 136 (350)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 23444444433 3356678899999999999997 566766666554
No 212
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=55.36 E-value=67 Score=33.02 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=53.0
Q ss_pred cEEEEE-eCCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDDST---RHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~~~---r~~L~~lL~~~GyeV~~---A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.|| +|+..- .+.+...|++.|+.+.. + .+....+..+.. ..+|+||+.. .+.+...+++.+++
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~-~~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD--AKPDAMFVFV-PAGQGGNFMKQFAE 216 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH--HCCSEEEEEC-CTTCHHHHHHHHHH
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh--cCCCEEEEec-cchHHHHHHHHHHH
Confidence 356555 444433 45677778888987652 2 356677777776 5689999854 33478889999976
Q ss_pred hcCCCC-ccEEEEecCCCHH
Q 004001 157 HKTRKN-LPVIMMSSLDSMG 175 (780)
Q Consensus 157 ~~~~~~-iPIIvLSa~~~~e 175 (780)
...... +|||......+..
T Consensus 217 ~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 217 RGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp TTGGGTTCEEEEETTTTCHH
T ss_pred cCCCcCCceEEecCcccCHH
Confidence 543333 6666544334443
No 213
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=55.34 E-value=38 Score=30.65 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=68.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc-
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATN--GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL- 163 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~d--g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i- 163 (780)
.++++|+.+.+. ...+..++...+..|.. .- .++..+++. ..|++|+-...+.-|+-+++.+. ..+
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~----~adv~v~ps~~e~~~~~~~Eama-----~G~v 100 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILK----TCTLYVHAANVESEAIACLEAIS-----VGIV 100 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHT----TCSEEEECCCSCCCCHHHHHHHH-----TTCC
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHH----hCCEEEECCcccCccHHHHHHHh-----cCCC
Confidence 568888887654 46777888888876665 33 456666664 36888875443445677888873 344
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
|||..+...... +.+..+ .++..|-+.++|...|..++.
T Consensus 101 Pvi~~~~~~~~~---~~~~~~--~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 101 PVIANSPLSATR---QFALDE--RSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EEEECCTTCGGG---GGCSSG--GGEECTTCHHHHHHHHHHHHH
T ss_pred cEEeeCCCCchh---hhccCC--ceEEcCCCHHHHHHHHHHHHh
Confidence 887733222221 122222 347889999999999999875
No 214
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=54.89 E-value=49 Score=32.90 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEccCCCC----CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC---CCCeEEe
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEVMPCL----SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK---GAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDiMP~m----dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a---GAddyL~ 190 (780)
+..+.++.+.+ ..+| |++++.-++. -.++++++|++. ..+|||+..+-...+.+.+++++ ||+.++.
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 45565555555 3466 4556642211 247889999753 36999999888888999999999 9999875
Q ss_pred ------CCCCHHHHHHHH
Q 004001 191 ------KPIRKNELKNLW 202 (780)
Q Consensus 191 ------KP~~~eeL~~~L 202 (780)
.|+.+.++...+
T Consensus 222 G~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 222 GKALYAKAFTLEEALEAT 239 (244)
T ss_dssp CHHHHTTSSCHHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHHh
Confidence 577776666554
No 215
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=54.77 E-value=68 Score=31.34 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=56.7
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C----CCC--C--HHHHHHHHHhhcCCCCccEEE
Q 004001 100 RHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M----PCL--S--GVALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 100 r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--M----P~m--d--GleLl~~IRs~~~~~~iPIIv 167 (780)
.+.+..+-+.+ |..+. .+.+.+++.+... ...|+|.+-. . .+. . +++++++|++. -.+|||+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia 180 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIA 180 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEE
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHH---cCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEE
Confidence 44444444433 66554 5677888776554 3468775432 1 111 2 35678888653 2689998
Q ss_pred EecCCCHHHHHHHHHCCCCeEEeC
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~K 191 (780)
..+-.+.+.+.+++++||+.++.=
T Consensus 181 ~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 181 EGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 888878999999999999998763
No 216
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=54.38 E-value=27 Score=38.40 Aligned_cols=95 Identities=11% Similarity=0.155 Sum_probs=58.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~d-g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
.+..|+|||.|+...+.+ +..|+.++..+- -.+.|+.+.- ...|+||+-+-.+..-+.++..+|+. .++++
T Consensus 26 ~g~~vvvId~d~~~v~~~----~~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~~~~n~~i~~~ar~~--~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQTNLQLTEMVKEH--FPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHH----HHTTCCCEESCTTCHHHHHHTTT--TTCSEEEECCSSHHHHHHHHHHHHHH--CTTCE
T ss_pred CCCCEEEEECCHHHHHHH----HhCCCeEEEcCCCCHHHHHhcCC--CccCEEEECCCChHHHHHHHHHHHHh--CCCCe
Confidence 456799999988765544 356777654321 2334444422 45788887541122235556666543 47778
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
||+.+.. ........++||+.++.
T Consensus 98 Iiara~~--~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARARD--VDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEESS--HHHHHHHHHTTCSSCEE
T ss_pred EEEEECC--HHHHHHHHHCCCCEEEC
Confidence 8777653 56677788999998775
No 217
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=53.62 E-value=16 Score=38.84 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=56.9
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 90 VLLVENDDSTR----HVVAALLRNCG-Y-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDDD~~~r----~~L~~lL~~~G-y-eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
|||-|++-... ..++.+-+... . ..+.+.+.+|+.+.+.. ..|+|++|-|+-.+--++++.++ ..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~~~l~~av~~~~-----~~- 251 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSISEIKKAVDIVN-----GK- 251 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCHHHHHHHHHHHT-----TS-
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHhhc-----Cc-
Confidence 67666654333 33333322222 2 34479999999999974 58999999843322223333332 22
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.+|..|+.-..+.+....+.|+|.+-
T Consensus 252 v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 252 SVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp SEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 46778888888888888999986543
No 218
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=53.31 E-value=1.4e+02 Score=30.65 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=59.2
Q ss_pred HHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 103 VAALLRNCGY---EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 103 L~~lL~~~Gy---eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
|+..|+. |. .+...-...+.++.+.. ..+|.||+|+ -.-.+--++...++.... ...++++=+...+...+.
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECSSCCHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHH
Confidence 5555554 43 23333344555666655 5799999998 322344444454543322 245666666666788888
Q ss_pred HHHHCCCCeEEe-CCCCHHHHHHHHHH
Q 004001 179 KCLSKGAVDFLV-KPIRKNELKNLWQH 204 (780)
Q Consensus 179 ~al~aGAddyL~-KP~~~eeL~~~L~~ 204 (780)
.+++.|++.++. |--+.+++..++..
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 999999987544 44577886655444
No 219
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=52.70 E-value=67 Score=31.52 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhcCCCceEEEE-ccCC-C---CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe---
Q 004001 119 NGLQAWKILEDLTNHIDLVLT-EVMP-C---LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV--- 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLl-DiMP-~---mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~--- 190 (780)
+..+.++.+.+ ...|.|++ ..-+ + .-.++++++|++. ..+|||+..+-...+.+.+++++||+.++.
T Consensus 155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsa 229 (253)
T 1h5y_A 155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASL 229 (253)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHH
Confidence 34454555544 34666654 3322 1 1146788888754 368999888887778888999999999874
Q ss_pred ---CCCCHHHHHHHH
Q 004001 191 ---KPIRKNELKNLW 202 (780)
Q Consensus 191 ---KP~~~eeL~~~L 202 (780)
.+....++...+
T Consensus 230 l~~~~~~~~~~~~~l 244 (253)
T 1h5y_A 230 FHFRVLSIAQVKRYL 244 (253)
T ss_dssp HHTTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 455666655554
No 220
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=51.86 E-value=56 Score=29.37 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=47.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc--CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDL--TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~--~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
..++|.||-| +.+... ++-.|+++..+.+.+++.+.+++. ...+.|||+.- +-. .--+.+.+++. ...
T Consensus 2 ~~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~---~~~ 72 (109)
T 2d00_A 2 VPVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMR---GRD 72 (109)
T ss_dssp CCCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTT---CCC
T ss_pred CccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHh---CCC
Confidence 4568999998 444333 344689998888888776655432 24788999886 433 23345566642 234
Q ss_pred ccEEEEec
Q 004001 163 LPVIMMSS 170 (780)
Q Consensus 163 iPIIvLSa 170 (780)
.|+|+.-.
T Consensus 73 ~P~Il~IP 80 (109)
T 2d00_A 73 LPVLLPIA 80 (109)
T ss_dssp CCEEEEES
T ss_pred CeEEEEEC
Confidence 67766544
No 221
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=51.64 E-value=84 Score=28.92 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=47.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++...+..+..+...++ .+. ...+..+.+..+......||+|++|. .-.....++++.|.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~ 139 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML 139 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHH
Confidence 4799999999999999988887765 243 56677766554432135799999996 33344556666663
No 222
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=51.54 E-value=27 Score=36.07 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEccCC-------CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVMP-------CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiMP-------~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
+.++..+++.. .|++|+-... +.-|+-+++.+. ..+|||+ +.... ..+.+..| .+++..
T Consensus 262 ~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-----~G~PvI~-~~~~~---~~e~i~~~-~g~~~~ 327 (394)
T 3okp_A 262 EYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-----CGVPVIA-GTSGG---APETVTPA-TGLVVE 327 (394)
T ss_dssp CHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH-----TTCCEEE-CSSTT---GGGGCCTT-TEEECC
T ss_pred CHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH-----cCCCEEE-eCCCC---hHHHHhcC-CceEeC
Confidence 33566666654 5777764322 445677777773 3478876 33322 23445667 899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 004001 192 PIRKNELKNLWQHVWR 207 (780)
Q Consensus 192 P~~~eeL~~~L~~llr 207 (780)
|-+.++|..+|..++.
T Consensus 328 ~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 328 GSDVDKLSELLIELLD 343 (394)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998864
No 223
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=51.53 E-value=23 Score=36.11 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEccCCC---------CCHHHHHHHHHhhcCCCCccEEEE
Q 004001 101 HVVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEVMPC---------LSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~~pDLVLlDiMP~---------mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
..+...+++.|+.++. + .+..+.++.+..... ++|++...++ ...+++++++++. .++||++-
T Consensus 133 ~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~--g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~---~~~pI~vg 207 (262)
T 1rd5_A 133 HSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASE--GFVYLVSVNGVTGPRANVNPRVESLIQEVKKV---TNKPVAVG 207 (262)
T ss_dssp HHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCC--SCEEEECSSCCBCTTSCBCTHHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCC--CeEEEecCCCCCCCCcCCCchHHHHHHHHHhh---cCCeEEEE
Confidence 3444556677876442 2 233445444443222 3343322222 1245678888754 36899988
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-.+.+.+.+++.+||+.++.
T Consensus 208 GGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 208 FGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCcCCHHHHHHHHHcCCCEEEE
Confidence 8888799999999999999975
No 224
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=51.27 E-value=43 Score=33.76 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCccEEEEec
Q 004001 102 VVAALLRNCGYEVTEATN---GLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~A~d---g~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~~~~~iPIIvLSa 170 (780)
.+...+++.|..+..+-+ ..+.++.+. ..+|+|++.. -|+..| ++-+++||+. ..+++| .+.+
T Consensus 103 ~~i~~i~~~G~k~gval~p~t~~e~l~~~l---~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~--~~~~~I-~VdG 176 (228)
T 3ovp_A 103 ALIKDIRENGMKVGLAIKPGTSVEYLAPWA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ--FPSLDI-EVDG 176 (228)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCGGGTGGGG---GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH--CTTCEE-EEES
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHh---ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh--cCCCCE-EEeC
Confidence 344455777887664433 233333332 2478888876 787765 4446667653 245555 4555
Q ss_pred CCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 171 LDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
--..+.+..+.++||+.++. +--++.+-...|+..+.
T Consensus 177 GI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~ 218 (228)
T 3ovp_A 177 GVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS 218 (228)
T ss_dssp SCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 55678888999999998865 43355554444444443
No 225
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=51.11 E-value=82 Score=32.39 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHhcCCCceEEEE---------cc-C--C-------CCCH-------
Q 004001 99 TRHVVAALLRNCGYEVTE-----ATNGLQAWKILEDLTNHIDLVLT---------EV-M--P-------CLSG------- 147 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~-----A~dg~eALe~L~~~~~~pDLVLl---------Di-M--P-------~mdG------- 147 (780)
..++++.+-+..++-|.. +.+..+..+.+.+ ...|.|++ +. - | +..|
T Consensus 152 ~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~--~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~ 229 (311)
T 1ep3_A 152 AAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVA 229 (311)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH--TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH--cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHH
Confidence 344555444444654432 2345665666665 45787776 22 1 1 0112
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEE------eCCCCHHHHHHHHHHHHHHh
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFL------VKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL------~KP~~~eeL~~~L~~llrr~ 209 (780)
++++++|++. .++|||+.-+-.+.+.+.+++.+||+.+. ..|.-..++..-+..++...
T Consensus 230 ~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~~ 294 (311)
T 1ep3_A 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQY 294 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 4777788643 37999988888889999999999998764 35666666766666666543
No 226
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=50.53 E-value=56 Score=33.52 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=55.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEccCCCCCH---------HHHHHHHHhh
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVT-EAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSG---------VALLSKIMSH 157 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~-~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdG---------leLl~~IRs~ 157 (780)
|++.|-.......+...+++.|..+. .+. +..+-++.+......+ |++..+.+..| .+++++||+.
T Consensus 126 ii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~--v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~ 203 (268)
T 1qop_A 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGY--TYLLSRSGVTGAENRGALPLHHLIEKLKEY 203 (268)
T ss_dssp EEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSC--EEEESSSSCCCSSSCC--CCHHHHHHHHHT
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCc--EEEEecCCcCCCccCCCchHHHHHHHHHhc
Confidence 33333333334556666777777644 222 2233333333322223 44433223222 5788888764
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.++||++=.+-...+.+.+++.+|||.+++
T Consensus 204 ---~~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 204 ---HAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp ---TCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ---cCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 268887766666688899999999999986
No 227
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=50.23 E-value=94 Score=31.92 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=59.7
Q ss_pred HHHHHHhCCCEE--EEEC-CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHH
Q 004001 103 VAALLRNCGYEV--TEAT-NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 103 L~~lL~~~GyeV--~~A~-dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
|+..|..-...+ .... +..+.++.+.. ..+|.||+|+ -.-.+--.+...|+.... ..+++++=....+..++.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEhav~~~~k~~~~l~a~~~-~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEHAAYTFREINHLVSVAKN-AGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSSSCCCHHHHHHHHHHHHH-HTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccCCCCCHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHH
Confidence 455565432222 2222 34556677665 5799999998 444444445555543221 234444444555667889
Q ss_pred HHHHCCCCeEEe-CCCCHHHHHHHHHHH
Q 004001 179 KCLSKGAVDFLV-KPIRKNELKNLWQHV 205 (780)
Q Consensus 179 ~al~aGAddyL~-KP~~~eeL~~~L~~l 205 (780)
.+++.|++.++. |--+.+++..++..+
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 999999988654 455778887766654
No 228
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=49.66 E-value=3.4 Score=37.60 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=33.8
Q ss_pred CCChhhhHHHHHHHhhhh-----CCCCCCCcHHHHHHHHhCCcEEeccccCCcceeeEEEEEE
Q 004001 3 VDGKADKRLQELNHCLQA-----GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT 60 (780)
Q Consensus 3 ~~g~g~~r~~~L~~~l~~-----~~~~~~~AIvr~LV~lmGG~I~v~S~~G~GS~fg~~~~~~ 60 (780)
|+|.|+....+++..+.. .+...+++|++++++ .+.+.+..+.|++|.+.+|+.
T Consensus 81 D~G~g~~~~~~~~~~~~~~~~~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~ 139 (145)
T 1th8_A 81 DEGVGIPDIEEARQPLFTTKPELERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGI 139 (145)
T ss_dssp ECSSCCSCHHHHTCCC-------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC
T ss_pred ECCCCcChHHHhhcccccCCCCCCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecc
Confidence 678877622233222211 334455889988877 889999988877776666543
No 229
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=49.46 E-value=71 Score=31.78 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-CCCCCH---HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEV-MPCLSG---VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDi-MP~mdG---leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+.++.+.+. ..| |.+.|. ...... ++++++|++. ..+|||+.....+.+.+.+++..||+.++.
T Consensus 32 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDEA--GADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHHH--TCSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHc--CCCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 555555555542 244 455676 433322 4556777542 479999999988999999999999998876
No 230
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=49.35 E-value=1.6e+02 Score=33.14 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=65.7
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCH
Q 004001 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSG 147 (780)
Q Consensus 87 ~lrVLIVD----DD~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------------~mdG 147 (780)
+..+++|+ +.....+.++.+-+.. +..|. .+.+.++|..+++. ..|.|++..-| +..-
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~ 319 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 319 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccH
Confidence 34577776 3445556666666665 44443 46788888777664 57888874211 1223
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+.++..+.+......+|||.-.+-.....+.+++.+||+..+.
T Consensus 320 ~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 320 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 4555555432112358999988888899999999999998875
No 231
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=48.69 E-value=24 Score=34.51 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCccEEEE
Q 004001 102 VVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMM 168 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~--~~~~iPIIvL 168 (780)
.+.+.++..|..+.. + .+..++++.+. ...|.|+++. .|+.+| ++.+++||+.. ....+||++.
T Consensus 100 ~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~ 176 (220)
T 2fli_A 100 GALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVD 176 (220)
T ss_dssp HHHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344555556776553 3 23344444332 3478898876 665554 24455555422 1125676654
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHH
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQ 203 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~ 203 (780)
-+- ..+.+.+++++|++.++. +..++.+-...|.
T Consensus 177 GGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~ 215 (220)
T 2fli_A 177 GGV-DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215 (220)
T ss_dssp SSC-CTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred CcC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 444 466777788999998864 4455555444443
No 232
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=48.68 E-value=35 Score=33.87 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCceEE-EEcc-CCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC---CCCeEEe-
Q 004001 120 GLQAWKILEDLTNHIDLV-LTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK---GAVDFLV- 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLV-LlDi-MP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a---GAddyL~- 190 (780)
..+.++.+.. ..++.| +++. ..+. -.++++++|++. ..+|||+..+-...+.+.+++++ ||+.++.
T Consensus 151 ~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG 225 (244)
T 2y88_A 151 LWDVLERLDS--EGCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVG 225 (244)
T ss_dssp HHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred HHHHHHHHHh--CCCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEc
Confidence 3555566655 346644 5554 3221 247888888643 47999999888888899999998 9998865
Q ss_pred -----CCCCHHHHHHH
Q 004001 191 -----KPIRKNELKNL 201 (780)
Q Consensus 191 -----KP~~~eeL~~~ 201 (780)
.|+.+.++...
T Consensus 226 ~al~~~~~~~~~~~~~ 241 (244)
T 2y88_A 226 KALYARRFTLPQALAA 241 (244)
T ss_dssp HHHHTTSSCHHHHHHH
T ss_pred HHHHCCCcCHHHHHHH
Confidence 47776666554
No 233
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=48.60 E-value=59 Score=32.70 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCceEEEE-cc-CCC-CC--HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe----
Q 004001 120 GLQAWKILEDLTNHIDLVLT-EV-MPC-LS--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV---- 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLl-Di-MP~-md--GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~---- 190 (780)
..+.++.+.. ..++.|++ +. -.+ .. .++++++|++. ..+|||+..+-.+.+.+.++++.||++++.
T Consensus 158 ~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal 232 (266)
T 2w6r_A 158 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 232 (266)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTTCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTT
T ss_pred HHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHH
Confidence 3455555554 34565554 43 111 12 37889999653 378999999998888999999999999875
Q ss_pred --CCCCHHHHHHH
Q 004001 191 --KPIRKNELKNL 201 (780)
Q Consensus 191 --KP~~~eeL~~~ 201 (780)
.|+.+.++...
T Consensus 233 ~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 233 HFREIDMRELKEY 245 (266)
T ss_dssp C------------
T ss_pred HcCCCCHHHHHHH
Confidence 34454444443
No 234
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=48.52 E-value=1.2e+02 Score=33.90 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC---------------CCHHHHHHHHHhhcC
Q 004001 98 STRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC---------------LSGVALLSKIMSHKT 159 (780)
Q Consensus 98 ~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~---------------mdGleLl~~IRs~~~ 159 (780)
...+.++.+-+.. ++.|. .+.+.++|..+.+. ..|.|.+-.-|+ ...+.++.+++..
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~-- 356 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR-- 356 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG--
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh--
Confidence 3445555555555 56655 36777777766654 467776632121 2235666666543
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEe-CCC
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV-KPI 193 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~-KP~ 193 (780)
..+|||+..+-.+...+.+++.+||+.... .+|
T Consensus 357 -~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 357 -FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp -GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred -CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 369999988888889999999999988754 444
No 235
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=48.46 E-value=10 Score=36.99 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=34.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004001 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 90 VLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
|||||........+..+|++.|+++..+...+..++.+.. ..+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 9999977776678889999999988876654322333432 25788877
No 236
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=47.82 E-value=76 Score=31.34 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEE---EEccCCC-----CCHHHHHHHHHhhcCCCCccEEEE
Q 004001 99 TRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLV---LTEVMPC-----LSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 99 ~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLV---LlDiMP~-----mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
..+.+..+-+.. +..|. .+.+.+++...+. ...|+| ++.+.++ ...++++++++.. ++||++.
T Consensus 120 ~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~---~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~----~ipvia~ 192 (234)
T 1yxy_A 120 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQ---AGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA----GIAVIAE 192 (234)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC----CCCEEEE
Confidence 344444444433 56555 5677888777665 357887 2222222 1246788888642 6899988
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
.+-.+.+.+.+++++||+.++.
T Consensus 193 GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 193 GKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp SCCCSHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
Confidence 8888899999999999999865
No 237
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=47.77 E-value=2.6e+02 Score=29.44 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=65.3
Q ss_pred EEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC--H
Q 004001 89 KVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS--G 147 (780)
Q Consensus 89 rVLIVD----DD~~~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------md--G 147 (780)
.++.++ +.....+.++.+-+.+ +.-|. .+.+.++|..+++. -.|.|++-.-++ .. .
T Consensus 122 ~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~hgG~~~~~~~~~~~g~~g~~ 198 (336)
T 1ypf_A 122 EYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 198 (336)
T ss_dssp SEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCHHHHHHSCSSTTCH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecCCCceeecccccCcCCchhH
Confidence 445554 4455667777766665 45444 36788888777764 478887732121 11 3
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++++.+++.. .++|||+-.+-.+..++.+++.+||+....
T Consensus 199 ~~~l~~v~~~---~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 199 LAALRWCAKA---ASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp HHHHHHHHHT---CSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 6677777543 279999988888899999999999998764
No 238
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=47.66 E-value=65 Score=30.25 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=50.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhh-cCCCC
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSH-KTRKN 162 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gy-eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~--mdGleLl~~IRs~-~~~~~ 162 (780)
+|.-||-++...+..+..+...+. .+. ...+..+.+..+.. ..||+|++|. ... .+-.++++.+... -..+.
T Consensus 69 ~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 69 SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGTNGWTREG 146 (189)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHhcCccCCC
Confidence 799999999999999998888775 343 56676665543322 5799999996 433 2234566666541 22344
Q ss_pred ccEEEEe
Q 004001 163 LPVIMMS 169 (780)
Q Consensus 163 iPIIvLS 169 (780)
-.+|+-+
T Consensus 147 G~l~~~~ 153 (189)
T 3p9n_A 147 TVAVVER 153 (189)
T ss_dssp CEEEEEE
T ss_pred eEEEEEe
Confidence 4444443
No 239
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=47.40 E-value=34 Score=35.61 Aligned_cols=100 Identities=9% Similarity=0.159 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc--CCCC--C--HHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 102 VVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV--MPCL--S--GVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 102 ~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi--MP~m--d--GleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
.....|+..|+.+. -+..|-..+..|.. -+||.|=+|- .-++ + ...+++.|-.....-.+. |+.-+-.+
T Consensus 167 ~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~-vvAEGVEt 243 (294)
T 2r6o_A 167 TCLDALRARGVRLALDDFGTGYSSLSYLSQ--LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGME-VVAEGIET 243 (294)
T ss_dssp HHHHHHHHHTCEEEEEEETSSCBCHHHHHH--SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCE-EEECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCE-EEEecCCc
Confidence 34455677798766 56777777888877 6799999995 3332 2 234455443222122343 45667777
Q ss_pred HHHHHHHHHCCCCe----EEeCCCCHHHHHHHHHH
Q 004001 174 MGLVFKCLSKGAVD----FLVKPIRKNELKNLWQH 204 (780)
Q Consensus 174 ~e~~~~al~aGAdd----yL~KP~~~eeL~~~L~~ 204 (780)
.+....+.+.|++. |+.||...+++...+.+
T Consensus 244 ~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 244 AQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp HHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 88888888999864 47899999998876654
No 240
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=47.20 E-value=51 Score=34.63 Aligned_cols=93 Identities=18% Similarity=0.116 Sum_probs=57.6
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 89 KVLLVENDDSTR----HVVAALLRNCGY---EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 89 rVLIVDDD~~~r----~~L~~lL~~~Gy---eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
-+||.||+..+. ..+...-+..+. -.+.+.+.+++.+.+.. ..|+|++|-|.. +.++++.+.- ..
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~----~~~k~av~~v-~~ 239 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPL----EALREAVRRV-GG 239 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCH----HHHHHHHHHH-TT
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHHh-CC
Confidence 378888876543 233333333443 23378899999988864 479999997421 2222322111 13
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+||++ ++--..+.+....+.|+|.+-+
T Consensus 240 ~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 240 RVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 577665 5666788899999999876643
No 241
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=47.13 E-value=86 Score=30.96 Aligned_cols=94 Identities=5% Similarity=-0.057 Sum_probs=65.0
Q ss_pred HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCC
Q 004001 108 RNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA 185 (780)
Q Consensus 108 ~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGA 185 (780)
+..|..+. -+.+..|+.+.++. ..|.|-+ . -+..-|++.++.|+.. .+++||+.+-+-. .+.+.+++.+|+
T Consensus 101 ~~~g~~~i~G~~t~~e~~~A~~~---Gad~v~~-fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI~-~~n~~~~l~aGa 173 (207)
T 2yw3_A 101 QARGVPYLPGVLTPTEVERALAL---GLSALKF-FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGIK-EEHLPHYAALPN 173 (207)
T ss_dssp HHHTCCEEEEECSHHHHHHHHHT---TCCEEEE-TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSCC-GGGHHHHHTCSS
T ss_pred HHhCCCEEecCCCHHHHHHHHHC---CCCEEEE-ecCccccCHHHHHHHHhh--CCCCcEEEeCCCC-HHHHHHHHhCCC
Confidence 33565444 57889998887763 5777765 3 2222388999999653 4679988766554 678889999998
Q ss_pred CeEE-----eCCCCHHHHHHHHHHHHHHh
Q 004001 186 VDFL-----VKPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 186 ddyL-----~KP~~~eeL~~~L~~llrr~ 209 (780)
+.+. .+ -+++++....+.++...
T Consensus 174 ~~vavgSai~~-~d~~~i~~~a~~~~~~~ 201 (207)
T 2yw3_A 174 LLAVGGSWLLQ-GNLEAVRAKVRAAKALL 201 (207)
T ss_dssp BSCEEESGGGS-SCHHHHHHHHHHHHHHC
T ss_pred cEEEEehhhhC-CCHHHHHHHHHHHHHHh
Confidence 8764 34 56777888887776654
No 242
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=46.97 E-value=22 Score=37.14 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcCCCCccEEEEecC------CCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSL------DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~------~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
+++++++|+. ..++|||+|+-+ .-.....+|.++|++++|.--+.++|....+..
T Consensus 85 ~~~v~~~r~~--~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 85 FELIAQIRAR--NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHH--CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHhc--CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 5677777643 257899999743 335568889999999999977777775444333
No 243
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=46.68 E-value=32 Score=36.33 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=54.4
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--C-EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 90 VLLVENDDSTR----HVVAALLRNCG--Y-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 90 VLIVDDD~~~r----~~L~~lL~~~G--y-eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|||-|++-... ..++.+ ++.. . -.+.+.+.+|+.+.++. ..|+|.+|-|+-.+--++++.++ .+
T Consensus 172 vlikdNHi~~~G~i~~Av~~a-r~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~~~l~~av~~~~-----~~ 242 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKA-KKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSGEDIDIAVSIAR-----GK 242 (287)
T ss_dssp EEECTTTC----CHHHHHHHH-HHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHHHHHHHHHHHT-----TT
T ss_pred EEEeHHHHHHhCCHHHHHHHH-HhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCHHHHHHHHHhhc-----CC
Confidence 67766654332 233322 2222 2 23489999999998874 58999999843211122333331 23
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
..|..|+.-..+.+.+..+.|+|.+-
T Consensus 243 -v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 243 -VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp -CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred -ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 35668888888888899999986553
No 244
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=46.49 E-value=44 Score=34.11 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=57.6
Q ss_pred HHHHHHhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHH
Q 004001 103 VAALLRNCGY-EVTEATNGLQAWKILEDL-TNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 103 L~~lL~~~Gy-eV~~A~dg~eALe~L~~~-~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
+...|.+.+. -|+...+.++++++++.. ...+.+|=+. +-..++++++++|++.. +.+ +|-.-.--+.+.+..+
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt-~~t~~a~e~I~~l~~~~--~~~-~iGaGTVlt~~~a~~A 102 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEIT-FRSDAAVEAIRLLRQAQ--PEM-LIGAGTILNGEQALAA 102 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEE-TTSTTHHHHHHHHHHHC--TTC-EEEEECCCSHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-CCCCCHHHHHHHHHHhC--CCC-EEeECCcCCHHHHHHH
Confidence 3444555554 455667777777766532 1334444333 55557899999997642 443 4444445568889999
Q ss_pred HHCCCCeEEeCCCCHHHHHHH
Q 004001 181 LSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 181 l~aGAddyL~KP~~~eeL~~~ 201 (780)
+++||+ ||.-|-...++...
T Consensus 103 i~AGA~-fIvsP~~~~~vi~~ 122 (232)
T 4e38_A 103 KEAGAT-FVVSPGFNPNTVRA 122 (232)
T ss_dssp HHHTCS-EEECSSCCHHHHHH
T ss_pred HHcCCC-EEEeCCCCHHHHHH
Confidence 999995 55667655555444
No 245
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=46.32 E-value=23 Score=36.00 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCCCHH---HHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLDSMG---LVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~~~e---~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
+++++++||+. .++||++++-. +.. .+..+.++|++.++.-....+++...+..
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 45677788653 46899888622 211 12348999999999866555555544443
No 246
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=46.07 E-value=46 Score=32.20 Aligned_cols=96 Identities=9% Similarity=0.066 Sum_probs=60.6
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHH
Q 004001 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKC 180 (780)
Q Consensus 103 L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~a 180 (780)
+...+++.|..+. -+.+..++...+. ..+|+|-+.. .+ -|++++++|+.. .+++||++..+-. .+.+.++
T Consensus 96 ~~~~~~~~g~~vi~g~~t~~e~~~a~~---~Gad~vk~~~~~~--~g~~~~~~l~~~--~~~~pvia~GGI~-~~~~~~~ 167 (205)
T 1wa3_A 96 ISQFCKEKGVFYMPGVMTPTELVKAMK---LGHTILKLFPGEV--VGPQFVKAMKGP--FPNVKFVPTGGVN-LDNVCEW 167 (205)
T ss_dssp HHHHHHHHTCEEECEECSHHHHHHHHH---TTCCEEEETTHHH--HHHHHHHHHHTT--CTTCEEEEBSSCC-TTTHHHH
T ss_pred HHHHHHHcCCcEECCcCCHHHHHHHHH---cCCCEEEEcCccc--cCHHHHHHHHHh--CCCCcEEEcCCCC-HHHHHHH
Confidence 3344555676665 4557778777665 3578776543 21 378888888643 3478988776665 5678899
Q ss_pred HHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 181 LSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 181 l~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
+.+||+.+.. + -+..++...++++.+
T Consensus 168 ~~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~ 198 (205)
T 1wa3_A 168 FKAGVLAVGVGSALVK-GTPDEVREKAKAFVE 198 (205)
T ss_dssp HHHTCSCEEECHHHHC-SCHHHHHHHHHHHHH
T ss_pred HHCCCCEEEECccccC-CCHHHHHHHHHHHHH
Confidence 9999998864 4 343334444444443
No 247
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=45.79 E-value=13 Score=39.17 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=60.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.|+|.||-....-...+...|++.|++|.......+.+ ..+|+||+ -+.||. +++..+... .. +|||
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv---lGGDGT-~L~aa~~~~-~~-~Pil 95 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS---VGGDGT-ILRILQKLK-RC-PPIF 95 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE---EECHHH-HHHHHTTCS-SC-CCEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE---ECCCHH-HHHHHHHhC-CC-CcEE
Confidence 46788885432226678889999999998765433322 24688775 245663 445554322 23 8999
Q ss_pred EEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 167 MMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 167 vLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
-+.. |=.+||. ++.++++..+|.+++.
T Consensus 96 GIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 96 GINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 8864 4456776 5777888888888876
No 248
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=45.66 E-value=90 Score=32.12 Aligned_cols=86 Identities=8% Similarity=0.017 Sum_probs=53.4
Q ss_pred ccEEEEE-e-CCHHH---HHHHHHHHHhCCCEEEEE------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004001 87 SLKVLLV-E-NDDST---RHVVAALLRNCGYEVTEA------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (780)
Q Consensus 87 ~lrVLIV-D-DD~~~---r~~L~~lL~~~GyeV~~A------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IR 155 (780)
.-+|.|| + ++... .+.+...|++.|++|... .+....+..+.. ..+|+||+.. .+.+...+++.++
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~-~~~~a~~~~~~~~ 225 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS--FNPDAIYITG-YYPEIALISRQAR 225 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH--TCCSEEEECS-CHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh--cCCCEEEEcc-chhHHHHHHHHHH
Confidence 3478777 4 44433 355677788889877632 355667777776 6799999843 2234566788886
Q ss_pred hhcCCCCccEEEEecCCCHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~ 177 (780)
+.. ..+|||...........
T Consensus 226 ~~g--~~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 226 QLG--FTGYILAGDGADAPELI 245 (366)
T ss_dssp HTT--CCSEEEECGGGCSTHHH
T ss_pred HcC--CCceEEeeCCcCCHHHH
Confidence 554 45777655454444433
No 249
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=45.65 E-value=1.4e+02 Score=31.16 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHH
Q 004001 122 QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 201 (780)
Q Consensus 122 eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~ 201 (780)
+..+++.. .|++|+-...+.-|+-+++.+. ..+|||+. .. ....+.+..|..+|+.. +.++|...
T Consensus 308 ~~~~~~~~----ad~~v~ps~~E~~~~~~lEAma-----~G~PvI~~-~~---~g~~e~i~~~~~g~l~~--d~~~la~~ 372 (416)
T 2x6q_A 308 EVNAFQRA----SDVILQMSIREGFGLTVTEAMW-----KGKPVIGR-AV---GGIKFQIVDGETGFLVR--DANEAVEV 372 (416)
T ss_dssp HHHHHHHH----CSEEEECCSSCSSCHHHHHHHH-----TTCCEEEE-SC---HHHHHHCCBTTTEEEES--SHHHHHHH
T ss_pred HHHHHHHh----CCEEEECCCcCCCccHHHHHHH-----cCCCEEEc-cC---CCChhheecCCCeEEEC--CHHHHHHH
Confidence 44444443 4665553322334666777773 35787753 22 34456667788899986 99999999
Q ss_pred HHHHHH
Q 004001 202 WQHVWR 207 (780)
Q Consensus 202 L~~llr 207 (780)
|..++.
T Consensus 373 i~~ll~ 378 (416)
T 2x6q_A 373 VLYLLK 378 (416)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988874
No 250
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=45.60 E-value=1e+02 Score=30.44 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=66.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEA--------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A--------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~ 157 (780)
.+.+||++--+. -+..|...|+..|++|..+ ....+.++.+.. ..+|+|++=- -.+.+.+-.+ .
T Consensus 109 ~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~--~~~d~v~ftS---~s~v~~~~~~--~ 180 (229)
T 3p9z_A 109 EKKSVLYLRAKE-IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKP--KEKSILIFTA---ISHAKAFLHY--F 180 (229)
T ss_dssp TTCEEEEEEESS-CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSC--CTTCEEEECS---HHHHHHHHHH--S
T ss_pred CCCEEEEECCcc-chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhc--CCCeEEEEEC---HHHHHHHHHH--h
Confidence 345888886654 3677888999999876422 233344555543 5788887632 1233322222 1
Q ss_pred cCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHH
Q 004001 158 KTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 158 ~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~ll 206 (780)
.....++++.+. ......+.+.|..-++.+-.+.+.|.++|..+.
T Consensus 181 ~~~~~~~~~aIG----~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~ 225 (229)
T 3p9z_A 181 EFLENYTAISIG----NTTALYLQEQGIPSYIAKKPSLEACLELALSLR 225 (229)
T ss_dssp CCCTTCEEEESS----HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHTC
T ss_pred CcccCCEEEEEC----HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHHh
Confidence 122345565554 344556667788777778789999999888763
No 251
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=45.27 E-value=66 Score=33.75 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=68.3
Q ss_pred ccEEEEEeCCHH-----HHHHHHHHHHhCCCE---------EEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHH
Q 004001 87 SLKVLLVENDDS-----TRHVVAALLRNCGYE---------VTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVAL 150 (780)
Q Consensus 87 ~lrVLIVDDD~~-----~r~~L~~lL~~~Gye---------V~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleL 150 (780)
.++++||.+.+. ....+..+++..|+. |.... +.++..+++.. .|++|+-...+.-|+-+
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~~E~~~~~~ 290 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSSGEGFGLCS 290 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCSCCSSCHHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCCcCCCCcHH
Confidence 456777765442 346666666666654 33222 35667777765 57777643434446778
Q ss_pred HHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCC---------------eE--EeCCCCHHHHHHHHHHHHH
Q 004001 151 LSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV---------------DF--LVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 151 l~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAd---------------dy--L~KP~~~eeL~~~L~~llr 207 (780)
++.+. ..+|||+. . .....+.+..|.. ++ +..|-+.++|..+| .++.
T Consensus 291 lEAma-----~G~PvI~s-~---~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 291 AEGAV-----LGKPLIIS-A---VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHT-----TTCCEEEE-C---CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHH-----cCCCEEEc-C---CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 88772 45788753 2 2244566666666 88 99999999999999 8763
No 252
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=45.21 E-value=83 Score=31.27 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-----CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC-----C-CC
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEV-----MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK-----G-AV 186 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDi-----MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a-----G-Ad 186 (780)
+..+....+.+ ..++ |++.+. +.+. .++++++|++.. .+|||+..+-...+.+.++++. | ++
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCcC-CHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 45565555554 4466 455553 2333 488999997642 6899999888888999999988 9 99
Q ss_pred eEEe------CCCCHHHHHHHH
Q 004001 187 DFLV------KPIRKNELKNLW 202 (780)
Q Consensus 187 dyL~------KP~~~eeL~~~L 202 (780)
+++. .++++.+++..+
T Consensus 219 gv~vgsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHHHh
Confidence 8875 588888776643
No 253
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=45.12 E-value=95 Score=32.82 Aligned_cols=85 Identities=9% Similarity=0.103 Sum_probs=49.8
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVDDD~~----~r~~L~~lL~~~GyeV~~A-------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.||-++.. ....++..|++.|++|+.. .+....+..++. ..+|+||+......+...+++.+++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA--DPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH--SCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEccccCchHHHHHHHHHH
Confidence 46665554443 3455666667778887632 366677888876 6799999864211235667888865
Q ss_pred hcCCCCccEEEEecCCCHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGL 176 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~ 176 (780)
.. ...+++........+.
T Consensus 243 ~g--~~~~~~~~~~~~~~~~ 260 (419)
T 3h5l_A 243 DP--TNSLVYLQYGASLAAF 260 (419)
T ss_dssp SC--CSCEEEECSGGGSHHH
T ss_pred cC--CCceEEecCCCCcHHH
Confidence 43 2444443333344433
No 254
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=44.95 E-value=56 Score=35.56 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------EEE-EECCHHHHHHHHHhcCCCceEEEEcc-C-CC------CCHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCG---Y------EVT-EATNGLQAWKILEDLTNHIDLVLTEV-M-PC------LSGVA 149 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~G---y------eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-M-P~------mdGle 149 (780)
.+|.+||-|+.+.+..+..|.... + ++. ...|+.+.++.+......||+||+|. - |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 579999999999999988875321 1 233 57788888776532236799999998 5 52 13356
Q ss_pred HHHHH
Q 004001 150 LLSKI 154 (780)
Q Consensus 150 Ll~~I 154 (780)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 255
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=44.79 E-value=45 Score=34.06 Aligned_cols=54 Identities=24% Similarity=0.124 Sum_probs=35.7
Q ss_pred CccEEEEEeCC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHHH
Q 004001 86 RSLKVLLVEND--------------------DSTRHVVAALLRNCGYEVTEATNGL-----------------QAWKILE 128 (780)
Q Consensus 86 ~~lrVLIVDDD--------------------~~~r~~L~~lL~~~GyeV~~A~dg~-----------------eALe~L~ 128 (780)
++||||+|-.. ......+...|.+.|++|..+.... ...++++
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR 81 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH
Confidence 45789998876 1244556777788899998765432 3455555
Q ss_pred hcCCCceEEEEcc
Q 004001 129 DLTNHIDLVLTEV 141 (780)
Q Consensus 129 ~~~~~pDLVLlDi 141 (780)
+ ..||||++-.
T Consensus 82 ~--~~~Dvi~~~~ 92 (342)
T 2iuy_A 82 T--ADVDVVHDHS 92 (342)
T ss_dssp H--CCCSEEEECS
T ss_pred h--cCCCEEEECC
Confidence 5 5688887765
No 256
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=44.66 E-value=1.8e+02 Score=29.48 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=59.3
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 004001 103 VAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 103 L~~lL~~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
|+..|..-. +.+...-...+.++.+.. ..+|.|++|+ -...+--++...++... ....++++=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHH
Confidence 555555422 233333345556666654 6799999998 33222223333333322 24466777677777888899
Q ss_pred HHHCCCCeEE-eCCCCHHHHHHHHHH
Q 004001 180 CLSKGAVDFL-VKPIRKNELKNLWQH 204 (780)
Q Consensus 180 al~aGAddyL-~KP~~~eeL~~~L~~ 204 (780)
+++.|++.++ +|--+.+++..++..
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HHhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999998854 455578888555433
No 257
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=44.63 E-value=62 Score=34.42 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=58.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEE-EC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTE-AT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~-A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|+.+||.||.--..-...+...|...+++++. +. +.+.+-+..+. ....-+..|+ +.|-. .++
T Consensus 24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~~~~~~~~~~----------~~ll~---~~~ 88 (361)
T 3u3x_A 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV--YADARRIATA----------EEILE---DEN 88 (361)
T ss_dssp --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH--SSSCCEESCH----------HHHHT---CTT
T ss_pred ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH--cCCCcccCCH----------HHHhc---CCC
Confidence 35689999986544434445555567898774 44 33334334433 1111122222 22211 133
Q ss_pred ccEEEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 163 LPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 163 iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+-+|+++... -.+.+..|+++|..=|+-||+ +.++..+++..+
T Consensus 89 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 89 IGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 4455554432 355678999999999999997 566766665543
No 258
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=44.32 E-value=33 Score=35.90 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=43.7
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+-...+.-|+-+++.+. ..+|||+.-... ..+.+..|-.+++..|-+.++|...|..++.
T Consensus 285 adv~v~ps~~e~~~~~~~EAma-----~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSEKESFGLVLLEAMA-----CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCSCCSCCHHHHHHHH-----TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccccCCCchHHHHHHh-----cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 5676654333344677777773 357887653322 2234455778999999999999999998875
No 259
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=44.25 E-value=41 Score=33.84 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEccC-----CCC-CHHHHHHHHHhhcCCCCccEE--EEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVM-----PCL-SGVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiM-----P~m-dGleLl~~IRs~~~~~~iPII--vLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+.++.+.+ ...|+|=+|+| |.+ .|+++++.||+.. +.|+. +|+.. ....+..++++||+.+..
T Consensus 18 ~l~~~i~~~~~--~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~---~~~~~vhlmv~d-p~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDE--AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT---KKTLDVHLMIVE-PEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC---CSEEEEEEESSS-GGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHH--cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc---CCcEEEEEEccC-HHHHHHHHHHcCCCEEEE
Confidence 34455555554 33455544432 443 3789999997542 34555 77743 344678899999998876
Q ss_pred CCC--CHHHHHHHHHHH
Q 004001 191 KPI--RKNELKNLWQHV 205 (780)
Q Consensus 191 KP~--~~eeL~~~L~~l 205 (780)
-.. ..+++...++.+
T Consensus 92 h~e~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQI 108 (230)
T ss_dssp ECSTTTCTTHHHHHHHH
T ss_pred CcccccchhHHHHHHHH
Confidence 554 334455555544
No 260
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=44.07 E-value=41 Score=34.51 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=58.5
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCC-CCHHHHHHHHHhhcC--
Q 004001 89 KVLLVENDDSTRHVVAALLR---NCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKT-- 159 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~---~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~-mdGleLl~~IRs~~~-- 159 (780)
.|||.-..-. ..+..++. .+|..+. .+.+.+|+...+.. ..|+|=+.. +-+ .-.++.+.+|...-.
T Consensus 131 ~VlL~~~~l~--~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~ 205 (254)
T 1vc4_A 131 AALLIVALLG--ELTGAYLEEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKR 205 (254)
T ss_dssp EEEEEHHHHG--GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHT
T ss_pred EEEECccchH--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccc
Confidence 4555443222 44555554 6788765 67888887766654 347775532 211 112344444432210
Q ss_pred CCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 160 RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 160 ~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..++|+|..++-.+.+.+.++++ |++.+|+
T Consensus 206 ~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 206 GFGGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp TCCSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 01578999888888999999999 9999986
No 261
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=43.88 E-value=1e+02 Score=32.43 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=51.8
Q ss_pred HhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CC--CCCH----------HHHHHHHHh--hcCCCCccEEEEe-c
Q 004001 108 RNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MP--CLSG----------VALLSKIMS--HKTRKNLPVIMMS-S 170 (780)
Q Consensus 108 ~~~Gy-eV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP--~mdG----------leLl~~IRs--~~~~~~iPIIvLS-a 170 (780)
++.|+ .+.++.+.++|..+.+. .+|+|++.. +- +.-| .+.++.+.+ +...+++.|+.-. .
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGp 236 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGP 236 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTT
T ss_pred HHCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 45576 45589999999988864 689999875 42 3222 334443321 2234665444333 3
Q ss_pred CCCHHHHHHHHHC--CCCeEEeC
Q 004001 171 LDSMGLVFKCLSK--GAVDFLVK 191 (780)
Q Consensus 171 ~~~~e~~~~al~a--GAddyL~K 191 (780)
-...+++..+++. |+++|+.-
T Consensus 237 IstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 237 IANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp CCSHHHHHHHHHHCTTCCEEEES
T ss_pred CCCHHHHHHHHhcCCCccEEEee
Confidence 4678899999999 99999974
No 262
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.61 E-value=1e+02 Score=30.90 Aligned_cols=66 Identities=11% Similarity=-0.047 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCEEEEECC-----HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 100 RHVVAALLRNCGYEVTEATN-----GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~d-----g~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
...+...+++.||++..+.. .. +.++.+.. ..+|.||+-. .+. .-.++++++++ ..+|||++..
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~~~~~~----~giPvV~~~~ 94 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDT-AFSKSLQRANK----LNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSS-TTHHHHHHHHH----HTCCEEEESC
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH-HHHHHHHHHHH----CCCCEEEEcC
Confidence 34456666778999886652 23 34555554 5789888743 222 12456667654 3589998865
Q ss_pred CC
Q 004001 171 LD 172 (780)
Q Consensus 171 ~~ 172 (780)
..
T Consensus 95 ~~ 96 (297)
T 3rot_A 95 RP 96 (297)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 263
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=43.36 E-value=1.1e+02 Score=31.61 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+. . .|+ +++.+. ..+|||+......... ..+.| .+++.. .+.++|..+|.+++.
T Consensus 275 ad~~v~~---S-~g~-~lEA~a-----~G~PvI~~~~~~~~~~---~~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 275 SLLLVTD---S-GGL-QEEGAA-----LGVPVVVLRNVTERPE---GLKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp EEEEEES---C-HHH-HHHHHH-----TTCCEEECSSSCSCHH---HHHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred CcEEEEC---C-cCH-HHHHHH-----cCCCEEeccCCCcchh---hhcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 4655543 2 355 546552 4589887543333222 23455 477774 599999999998873
No 264
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=43.31 E-value=68 Score=33.65 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=59.4
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 90 VLLVENDDSTR----HVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 90 VLIVDDD~~~r----~~L~~lL~~~G--yeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
|||-|++-... ..++..-+..+ .-.+.+.+.+++.+.++. ..|+|++|.|.-.+-.++++.++.. .+++
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~~~~~~v~~l~~~--~~~v 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVWQTQTAVQRRDSR--APTV 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHHHHHHHHHHHHHH--CTTC
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHhhcc--CCCe
Confidence 67776654332 23333333333 234478899999988874 5799999984332333455555432 2344
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.|..|+--..+.+.+..+.|+|.|.
T Consensus 243 -~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 243 -MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp -EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred -EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5667777788888999999987665
No 265
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=43.03 E-value=1.3e+02 Score=30.70 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=38.3
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 134 pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.|++|+. . |.-+++.+. ..+|||+.-.... ..+.+..| .+++..+ +.++|..+|..++.
T Consensus 283 ad~~v~~---s--g~~~lEA~a-----~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTD---S--GGVQEEAPS-----LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEEC---C--HHHHHHHHH-----HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEEC---C--CChHHHHHh-----cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 4666543 2 444666663 3478886522122 23346778 8899877 99999999999875
No 266
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=42.57 E-value=33 Score=35.84 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCH--HHHHHHHHHHHHH
Q 004001 132 NHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK--NELKNLWQHVWRR 208 (780)
Q Consensus 132 ~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~--eeL~~~L~~llrr 208 (780)
..+|+||+|+.|. +|...+...|... ..+.+.+.+.-|-..|+.|=|.. .++.+.+..+-+.
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~ 201 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR 201 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH
Confidence 4789999999776 8877777776532 23556677888877899999987 7777766665544
No 267
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=41.90 E-value=1.1e+02 Score=30.97 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 106 LLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 106 lL~~~GyeV~~A~---dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
.+++.|..+-.+- +..+.++.+.. ...+|+|++=. -|+.+| ++-+++||+.. .+++| .+.+--..
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~-~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I-~VdGGI~~ 184 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNI-QVDGGLNI 184 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHT-TTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEE-EEESSCCH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhh-cCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeE-EEECCCCH
Confidence 6778898877543 33444554432 01589888765 676655 55666776543 35554 45666678
Q ss_pred HHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHH
Q 004001 175 GLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVW 206 (780)
Q Consensus 175 e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~ll 206 (780)
+.+..+.++||+-++. +--++.+-...|+..+
T Consensus 185 ~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~ 221 (227)
T 1tqx_A 185 ETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSV 221 (227)
T ss_dssp HHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999998865 3324444444444433
No 268
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=41.82 E-value=1e+02 Score=31.85 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..+|||+.-..... .+.++.| .+++..| +.++|..+|..++.
T Consensus 300 ~G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 45888866431222 2235567 8899988 99999999999874
No 269
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=41.48 E-value=77 Score=33.56 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=60.2
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHHHHHhcCCCceE-EEEccCCCCCHHHHHHHHHhhcC
Q 004001 83 LHLRSLKVLLVENDDSTRHVVAALLRN-CGYEVTE-ATNGLQAWKILEDLTNHIDL-VLTEVMPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 83 ~~~~~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~~-A~dg~eALe~L~~~~~~pDL-VLlDiMP~mdGleLl~~IRs~~~ 159 (780)
..|+.+||.||.--..-...+..++.. .+++++. +..-.+..+.+.+. ..+.+ +..|+ -++ |. .
T Consensus 19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~~~~------~~l---l~-~-- 85 (357)
T 3ec7_A 19 FQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK-YAIEAKDYNDY------HDL---IN-D-- 85 (357)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH-HTCCCEEESSH------HHH---HH-C--
T ss_pred cCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH-hCCCCeeeCCH------HHH---hc-C--
Confidence 345678999999877666666666533 4788774 44333333333221 11111 22221 122 21 1
Q ss_pred CCCccEEEEec--CCCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSS--LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 160 ~~~iPIIvLSa--~~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
+++-+|+++. ..-.+.+..|+++|..=|+-||+ +.++..+++..+-
T Consensus 86 -~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 135 (357)
T 3ec7_A 86 -KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQ 135 (357)
T ss_dssp -TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHH
Confidence 2233444433 33456678899999999999997 5677776666543
No 270
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=41.46 E-value=83 Score=33.33 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=59.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNC-GYEVTE-ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~-A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|+.+||.||.--..-...+. .|... +++++. +..-.+..+.... +.+-+.+ +--+++. . ++
T Consensus 3 m~~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~~-----~~~~ll~----~---~~ 65 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGLKIYE-----SYEAVLA----D---EK 65 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBCS-----CHHHHHH----C---TT
T ss_pred CCcCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCCceeC-----CHHHHhc----C---CC
Confidence 46689999988766554444 44444 788774 4433344444432 2221111 1112222 1 23
Q ss_pred ccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 163 LPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 163 iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
+-+|++... .-.+.+.+|+++|..=|+-||+ +.++...++..+-
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~ 113 (359)
T 3e18_A 66 VDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAK 113 (359)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHH
Confidence 444444333 2356678899999999999996 5667766665543
No 271
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=41.30 E-value=56 Score=34.01 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=5.3
Q ss_pred CCceEEEEc
Q 004001 132 NHIDLVLTE 140 (780)
Q Consensus 132 ~~pDLVLlD 140 (780)
.+||+||.|
T Consensus 101 ~~pD~Vi~d 109 (402)
T 3ia7_A 101 NPPDLVVYD 109 (402)
T ss_dssp CCCSEEEEE
T ss_pred cCCCEEEEC
Confidence 456666666
No 272
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=41.28 E-value=31 Score=40.40 Aligned_cols=97 Identities=5% Similarity=-0.059 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CC-CCC-HHHHHHHHHhhcCCCCccEEEEecCCC
Q 004001 100 RHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CLS-GVALLSKIMSHKTRKNLPVIMMSSLDS 173 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A---~dg~eALe~L~~~~~~pDLVLlDi-MP-~md-GleLl~~IRs~~~~~~iPIIvLSa~~~ 173 (780)
..++..+|+..||+|+.. .+ +++++.+.+ ..+|||.+-. +. -+. .-++++.|++... ..|+|.+...
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e--~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~----~~V~vgG~P~ 599 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALKAAGA----KALYLSGAFK 599 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHHHTTC----SEEEEESCGG
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh--cCCCEEEEecccHHHHHHHHHHHHHHHhCCC----CeEEEeCCCC
Confidence 356777899999998843 34 788888776 5788888765 32 111 3467788876542 3355666432
Q ss_pred HH--HHHHHHHCCCCeEEeCCCCHHHHHHHHHH
Q 004001 174 MG--LVFKCLSKGAVDFLVKPIRKNELKNLWQH 204 (780)
Q Consensus 174 ~e--~~~~al~aGAddyL~KP~~~eeL~~~L~~ 204 (780)
.. ......+ |+|+|+.--.+..++...+..
T Consensus 600 ~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~~ 631 (637)
T 1req_B 600 EFGDDAAEAEK-LIDGRLFMGMDVVDTLSSTLD 631 (637)
T ss_dssp GGGGGHHHHHH-HCCCEECTTCCHHHHHHHHHH
T ss_pred ccchhhHHHHh-ccceEecCCcCHHHHHHHHHH
Confidence 21 2334555 999999888777766555443
No 273
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=40.93 E-value=1e+02 Score=33.38 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVT-EAT-NGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKT 159 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~-~A~-dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~ 159 (780)
+++||.||.-- . ...-...|.+. +++++ +++ +.+.|-+..++ ..+. ++.|+ |.+
T Consensus 6 ~~~rv~VvG~G-~-g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~--~gv~-~~~~~~~l~~--------------- 65 (372)
T 4gmf_A 6 PKQRVLIVGAK-F-GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA--FGIP-LYTSPEQITG--------------- 65 (372)
T ss_dssp -CEEEEEECST-T-THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH--TTCC-EESSGGGCCS---------------
T ss_pred CCCEEEEEehH-H-HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH--hCCC-EECCHHHHhc---------------
Confidence 46799999865 2 33333333333 67877 444 34445555554 2232 34454 321
Q ss_pred CCCccEEEEecCCC-----HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 160 RKNLPVIMMSSLDS-----MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 160 ~~~iPIIvLSa~~~-----~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
..++ |+|.|.... .+...+|+++|..=++-||++.+|..++++..-+
T Consensus 66 ~~D~-v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 66 MPDI-ACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp CCSE-EEECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 1233 233333222 4678899999999999999999988777665433
No 274
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=40.82 E-value=1.1e+02 Score=32.84 Aligned_cols=92 Identities=9% Similarity=0.062 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 89 KVLLVENDDSTR----HVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 89 rVLIVDDD~~~r----~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
-|||-|.+-... ..++.+-+..++ -.+.+.+.+++.+.++. ..|+|.+|-|+ .+.++++.+.- .++
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~~----~~~l~~av~~l-~~~ 275 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNFS----LEMMREAVKIN-AGR 275 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCC----HHHHHHHHHHH-TTS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCCC----HHHHHHHHHHh-CCC
Confidence 377777654332 333333333333 24589999999988874 58999999842 23333333221 133
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
+ .|..|+.-+.+.+.+..+.|+|.|-
T Consensus 276 v-~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 276 A-ALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp S-EEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred C-eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3 5678888889999999999996554
No 275
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=40.60 E-value=5.8 Score=40.20 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 004001 609 HYDNCHHLVHNMQQ 622 (780)
Q Consensus 609 ~~~~~~~~~~~~~~ 622 (780)
||||||||+|.+.|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (291)
T 2yjp_A 3 HHHHHHHHHHSSGH 16 (291)
T ss_dssp --------------
T ss_pred ccccccccccccCc
No 276
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=40.37 E-value=43 Score=33.91 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHH
Q 004001 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW 202 (780)
Q Consensus 144 ~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L 202 (780)
.-++++.++.|++. +++ .+|-.-.-.+.+.+..++++||+ ||.-|....++....
T Consensus 48 t~~a~~~I~~l~~~--~p~-~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~~~evi~~~ 102 (217)
T 3lab_A 48 TEAGLAAISAIKKA--VPE-AIVGAGTVCTADDFQKAIDAGAQ-FIVSPGLTPELIEKA 102 (217)
T ss_dssp STTHHHHHHHHHHH--CTT-SEEEEECCCSHHHHHHHHHHTCS-EEEESSCCHHHHHHH
T ss_pred CccHHHHHHHHHHH--CCC-CeEeeccccCHHHHHHHHHcCCC-EEEeCCCcHHHHHHH
Confidence 33567777777643 244 35545455567778888888874 544565555554443
No 277
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=40.04 E-value=1.2e+02 Score=25.58 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=52.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G-yeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+++|+|+.- -.+-..+...|...| ++|..+....+.++.+.. ....++..|+ . +--++.+.+ ..+-+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~-~--~~~~~~~~~------~~~d~ 72 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDA-K--DEAGLAKAL------GGFDA 72 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCT-T--CHHHHHHHT------TTCSE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecC-C--CHHHHHHHH------cCCCE
Confidence 468999988 777777777787888 888866655555555553 4456666665 1 112222333 12334
Q ss_pred EEEecCC--CHHHHHHHHHCCCCeE
Q 004001 166 IMMSSLD--SMGLVFKCLSKGAVDF 188 (780)
Q Consensus 166 IvLSa~~--~~e~~~~al~aGAddy 188 (780)
|+.+... .......+++.|+.-|
T Consensus 73 vi~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 73 VISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEECCCchhhHHHHHHHHHhCCCEE
Confidence 5444322 2344556778887543
No 278
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=39.90 E-value=58 Score=31.29 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=45.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gy-eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs 156 (780)
+|..||-++...+..+..++..++ .+. ...+..+.+.. ....||+||+|. .....-.++++.|.+
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh---cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 799999999999999999988876 444 34455443321 224799999997 444445567777754
No 279
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=39.25 E-value=99 Score=30.48 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...+++.||.+..+... .+.++.+.. ..+|-||+-. .+ .++++.+++ ..+|||++-..
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~~ 94 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSFSN----PQTVQEILH----QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESSCC----HHHHHHHHT----TSSCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecCCc----HHHHHHHHH----CCCCEEEEecc
Confidence 344556677789988755432 234555554 5788888754 32 566777743 46899888654
No 280
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=39.15 E-value=75 Score=32.31 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=53.6
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVE-NDDS---TRHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVD-DD~~---~r~~L~~lL~~~GyeV~~---A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-||.||. ++.. ..+.++..|++.|+++.. + .+....+..+.. ..+|+||+.. .+.....+++.+++
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~dav~~~~-~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA--ANPDAILVGA-SGTAAALPQTTLRE 212 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH--HCCSEEEEEC-CHHHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh--cCCCEEEEec-CcchHHHHHHHHHH
Confidence 4666654 4433 345567778888987642 2 345566777765 5689888753 23346778888876
Q ss_pred hcCCCCccEEEEecCCCHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
.. ..+|+|.+....+.....
T Consensus 213 ~g--~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 213 RG--YNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp TT--CCSEEEECGGGCSHHHHH
T ss_pred cC--CCccEEeccCcCcHHHHH
Confidence 54 457887666666655443
No 281
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=39.00 E-value=1.1e+02 Score=32.79 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=59.6
Q ss_pred CCccEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCce--EEEEccCCCCCHHHHHHHHHh
Q 004001 85 LRSLKVLLVENDD---STRHVVAALLRNCGYEVTE-A-T-NGLQAWKILEDLTNHID--LVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 85 ~~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~-A-~-dg~eALe~L~~~~~~pD--LVLlDiMP~mdGleLl~~IRs 156 (780)
|+.+||.||.--. .-...+..+....+++++. + . +.+.+-+..++ ..+. -+.. |--+++..-+.
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~--~g~~~~~~~~------~~~~ll~~~~~ 81 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ--LGVDSERCYA------DYLSMFEQEAR 81 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH--TTCCGGGBCS------SHHHHHHHHTT
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH--hCCCcceeeC------CHHHHHhcccc
Confidence 5678999998765 3333344433333577764 4 3 34444444443 1111 1111 22334433210
Q ss_pred hcCCCCccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
. .+++-+|++... .-.+.+..|+++|..=|+-||+ +.++..+++..+
T Consensus 82 ~--~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 132 (398)
T 3dty_A 82 R--ADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELS 132 (398)
T ss_dssp C--TTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHH
T ss_pred c--CCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH
Confidence 1 123444444332 3456788999999999999997 456776666554
No 282
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=38.98 E-value=35 Score=32.90 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=44.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCC-ceEEEEcc-CCCCCHHHHHHHHH
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGY---EVT-EATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gy---eV~-~A~dg~eALe~L~~~~~~-pDLVLlDi-MP~mdGleLl~~IR 155 (780)
+|..||-++...+..+..+...|+ .+. ...+..+.+..+. ... ||+|++|. ....+-.++++.+.
T Consensus 78 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~~~~~~~~l~~~~ 148 (201)
T 2ift_A 78 KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVVFLDPPFHFNLAEQAISLLC 148 (201)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEEEECCCSSSCHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc--cCCCCCEEEECCCCCCccHHHHHHHHH
Confidence 799999999999999999988876 444 3445544332111 246 99999997 44333445677764
No 283
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=38.83 E-value=1.9e+02 Score=31.18 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc--CC----CCCHHHHHHHHHhhcCCCCccEEEEe
Q 004001 98 STRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi--MP----~mdGleLl~~IRs~~~~~~iPIIvLS 169 (780)
...+.++.+-+..+.-|+ .+.+.++|....+ ..+|.|++.- -. +...++++.+|++. ....+|||+-.
T Consensus 204 ~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~---~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~a-v~~~ipVia~G 279 (352)
T 3sgz_A 204 FCWNDLSLLQSITRLPIILKGILTKEDAELAMK---HNVQGIVVSNHGGRQLDEVSASIDALREVVAA-VKGKIEVYMDG 279 (352)
T ss_dssp CCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHH---TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHH-HTTSSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHH---cCCCEEEEeCCCCCccCCCccHHHHHHHHHHH-hCCCCeEEEEC
Confidence 334456555555554433 5678888877765 4688888743 11 23457888888643 23469999999
Q ss_pred cCCCHHHHHHHHHCCCCeEEe
Q 004001 170 SLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 170 a~~~~e~~~~al~aGAddyL~ 190 (780)
+-.+..++.+++.+||+.+..
T Consensus 280 GI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 280 GVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp SCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999765
No 284
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=38.80 E-value=2.3e+02 Score=29.82 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCCCCccEE--EEecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPII--vLSa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llrr 208 (780)
.++++++|++. ..+||| ...+-...+.+.+++.+||+.++. |--++.+....+...+..
T Consensus 195 ~~~ll~~i~~~---~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 195 PIDLILLTRKL---KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp CHHHHHHHHHH---TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHh---cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 36788888654 246776 445555888999999999999985 555666655555555543
No 285
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=38.55 E-value=2.6e+02 Score=26.51 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=52.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC-CCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~-~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~ 162 (780)
.+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..||+||+|. .+. -..+++.+... ..+.
T Consensus 84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~--~~~~l~~~~~~-L~pg 160 (223)
T 3duw_A 84 GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN--NPAYFEWALKL-SRPG 160 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG--HHHHHHHHHHT-CCTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHH--HHHHHHHHHHh-cCCC
Confidence 4799999999999999999988876 244 6778877776665321 4699999997 432 23556665432 2333
Q ss_pred ccEEEEec
Q 004001 163 LPVIMMSS 170 (780)
Q Consensus 163 iPIIvLSa 170 (780)
- +|++..
T Consensus 161 G-~lv~~~ 167 (223)
T 3duw_A 161 T-VIIGDN 167 (223)
T ss_dssp C-EEEEES
T ss_pred c-EEEEeC
Confidence 3 555543
No 286
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=38.51 E-value=80 Score=31.71 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-CCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 119 NGLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 119 dg~eALe~L~~~~~~pD-LVLlDi-MP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
+..+.++.+.+ ...| |.|.|. ..+. .-++++++|++. ..+|||+.....+.+.+.++++.||+.++.=
T Consensus 31 ~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHH--CCCCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 45555555554 2344 445665 3221 127888888643 4689999877777788889999999998764
No 287
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=38.17 E-value=57 Score=34.71 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=44.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC-----CHHHHHHHHHh
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL-----SGVALLSKIMS 156 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m-----dGleLl~~IRs 156 (780)
...+|.+||=++.+.+..++.|... .-+|. ...|+.+.+..+.. ..||+||+|. .+.. ...++++.+++
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGAITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTSCCCGGGSBHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCccccchhhhHHHHHHHHHH
Confidence 3458999999999998888877532 12233 56777766543322 5799999997 5432 12466666653
No 288
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=38.11 E-value=35 Score=33.24 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=37.2
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCc-eEEEEcc
Q 004001 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVLTEV 141 (780)
Q Consensus 83 ~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~p-DLVLlDi 141 (780)
..+++++|||..-.-.+-..|...|.+.|++|+.+....+.++.+.. ..+ .++..|+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl 74 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--RGASDIVVANL 74 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--TTCSEEEECCT
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--CCCceEEEccc
Confidence 34677899999998888888888888889999855433333444443 345 5566564
No 289
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=37.99 E-value=2.2e+02 Score=28.23 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=54.6
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----------HHHHHHHHhhcCCCCccEEEEecC
Q 004001 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----------VALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 105 ~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-----------leLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
......|..+. .+.+..++ +.+.. ...++|-+.- ..-..| -++++.||... ..+||++-.+-
T Consensus 105 ~~a~~~Gl~~iv~v~~~~e~-~~~~~--~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~--~~~~ii~ggGI 179 (219)
T 2h6r_A 105 NKCKNLGLETIVCTNNINTS-KAVAA--LSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEIN--KDVKVLCGAGI 179 (219)
T ss_dssp HHHHHHTCEEEEEESSSHHH-HHHTT--TCCSEEEECCCC--------------CSHHHHHHHHHHC--TTCEEEECSSC
T ss_pred HHHHHCCCeEEEEeCCchHH-HHHHh--CCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhcc--CCCeEEEEeCc
Confidence 33445688766 55665554 33433 3456665554 320022 23455555432 36888887887
Q ss_pred CCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHH
Q 004001 172 DSMGLVFKCLSKGAVDFLV-----KPIRKNELKNL 201 (780)
Q Consensus 172 ~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~ 201 (780)
...+.+..+...|+|++|+ |+-++.++...
T Consensus 180 ~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~ 214 (219)
T 2h6r_A 180 SKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRE 214 (219)
T ss_dssp CSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHH
T ss_pred CcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHH
Confidence 7788888899999999986 66666554443
No 290
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=37.98 E-value=1.5e+02 Score=32.15 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=58.9
Q ss_pred CCccEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004001 85 LRSLKVLLVENDD---STRHVVAALLRNCGYEVTE-A-T-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (780)
Q Consensus 85 ~~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~-A-~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~ 158 (780)
|+.+||.||.--. .-...+..+....+++++. + . +.+.+-+..++.....+-+.. +--+++..-..+.
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~------~~~~ll~~~~~~~ 108 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYS------DFKEMAIREAKLK 108 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCS------CHHHHHHHHHHCT
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccC------CHHHHHhcccccC
Confidence 5678999998775 3333344433333577764 4 3 344444444331111001111 2233444321111
Q ss_pred CCCCccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 159 TRKNLPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 159 ~~~~iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+++-+|++... .-.+.+..|+++|..=|+-||+ +.++..+++..+
T Consensus 109 --~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 157 (417)
T 3v5n_A 109 --NGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAA 157 (417)
T ss_dssp --TCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred --CCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 23334444333 3456788899999999999996 566776665544
No 291
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=37.94 E-value=1.3e+02 Score=33.89 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCceEEEEcc-CCCCCH-HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 120 GLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDi-MP~mdG-leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..+.++.|.+ ..+|+|++|. .+...+ ++++++|++. ++++|||+- .-...+....+.++|++.++.
T Consensus 257 ~~era~aLve--aGvd~I~Id~a~g~~~~v~~~i~~i~~~--~~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 257 AMTRIDALVK--ASVDAIVLDTAHGHSQGVIDKVKEVRAK--YPSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHH--CTTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHh--hccceEEecccccchhhhhhHHHHHHHh--CCCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 3444555554 5689999998 776555 5788999764 366777753 344677888999999988774
No 292
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=37.56 E-value=99 Score=30.24 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=46.7
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEcc-CCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 117 ATNGLQAWKILEDLTNHID-LVLTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 117 A~dg~eALe~L~~~~~~pD-LVLlDi-MP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..+..+.++.+.+ ..+| |.|.|. .... ..++++++|++. ..+||++.....+.+.+.+++++||+.++.
T Consensus 32 ~~~~~~~a~~~~~--~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 32 VGDPVEMAVRYEE--EGADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp EECHHHHHHHHHH--TTCSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3466666666665 4467 445554 3211 246778888654 368999888778888889999999988764
No 293
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=37.55 E-value=92 Score=31.87 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=52.8
Q ss_pred cEEEEE-eCCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDDST---RHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~~~---r~~L~~lL~~~GyeV~~---A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.+| +++... .+.+...|++.|.++.. + .+...++..+.. ..+|+||+.. .......+++.+++
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~d~i~~~~-~~~~a~~~~~~~~~ 216 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED--EAPQAIYLAM-AYEDAAPFLRALRA 216 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH--HCCSEEEEES-CHHHHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh--cCCCEEEEcc-CchHHHHHHHHHHH
Confidence 466665 444433 34566777788987652 2 356677777765 4689888764 11235677888876
Q ss_pred hcCCCCccEEEEecCCCHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
.. ..+|||............
T Consensus 217 ~g--~~~p~~~~~~~~~~~~~~ 236 (358)
T 3hut_A 217 RG--SALPVYGSSALYSPKFID 236 (358)
T ss_dssp TT--CCCCEEECGGGCSHHHHH
T ss_pred cC--CCCcEEecCcccCHHHHH
Confidence 54 468877665555554443
No 294
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=37.47 E-value=1.2e+02 Score=32.04 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCCCccEEEE--ecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHHHh
Q 004001 147 GVALLSKIMSHKTRKNLPVIMM--SSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWRRC 209 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvL--Sa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llrr~ 209 (780)
.++++++|++. ..+|||++ ..-...+.+.++++.|++++++ +--++......+...+..+
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 47889999764 46899887 3344688999999999999975 4445777777777776644
No 295
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=37.34 E-value=1.9e+02 Score=28.80 Aligned_cols=66 Identities=8% Similarity=0.175 Sum_probs=47.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~---~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++......+..++..|+ .|. ...+..+.+..+... ...||+||+|. ... -..+++.+.
T Consensus 105 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~--~~~~l~~~~ 177 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN--YLNYHKRLI 177 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTT--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHH--HHHHHHHHH
Confidence 4799999999999999999998886 344 567777777655311 25799999997 432 344555554
No 296
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=37.23 E-value=1.6e+02 Score=30.86 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=57.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
+++||.||.--..-...+..+++. .+++++ .+..-.+..+.+.+ .+.+-..+ +--+++. . +++
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~---~~~~~~~~-----~~~~ll~----~---~~~ 76 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE---RTGARGHA-----SLTDMLA----Q---TDA 76 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HHCCEEES-----CHHHHHH----H---CCC
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH---HcCCceeC-----CHHHHhc----C---CCC
Confidence 567899998766666666555554 478876 44433333333332 12222221 1122222 1 223
Q ss_pred cEEEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 164 PVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 164 PIIvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
-+|+++... ..+.+..++++|..-|+-||+ +.++...++..+
T Consensus 77 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a 122 (354)
T 3q2i_A 77 DIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAA 122 (354)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH
T ss_pred CEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHH
Confidence 344443332 345677889999988899996 556666655544
No 297
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=37.15 E-value=1.6e+02 Score=30.19 Aligned_cols=86 Identities=10% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCC-CceEEEEcc--CCC--CCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 99 TRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTN-HIDLVLTEV--MPC--LSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~-~pDLVLlDi--MP~--mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
....+....+.+|..+. .+.+.+|+...+. . .+|+|-+.. +-. .| ++...+|... ...++++|.-++-.
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~---l~g~~iIGinnr~l~t~~~d-~~~~~~l~~~-ip~~~~vIaEsGI~ 212 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFS---VIRPKIIGINTRDLDTFEIK-KNVLWELLPL-VPDDTVVVAESGIK 212 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHT---TCCCSEEEEECBCTTTCCBC-TTHHHHHGGG-SCTTSEEEEESCCC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh---cCCCCEEEEeCcccccCCCC-HHHHHHHHHh-CCCCCEEEEeCCCC
Confidence 34445555567899876 7889998776664 4 688887664 322 22 4555555432 22456777777778
Q ss_pred CHHHHHHHHHCCCCeEEe
Q 004001 173 SMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~ 190 (780)
..+++.++.++ ++.||+
T Consensus 213 t~edv~~~~~~-a~avLV 229 (251)
T 1i4n_A 213 DPRELKDLRGK-VNAVLV 229 (251)
T ss_dssp CGGGHHHHTTT-CSEEEE
T ss_pred CHHHHHHHHHh-CCEEEE
Confidence 89999999999 999986
No 298
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=37.11 E-value=2.8e+02 Score=29.17 Aligned_cols=44 Identities=25% Similarity=0.126 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 145 LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 145 mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
....+.+..+++. ...+|||+..+-.+.+++.+++.+||+.++.
T Consensus 236 ~~~~~~l~~v~~~--~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 236 ISTAASLAEIRSE--FPASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp CCHHHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHh--cCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4567778877653 2579999999999999999999999999865
No 299
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=37.04 E-value=66 Score=34.57 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=41.6
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDS-----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~-----~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-|+|||-|... ..+.+...|+..|+++..+. ...++++.+++ ..+|+||- +-+..-+++.+.
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~IIa--vGGGsv~D~AK~ 116 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRN--DSFDFVVG--LGGGSPMDFAKA 116 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTT--SCCSEEEE--EESHHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHh--cCCCEEEE--eCChHHHHHHHH
Confidence 48888887733 35777888888888765432 23455556654 57898874 344455677666
Q ss_pred HHh
Q 004001 154 IMS 156 (780)
Q Consensus 154 IRs 156 (780)
+..
T Consensus 117 iA~ 119 (371)
T 1o2d_A 117 VAV 119 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 300
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=36.92 E-value=77 Score=33.61 Aligned_cols=65 Identities=14% Similarity=0.009 Sum_probs=44.6
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeE
Q 004001 115 TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 115 ~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddy 188 (780)
+.+.+.+++.+.++. .+|+|.+|-|+- -++-+.++.. .+++ .|..|+.-+.+.+.+..+.|+|.|
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn~~~---~~l~~av~~i--~~~v-~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDNFTL---DMMRDAVRVT--EGRA-VLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEESCCH---HHHHHHHHHH--TTSE-EEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCH---HHHHHHHHHh--CCCC-eEEEEcCCCHHHHHHHHHcCCCEE
Confidence 469999999888874 589999998432 2222223221 2333 566788888888889999999655
No 301
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=36.86 E-value=1.6e+02 Score=30.64 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=52.8
Q ss_pred ccEEEEEeCCHHH----HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004001 87 SLKVLLVENDDST----RHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (780)
Q Consensus 87 ~lrVLIVDDD~~~----r~~L~~lL~~~GyeV~~A-------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IR 155 (780)
..||.||-++... ...++..|++.|.+|+.. .+....+..++. ..+|+||+.. .+.+...+++.++
T Consensus 143 ~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~--~~~dav~~~~-~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 143 GAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQ--AGVEYVVHQN-VAGPVANILKDAK 219 (392)
T ss_dssp TCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHH--TTCCEEEEES-CHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHh--cCCCEEEEec-CcchHHHHHHHHH
Confidence 3467666544332 345777788889877521 255667777776 5799998743 2334667888887
Q ss_pred hhcCCCCccEEEEecCCCHHHH
Q 004001 156 SHKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 156 s~~~~~~iPIIvLSa~~~~e~~ 177 (780)
+.. ..+|++......+....
T Consensus 220 ~~g--~~~~~~~~~~~~~~~~~ 239 (392)
T 3lkb_A 220 RLG--LKMRHLGAHYTGGPDLI 239 (392)
T ss_dssp HTT--CCCEEEECGGGCSHHHH
T ss_pred HcC--CCceEEEecCcccHHHH
Confidence 644 45677655444444443
No 302
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=36.82 E-value=81 Score=33.42 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=59.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|+.+||.||.--..-...+...|... +++++ .+..-.+..+.+.+. ....-+..| --+++. . ++
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~~~~~~~~~------~~~ll~----~---~~ 68 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF-ISDIPVLDN------VPAMLN----Q---VP 68 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT-SCSCCEESS------HHHHHH----H---SC
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh-cCCCcccCC------HHHHhc----C---CC
Confidence 45689999998776654333444444 78877 444434444444331 111112212 122222 1 22
Q ss_pred ccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 163 LPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 163 iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
+-+|++... .-.+.+.+|+++|..=|+-||+ +.++..+++..+-
T Consensus 69 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~ 116 (359)
T 3m2t_A 69 LDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAAR 116 (359)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 334444433 2345678899999999999996 5667776665543
No 303
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=36.74 E-value=66 Score=36.22 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+.++.+.+ ..+|+|.+|. .+... -++++++|++. .+++|||+ ..-...+.+..+.++||+.++.
T Consensus 233 ~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~i~~ir~~--~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHH--CTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--ccCceEEeccccccchHHHHHHHHHHHH--CCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444444 4689999998 76543 35788888764 36788876 3334567888999999988875
No 304
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=36.57 E-value=1.9e+02 Score=30.05 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=55.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
++||.||.--..-...+..+.+..+++++ .+....+..+.+.. .+.+-+.+- ++.+-. .+++-+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~g~~~~~~---------~~~~l~---~~~~D~ 68 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE---ANGAEAVAS---------PDEVFA---RDDIDG 68 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---TTTCEEESS---------HHHHTT---CSCCCE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---HcCCceeCC---------HHHHhc---CCCCCE
Confidence 47899998766555555554444477777 44443444444433 122222221 122211 123344
Q ss_pred EEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHH
Q 004001 166 IMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQH 204 (780)
Q Consensus 166 IvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ 204 (780)
|+++.. ...+.+..|+++|..-|+-||+ +.++...++..
T Consensus 69 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~ 111 (344)
T 3euw_A 69 IVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEK 111 (344)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHH
T ss_pred EEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHH
Confidence 444333 2345677889999999999995 45666555444
No 305
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=36.48 E-value=45 Score=34.83 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=59.7
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceE-EEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVEN-DDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDL-VLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDD-D~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDL-VLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
++||.||-- -..-...+..+ ...+.+++.+.+.......+.+ ..+.+ ++.|+ .+-+++++.|+. ..+++-
T Consensus 3 mirvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~~~~~--~~~~~~~~~~~---~~ll~~~~~l~~--~~~~vD 74 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVGLVDS--FFPEAEFFTEP---EAFEAYLEDLRD--RGEGVD 74 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCGGGGG--TCTTCEEESCH---HHHHHHHHHHHH--TTCCCS
T ss_pred ceEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHHHHHh--hCCCCceeCCH---HHHHHHhhhhcc--cCCCCc
Confidence 578999987 43444444444 4457887755443322222222 11222 22221 001122234432 124455
Q ss_pred EEEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 165 VIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 165 IIvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
+|+++... -.+.+.+|+++|..=|+-||+ +.+++.+++..+-
T Consensus 75 ~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 120 (312)
T 3o9z_A 75 YLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEA 120 (312)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHH
T ss_pred EEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 55554433 356688999999999999996 5677777666543
No 306
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=36.43 E-value=1.3e+02 Score=31.21 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=34.8
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEAT---NGL----QAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~---dg~----eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+|+|-|. .....+..+.+..|+.+.... +.. ++++.++. ..+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 466899999883 444445555556677766542 333 34555543 5799999998
No 307
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=36.20 E-value=1.2e+02 Score=29.88 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g---~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+.. . .+.++.+.. ..+|.||+-........++++++++ ..+|||++-..
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA--QKPDAIIEQLGNLDVLNPWLQKIND----AGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HCCSEEEEESSCHHHHHHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChhhhHHHHHHHHH----CCCcEEEecCC
Confidence 345567777788998886532 2 334555554 4688888643110112345666643 36899888554
No 308
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=36.09 E-value=36 Score=32.64 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=47.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iPII 166 (780)
.|+|||-...+...+...|++.|+++..+.... .++.+.. ..+|.||+-= -|...+. +.+.|+.. ....+||+
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~~~~~-~~~~i~~~-~~~~~Pil 76 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLENTGN-CEKVLEHY-DEFNVPIL 76 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTTCCTT-HHHHHHTG-GGTCSCEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChhhhhh-HHHHHHHH-hhCCCeEE
Confidence 399999888778889999999999888766543 2333433 3588777632 2222221 24444422 12457888
Q ss_pred EEec
Q 004001 167 MMSS 170 (780)
Q Consensus 167 vLSa 170 (780)
-+..
T Consensus 77 GIC~ 80 (189)
T 1wl8_A 77 GICL 80 (189)
T ss_dssp EETH
T ss_pred EEcH
Confidence 7753
No 309
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=36.04 E-value=1.4e+02 Score=32.19 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-C----CCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-P----CLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-M-P----~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
.+.+..+-+..+..|. .+.+.++|..+++ ...|.|.+.. . . ...-++++..|++. ...++|||+-.+-
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~-~~~~ipvia~GGI 289 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQ---HGAAGIIVSNHGARQLDYVPATIMALEEVVKA-AQGRIPVFLDGGV 289 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHH---TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHH-TTTSSCEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHH---cCCCEEEECCCCCccCCCcccHHHHHHHHHHH-hCCCCEEEEECCC
Confidence 3456666666666554 4667777766665 3578888743 1 1 12356778888643 2347999999999
Q ss_pred CCHHHHHHHHHCCCCeEEe-CCC
Q 004001 172 DSMGLVFKCLSKGAVDFLV-KPI 193 (780)
Q Consensus 172 ~~~e~~~~al~aGAddyL~-KP~ 193 (780)
....++.+++.+||+.++. .|+
T Consensus 290 ~~~~D~~k~l~~GAdaV~iGr~~ 312 (370)
T 1gox_A 290 RRGTDVFKALALGAAGVFIGRPV 312 (370)
T ss_dssp CSHHHHHHHHHHTCSEEEECHHH
T ss_pred CCHHHHHHHHHcCCCEEeecHHH
Confidence 9999999999999999865 344
No 310
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=35.78 E-value=1.8e+02 Score=30.26 Aligned_cols=81 Identities=6% Similarity=-0.065 Sum_probs=52.1
Q ss_pred ccEEEEEeCCHH----HHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 87 SLKVLLVENDDS----TRHVVAALLRNC--GYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 87 ~lrVLIVDDD~~----~r~~L~~lL~~~--GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
.-+|.||-++.. ....++..|+.. |++|+. ..+....+..++. ..+|+||+.. .+.+...+++.
T Consensus 142 ~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~--~~~d~v~~~~-~~~~~~~~~~~ 218 (387)
T 3i45_A 142 ITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQ--AEPEGLFNVL-FGADLPKFVRE 218 (387)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHH--TCCSEEEECC-CTTHHHHHHHH
T ss_pred CCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHh--CCCCEEEEcC-ccHHHHHHHHH
Confidence 346776654433 345567777777 787652 1356677777776 6799999875 23356778888
Q ss_pred HHhhcCCCCccEEEEec
Q 004001 154 IMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa 170 (780)
+++......++|+....
T Consensus 219 ~~~~g~~~~~~i~~~~~ 235 (387)
T 3i45_A 219 GRVRGLFAGRQVVSMLT 235 (387)
T ss_dssp HHHHTSSTTCEEEEEEE
T ss_pred HHHcCCCCCCeEEeecC
Confidence 87766545577765543
No 311
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=35.69 E-value=51 Score=31.71 Aligned_cols=76 Identities=29% Similarity=0.363 Sum_probs=45.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEcc--CCCCCH--HHHHHHHHhhcCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV--MPCLSG--VALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg---~eALe~L~~~~~~pDLVLlDi--MP~mdG--leLl~~IRs~~~~ 160 (780)
++|||||.-..+-..+.+.|++.|+++..+... ++..+.+.. ...+++||+-= -|...+ .++++.+ .
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~-~~~~~iil~gGpg~~~~~~~~~~l~~~~-----~ 74 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLAT-MKNPVLMLSPGPGVPSEAGCMPELLTRL-----R 74 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTT-CSSEEEEECCCSSCGGGSTTHHHHHHHH-----B
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhh-ccCCeEEECCCCcCchhCchHHHHHHHH-----h
Confidence 379999976667778889999999998877654 444444432 12345665432 122222 2233332 2
Q ss_pred CCccEEEEe
Q 004001 161 KNLPVIMMS 169 (780)
Q Consensus 161 ~~iPIIvLS 169 (780)
..+||+-+.
T Consensus 75 ~~~PilGIC 83 (192)
T 1i1q_B 75 GKLPIIGIC 83 (192)
T ss_dssp TTBCEEEET
T ss_pred cCCCEEEEC
Confidence 458888765
No 312
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=35.35 E-value=70 Score=30.50 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCEEE---EECCHHHHHH-HHHh--cCCCceEEEEcc
Q 004001 97 DSTRHVVAALLRNCGYEVT---EATNGLQAWK-ILED--LTNHIDLVLTEV 141 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~---~A~dg~eALe-~L~~--~~~~pDLVLlDi 141 (780)
..+...|..+|+++||+|. ++.|..+.+. .+.. ....+||||+-=
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 3566789999999999876 5666555443 3321 124689999864
No 313
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=35.23 E-value=1.9e+02 Score=31.11 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-----C-CCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 99 TRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-----M-PCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-----M-P~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
..+.|+.+-+..+.-|+ .+.+.++|..+.+ ...|.|.+.- + -+..-++++.+|++.- ...+|||+-.+
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GG 292 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIK---RGASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSG 292 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHH---TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSS
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH---cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECC
Confidence 34556555555555443 4678888776665 3578888742 1 1234578888886532 23699999999
Q ss_pred CCCHHHHHHHHHCCCCeEEe-CCC
Q 004001 171 LDSMGLVFKCLSKGAVDFLV-KPI 193 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~-KP~ 193 (780)
-....++.+++.+||+.++. .|+
T Consensus 293 I~~g~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 293 VRRGEHVAKALASGADVVALGRPV 316 (368)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCCHHHHHHHHHcCCCEEEECHHH
Confidence 99999999999999999865 354
No 314
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=35.21 E-value=49 Score=33.98 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=54.4
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCccEEEEecCC
Q 004001 103 VAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMMSSLD 172 (780)
Q Consensus 103 L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~--~~~~iPIIvLSa~~ 172 (780)
+.+.+++.|..+-.+-+...-++.++..-..+|+|++=. -|+..| ++-+++||+.. ...+++| .+.+--
T Consensus 126 ~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I-~VDGGI 204 (246)
T 3inp_A 126 SLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILL-EIDGGV 204 (246)
T ss_dssp HHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEE-EEESSC
T ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeE-EEECCc
Confidence 334457778776654433222222221112468777644 677655 34455555421 1234544 455555
Q ss_pred CHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHH
Q 004001 173 SMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHV 205 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~l 205 (780)
..+.+..+.++||+-++. +--++.+-...|+..
T Consensus 205 ~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~ 242 (246)
T 3inp_A 205 NPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDE 242 (246)
T ss_dssp CTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHH
Confidence 677888999999999875 333555544444443
No 315
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=35.11 E-value=1.7e+02 Score=31.46 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=52.6
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLV-ENDDSTRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIV-DDD~~~r~~L~~lL~~~GyeV~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
++|+++ .+++..++.+..++... -.|..+. ...+...++.. .|+||.+. .|+. ++. ....+|
T Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~----ad~vv~~S----Gg~~-~EA-----~a~g~P 322 (403)
T 3ot5_A 258 TELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRK----SYLVFTDS----GGVQ-EEA-----PGMGVP 322 (403)
T ss_dssp EEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHH----EEEEEECC----HHHH-HHG-----GGTTCC
T ss_pred ceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC----ccHH-HHH-----HHhCCC
Confidence 445544 44454455554443221 1233332 23345555543 46666552 1222 222 235689
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+|++-...... +.++.| ..++..+ +.++|...|..++.
T Consensus 323 vV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 323 VLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp EEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred EEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 98763322222 235677 5777766 99999999998874
No 316
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=35.07 E-value=78 Score=33.03 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN--GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~d--g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
++.+||.||.--..-...+..+.+..+++++.+.+ .+.+-+..+. ....-+..| --++ |. . ++
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~--~~~~~~~~~------~~~l---l~-~---~~ 67 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE--LAIPVAYGS------YEEL---CK-D---ET 67 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH--TTCCCCBSS------HHHH---HH-C---TT
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH--cCCCceeCC------HHHH---hc-C---CC
Confidence 45678999887665555555554445777774433 2333333333 111101111 1122 21 1 22
Q ss_pred ccEEEEec--CCCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 163 LPVIMMSS--LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 163 iPIIvLSa--~~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+-+|++.. ....+.+..|+++|..-|+-||+ +.+++..++..+
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a 114 (330)
T 3e9m_A 68 IDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIA 114 (330)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 33444433 33355677889999999999996 456666655543
No 317
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=35.05 E-value=2e+02 Score=34.54 Aligned_cols=109 Identities=9% Similarity=0.188 Sum_probs=71.9
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHHHhcCCCceEEEEccCCCCCHHH
Q 004001 88 LKVLLVENDD----------STRHVVAALLRNCGY--EVTEAT---N---GLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149 (780)
Q Consensus 88 lrVLIVDDD~----------~~r~~L~~lL~~~Gy--eV~~A~---d---g~eALe~L~~~~~~pDLVLlDiMP~mdGle 149 (780)
++++||.+.+ .....+..++++.+. .|.... + ..+...++.. ..|++++=...+.-|+-
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~~Egfglv 680 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPALYEAFGLT 680 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCSCBSSCHH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCCccCccHH
Confidence 5778887766 255667777777765 354443 2 2455555543 24777764333445778
Q ss_pred HHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 150 LLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+++.+. ..+|||+ |... ...+.+..|..+++..|.++++|..+|..++.+
T Consensus 681 llEAMA-----~G~PVIa-sd~G---G~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~ 730 (816)
T 3s28_A 681 VVEAMT-----CGLPTFA-TCKG---GPAEIIVHGKSGFHIDPYHGDQAADTLADFFTK 730 (816)
T ss_dssp HHHHHH-----TTCCEEE-ESSB---THHHHCCBTTTBEEECTTSHHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCCEEE-eCCC---ChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 888873 3578876 4332 234556778899999999999999999887743
No 318
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=34.97 E-value=84 Score=34.72 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=33.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEcc
Q 004001 87 SLKVLLVENDD---STRHVVAALLRNCGYEVTEAT---NGL----QAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 87 ~lrVLIVDDD~---~~r~~L~~lL~~~GyeV~~A~---dg~----eALe~L~~~~~~pDLVLlDi 141 (780)
+.+|||||-|+ .....+...-...|+.++.+. +.. ++++.+.. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 78999999996 333334334445577776543 222 34555543 4799999998
No 319
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=34.83 E-value=1.5e+02 Score=29.43 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhcCCCceEE-EEcc-CCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLV-LTEV-MPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLV-LlDi-MP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+..+.+.+ ...|.| |.|. .... ..+++++.|++ ...+||++.-.-.+.+.+.+++++||+.++.
T Consensus 31 d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~---~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 31 DPVELGKFYSE--IGIDELVFLDITASVEKRKTMLELVEKVAE---QIDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESSCSSSHHHHHHHHHHHHHT---TCCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHH--cCCCEEEEECCchhhcCCcccHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555555554 345544 4443 2211 13566777764 2468999988888888999999999998876
No 320
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=34.76 E-value=34 Score=33.93 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=47.9
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCccEEEEe
Q 004001 103 VAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMMS 169 (780)
Q Consensus 103 L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~--~~~~iPIIvLS 169 (780)
+.+.++..|..+.. + .+..+.++.+. ...|.|+++. .|+..| ++.+++||+.. ...++||++.-
T Consensus 110 ~~~~~~~~g~~ig~~~~p~t~~e~~~~~~---~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~G 186 (230)
T 1rpx_A 110 TINQIKSLGAKAGVVLNPGTPLTAIEYVL---DAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDG 186 (230)
T ss_dssp HHHHHHHTTSEEEEEECTTCCGGGGTTTT---TTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---hhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 33444455666553 3 23334443332 3478898887 675543 45556665432 01257776554
Q ss_pred cCCCHHHHHHHHHCCCCeEEe
Q 004001 170 SLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 170 a~~~~e~~~~al~aGAddyL~ 190 (780)
+- ..+.+.+++++||+.++.
T Consensus 187 GI-~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 187 GV-GPKNAYKVIEAGANALVA 206 (230)
T ss_dssp SC-CTTTHHHHHHHTCCEEEE
T ss_pred CC-CHHHHHHHHHcCCCEEEE
Confidence 44 466777789999998865
No 321
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=34.63 E-value=1e+02 Score=27.77 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=44.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
+|..||-++...+..+..+...+..+. ...+..+.+..+......||+|+++. .. .+-.++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 489999999999999888887765444 34566665544433123699999997 43 33345666664
No 322
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=34.59 E-value=2.7e+02 Score=30.67 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATN---G----LQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~d---g----~eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+|++-|.. ....|..+-+..|+.++.... . .++++.++. ..+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~--~~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEcC
Confidence 4678999998743 333344444456777776532 2 234444433 5799999997
No 323
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=34.59 E-value=2.8e+02 Score=30.69 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCHHHHHHHHHhhcCCCCc
Q 004001 99 TRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 99 ~r~~L~~lL~~~-GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------------~mdGleLl~~IRs~~~~~~i 163 (780)
..+.+..+-+.. ++.|. .+.+.++|..+.+ ..+|.|.+..-+ +...++++..++.......+
T Consensus 265 ~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~---~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 265 VIETLEMIKADYPDLPVVAGNVATPEGTEALIK---AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH---cCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 445555555554 44443 4667777755554 347877763211 12334555555432222479
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
|||+-.+-.+...+.+++.+||+.+..
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 999988888999999999999988764
No 324
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=34.35 E-value=1.6e+02 Score=30.51 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=54.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALL-RNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL-~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
+.++|.||---..-...+..++ ...+++++ .+..-.+.++.+.+. ...+.++.|+ -+.|. . +.+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~~~---------~~~l~-~---~~~ 72 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTNY---------KDMID-T---ENI 72 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEESCH---------HHHHT-T---SCC
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccCCH---------HHHhc-C---CCC
Confidence 5678999987655554455444 23477765 444444444444331 1222222221 11221 1 233
Q ss_pred cEEEEecCC--CHHHHHHHHHCCCCeEEeCCCC--HHHHHHHHH
Q 004001 164 PVIMMSSLD--SMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQ 203 (780)
Q Consensus 164 PIIvLSa~~--~~e~~~~al~aGAddyL~KP~~--~eeL~~~L~ 203 (780)
-+|+++... ..+.+..++++|..-|+-||+. .++...++.
T Consensus 73 D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~ 116 (346)
T 3cea_A 73 DAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAK 116 (346)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHH
T ss_pred CEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHH
Confidence 444444332 3456778889998778889964 556555443
No 325
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=34.17 E-value=99 Score=28.69 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=40.5
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+.+|.++.... ...+|...|+.+..+.+..+++.+|.. ..+|+++++.
T Consensus 109 dL~g~~i~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~--g~~D~~~~~~ 159 (228)
T 2pyy_A 109 DLPGKVVATTAGST-----AATYLREHHISVLEVPKIEEAYKALQT--KKADAVVFDA 159 (228)
T ss_dssp GCTTCEEEEETTSH-----HHHHHHHTTCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred HcCCCeEEEEcCcH-----HHHHHHHcCCceEecCCHHHHHHHHHc--CCCCEEEecH
Confidence 45677888887665 234566678999999999999999987 7899999874
No 326
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=34.07 E-value=35 Score=34.96 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHC--CCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSK--GAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 144 ~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~a--GAddyL~KP~~~eeL~~~L~~llr 207 (780)
+.-|+-+++.+. ..+|||+. ... ...+.+.. |..+|+..| +.++|...|..++.
T Consensus 252 E~~~~~~~EAma-----~G~PvI~s-~~~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 252 EPGATVVSEAAV-----SGTPVVGT-GNG---CLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp CCCCHHHHHHHH-----TTCCEEEC-CTT---THHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHh-----cCCCEEEc-CCC---ChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 344667777773 35777653 322 24455666 778899999 99999999887653
No 327
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.01 E-value=1.1e+02 Score=30.15 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 100 RHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
...+...+++.||.+..+.. .. +.++.+.. ..+|.||+-......-.++++++++ ..+|||++-...
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~~~~~~~~~~~~----~~iPvV~~~~~~ 99 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVH--LKVDAIFITTLDDVYIGSAIEEAKK----AGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH--TTCSEEEEECSCTTTTHHHHHHHHH----TTCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChHHHHHHHHHHHH----cCCCEEEecCCC
Confidence 44566667788998886543 22 35555554 5789888754211122356777743 368999886543
No 328
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=33.95 E-value=40 Score=33.29 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye---V~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++......+..++..|+. |. ...+..+.+..+. ...||+||+|. .+. -.++++.+.
T Consensus 82 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~~ 150 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAAW 150 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHHH
Confidence 47999999999999999999988875 55 4455555544332 25799999997 543 233555543
No 329
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=33.93 E-value=47 Score=36.15 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=61.8
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------hcCCCceEEEEccCC
Q 004001 88 LKVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKILE-------------------DLTNHIDLVLTEVMP 143 (780)
Q Consensus 88 lrVLIVD--DD~~~---r~~L~~lL~~~GyeV~~A~dg~eALe~L~-------------------~~~~~pDLVLlDiMP 143 (780)
.+|+||- .++.+ ...|...|...|++|+.-....+.+.... .....+|+||+ -
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---l 115 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---L 115 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE---E
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE---E
Confidence 3789985 33333 34456666677999986554444332221 01135677765 3
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 144 CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 144 ~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
|.||. +|+..+.. ....+|||-+.. |-.+||. ++.++++..+|.++++.
T Consensus 116 GGDGT-~L~aa~~~-~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 116 GGDGT-LLYASSLF-QGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEG 164 (365)
T ss_dssp SSTTH-HHHHHHHC-SSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHS
T ss_pred cChHH-HHHHHHHh-ccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcC
Confidence 56773 33333321 234689887753 5567887 88889999999998864
No 330
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.67 E-value=59 Score=31.95 Aligned_cols=68 Identities=9% Similarity=0.016 Sum_probs=46.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCCC--------CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCC
Q 004001 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPCL--------SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 116 ~A~dg~eALe~L~~~~~~pDLVLlDi-MP~m--------dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAd 186 (780)
.+.+.+++.... . ..|.|+++. .|.. -|++.+++++... ...+|||++-+-. .+.+.+++++|++
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 677888876553 2 378898876 4422 3678888885421 1468999887765 6678889999999
Q ss_pred eEE
Q 004001 187 DFL 189 (780)
Q Consensus 187 dyL 189 (780)
++-
T Consensus 168 gVa 170 (210)
T 3ceu_A 168 GAV 170 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 331
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=33.50 E-value=1.6e+02 Score=30.87 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNC--GYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~--GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
.+.+||.||---..........|... +++++ +++.-.+..+.+.+. ....-+..|+ -++ |. . +
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~~~~~~~~~~------~~l---l~-~---~ 81 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM-VGNPAVFDSY------EEL---LE-S---G 81 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH-HSSCEEESCH------HHH---HH-S---S
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH-hCCCcccCCH------HHH---hc-C---C
Confidence 45689999987733333333444443 57776 444333333333321 1111223221 122 21 1 2
Q ss_pred CccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 162 NLPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 162 ~iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
++-+|+++.. .-.+.+.+|+++|..=|+-||+ +.++...++..+
T Consensus 82 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 129 (340)
T 1zh8_A 82 LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS 129 (340)
T ss_dssp CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 3444444433 3356788899999999999997 677777666554
No 332
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=33.47 E-value=8.9 Score=41.38 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=18.1
Q ss_pred CCHHhHHHHHHHHHhhhc--c-------cCCCCccchhhhhhhhhhCC
Q 004001 720 NKFADREAAVTKYRQKKT--E-------RCFRKKVRYQSRKRLAEQRP 758 (780)
Q Consensus 720 ~~~~~r~~~~~~~~~k~~--~-------r~~~k~i~y~~rk~~a~~r~ 758 (780)
...+...+.|..|-..+= + .+|+.=+.| ++++++-.+
T Consensus 99 ~~~~~i~~~v~~~i~~~lpg~~a~~~al~L~~rYl~Y--k~AL~~L~~ 144 (332)
T 2es4_D 99 LTPAALDALVRREIAAQLDGSPAQAEALGVWRRYRAY--FDALAQLPG 144 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HHTTC----
T ss_pred CCHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH--HHHHHhccc
Confidence 345666777766654443 1 356555555 455555444
No 333
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=33.34 E-value=1.2e+02 Score=30.34 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCEEEEECC-----HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYEVTEATN-----GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~d-----g~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...+++.||.+..+.. ..+.++.+.. ..+|-||+-. .... +.++.++. ..+|||++-..
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~~---~~~~~l~~----~~iPvV~~~~~ 97 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET--RRVDALIVAHTQPED---FRLQYLQK----QNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH--TCCSEEEECSCCSSC---HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc--CCCCEEEEeCCCCCh---HHHHHHHh----CCCCEEEECCC
Confidence 44456667778998875432 2456677765 5788887754 3222 56666643 35888888653
No 334
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=33.27 E-value=9 Score=41.74 Aligned_cols=11 Identities=0% Similarity=0.392 Sum_probs=6.7
Q ss_pred HHHHHHHHhhh
Q 004001 726 EAAVTKYRQKK 736 (780)
Q Consensus 726 ~~~~~~~~~k~ 736 (780)
+..|.+|.++-
T Consensus 81 ~~~i~~F~~~~ 91 (456)
T 4g68_A 81 KEIIDQWNKEN 91 (456)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 34567787654
No 335
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=33.24 E-value=45 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLl 139 (780)
+|+|||=-.-+...+...|++.|+++..+.+.++ +.. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~----l~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQV----VLA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH----HHH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH----HhC----CCEEEE
Confidence 6999997666677888999999999998888654 332 577765
No 336
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=33.21 E-value=2.2e+02 Score=31.74 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCC-CHHHHHHHHHhhcCCCCccEEEEecCCCHH
Q 004001 100 RHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCL-SGVALLSKIMSHKTRKNLPVIMMSSLDSMG 175 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDi--MP~m-dGleLl~~IRs~~~~~~iPIIvLSa~~~~e 175 (780)
...|....+.+|..+. .+.+.+|+...+.. .+|+|-+.. +-.. --++.+.+|...- ..++++|.-++-...+
T Consensus 146 l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~dl~~~~~L~~~i-p~~~~vIaEsGI~t~e 221 (452)
T 1pii_A 146 YRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSIDLNRTRELAPKL-GHNVTVISESGINTYA 221 (452)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEECTHHHHHHHHHH-CTTSEEEEESCCCCHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCCHHHHHHHHHhC-CCCCeEEEECCCCCHH
Confidence 3445555567899876 78999998877764 578887764 3221 1155555554321 2467788888889999
Q ss_pred HHHHHHHCCCCeEEe-----CCCCHHH
Q 004001 176 LVFKCLSKGAVDFLV-----KPIRKNE 197 (780)
Q Consensus 176 ~~~~al~aGAddyL~-----KP~~~ee 197 (780)
++.++.++ ++.||+ |+-++.+
T Consensus 222 dv~~~~~~-a~avLVGealmr~~d~~~ 247 (452)
T 1pii_A 222 QVRELSHF-ANGFLIGSALMAHDDLHA 247 (452)
T ss_dssp HHHHHTTT-CSEEEECHHHHTCSCHHH
T ss_pred HHHHHHHh-CCEEEEcHHHcCCcCHHH
Confidence 99999999 999985 5655544
No 337
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.18 E-value=72 Score=30.31 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=21.2
Q ss_pred CceEEEEcc-CCCCCH-----------HHHHHHHHhhcCCCCccEEEEecC
Q 004001 133 HIDLVLTEV-MPCLSG-----------VALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 133 ~pDLVLlDi-MP~mdG-----------leLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
.+++||+|. ...++. .++++.|+.......++||+++..
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 499999997 333332 234444433221225677776654
No 338
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=33.00 E-value=2.8e+02 Score=27.24 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+.. .. +.++.+.. ..+|.||+-. .+. .-.++++++++ ..+|||++-..
T Consensus 20 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 92 (290)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA--AGYDAIIFNPTDAD-GSIANVKRAKE----AGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH-HHHHHHHHHHH----CCCeEEEEecC
Confidence 344566677788998876542 22 34555554 5789888744 222 12345666643 35899888543
No 339
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=32.97 E-value=1.9e+02 Score=32.87 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCceEEE-Ecc-CCCC-C--HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHH-CCCCeEEe----
Q 004001 121 LQAWKILEDLTNHIDLVL-TEV-MPCL-S--GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLS-KGAVDFLV---- 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVL-lDi-MP~m-d--GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~-aGAddyL~---- 190 (780)
.+..+.+.+ ..++.|| .++ -.++ . -++++++|++. ..+|||+--.-.+.+.+.++++ .|+++.+.
T Consensus 455 ~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~ 529 (555)
T 1jvn_A 455 WELTRACEA--LGAGEILLNCIDKDGSNSGYDLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 529 (555)
T ss_dssp HHHHHHHHH--TTCCEEEECCGGGTTTCSCCCHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 344455544 3355454 454 2222 2 37899999753 3689998888888999999998 89999875
Q ss_pred --CCCCHHHHHHHH
Q 004001 191 --KPIRKNELKNLW 202 (780)
Q Consensus 191 --KP~~~eeL~~~L 202 (780)
.++...+++..+
T Consensus 530 ~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 530 HRGEFTVNDVKEYL 543 (555)
T ss_dssp HTTSCCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 588888887754
No 340
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=32.90 E-value=49 Score=32.00 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CC--CCCHHHHHHHHHhhcCCCCccEEE--EecCCCHHHHHHHHHCCCCeEEeCCC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MP--CLSGVALLSKIMSHKTRKNLPVIM--MSSLDSMGLVFKCLSKGAVDFLVKPI 193 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP--~mdGleLl~~IRs~~~~~~iPIIv--LSa~~~~e~~~~al~aGAddyL~KP~ 193 (780)
+.+++++.++......|+ +++ ++ -..|.++++.||+. .++.||++ +........+..+.++||+.+..-+.
T Consensus 11 ~~~~~~~~~~~~~~~v~~--iev~~~~~~~~g~~~i~~l~~~--~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 11 STEAALELAGKVAEYVDI--IELGTPLIKAEGLSVITAVKKA--HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp CHHHHHHHHHHHGGGCSE--EEECHHHHHHHCTHHHHHHHHH--STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhccCCE--EEECcHHHHhhCHHHHHHHHHh--CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 556666666542221233 444 33 13577889999764 34677774 44321233477899999998876666
Q ss_pred CH-HHHHHH
Q 004001 194 RK-NELKNL 201 (780)
Q Consensus 194 ~~-eeL~~~ 201 (780)
.. ..+..+
T Consensus 87 ~~~~~~~~~ 95 (207)
T 3ajx_A 87 ADDSTIAGA 95 (207)
T ss_dssp SCHHHHHHH
T ss_pred CChHHHHHH
Confidence 54 444433
No 341
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=32.12 E-value=3.8e+02 Score=28.61 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=54.2
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcC--CCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 114 VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKT--RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 114 V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~--~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+...-...+.++.+.. ..+|.||+|+ -.-.+--.+...|+.... ....++++=+...+...+..++++|++.++.
T Consensus 46 ~~l~i~~p~~~e~a~~--~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIml 123 (339)
T 1izc_A 46 VAHGIPSTFVTKVLAA--TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVI 123 (339)
T ss_dssp EEECSCCHHHHHHHHH--TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHh--CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEe
Confidence 3333334455566655 5699999998 322233344444443221 1125666666666778889999999987544
Q ss_pred -CCCCHHHHHHHHHH
Q 004001 191 -KPIRKNELKNLWQH 204 (780)
Q Consensus 191 -KP~~~eeL~~~L~~ 204 (780)
|=-+.+++..++..
T Consensus 124 P~V~saee~~~~~~~ 138 (339)
T 1izc_A 124 PHVETVEEVREFVKE 138 (339)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 44568888776555
No 342
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=32.10 E-value=1.4e+02 Score=31.06 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 174 MGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
.+.+..++++|..=|+-||+ +.++...++..+
T Consensus 78 ~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a 111 (344)
T 3ezy_A 78 SELVIACAKAKKHVFCEKPLSLNLADVDRMIEET 111 (344)
T ss_dssp HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34566777888777778884 555655554443
No 343
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=32.00 E-value=1e+02 Score=33.36 Aligned_cols=65 Identities=15% Similarity=-0.009 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+.++.+.+ ..+|+|.+|. ..... -++++++||+. .+.+|||+= .-...+.+..+.++|||.+.+
T Consensus 102 ~e~~~~a~~--aGvdvI~id~a~G~~~~~~e~I~~ir~~--~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRD--AGADFFCVDVAHAHAKYVGKTLKSLRQL--LGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHH--TTCCEEEEECSCCSSHHHHHHHHHHHHH--HTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcHhHHHHHHHHHHh--cCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 344555554 4689999997 53222 25788888764 256787761 123567888999999988875
No 344
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=31.96 E-value=1.4e+02 Score=29.50 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=47.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~---~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++......+..++..|+ .|. ...+..+.+..+... ...||+||+|. .+. -.++++.+.
T Consensus 96 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~--~~~~l~~~~ 168 (237)
T 3c3y_A 96 GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPN--YIKYHERLM 168 (237)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGG--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHH--HHHHHHHHH
Confidence 4799999999999999999998887 244 567777777655321 25799999997 432 244555553
No 345
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=31.66 E-value=1.3e+02 Score=30.32 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+.. .. +.++.+.. ..+|.||+.. .+. .-.++++++++ ..+|||++-..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 92 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ-VLSNVVKEAKQ----EGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSSTT-SCHHHHHHHHT----TTCEEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh-hhHHHHHHHHH----CCCeEEEECCc
Confidence 455667777788988775432 22 34555544 5688777754 222 12356666643 35888887654
No 346
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=31.40 E-value=61 Score=36.05 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=63.3
Q ss_pred eCCHHHHHHHHHHHHhCCC--EEE----EEC-----------------------CHHHHHHHHHhcCCCceEEEEcc-CC
Q 004001 94 ENDDSTRHVVAALLRNCGY--EVT----EAT-----------------------NGLQAWKILEDLTNHIDLVLTEV-MP 143 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~Gy--eV~----~A~-----------------------dg~eALe~L~~~~~~pDLVLlDi-MP 143 (780)
+++....+.++..++..|| +|. .+. +..++++++.+.-..|+|+++.- ++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566677788888876665 222 211 45777666543213478999988 76
Q ss_pred CCCHHHHHHHHHhhcCCCCccEEEEecC---CCHHHHHHHHHCCCCe-EEeCCCCHHHHHHHH
Q 004001 144 CLSGVALLSKIMSHKTRKNLPVIMMSSL---DSMGLVFKCLSKGAVD-FLVKPIRKNELKNLW 202 (780)
Q Consensus 144 ~mdGleLl~~IRs~~~~~~iPIIvLSa~---~~~e~~~~al~aGAdd-yL~KP~~~eeL~~~L 202 (780)
..| ++-.++|++. ..+||+ ... .....+.++++.++.+ +++|+-..--|..++
T Consensus 297 ~dD-~~g~~~L~~~---~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~ 353 (439)
T 2akz_A 297 QDD-WAAWSKFTAN---VGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAI 353 (439)
T ss_dssp TTC-HHHHHHHHHT---CSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHH
T ss_pred ccc-HHHHHHHHhC---CCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHH
Confidence 654 6667777654 346764 443 2567888899999655 556775443444443
No 347
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=31.37 E-value=1.1e+02 Score=34.38 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 120 GLQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDi-MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..+.++.+.+ ..+|+|.+|. .+... -++++++|++. .+++|||+- .-...+.+..+.++||+.+..
T Consensus 230 ~~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~v~~i~~~--~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 230 TGERVAALVA--AGVDVVVVDTAHGHSKGVIERVRWVKQT--FPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHH--TTCSEEEEECSCCSBHHHHHHHHHHHHH--CTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhh--cccceEEecccCCcchhHHHHHHHHHHH--CCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 3444455544 4689999998 65432 35788888754 357787763 234567888999999988875
No 348
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=31.26 E-value=72 Score=34.96 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=39.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--C----CE---E-EEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC--G----YE---V-TEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~--G----ye---V-~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+|-+||=|+.+.++.+..|... + .+ | +...|+.+.++...+....||+||+|+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl 292 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDL 292 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEEC
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECC
Confidence 47899999999999988887432 1 12 3 367888888876644346799999997
No 349
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=31.13 E-value=1.8e+02 Score=25.68 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=44.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCC-HHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLS-GVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~d-g~eALe~L~~~~~~pDLVLlDiMP~md-GleLl~~IRs~~~~~~iP 164 (780)
+..|+++|.++...+.+ ...|+.+....- -.+.|+.+. ...+|+||+-. |+.. -+.++..+++. . ...
T Consensus 29 g~~V~~id~~~~~~~~~----~~~~~~~~~gd~~~~~~l~~~~--~~~~d~vi~~~-~~~~~n~~~~~~a~~~--~-~~~ 98 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELL----EDEGFDAVIADPTDESFYRSLD--LEGVSAVLITG-SDDEFNLKILKALRSV--S-DVY 98 (141)
T ss_dssp TCCEEEEESCHHHHHHH----HHTTCEEEECCTTCHHHHHHSC--CTTCSEEEECC-SCHHHHHHHHHHHHHH--C-CCC
T ss_pred CCeEEEEECCHHHHHHH----HHCCCcEEECCCCCHHHHHhCC--cccCCEEEEec-CCHHHHHHHHHHHHHh--C-Cce
Confidence 45677777776544333 234555543321 122333321 13577777543 3211 23344455433 2 345
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
||+.... ......+.++|++..+.
T Consensus 99 iia~~~~--~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 99 AIVRVSS--PKKKEEFEEAGANLVVL 122 (141)
T ss_dssp EEEEESC--GGGHHHHHHTTCSEEEE
T ss_pred EEEEEcC--hhHHHHHHHcCCCEEEC
Confidence 5555543 33455667889865553
No 350
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=31.13 E-value=2.1e+02 Score=30.88 Aligned_cols=86 Identities=8% Similarity=0.010 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCEEE--EE---CCHHHHHHHHHhcCCCceEEEEccCC---------------------CCCHHHHHHH
Q 004001 100 RHVVAALLRNCGYEVT--EA---TNGLQAWKILEDLTNHIDLVLTEVMP---------------------CLSGVALLSK 153 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~--~A---~dg~eALe~L~~~~~~pDLVLlDiMP---------------------~mdGleLl~~ 153 (780)
.+.|+.+-+..+.-|. .+ .+.++|..+.+. .+|.|.++--. +...++++..
T Consensus 195 ~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~ 271 (365)
T 3sr7_A 195 KKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN 271 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCBC--------------CGGGTTCSCBHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHH
Confidence 3556666666665444 33 466777666653 57777764211 1223455555
Q ss_pred HHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 154 IMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
++. ....+|||+-.+-.+..++.+++.+||+.+..
T Consensus 272 v~~--~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 272 AQP--LMDKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HGG--GTTTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHH--hcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 533 23478999888888999999999999999765
No 351
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=31.12 E-value=3.2e+02 Score=27.37 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=49.6
Q ss_pred HHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCC--HHH----HHHHHHCCCCeEEe-----CCC
Q 004001 125 KILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDS--MGL----VFKCLSKGAVDFLV-----KPI 193 (780)
Q Consensus 125 e~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~--~e~----~~~al~aGAddyL~-----KP~ 193 (780)
+.+.+ ...|+|.+.. + -+++++++|++. ..+|||+..+-.. .+. +.+++++|+++++. +.-
T Consensus 173 ~~a~~--~Gad~i~~~~-~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~ 244 (273)
T 2qjg_A 173 RLGAE--LGADIVKTSY-T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHD 244 (273)
T ss_dssp HHHHH--TTCSEEEECC-C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSS
T ss_pred HHHHH--cCCCEEEECC-C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCC
Confidence 44444 4578888764 2 368888888653 2689999887663 444 66677899998864 333
Q ss_pred CHHHHHHHHHHHHHH
Q 004001 194 RKNELKNLWQHVWRR 208 (780)
Q Consensus 194 ~~eeL~~~L~~llrr 208 (780)
++.+....+..++++
T Consensus 245 ~~~~~~~~l~~~~~~ 259 (273)
T 2qjg_A 245 DVVGITRAVCKIVHE 259 (273)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 555555555555554
No 352
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.10 E-value=2e+02 Score=28.64 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHH-HHHHH
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVA-LLSKI 154 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~---------dg~eALe~L~~~~~~pDLVLlDiMP~mdGle-Ll~~I 154 (780)
..+.+||++--+. -+..|...|+..|++|..+. +..+..+.+.. ..+|+|++=- -.+++ +++.+
T Consensus 131 ~~~~~vL~~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~--~~~d~v~ftS---~s~v~~~~~~~ 204 (254)
T 4es6_A 131 VHDPKVLIMRGEG-GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRA--ERLNGLVVSS---GQGLQNLYQLA 204 (254)
T ss_dssp SSSCEEEEEECSS-CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHH--TTCCEEECCS---HHHHHHHHHHH
T ss_pred CCCCEEEEEcCCc-cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHh--CCCCEEEEcC---HHHHHHHHHHh
Confidence 4567899987653 46778888999998765321 23455666665 5688877521 12333 23333
Q ss_pred Hhh-cCCCCccEEEEecCCCHHHHHHHHHCCCCe-EEeCCCCHHHHHHHHHH
Q 004001 155 MSH-KTRKNLPVIMMSSLDSMGLVFKCLSKGAVD-FLVKPIRKNELKNLWQH 204 (780)
Q Consensus 155 Rs~-~~~~~iPIIvLSa~~~~e~~~~al~aGAdd-yL~KP~~~eeL~~~L~~ 204 (780)
... .....++++.+.. .....+.+.|... ++.+..+.+.|.++|.+
T Consensus 205 ~~~~~~l~~~~~~aIG~----~Ta~~l~~~G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 205 AADWPEIGRLPLFVPSP----RVAEMARELGAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp GGGHHHHTTSCEEESSH----HHHHHHHHTTCSSEEECSSSSHHHHHHHHHH
T ss_pred hHHHHHHhCCeEEEECH----HHHHHHHHcCCCceEECCCCCHHHHHHHHHh
Confidence 211 0124567776653 3455666788765 55787899999888765
No 353
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=30.88 E-value=62 Score=32.44 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=44.1
Q ss_pred CccEEEEEeCCH------HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 86 RSLKVLLVENDD------STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 86 ~~lrVLIVDDD~------~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
...+|+||+-.. .....+...|++.|+++..+....+..+.|.+ .|.|| +|+.+-..+++.|++
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~---lpGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIII---VGGGNTFQLLKESRE 99 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEE---ECCSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEE---ECCCcHHHHHHHHHH
Confidence 346899997542 66777888899999988877432233455554 46666 478777888887764
No 354
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=30.73 E-value=1.7e+02 Score=31.77 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=42.2
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 88 LKVLLVENDDS-----TRHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 88 lrVLIVDDD~~-----~r~~L~~lL~~~GyeV~~A~d---------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
-|+|||-|... ..+.+...|+..|+++..+.. ..++++.+++ ..+|+||- +-+.+-+++.+.
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGsviD~AK~ 119 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKK--EKVEAVLG--VGGGSVVDSAKA 119 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHH--TTCSEEEE--EESHHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHh--cCCCEEEE--eCChhHHHHHHH
Confidence 48999987543 245567778888888765542 3456666665 66888874 345455677776
Q ss_pred HHh
Q 004001 154 IMS 156 (780)
Q Consensus 154 IRs 156 (780)
+..
T Consensus 120 iA~ 122 (407)
T 1vlj_A 120 VAA 122 (407)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 355
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=30.67 E-value=2.2e+02 Score=28.46 Aligned_cols=63 Identities=6% Similarity=0.106 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...+++.||.+..+... .+.++.+.. ..+|-||+-. ... + ++++.++. ..+|||++-..
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~i~~~ 115 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS--KSVDGFILLYSLKD-D--PIEHLLNE----FKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT--TCCSEEEESSCBTT-C--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCcCC-c--HHHHHHHH----cCCCEEEECCC
Confidence 344556667789998865432 234555554 6789887753 222 1 56666643 35899988654
No 356
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=30.64 E-value=2.7e+02 Score=28.99 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
+..+.++.+.+ ..+|+|.+.. .| .+++++|++. .++|+... ...+....+.+.|+|.++.-
T Consensus 84 ~~~~~~~~~~~--~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIE--AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHh--cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 34577777776 5789999887 76 5788888653 46777543 34567778899999998873
No 357
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=30.59 E-value=2.8e+02 Score=29.10 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=58.9
Q ss_pred EEEEEeCCHHH----HHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 89 KVLLVENDDST----RHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 89 rVLIVDDD~~~----r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
.|||.|.+-.. ...+..+-+..+. -.+.+.+.+++.+.++. ..|+|.+|.| + ++.++++.+. ....
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~~---~-~e~l~~~v~~-~~~~ 252 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDNF---N-TDQMREAVKR-VNGQ 252 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESSC---C-HHHHHHHHHT-TCTT
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECCC---C-HHHHHHHHHH-hCCC
Confidence 36777666554 4455555554554 34478888888888763 5899999972 2 3444444332 2235
Q ss_pred ccEEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 163 LPVIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 163 iPIIvLSa~~~~e~~~~al~aGAddyL 189 (780)
++|. .++.-+.+.+....+.|+|.|-
T Consensus 253 ~~I~-ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 253 ARLE-VSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp CCEE-ECCCSCHHHHHHHHHTTCSEEE
T ss_pred CeEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 6554 5666688999999999996554
No 358
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.58 E-value=94 Score=31.66 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCceEEEEccCCCC---CHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 122 QAWKILEDLTNHIDLVLTEVMPCL---SGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 122 eALe~L~~~~~~pDLVLlDiMP~m---dGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
++++.+.+ ...|+|.+-.--++ +-++++++||+ .++|||+|+..... +..|+|++|.-
T Consensus 24 ~~~~~l~~--~GaD~IelG~S~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~------i~~gvDg~iip 84 (234)
T 2f6u_A 24 EIIKAVAD--SGTDAVMISGTQNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSN------VVYDVDYLFVP 84 (234)
T ss_dssp HHHHHHHT--TTCSEEEECCCTTCCHHHHHHHHHHHTT----SCCCEEECCSSCCC------CCCCSSEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhcC----CCCCEEEecCCcch------hhcCCCEEEEc
Confidence 34455544 45788888752222 34667777753 47999999988421 27899999875
No 359
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=30.53 E-value=1.3e+02 Score=31.82 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 171 LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
..-.+.+..|+++|..=|+-||+ +.+++.+++..+
T Consensus 94 ~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a 130 (383)
T 3oqb_A 94 QARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLA 130 (383)
T ss_dssp SSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHH
Confidence 34466778888999888888987 556666665544
No 360
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=30.47 E-value=1e+02 Score=32.30 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=58.4
Q ss_pred cCCccEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 84 HLRSLKVLLVENDDSTR-HVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r-~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
.|+.+||.||.--..-+ ..+..+...-+++|+.+.+... ..+.+-..+ +--+++.. .++
T Consensus 22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~---------~~~g~~~~~-----~~~~ll~~------~~~ 81 (330)
T 4ew6_A 22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG---------TVEGVNSYT-----TIEAMLDA------EPS 81 (330)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC---------CCTTSEEES-----SHHHHHHH------CTT
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh---------hhcCCCccC-----CHHHHHhC------CCC
Confidence 35678999999876665 3455544444778775444321 112211111 11222221 023
Q ss_pred ccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 163 LPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 163 iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
+-+|++... .-.+.+.+|+++|..=|+-||+ +.+++.+++..+-
T Consensus 82 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~ 129 (330)
T 4ew6_A 82 IDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALAN 129 (330)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 334444433 2345678899999999999997 6677776665543
No 361
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=30.46 E-value=2.3e+02 Score=28.84 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=55.0
Q ss_pred EEEEEeCCHH-HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 89 KVLLVENDDS-TRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 89 rVLIVDDD~~-~r~~L~~lL~~~GyeV~~A-------~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
.+++.+++.. -+.+...+.+..|.+|+.. .|....+..++. ..+|+||+-. ...+...+++++++..
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~-~~~~~~~~~~~~~~~g-- 220 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKG--KDFDAIVVPG-YYNEAGKIVNQARGMG-- 220 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHT--SCCSEEECCS-CHHHHHHHHHHHHHTT--
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEec-CcHHHHHHHHHHHHcC--
Confidence 3555565443 4445555556678776521 356677888876 6799998643 2335677888887643
Q ss_pred CCccEEEEecCCCHHHHHHHHH
Q 004001 161 KNLPVIMMSSLDSMGLVFKCLS 182 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al~ 182 (780)
...|++.............+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~ 242 (353)
T 4gnr_A 221 IDKPIVGGDGFNGEEFVQQATA 242 (353)
T ss_dssp CCSCEEECGGGCSHHHHHHHCT
T ss_pred CCCcEEEecccccchhhhhhhh
Confidence 4567777666666665555433
No 362
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=30.28 E-value=1.3e+02 Score=31.15 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=60.0
Q ss_pred eCCHHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCcc
Q 004001 94 ENDDSTRHVVAALLRNC-GYEVTE------ATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~-GyeV~~------A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~~iP 164 (780)
+|.......++.+++.. |+.|+. +.+..+||+.|.+ ..++=||+-= -.-.+|+++|++|.+.. .. +
T Consensus 97 ~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~--lG~~rILTSG~~~~a~~g~~~L~~Lv~~a--~~-i 171 (256)
T 1twd_A 97 VDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAE--LGIARVLTSGQKSDALQGLSKIMELIAHR--DA-P 171 (256)
T ss_dssp TTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHH--HTCCEEEECTTSSSTTTTHHHHHHHHTSS--SC-C
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHH--cCCCEEECCCCCCCHHHHHHHHHHHHHhh--CC-c
Confidence 34445566677777543 677764 6899999999987 4689899874 34578999999996542 22 3
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL 189 (780)
.||.-+--..+.+...+..|+..|-
T Consensus 172 ~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 172 IIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp EEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred EEEecCCcCHHHHHHHHHcCCCeEe
Confidence 3444444444445555567777665
No 363
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=30.18 E-value=1.6e+02 Score=30.33 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+++++||+. .++||++=.+-.+.+.+.++ .|||.+++
T Consensus 191 ~~~v~~vr~~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIV 228 (271)
T 1ujp_A 191 KDLVRRIKAR---TALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp HHHHHHHHTT---CCSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred HHHHHHHHhh---cCCCEEEEcCCCCHHHHHHh--cCCCEEEE
Confidence 4788888753 36898877777778888775 99999986
No 364
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=30.13 E-value=2.1e+02 Score=27.32 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhCCCEEEE-EC---CHHHHHHHHHhcCCCceEE-EEcc-C---CCCCHH-HHHHHHHhhcCCCCccEEE
Q 004001 98 STRHVVAALLRNCGYEVTE-AT---NGLQAWKILEDLTNHIDLV-LTEV-M---PCLSGV-ALLSKIMSHKTRKNLPVIM 167 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~~-A~---dg~eALe~L~~~~~~pDLV-LlDi-M---P~mdGl-eLl~~IRs~~~~~~iPIIv 167 (780)
.....+.+.+++.|..+-. +. +..+.++.+.. ...|+| +.=. . ++.+.. +.+++++.. ++||++
T Consensus 90 ~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~----~~pi~v 163 (207)
T 3ajx_A 90 STIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA----RVPFSV 163 (207)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH----TSCEEE
T ss_pred HHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH--hCCCEEEEEecccccccCCCchHHHHHHhhCC----CCCEEE
Confidence 3444556666666777633 32 55664555544 347887 5422 2 333323 445555321 577776
Q ss_pred EecCCCHHHHHHHHHCCCCeEEe
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~ 190 (780)
.-+- ..+...+++++||+.++.
T Consensus 164 ~GGI-~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 164 AGGV-KVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp ESSC-CGGGHHHHHHTTCSEEEE
T ss_pred ECCc-CHHHHHHHHHcCCCEEEE
Confidence 5554 467788899999998753
No 365
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=30.08 E-value=50 Score=33.28 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEccC-----CCCC-HHHHHHHHHhhcCCCCccEE--EEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVM-----PCLS-GVALLSKIMSHKTRKNLPVI--MMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiM-----P~md-GleLl~~IRs~~~~~~iPII--vLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..++++.+.+ ...|.+-+|+| |.+. |.++++.||+.. .+++|+. ++.... ...+..+.++||+.+..
T Consensus 18 ~l~~~i~~l~~--~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~-~~~~~~dvhLmv~~p-~~~i~~~~~aGad~itv 93 (228)
T 3ovp_A 18 NLGAECLRMLD--SGADYLHLDVMDGHFVPNITFGHPVVESLRKQL-GQDPFFDMHMMVSKP-EQWVKPMAVAGANQYTF 93 (228)
T ss_dssp GHHHHHHHHHH--TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHH-CSSSCEEEEEECSCG-GGGHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHH--cCCCEEEEEecCCCcCcccccCHHHHHHHHHhh-CCCCcEEEEEEeCCH-HHHHHHHHHcCCCEEEE
Confidence 45677787776 44666666663 3333 889999998651 1345544 355433 34677888999987776
Q ss_pred CCCCHHHHHHHHHHH
Q 004001 191 KPIRKNELKNLWQHV 205 (780)
Q Consensus 191 KP~~~eeL~~~L~~l 205 (780)
-......+...++.+
T Consensus 94 H~Ea~~~~~~~i~~i 108 (228)
T 3ovp_A 94 HLEATENPGALIKDI 108 (228)
T ss_dssp EGGGCSCHHHHHHHH
T ss_pred ccCCchhHHHHHHHH
Confidence 543333444444444
No 366
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=30.00 E-value=2.4e+02 Score=29.74 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCH-------------HHHHH
Q 004001 115 TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSM-------------GLVFK 179 (780)
Q Consensus 115 ~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~-------------e~~~~ 179 (780)
+++.+.+.|+...+....++.|. ..+ .++.. ++.+++.+++. ..+||.+|.-.... +++..
T Consensus 44 vc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~ 119 (287)
T 3iwp_A 44 VCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEVMKADIRL 119 (287)
T ss_dssp EEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHHHHHHHHH
Q ss_pred HHHCCCCeEEeCC------CCHHHHHHHHHHH
Q 004001 180 CLSKGAVDFLVKP------IRKNELKNLWQHV 205 (780)
Q Consensus 180 al~aGAddyL~KP------~~~eeL~~~L~~l 205 (780)
+.++||++++.=- ++.+.+..+|...
T Consensus 120 ~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 120 AKLYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp HHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
No 367
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=29.90 E-value=68 Score=37.50 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=48.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCH-------HHHHHHH
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSG-------VALLSKI 154 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi---MP~mdG-------leLl~~I 154 (780)
..+.+|||||....+...|...|+..|+.+.++..... ... ..+|.||+-- -|...+ .++++.+
T Consensus 444 ~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~--~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a 517 (645)
T 3r75_A 444 LSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL--ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHL 517 (645)
T ss_dssp STTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG--GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc--cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHH
Confidence 34678999999999999999999999998876643222 111 3578888732 233333 2334443
Q ss_pred HhhcCCCCccEEEEe
Q 004001 155 MSHKTRKNLPVIMMS 169 (780)
Q Consensus 155 Rs~~~~~~iPIIvLS 169 (780)
.+ ..+||+-|.
T Consensus 518 ~~----~~iPiLGIC 528 (645)
T 3r75_A 518 ID----EGKPFMAVC 528 (645)
T ss_dssp HH----HTCCEEEET
T ss_pred HH----CCCCEEEEC
Confidence 22 358988775
No 368
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=29.89 E-value=2.1e+02 Score=29.45 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=51.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPI 165 (780)
++||.||.--..-...+..+....+++++ .+....+..+.+.+. +.+-..|+ -++ |. . +++-+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~~~------~~~---l~-~---~~~D~ 66 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEVRTI------DAI---EA-A---ADIDA 66 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEECCH------HHH---HH-C---TTCCE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCcCCH------HHH---hc-C---CCCCE
Confidence 46788887755555444444443467776 344333333333321 22212221 122 21 1 22334
Q ss_pred EEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 166 IMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 166 IvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
|++... ...+.+..++++|..-|+-||+ +.++...++..+
T Consensus 67 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 110 (331)
T 4hkt_A 67 VVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVV 110 (331)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHH
Confidence 444332 2345677788888888888884 566666555543
No 369
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=29.85 E-value=1.2e+02 Score=29.21 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~--~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|+.||-++......+..++..|+ .|. ...+..+.+..+.... ..||+|++|. .. +-..+++.+.
T Consensus 95 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~--~~~~~l~~~~ 166 (229)
T 2avd_A 95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKE--NCSAYYERCL 166 (229)
T ss_dssp CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST--THHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHH--HHHHHHHHHH
Confidence 4799999999999999999988775 343 5667777666554211 4699999996 33 2234555553
No 370
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=29.68 E-value=62 Score=35.94 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=62.9
Q ss_pred eCCHHHHHHHHHHHHhCCC--EEE----EEC------------------------CHHHHHHHHHhcCCCceEEEEcc-C
Q 004001 94 ENDDSTRHVVAALLRNCGY--EVT----EAT------------------------NGLQAWKILEDLTNHIDLVLTEV-M 142 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~Gy--eV~----~A~------------------------dg~eALe~L~~~~~~pDLVLlDi-M 142 (780)
+++....+.++..++..|| +|. .+. +..++++++...-..|+|+++.- +
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4556677778888876675 332 210 45777766543213478999988 8
Q ss_pred CCCCHHHHHHHHHhhcCCCCccEEEEecC---CCHHHHHHHHHCCCCeE-EeCCCCHHHHHHH
Q 004001 143 PCLSGVALLSKIMSHKTRKNLPVIMMSSL---DSMGLVFKCLSKGAVDF-LVKPIRKNELKNL 201 (780)
Q Consensus 143 P~mdGleLl~~IRs~~~~~~iPIIvLSa~---~~~e~~~~al~aGAddy-L~KP~~~eeL~~~ 201 (780)
+..| ++-.++|++. ..+||+ ... .......++++.++.++ ++|+-..--|..+
T Consensus 299 ~~dD-~~g~~~l~~~---~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea 355 (436)
T 2al1_A 299 AEDD-WEAWSHFFKT---AGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSES 355 (436)
T ss_dssp CTTC-HHHHHHHHTT---CCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHH
T ss_pred CCcC-HHHHHHHHhc---CCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHH
Confidence 7655 6677777654 346763 443 24678888999987655 5677544334333
No 371
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=29.68 E-value=62 Score=31.35 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEccCCC--CCHHHHHHHHHhhcCCCCccEEE--EecCCCHHHHHHHHHCCCCeEEeCCCC
Q 004001 119 NGLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSHKTRKNLPVIM--MSSLDSMGLVFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLVLlDiMP~--mdGleLl~~IRs~~~~~~iPIIv--LSa~~~~e~~~~al~aGAddyL~KP~~ 194 (780)
+.+++++.++.....+|+|-+- +|- ..|+++++.||+. .+++||.+ +..+.....+..+.++|++.++.--..
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G-~p~~~~~g~~~i~~ir~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVG-TPFLIREGVNAIKAIKEK--YPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEC-HHHHHHHTTHHHHHHHHH--CTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHHhhcCccEEEeC-cHHHHhccHHHHHHHHHh--CCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 4566666665432245554332 332 3578899999764 24677653 233333334788999999988875443
Q ss_pred H-HHHHHHHHH
Q 004001 195 K-NELKNLWQH 204 (780)
Q Consensus 195 ~-eeL~~~L~~ 204 (780)
. +.+...++.
T Consensus 88 ~~~~~~~~~~~ 98 (211)
T 3f4w_A 88 DVLTIQSCIRA 98 (211)
T ss_dssp CHHHHHHHHHH
T ss_pred ChhHHHHHHHH
Confidence 3 333433333
No 372
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=29.53 E-value=78 Score=35.12 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhCCCE----EE----EE----------------CCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHH
Q 004001 96 DDSTRHVVAALLRNCGYE----VT----EA----------------TNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVAL 150 (780)
Q Consensus 96 D~~~r~~L~~lL~~~Gye----V~----~A----------------~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleL 150 (780)
+....+.+.+.+++.||+ |. .+ -+..+|+++++..-..++|+++.- ++..| ++-
T Consensus 217 ~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~eg 295 (428)
T 3tqp_A 217 NEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIEDGLSEND-WAG 295 (428)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHH
T ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEeCCCCccc-HHH
Confidence 444455667778877663 22 21 256888887764113578898887 77554 555
Q ss_pred HHHHHhhcCCCCccEEEEecC-C--CHHHHHHHHHCCCCe-EEeCCCCHHHHHH
Q 004001 151 LSKIMSHKTRKNLPVIMMSSL-D--SMGLVFKCLSKGAVD-FLVKPIRKNELKN 200 (780)
Q Consensus 151 l~~IRs~~~~~~iPIIvLSa~-~--~~e~~~~al~aGAdd-yL~KP~~~eeL~~ 200 (780)
+++|++.- .+||-++... . ......++++.++.+ +++|+-..--|..
T Consensus 296 ~~~L~~~~---~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTe 346 (428)
T 3tqp_A 296 WKLLTERL---ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTE 346 (428)
T ss_dssp HHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred HHHHHHhc---CCCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 66665442 2355444443 1 567788888888755 4567654333333
No 373
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=29.47 E-value=1.5e+02 Score=31.50 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCCeEEeCCCC--HHHHHHHHHHH
Q 004001 174 MGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (780)
Q Consensus 174 ~e~~~~al~aGAddyL~KP~~--~eeL~~~L~~l 205 (780)
.+.+..|+++|..=|+-||+. .++...++..+
T Consensus 78 ~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a 111 (387)
T 3moi_A 78 CEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAV 111 (387)
T ss_dssp HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHH
Confidence 456778889998888889964 56666655544
No 374
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=29.46 E-value=1.8e+02 Score=31.65 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-----CCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 99 TRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-----PCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDi-M-----P~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
..+.++.+-+..+.-|. .+.+.++|..+.+ ..+|.|++.- - -+..-++++.++++.- ...+|||+-.+
T Consensus 240 ~~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~---aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av-~~~ipVia~GG 315 (392)
T 2nzl_A 240 SWEDIKWLRRLTSLPIVAKGILRGDDAREAVK---HGLNGILVSNHGARQLDGVPATIDVLPEIVEAV-EGKVEVFLDGG 315 (392)
T ss_dssp CHHHHHHHC--CCSCEEEEEECCHHHHHHHHH---TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH-TTSSEEEECSS
T ss_pred HHHHHHHHHHhhCCCEEEEecCCHHHHHHHHH---cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc-CCCCEEEEECC
Confidence 34445555444454333 4677888776665 3588888853 1 1234567777776432 23699999888
Q ss_pred CCCHHHHHHHHHCCCCeEEe-CCCC
Q 004001 171 LDSMGLVFKCLSKGAVDFLV-KPIR 194 (780)
Q Consensus 171 ~~~~e~~~~al~aGAddyL~-KP~~ 194 (780)
-....++.+++.+||+.+.. .|+-
T Consensus 316 I~~g~Dv~kalalGAd~V~iGr~~l 340 (392)
T 2nzl_A 316 VRKGTDVLKALALGAKAVFVGRPIV 340 (392)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCHHHHHHHHHhCCCeeEECHHHH
Confidence 88999999999999998754 4553
No 375
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=29.45 E-value=1.8e+02 Score=30.52 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
++.+||.||.--..-+......|... +++|+.+.+....- .... ...--+..|+ -++ |. .+++
T Consensus 3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~--~~~~~~~~~~------~~l---l~----~~~v 66 (358)
T 3gdo_A 3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRD--FPDAEVVHEL------EEI---TN----DPAI 66 (358)
T ss_dssp TTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHH--CTTSEEESST------HHH---HT----CTTC
T ss_pred CCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhh--CCCCceECCH------HHH---hc----CCCC
Confidence 35678999987665554344455444 77776443322211 1121 1111122222 112 21 1234
Q ss_pred cEEEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 164 PVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 164 PIIvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
-+|+++... -.+.+..|+++|..=|+-||+ +.++...++..+-
T Consensus 67 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~ 113 (358)
T 3gdo_A 67 ELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAAD 113 (358)
T ss_dssp CEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHH
Confidence 444443332 356778899999999999995 5677766655543
No 376
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=29.15 E-value=12 Score=39.45 Aligned_cols=16 Identities=19% Similarity=0.000 Sum_probs=8.8
Q ss_pred cCCHHhHHHHHHHHHh
Q 004001 719 KNKFADREAAVTKYRQ 734 (780)
Q Consensus 719 ~~~~~~r~~~~~~~~~ 734 (780)
+....+=.|+..|--.
T Consensus 136 qitasdfvaawqrvvd 151 (564)
T 4faj_A 136 QITASDFVAAWQRVVD 151 (564)
T ss_dssp BCCHHHHHHHHHHHHC
T ss_pred EeeHHHHHHHHHhhcC
Confidence 3445566666665543
No 377
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=29.13 E-value=2.4e+02 Score=28.99 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=50.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
+||.||.--..-...+..+....+++++ .+..-.+..+.+.+. .....+..|+ -++ | . +++-+|
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~~~~------~~~---l-~----~~~D~V 66 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASR-YQNIQLFDQL------EVF---F-K----SSFDLV 66 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGG-SSSCEEESCH------HHH---H-T----SSCSEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH-cCCCeEeCCH------HHH---h-C----CCCCEE
Confidence 5777777655544444444433366665 343333333333321 1111122221 112 2 1 223344
Q ss_pred EEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 167 MMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 167 vLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+++... ..+.+..++++|..=|+-||+ +.++...++..+
T Consensus 67 ~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 109 (325)
T 2ho3_A 67 YIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTA 109 (325)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH
Confidence 444332 345677788888888888887 556655554443
No 378
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=29.11 E-value=2.5e+02 Score=26.07 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHH
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNEL 198 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL 198 (780)
.+++++|++. .++++++|+.........+-..|...|+.......+.
T Consensus 41 ~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~ 87 (180)
T 1k1e_A 41 GLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETA 87 (180)
T ss_dssp HHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCHHHH
T ss_pred HHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCcHHH
Confidence 4678888653 5789999998877666666788998888655444443
No 379
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=28.97 E-value=1.5e+02 Score=31.99 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 120 GLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDi-MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..+.++.+.+ ..+|+|.+|. ... ..-++.+++|++. .+++|||+-+ -...+.+.++.++|||.+..
T Consensus 109 ~~~~~~~lie--aGvd~I~idta~G~~~~~~~~I~~ik~~--~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 109 NEERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp CHHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHH--CTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHh--cCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 3555666655 5689999987 322 2235677888654 3677776532 23567788899999988877
No 380
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=28.92 E-value=2.1e+02 Score=28.04 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCC-C-CHHHHHHHHHhhcCCCCccEEEEe
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPC-L-SGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDi-MP~-m-dGleLl~~IRs~~~~~~iPIIvLS 169 (780)
+...+...+++.||.+..+.. .. +.++.+.. ..+|-||+-. ... . ...+++++++. ..+|||++.
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~~ 106 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS--QHIDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--CCCCEEEEecccccccCCcHHHHHHHHh----cCCCEEEEe
Confidence 455666777788998886542 22 34555554 5788888754 221 1 23567777754 358999886
Q ss_pred cC
Q 004001 170 SL 171 (780)
Q Consensus 170 a~ 171 (780)
..
T Consensus 107 ~~ 108 (298)
T 3tb6_A 107 AS 108 (298)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 381
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=28.90 E-value=59 Score=29.86 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=63.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
+.++.|||==-++.+|.++..+|..+|..+...... .....+||+|+|- | ....-+
T Consensus 5 LdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der--------~~~~eyDi~lTDn-p---------------~~~~~~ 60 (117)
T 2kx7_A 5 LDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER--------LISQDYDIFLTDN-P---------------SNLTAS 60 (117)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS--------SSCCCCSEEEEES-G---------------GGCSSS
T ss_pred ccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc--------CCCCcccEEEecC-c---------------cccCcC
Confidence 356788888899999999999999999888765321 1135799999995 1 123346
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCC-HHHHHHHHHHHHHHhc
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIR-KNELKNLWQHVWRRCH 210 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~-~eeL~~~L~~llrr~~ 210 (780)
+|++++.... +..=...||.--|. .++|..+|..++++.-
T Consensus 61 tLLL~~d~~G------~~~l~p~~irvNyN~s~alidAIllLIEqql 101 (117)
T 2kx7_A 61 GLLLSDDESG------VREIGPGQLCVNFNMSNAMQEAVLQLIEVQL 101 (117)
T ss_dssp EEEECTTCSS------EEEEETTEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred eEEEecCccc------ccccCCCeEEEeccchHHHHHHHHHHHHHHH
Confidence 7778775431 11112345554555 3567777777776543
No 382
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.88 E-value=1.1e+02 Score=31.70 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=31.7
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+|++-|.. ..+.+..+.+..|..+....+..+....+... ..||+||+|.
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiDT 190 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVDT 190 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEEC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEeC
Confidence 4568999998863 22334444444565544444544433333322 4689999996
No 383
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=28.64 E-value=12 Score=40.55 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=0.0
Q ss_pred cccCCCCc--cchhhh
Q 004001 737 TERCFRKK--VRYQSR 750 (780)
Q Consensus 737 ~~r~~~k~--i~y~~r 750 (780)
+.-||-+| |-|..|
T Consensus 320 ~~~~~~~~~~~~~~~~ 335 (358)
T 2pk2_A 320 CQLCFLRSLGIDYLDA 335 (358)
T ss_dssp ----------------
T ss_pred cHHHhccccceeeecc
Confidence 56788888 788555
No 384
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=28.59 E-value=1.2e+02 Score=30.95 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=56.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
|+.+||.||.--..-...+...|.. .+++++ .+..-.+..+.+.+. ..... .. +--+++. ..+
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~~~~~-~~------~~~~ll~-------~~D 68 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD-YRIMP-FD------SIESLAK-------KCD 68 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH-HTCCB-CS------CHHHHHT-------TCS
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH-cCCCC-cC------CHHHHHh-------cCC
Confidence 4568999998876665534444544 478877 444333333333321 11111 11 1122222 123
Q ss_pred ccEEEEec--CCCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 163 LPVIMMSS--LDSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 163 iPIIvLSa--~~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
+|+++. ....+.+..++++|..=|+-||+ +.+++..++..+-
T Consensus 69 --~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~ 114 (308)
T 3uuw_A 69 --CIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELST 114 (308)
T ss_dssp --EEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHH
T ss_pred --EEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 333433 23355677899999998899998 5667666665543
No 385
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=28.58 E-value=1.5e+02 Score=28.21 Aligned_cols=55 Identities=9% Similarity=0.194 Sum_probs=42.8
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 84 HLRSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 84 ~~~~lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+.+|.+. ........+..++...|+ ++..+.+..+++..+.. .+.|+++.+.
T Consensus 145 dL~g~~i~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 201 (259)
T 2v25_A 145 DMKGANIGVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA--KRVDAFSVDK 201 (259)
T ss_dssp GCTTCEEEEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred HhCCCEEEEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc--CCCcEEEecH
Confidence 4566787776 444556777888887776 67788999999999987 7899999874
No 386
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.58 E-value=1.5e+02 Score=28.32 Aligned_cols=66 Identities=8% Similarity=0.100 Sum_probs=46.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcC--CCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLT--NHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye--V~-~A~dg~eALe~L~~~~--~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++......+..+...|+. |. ...+..+.+..+.... ..||+|++|. ... -..+++.+.
T Consensus 90 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~--~~~~l~~~~ 161 (225)
T 3tr6_A 90 GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKAN--TDLYYEESL 161 (225)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGGG--HHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHHH--HHHHHHHHH
Confidence 47999999999999999999888753 44 5677777776654211 4699999987 332 234455553
No 387
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=28.36 E-value=2.4e+02 Score=25.35 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.+++++|++ ..++++++|+.........+-..|...|+..
T Consensus 42 ~~~l~~l~~----~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 42 GIGIKLLQK----MGITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHHHHHT----TTCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHH----CCCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 378888864 3478999999887766666668899888854
No 388
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=28.33 E-value=1.3e+02 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=9.3
Q ss_pred HHHHHHHhCCCEEEEEC
Q 004001 102 VVAALLRNCGYEVTEAT 118 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~A~ 118 (780)
.|...|...|++|..+.
T Consensus 39 ~La~~L~~~GheV~v~~ 55 (398)
T 3oti_A 39 QLAWGFRTAGHDVLIAV 55 (398)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCEEEEec
Confidence 34455555666666443
No 389
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=28.20 E-value=2.8e+02 Score=28.75 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=50.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCce-EEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHID-LVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~pD-LVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
+||.||.--..-...+..++.. .+++++ .+..-.+..+.+.+. ..++ -+..|+ -++ |. . +++-
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~-~g~~~~~~~~~------~~l---l~-~---~~~D 68 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ-YQLNATVYPND------DSL---LA-D---ENVD 68 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH-TTCCCEEESSH------HHH---HH-C---TTCC
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH-hCCCCeeeCCH------HHH---hc-C---CCCC
Confidence 5777777665555555554423 467766 333333333333221 2211 122221 112 21 1 2233
Q ss_pred EEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 165 VIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 165 IIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+|++... ...+.+..++++|..=|+-||+ +.++...++..+
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a 113 (344)
T 3mz0_A 69 AVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEE 113 (344)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred EEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHH
Confidence 3444332 2345667788888888888886 456666555543
No 390
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=28.17 E-value=1.4e+02 Score=31.16 Aligned_cols=104 Identities=7% Similarity=0.105 Sum_probs=51.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+||.||---..-...+. .|... +++++ .+..-.+..+.+.+ .+.+ +..+.+ -+.|. . +++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~-~l~~~~~~~lvav~d~~~~~~~~~~~---~~g~------~~~~~~--~~~l~-~---~~~ 67 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMAD-AYTKSEKLKLVTCYSRTEDKREKFGK---RYNC------AGDATM--EALLA-R---EDV 67 (354)
T ss_dssp CCEEEEEECCSHHHHHHHH-HHTTCSSEEEEEEECSSHHHHHHHHH---HHTC------CCCSSH--HHHHH-C---SSC
T ss_pred CcceEEEEccCHHHHHHHH-HHHhCCCcEEEEEECCCHHHHHHHHH---HcCC------CCcCCH--HHHhc-C---CCC
Confidence 3568888887655444444 44444 77766 33333333333322 1111 111111 11221 1 223
Q ss_pred cEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 164 PVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 164 PIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
-+|+++.. ...+.+..++++|..-|+-||+ +.++...++..+
T Consensus 68 D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a 113 (354)
T 3db2_A 68 EMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVI 113 (354)
T ss_dssp CEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHH
Confidence 34444332 2345677888899888888995 456666555543
No 391
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=28.16 E-value=12 Score=39.97 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=12.3
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCC
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAV 186 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAd 186 (780)
++||-+=| ...+.+.+|+++|++
T Consensus 105 ~vpISIDT--~~~~Va~aAl~aGa~ 127 (314)
T 3tr9_A 105 PQLISVDT--SRPRVMREAVNTGAD 127 (314)
T ss_dssp CSEEEEEC--SCHHHHHHHHHHTCC
T ss_pred CCeEEEeC--CCHHHHHHHHHcCCC
Confidence 34444333 345566667777764
No 392
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=28.06 E-value=1.5e+02 Score=32.08 Aligned_cols=77 Identities=8% Similarity=0.052 Sum_probs=49.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCE-EE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC---------------GYE-VT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVAL 150 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~---------------Gye-V~-~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleL 150 (780)
.+|+.||-++...+.++.-++.. |.. +. ...|..+.+..+ ...||+|++|- |+ ...++
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP-~~-~~~~~ 146 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP-FG-SPMEF 146 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC-SS-CCHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC-CC-CHHHH
Confidence 47999999999999999998877 653 44 566766665443 24699999985 22 22455
Q ss_pred HHHHHhhcCCCCccEEEEecC
Q 004001 151 LSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 151 l~~IRs~~~~~~iPIIvLSa~ 171 (780)
+......- ..--+|++|..
T Consensus 147 l~~a~~~l--k~gG~l~vt~t 165 (378)
T 2dul_A 147 LDTALRSA--KRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHE--EEEEEEEEEEC
T ss_pred HHHHHHhc--CCCCEEEEEee
Confidence 55432211 11226666653
No 393
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.73 E-value=1.7e+02 Score=32.65 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=34.4
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~---dg----~eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+||+-|+. ..+.|..+-...|..+.... +. .++++.+.. ..+|+||+|.
T Consensus 127 ~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~--~~~DvVIIDT 190 (443)
T 3dm5_A 127 RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS--KGVDIIIVDT 190 (443)
T ss_dssp TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 5678999997753 33344444445577776432 32 345556654 5699999997
No 394
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=27.69 E-value=3.1e+02 Score=29.79 Aligned_cols=113 Identities=10% Similarity=0.003 Sum_probs=59.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhc--CCC-ceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDL--TNH-IDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-~A~dg~eALe~L~~~--~~~-pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
++.+||.||---..-...+..+...-+++++ ++....+..+.+.+. ... ++.-+.+ ....+ ++.|-+ .
T Consensus 18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~-~~~~~----~~~ll~---~ 89 (444)
T 2ixa_A 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFG-NGNDD----YKNMLK---D 89 (444)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEEC-SSTTT----HHHHTT---C
T ss_pred CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceec-cCCCC----HHHHhc---C
Confidence 4678999998766555555544433478876 444333333332210 011 1122221 00011 122211 1
Q ss_pred CCccEEEEecCC--CHHHHHHHHHCCCCeEEeCCCC--HHHHHHHHHHH
Q 004001 161 KNLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (780)
Q Consensus 161 ~~iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~~--~eeL~~~L~~l 205 (780)
+++-+|+++... ..+.+.+|+++|..=|+-||+. .++..+++..+
T Consensus 90 ~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a 138 (444)
T 2ixa_A 90 KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVS 138 (444)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHH
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH
Confidence 334455554433 3567888999999999999974 77776666554
No 395
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=27.48 E-value=1.5e+02 Score=30.82 Aligned_cols=88 Identities=9% Similarity=0.102 Sum_probs=51.1
Q ss_pred cEEEEE-eCCHHH---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDDST---RHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~~~---r~~L~~lL~~~GyeV~~-------A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
.||.|| +|+..- ...++..|+..|.+|+. ..+....+..++. ..+|+|++-...+.+...+++.+++
T Consensus 140 k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~pd~v~~~~~~~~~~~~~~~~~~~ 217 (371)
T 4f06_A 140 TKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKN--SGADMIFTFLPAGPPTLGFVKAYID 217 (371)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH--HTCSEEEEECCTTHHHHHHHHHHHH
T ss_pred eEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHh--cCCCEEEEEeccCchhhHHHHHHHH
Confidence 355444 555433 34567777888888762 2366677888876 5789988644334456677888876
Q ss_pred hcCCCC-ccEEEEecCCCHHHH
Q 004001 157 HKTRKN-LPVIMMSSLDSMGLV 177 (780)
Q Consensus 157 ~~~~~~-iPIIvLSa~~~~e~~ 177 (780)
...... .+++..........+
T Consensus 218 ~g~~~~~~~~~~~~~~~~~~~~ 239 (371)
T 4f06_A 218 NGLKAGGVKLMSTGDVVTEPDL 239 (371)
T ss_dssp TTTTTTTCEEEEEGGGGCGGGH
T ss_pred hhhhccCcEEEEecccCCHHHH
Confidence 544333 344444333333333
No 396
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=27.47 E-value=13 Score=42.59 Aligned_cols=8 Identities=0% Similarity=-0.226 Sum_probs=4.4
Q ss_pred HHHHHHHh
Q 004001 727 AAVTKYRQ 734 (780)
Q Consensus 727 ~~~~~~~~ 734 (780)
.-|+||-+
T Consensus 84 kl~s~~~~ 91 (560)
T 3odm_A 84 QIALGLIS 91 (560)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhhh
Confidence 34566666
No 397
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=27.47 E-value=2e+02 Score=28.43 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=50.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye--V~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~i 163 (780)
.+|..||-++......+..+...|+. |. ...+..+.+..+.. ...||+||+|. .+. -..+++.+... ..+.-
T Consensus 89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~~--~~~~l~~~~~~-LkpGG 164 (248)
T 3tfw_A 89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKPN--NPHYLRWALRY-SRPGT 164 (248)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGGG--HHHHHHHHHHT-CCTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchHH--HHHHHHHHHHh-cCCCe
Confidence 47999999999999999999888763 44 56677665554421 23799999997 433 23455555422 22333
Q ss_pred cEEEEec
Q 004001 164 PVIMMSS 170 (780)
Q Consensus 164 PIIvLSa 170 (780)
+|++..
T Consensus 165 -~lv~~~ 170 (248)
T 3tfw_A 165 -LIIGDN 170 (248)
T ss_dssp -EEEEEC
T ss_pred -EEEEeC
Confidence 555543
No 398
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=27.45 E-value=1.3e+02 Score=31.60 Aligned_cols=74 Identities=27% Similarity=0.299 Sum_probs=0.0
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhCCCEEEEECCHH----------------------------------------
Q 004001 86 RSLKVLLVEND----DSTRHVVAALLRNCGYEVTEATNGL---------------------------------------- 121 (780)
Q Consensus 86 ~~lrVLIVDDD----~~~r~~L~~lL~~~GyeV~~A~dg~---------------------------------------- 121 (780)
..||||++-.. ..-...|...|.+.|++|..+....
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREE 93 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSH
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccch
Q ss_pred --------------------HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEe
Q 004001 122 --------------------QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 122 --------------------eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLS 169 (780)
+..+++++ ..||+|+.|. ...-|.-+.+.+ .+|+|.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVv~d~-~~~~~~~~a~~~-------giP~v~~~ 151 (398)
T 4fzr_A 94 KPLLEHIGRGYGRLVLRMRDEALALAER--WKPDLVLTET-YSLTGPLVAATL-------GIPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEET-TCTHHHHHHHHH-------TCCEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEECc-cccHHHHHHHhh-------CCCEEEec
No 399
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=27.42 E-value=1e+02 Score=29.15 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
+.+.+|.++.... ....+...+...++.+..+.+..+++++|.. .++|+++.|.
T Consensus 109 L~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 162 (239)
T 1lst_A 109 LKGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTA--GRLDAALQDE 162 (239)
T ss_dssp HTTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred hCCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc--CCCCEEEeCc
Confidence 4667888876554 3445666665558899999999999999987 7899999884
No 400
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=27.39 E-value=1.8e+02 Score=32.24 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCccEEEEEeC----CHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCc-e-EEEEccCCCCCHHHHHHHHHh
Q 004001 85 LRSLKVLLVEN----DDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHI-D-LVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 85 ~~~lrVLIVDD----D~~~r~~L~~lL~~-~GyeV~-~A~dg~eALe~L~~~~~~p-D-LVLlDiMP~mdGleLl~~IRs 156 (780)
++.+||.||-- -..-...+..+... .+++|+ ++..-.+..+.+.+. ..+ . .+..|+ -++ |.
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~-~g~~~~~~~~d~------~el---l~- 105 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ-LQLKHATGFDSL------ESF---AQ- 105 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH-TTCTTCEEESCH------HHH---HH-
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH-cCCCcceeeCCH------HHH---hc-
Confidence 56789999987 44444445554443 478876 444333433333321 122 1 223221 122 21
Q ss_pred hcCCCCccEEEEecCC--CHHHHHHHHHCC------CCeEEeCCCC--HHHHHHHHHH
Q 004001 157 HKTRKNLPVIMMSSLD--SMGLVFKCLSKG------AVDFLVKPIR--KNELKNLWQH 204 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~--~~e~~~~al~aG------AddyL~KP~~--~eeL~~~L~~ 204 (780)
. +++-+|+++... -.+.+..|+++| ..=|+-||+. .++..+++..
T Consensus 106 ~---~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~ 160 (479)
T 2nvw_A 106 Y---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSI 160 (479)
T ss_dssp C---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHH
T ss_pred C---CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHH
Confidence 1 234455554433 345677899999 7888999974 6666655544
No 401
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=27.23 E-value=69 Score=33.37 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH--HHHHHHHHhcCCCceE--EEEccCCCCCHHHHHHHHHhhcCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNG--LQAWKILEDLTNHIDL--VLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg--~eALe~L~~~~~~pDL--VLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
++.+||.||.--..-...+..+....+++++.+.+. +.+.+..+ .+.+ +..| ++.+-. .
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~----~~~~~~~~~~----------~~~ll~---~ 65 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN----KYHLPKAYDK----------LEDMLA---D 65 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC-------CCCCSCEESC----------HHHHHT---C
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH----HcCCCcccCC----------HHHHhc---C
Confidence 456899999887665555555555456777644322 22222221 1221 1211 122211 1
Q ss_pred CCccEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 161 KNLPVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 161 ~~iPIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
+++-+|++... .-.+.+..|+++|..=|+-||+ +.+++..++..+
T Consensus 66 ~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a 114 (329)
T 3evn_A 66 ESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALA 114 (329)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHH
Confidence 23444544433 3355677899999999999997 466766665554
No 402
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=27.21 E-value=4e+02 Score=26.28 Aligned_cols=65 Identities=8% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g---~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+-.. ..+ -+.++.++. ..+|||++-..
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~-~~~-~~~~~~l~~----~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG--KQVDGIVFMGG-NIT-DEHVAEFKR----SPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS-CCC-HHHHHHHHH----SSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC-CCC-HHHHHHHHh----cCCCEEEEccc
Confidence 345566677788998875532 2 234555554 57898876431 112 345666642 46899988543
No 403
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=27.20 E-value=1.1e+02 Score=33.29 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=49.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHH-HHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWK-ILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye---V~-~A~dg~eALe-~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~ 162 (780)
.+|+.||-++...+.+++-++..|++ +. ...|..+.+. .+ ...||+|++|. ++. ..+++..+...- ..
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP-~g~-~~~~l~~a~~~L--k~ 150 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP-FGT-PVPFIESVALSM--KR 150 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC-SSC-CHHHHHHHHHHE--EE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC-CcC-HHHHHHHHHHHh--CC
Confidence 47999999999999999999988873 44 4456555543 32 24699999996 221 123454442211 11
Q ss_pred ccEEEEecCC
Q 004001 163 LPVIMMSSLD 172 (780)
Q Consensus 163 iPIIvLSa~~ 172 (780)
--+|++|...
T Consensus 151 gGll~~t~t~ 160 (392)
T 3axs_A 151 GGILSLTATD 160 (392)
T ss_dssp EEEEEEEECC
T ss_pred CCEEEEEecc
Confidence 2367776643
No 404
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=27.17 E-value=1.5e+02 Score=31.28 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=56.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCH-HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVTEATNG-LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~A~dg-~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+||.||.--..-+......|... +++|+.+.+. .+.+. .. ...+ -+..|+ +.|-. .+++
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~-~~~~-~~~~~~----------~~ll~---~~~~ 68 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--RD-LPDV-TVIASP----------EAAVQ---HPDV 68 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--HH-CTTS-EEESCH----------HHHHT---CTTC
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hh-CCCC-cEECCH----------HHHhc---CCCC
Confidence 4689999988766555455555554 7887744332 22222 11 0111 122221 22211 1234
Q ss_pred cEEEEecC--CCHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 164 PVIMMSSL--DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 164 PIIvLSa~--~~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
-+|+++.. .-.+.+.+|+++|..=|+-||+ +.++...++..+
T Consensus 69 D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a 114 (364)
T 3e82_A 69 DLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALA 114 (364)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHH
Confidence 44444433 2356678899999999999997 566766655554
No 405
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=27.07 E-value=1.4e+02 Score=28.93 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=50.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCC-CHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCL-SGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~m-dGleLl~~IRs~~~~~~i 163 (780)
.+..|.++|.++.....+. +..|+.++... .-.+.|+.+.- ...|+||+-+ ++. .-..++..++. ..+..
T Consensus 22 ~g~~v~vid~~~~~~~~l~---~~~~~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~-~~d~~n~~~~~~a~~--~~~~~ 93 (218)
T 3l4b_C 22 RKYGVVIINKDRELCEEFA---KKLKATIIHGDGSHKEILRDAEV--SKNDVVVILT-PRDEVNLFIAQLVMK--DFGVK 93 (218)
T ss_dssp TTCCEEEEESCHHHHHHHH---HHSSSEEEESCTTSHHHHHHHTC--CTTCEEEECC-SCHHHHHHHHHHHHH--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHH---HHcCCeEEEcCCCCHHHHHhcCc--ccCCEEEEec-CCcHHHHHHHHHHHH--HcCCC
Confidence 3567889998877655443 33567665432 12334444322 4678888654 222 22333333432 23555
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.||+.... .+.......+|++.++.
T Consensus 94 ~iia~~~~--~~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 94 RVVSLVND--PGNMEIFKKMGITTVLN 118 (218)
T ss_dssp EEEECCCS--GGGHHHHHHHTCEECCC
T ss_pred eEEEEEeC--cchHHHHHHCCCCEEEC
Confidence 56655443 33445567789865443
No 406
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=27.05 E-value=50 Score=35.12 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-C----CC-CCHHHHHHHHHhhcCCCCccEEEEecCCCH
Q 004001 103 VAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-M----PC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSM 174 (780)
Q Consensus 103 L~~lL~~~GyeV~~--A~dg~eALe~L~~~~~~pDLVLlDi-M----P~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~ 174 (780)
+-..|+..|+.+.. +.+|-..+..|.. -++|.|=+|- + .. .....+++.|-.....-.+.| +.-+-.+.
T Consensus 217 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~~--lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~v-vAEGVEt~ 293 (340)
T 4hjf_A 217 ILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVENA 293 (340)
T ss_dssp HHHHHHHHTCEEEEECTTSSSCGGGTGGG--SCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEE-EEECCCSH
T ss_pred HHHHHHHcCCCccccCCCCCcchHHHHHh--CCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEE-EEEeCCcH
Confidence 34455667877663 5556666777766 6789999984 2 22 122345555432111123444 45666777
Q ss_pred HHHHHHHHCCCCe----EEeCCCCHHHHHHHHHHHH
Q 004001 175 GLVFKCLSKGAVD----FLVKPIRKNELKNLWQHVW 206 (780)
Q Consensus 175 e~~~~al~aGAdd----yL~KP~~~eeL~~~L~~ll 206 (780)
+....+.+.|++- |+.||+..+++...|++..
T Consensus 294 ~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 329 (340)
T 4hjf_A 294 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAY 329 (340)
T ss_dssp HHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhcc
Confidence 7888888999864 3689999999988776543
No 407
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=27.02 E-value=3.7e+02 Score=27.35 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=48.9
Q ss_pred cEEEEE-eCCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDDST---RHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~~~---r~~L~~lL~~~GyeV~~---A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.+| +|+... .+.+...|++.|+++.. . .+....+..+.. ..+|+||+.. .+.....+++.+++
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~--~~~dai~~~~-~~~~a~~~~~~~~~ 228 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIAS--LKPDCVYAFF-SGGGALKFIKDYAA 228 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH--HCCSEEEEEC-CTHHHHHHHHHHHH
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHh--cCCCEEEEec-CcchHHHHHHHHHH
Confidence 466655 444433 35567778888987642 2 355667777765 4689999843 33456778888876
Q ss_pred hcCCCCccEEEEe
Q 004001 157 HKTRKNLPVIMMS 169 (780)
Q Consensus 157 ~~~~~~iPIIvLS 169 (780)
.. ..+||+...
T Consensus 229 ~g--~~vp~~~~~ 239 (375)
T 4evq_A 229 AN--LGIPLWGPG 239 (375)
T ss_dssp TT--CCCCEEEEG
T ss_pred cC--CCceEEecC
Confidence 54 448877653
No 408
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=27.01 E-value=83 Score=29.97 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~ 144 (780)
|+|||..-.-.+-..|...|.+.|++|..+....+.+..+.. ..+.++..|+ -+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~ 56 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT 56 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc
Confidence 479999988888888888888889999855444444444432 4577888887 444
No 409
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.00 E-value=82 Score=31.28 Aligned_cols=55 Identities=9% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHhc--CCCceEEEEcc-C-----CCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHH
Q 004001 122 QAWKILEDL--TNHIDLVLTEV-M-----PCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFK 179 (780)
Q Consensus 122 eALe~L~~~--~~~pDLVLlDi-M-----P~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~ 179 (780)
.+|+.+.+. ...|||||+|- . .-.+--++++.|..++ ... -||||++.....+.+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~-~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQ-TVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTC-EEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCC-EEEEECCCCcHHHHH
Confidence 345544432 25799999995 2 2355667888886543 344 455666665554443
No 410
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=26.99 E-value=71 Score=30.90 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=41.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEcc-CC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV-MP 143 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~-~A~dg~eALe~L~~~--~~~pDLVLlDi-MP 143 (780)
..+|.-||-++......+..++..|+. |. ...+..+.+..+... ...||+||+|. ..
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 348999999999999999999887762 44 566776665544310 04699999997 43
No 411
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=26.98 E-value=41 Score=32.16 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=65.4
Q ss_pred ccEEEEEeCCH-----H-HHHHHHHHHHhCCCEEEE---E-----C-------C----HHHHHHHHHhcCCCceEEEEcc
Q 004001 87 SLKVLLVENDD-----S-TRHVVAALLRNCGYEVTE---A-----T-------N----GLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 87 ~lrVLIVDDD~-----~-~r~~L~~lL~~~GyeV~~---A-----~-------d----g~eALe~L~~~~~~pDLVLlDi 141 (780)
.++|.|.-.-- . ..+.+...|+..| .|.. + . + ...-+++|+. .|+||.++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vva~~ 85 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVVAEV 85 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEEEEC
Confidence 45787773222 1 3577888898888 7731 0 0 1 1122345554 68898876
Q ss_pred -CCC-CCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCC---CeEEeCCCCHHHHHHHHHHHHHHhccC
Q 004001 142 -MPC-LSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGA---VDFLVKPIRKNELKNLWQHVWRRCHSS 212 (780)
Q Consensus 142 -MP~-mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGA---ddyL~KP~~~eeL~~~L~~llrr~~~~ 212 (780)
-++ ..++|+--... ...|||++........ ..+|-.|. ..|-...++.++|...|...++.....
T Consensus 86 ~~~d~Gt~~EiGyA~a-----lgKPVi~l~~~~~~~~-~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~~~~~ 155 (165)
T 2khz_A 86 TQPSLGVGYELGRAVA-----LGKPILCLFRPQSGRV-LSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQ 155 (165)
T ss_dssp SSCCHHHHHHHHHHHH-----TCSSEEEEECTTTTCC-CCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHTSCSS
T ss_pred CCCCCCHHHHHHHHHH-----CCCEEEEEEcCCCCCc-chhhhcccCccceeEEEecCHHHHHHHHHHHHHhcCCC
Confidence 433 23466654442 3579999876542111 11112233 335555568899999999998865433
No 412
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=26.80 E-value=1e+02 Score=31.53 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCC
Q 004001 122 QAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPI 193 (780)
Q Consensus 122 eALe~L~~~~~~pDLVLlDi---MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~ 193 (780)
++++.+.+ ...|+|.+-. +--.+.++++++||+ .++|||+|+.... .+..|++.||+--+
T Consensus 24 ~~~~~l~~--~GaD~ielG~S~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~n------~i~~G~dg~iiPdL 86 (240)
T 1viz_A 24 EQLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRR----FLVPCVLEVSAIE------AIVPGFDLYFIPSV 86 (240)
T ss_dssp HHHHHHHT--SCCSEEEECC----CHHHHHHHHHHHTT----SSSCEEEECSCGG------GCCSCCSEEEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhhC----cCCCEEEecCccc------cccCCCCEEEEccc
Confidence 34444444 4567777765 222235777888854 4799999998742 22789999998533
No 413
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=26.73 E-value=2e+02 Score=28.49 Aligned_cols=64 Identities=6% Similarity=-0.006 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN------GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d------g~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+.. ..+.++.+.. ..+|.||+-. .+. + +.++.++. ..+|||++-..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~~ 96 (287)
T 3bbl_A 26 FLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS--GNVDGFVLSSINYN-D--PRVQFLLK----QKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT--TCCSEEEECSCCTT-C--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc--CCCCEEEEeecCCC-c--HHHHHHHh----cCCCEEEECCc
Confidence 455667777888999876542 2346666655 6789888754 222 2 55666643 35899888543
No 414
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=26.63 E-value=91 Score=32.50 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=0.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEEEECC-------------------------------------------
Q 004001 87 SLKVLLVE----NDDSTRHVVAALLRNCGYEVTEATN------------------------------------------- 119 (780)
Q Consensus 87 ~lrVLIVD----DD~~~r~~L~~lL~~~GyeV~~A~d------------------------------------------- 119 (780)
.||||++- -+..-...|...|+..|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 120 ----------------------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 120 ----------------------g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
..+..+++++ ..||+||.|. +...|.-+.+.+ .+|+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PD~Vv~~~-~~~~~~~aa~~~-------giP~v~~ 141 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA--WRPSVLLVDV-CALIGRVLGGLL-------DLPVVLH 141 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEET-TCHHHHHHHHHT-------TCCEEEE
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHh--cCCCEEEeCc-chhHHHHHHHHh-------CCCEEEE
No 415
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=26.61 E-value=4.3e+02 Score=26.69 Aligned_cols=75 Identities=8% Similarity=0.176 Sum_probs=43.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccE
Q 004001 88 LKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~-~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPI 165 (780)
+||+|+--.-.+-..+...+.. .+++++.+.+..+-++.+.. ..+| |++|. -|. ...+.+....+ ..+|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~--~~~D-vvIDfT~p~-a~~~~~~~a~~----~g~~~ 72 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD--GNTE-VVIDFTHPD-VVMGNLEFLID----NGIHA 72 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH--TTCC-EEEECSCTT-THHHHHHHHHH----TTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc--cCCc-EEEEccChH-HHHHHHHHHHH----cCCCE
Confidence 4788888655555555665654 48998854322111222222 2478 67788 665 45667766543 34677
Q ss_pred EEEec
Q 004001 166 IMMSS 170 (780)
Q Consensus 166 IvLSa 170 (780)
|+-|.
T Consensus 73 VigTT 77 (245)
T 1p9l_A 73 VVGTT 77 (245)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 77544
No 416
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.56 E-value=2.4e+02 Score=27.84 Aligned_cols=64 Identities=17% Similarity=0.042 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HH---HHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 99 TRHVVAALLRNCGYEVTEATNG------LQ---AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~dg------~e---ALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
+...+...+++.||.+..+... .+ .++.+.. ..+|-||+-. .+. -+.++.++. ..+|||++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~l~~----~~iPvV~~ 96 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG--RDCDGVVVISHDLH---DEDLDELHR----MHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH--TTCSEEEECCSSSC---HHHHHHHHH----HCSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh--cCccEEEEecCCCC---HHHHHHHhh----cCCCEEEE
Confidence 3455666677889998765421 23 5666655 5789888754 222 355666643 35899888
Q ss_pred ecC
Q 004001 169 SSL 171 (780)
Q Consensus 169 Sa~ 171 (780)
-..
T Consensus 97 ~~~ 99 (290)
T 2rgy_A 97 NRA 99 (290)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 417
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.55 E-value=1.7e+02 Score=28.92 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=10.6
Q ss_pred CccEEEEEeCCHH
Q 004001 86 RSLKVLLVENDDS 98 (780)
Q Consensus 86 ~~lrVLIVDDD~~ 98 (780)
++.+|||||-|+.
T Consensus 54 ~g~~VlliD~D~~ 66 (267)
T 3k9g_A 54 KNNKVLLIDMDTQ 66 (267)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCCEEEEECCCC
Confidence 5678999998875
No 418
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=26.55 E-value=1.8e+02 Score=28.45 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=46.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy--eV~-~A~dg~eALe~L~~~~--~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..||+||+|. .+. -..+++.+.
T Consensus 98 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~--~~~~l~~~~ 169 (232)
T 3cbg_A 98 GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRN--YPRYYEIGL 169 (232)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGGG--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHHH--HHHHHHHHH
Confidence 4799999999999999999887776 243 5677777766554211 4699999997 332 234555553
No 419
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=26.52 E-value=99 Score=32.26 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=59.7
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEE-EEccCCCCCHHHHH---HHHHhhcCCC
Q 004001 87 SLKVLLVEN-DDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLV-LTEVMPCLSGVALL---SKIMSHKTRK 161 (780)
Q Consensus 87 ~lrVLIVDD-D~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLV-LlDiMP~mdGleLl---~~IRs~~~~~ 161 (780)
++||.||.- -..-...+..+ ...+++++.+.+.......+.. ..+.+- +.|+ -+++ +.|+. ...+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~~~~~--~~~~~~~~~~~------~~ll~~~~~l~~-~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVGIIDS--ISPQSEFFTEF------EFFLDHASNLKR-DSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCGGGGG--TCTTCEEESSH------HHHHHHHHHHTT-STTT
T ss_pred ceEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHHHHHh--hCCCCcEECCH------HHHHHhhhhhhh-ccCC
Confidence 578999987 33444444444 4458887755443322222222 112222 2221 2233 33321 0124
Q ss_pred CccEEEEecCC--CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVW 206 (780)
Q Consensus 162 ~iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~ll 206 (780)
++-+|++.... -.+.+.+|+++|.+=|+-||+ +.+++.+++...-
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 121 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIER 121 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 45555554433 356688999999999999995 6777777666543
No 420
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=26.48 E-value=2.8e+02 Score=27.02 Aligned_cols=106 Identities=8% Similarity=-0.036 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEE---Ecc-CCCCCH-HHHHHHHHhhcCCCCccEEEE
Q 004001 98 STRHVVAALLRNCGYEVTE----ATNGLQAWKILEDLTNHIDLVL---TEV-MPCLSG-VALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 98 ~~r~~L~~lL~~~GyeV~~----A~dg~eALe~L~~~~~~pDLVL---lDi-MP~mdG-leLl~~IRs~~~~~~iPIIvL 168 (780)
.....+.+.+++.|..+.. +-+ ..-.+.+... ...|+|+ ... -|+.+| .+-++.||+.. ...+||++
T Consensus 93 ~~l~~~~~~~~~~g~~~~~~ll~~~t-~~~~~~l~~~-~~~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~-~~~~~i~v- 168 (216)
T 1q6o_A 93 NTAKGALDVAKEFNGDVQIELTGYWT-WEQAQQWRDA-GIGQVVYHRSRDAQAAGVAWGEADITAIKRLS-DMGFKVTV- 168 (216)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCC-HHHHHHHHHT-TCCEEEEECCHHHHHTTCCCCHHHHHHHHHHH-HTTCEEEE-
T ss_pred HHHHHHHHHHHHcCCCceeeeeeCCC-hhhHHHHHhc-CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-CCCCcEEE-
Confidence 3334455556667777422 323 3333444432 2356666 222 388887 77777776543 12455554
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 207 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~-----KP~~~eeL~~~L~~llr 207 (780)
++--..+...+++++||+.++. +.-++.+....++..++
T Consensus 169 ~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~ 212 (216)
T 1q6o_A 169 TGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 212 (216)
T ss_dssp ESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred ECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHH
Confidence 4444466678899999988764 33345555555544443
No 421
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=26.43 E-value=2.3e+02 Score=26.46 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=57.3
Q ss_pred EEEEEe--CCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCC--HHHHHHHHHhhcCCCCc
Q 004001 89 KVLLVE--NDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLS--GVALLSKIMSHKTRKNL 163 (780)
Q Consensus 89 rVLIVD--DD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~md--GleLl~~IRs~~~~~~i 163 (780)
+|+|+. ........+...|...|..+.... +..+....+... ..=|+||+=-..+.. -+++++.+++ ..+
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~d~~i~iS~sG~t~~~~~~~~~ak~----~g~ 115 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL-RPTDLMIGVSVWRYLRDTVAALAGAAE----RGV 115 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC-CTTEEEEEECCSSCCHHHHHHHHHHHH----TTC
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHH----CCC
Confidence 566664 344556677788888899998887 566665555432 234666552255543 3556666654 358
Q ss_pred cEEEEecCCCHHHHHHHHHCCCCeEEeCC
Q 004001 164 PVIMMSSLDSMGLVFKCLSKGAVDFLVKP 192 (780)
Q Consensus 164 PIIvLSa~~~~e~~~~al~aGAddyL~KP 192 (780)
+||++|......... -++-.|.-|
T Consensus 116 ~vi~IT~~~~s~l~~-----~ad~~l~~~ 139 (187)
T 3sho_A 116 PTMALTDSSVSPPAR-----IADHVLVAA 139 (187)
T ss_dssp CEEEEESCTTSHHHH-----HCSEEEECC
T ss_pred CEEEEeCCCCCcchh-----hCcEEEEec
Confidence 999999976654332 245555544
No 422
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=26.37 E-value=1.9e+02 Score=28.39 Aligned_cols=64 Identities=11% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+... .+.++.+.. ..+|-||+-. ... + ++++.+++ ..+|||++-..
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~~ 101 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG--RQIGGIILLYSREN-D--RIIQYLHE----QNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT--TCCCEEEESCCBTT-C--HHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC-h--HHHHHHHH----CCCCEEEECCC
Confidence 3445666677889988865432 223455544 5788887743 222 1 56666643 35899888654
No 423
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=26.37 E-value=2.4e+02 Score=26.25 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=43.8
Q ss_pred EEEEEeCCHHH--HHHHHHHHHhCCCEEEE-E-C---CHHHHHHHHHh--cCCCceEEEEcc-CCCCC--H-------HH
Q 004001 89 KVLLVENDDST--RHVVAALLRNCGYEVTE-A-T---NGLQAWKILED--LTNHIDLVLTEV-MPCLS--G-------VA 149 (780)
Q Consensus 89 rVLIVDDD~~~--r~~L~~lL~~~GyeV~~-A-~---dg~eALe~L~~--~~~~pDLVLlDi-MP~md--G-------le 149 (780)
|||++.|.-.. ...+...|... +.|.. . . .....++.+.. ....||+|++.+ .-+.. - -+
T Consensus 22 rVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ 100 (200)
T 4h08_A 22 HVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKNTKFDVIHFNNGLHGFDYTEEEYDKSFPK 100 (200)
T ss_dssp EEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHHSCCSEEEECCCSSCTTSCHHHHHHHHHH
T ss_pred eEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhcCCCCeEEEEeeeCCCCCCHHHHHHHHHH
Confidence 89999997543 23345555432 34442 1 1 12233333321 125799999977 65432 1 23
Q ss_pred HHHHHHhhcCCCCccEEEEecC
Q 004001 150 LLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~ 171 (780)
++++||+. .+.++||+++..
T Consensus 101 ii~~l~~~--~p~~~ii~~~~~ 120 (200)
T 4h08_A 101 LIKIIRKY--APKAKLIWANTT 120 (200)
T ss_dssp HHHHHHHH--CTTCEEEEECCC
T ss_pred HHHHHhhh--CCCccEEEeccC
Confidence 56666543 467888888754
No 424
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=26.35 E-value=14 Score=39.45 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=4.1
Q ss_pred cchhhhhh
Q 004001 745 VRYQSRKR 752 (780)
Q Consensus 745 i~y~~rk~ 752 (780)
|+|+.+|.
T Consensus 161 l~yAv~~L 168 (315)
T 1uoz_A 161 VRYAVDTL 168 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45555544
No 425
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.32 E-value=3.3e+02 Score=26.57 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||++..+.. .. +.++.+.. ..+|.||+-. .. +. +.++.+++ ...+|||++...
T Consensus 39 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~--~~-~~~~~l~~---~~~iPvV~~~~~ 110 (296)
T 3brq_A 39 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPRFL--SV-DEIDDIID---AHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH--TTCSEEEEECSSS--CH-HHHHHHHH---TCSSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCC--Ch-HHHHHHHh---cCCCCEEEEccc
Confidence 455667777788999886643 22 34555554 5688877643 22 22 45566643 146899888543
No 426
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=26.25 E-value=71 Score=29.40 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=43.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gye--V~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
.+|..||-++...+.++..+...++. +. ...+..+.+..+ ...||+|++|. .....-.++++.|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL---TGRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB---CSCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh---cCCCCEEEECCCCCcchHHHHHHHHH
Confidence 37999999999999999999887753 44 455655544332 24699999986 32122234566664
No 427
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=26.25 E-value=2e+02 Score=31.44 Aligned_cols=87 Identities=22% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCC---EEEEECC----HHHHHHHHHhcCCCceEEEEccCCC--CCHHHHHHHHHhh---cCCCCccEEE
Q 004001 100 RHVVAALLRNCGY---EVTEATN----GLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSH---KTRKNLPVIM 167 (780)
Q Consensus 100 r~~L~~lL~~~Gy---eV~~A~d----g~eALe~L~~~~~~pDLVLlDiMP~--mdGleLl~~IRs~---~~~~~iPIIv 167 (780)
...++.+.+..+. -++.+++ ..+|++.+... ..+|.|.+|-|.. .+-.++++++++. ...++ ..|+
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvDT~d~~~~~al~~a~~l-~~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~-~~I~ 274 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMF-DKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSD-IKIM 274 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTTC-SCCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTT-SEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCchHHHHHHHHHHHhh-cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCc-eEEE
Confidence 5667777766653 2334554 46777776532 2689999998543 6667777777642 11234 4788
Q ss_pred EecCCCHHHHHHHHHCCCCeE
Q 004001 168 MSSLDSMGLVFKCLSKGAVDF 188 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddy 188 (780)
.|+.-+.+.+.+..+.|+|.|
T Consensus 275 aSggl~~~~i~~l~~~GvD~~ 295 (398)
T 2i1o_A 275 VSGGLDENTVKKLREAGAEAF 295 (398)
T ss_dssp EESSCCHHHHHHHHHTTCCEE
T ss_pred EeCCCCHHHHHHHHHcCCCEE
Confidence 899999999999999999444
No 428
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=26.08 E-value=1.7e+02 Score=30.48 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=59.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEEE-EC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNC-GYEVTE-AT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~-A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
..+|||-||---..-+..+...|... +++|+. ++ +.+.|-+..++ ..+.-++.|+ -++ |. . +
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~g~~~~y~d~------~el---l~-~---~ 85 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR--FSVPHAFGSY------EEM---LA-S---D 85 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH--HTCSEEESSH------HHH---HH-C---S
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH--cCCCeeeCCH------HHH---hc-C---C
Confidence 35689999987766555444555544 678774 43 33344444443 2222234342 112 21 1 3
Q ss_pred CccEEEEecCC--CHHHHHHHHHCCCCeEEeCCCC--HHHHHHHHHHH
Q 004001 162 NLPVIMMSSLD--SMGLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (780)
Q Consensus 162 ~iPIIvLSa~~--~~e~~~~al~aGAddyL~KP~~--~eeL~~~L~~l 205 (780)
++-+|+++... -.+.+.+|+++|..=|+-||+. .++...++..+
T Consensus 86 ~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 133 (350)
T 4had_A 86 VIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAAR 133 (350)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHH
Confidence 34455554433 3467889999999999999974 45555555443
No 429
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=26.02 E-value=1.8e+02 Score=32.93 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------CCCHHHHHHHHHhhc----CCCCccEEE
Q 004001 100 RHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------CLSGVALLSKIMSHK----TRKNLPVIM 167 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP------~mdGleLl~~IRs~~----~~~~iPIIv 167 (780)
.+.|..+-+..+.-|+ .+.+.++|..+.+ ..+|.|++.-.. ....++++..+++.- ....+|||+
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~---aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia 408 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAE---IGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHH---TTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHH---cCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEE
Confidence 4445555555565443 4677777776654 458888884311 123466776665421 124799999
Q ss_pred EecCCCHHHHHHHHHCCCCeEEe-CCCC
Q 004001 168 MSSLDSMGLVFKCLSKGAVDFLV-KPIR 194 (780)
Q Consensus 168 LSa~~~~e~~~~al~aGAddyL~-KP~~ 194 (780)
-.+-....++.+++.+||+.+.. .|+-
T Consensus 409 ~GGI~~g~Dv~kaLalGAdaV~iGr~~l 436 (511)
T 1kbi_A 409 DGGVRRGTDVLKALCLGAKGVGLGRPFL 436 (511)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred ECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 99999999999999999998754 4543
No 430
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=25.82 E-value=1.1e+02 Score=31.26 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=44.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC--H---HHHHHHH
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCG-----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS--G---VALLSKI 154 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~G-----yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md--G---leLl~~I 154 (780)
..+|..||-++.+.+..+..|...+ -+|. ...|+.+.+... ...||+||+|. .|... . .++++.+
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~ 178 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKI 178 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTTTGGGGGSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 3589999999999999888876431 1233 566776655432 35799999998 55322 1 3666666
Q ss_pred Hh
Q 004001 155 MS 156 (780)
Q Consensus 155 Rs 156 (780)
++
T Consensus 179 ~~ 180 (283)
T 2i7c_A 179 YN 180 (283)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 431
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=25.81 E-value=1.4e+02 Score=30.59 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=53.7
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVE-NDDS---TRHVVAALLRNCGYEVT---EA----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVD-DD~~---~r~~L~~lL~~~GyeV~---~A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-||.||. |+.. ....++..|++.|++|. .. .+....+..+.. ..+|+||+.. ...+...+++.+++
T Consensus 160 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~--~~~dav~~~~-~~~~a~~~~~~~~~ 236 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIA--TKPDAVFIAS-AGTPAVLPQKALRE 236 (386)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHH--TCCSEEEEEC-CSGGGHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHh--cCCCEEEEec-CcchHHHHHHHHHH
Confidence 4666554 4443 34556677777788764 22 355667777776 5789998754 23456788888876
Q ss_pred hcCCCCccEEEEecCCCHHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLVF 178 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~~ 178 (780)
.. ...|+|......+.+...
T Consensus 237 ~g--~~~~~~~~~~~~~~~~~~ 256 (386)
T 3sg0_A 237 RG--FKGAIYQTHGVATEEFIK 256 (386)
T ss_dssp TT--CCSEEECCGGGCSHHHHH
T ss_pred cC--CCCcEEeccccCCHHHHH
Confidence 54 346776665655555443
No 432
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=25.79 E-value=14 Score=40.58 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=6.9
Q ss_pred cchhhhhhhhhhCCCccc
Q 004001 745 VRYQSRKRLAEQRPRIRG 762 (780)
Q Consensus 745 i~y~~rk~~a~~r~r~~g 762 (780)
||+.-+-.-.+.|=+|+|
T Consensus 104 IrDn~~L~p~~Y~I~i~g 121 (389)
T 3a5i_A 104 IRDNMDLQPARYRILMKG 121 (389)
T ss_dssp EEECTTSCTTEEEEEETT
T ss_pred EEeCCCCCCCeEEEEECC
Confidence 444333332333334444
No 433
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=25.67 E-value=84 Score=32.19 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCCCccEEEEecCC--CH--HHHHHHHHCCCCeEEeCCCC--HHHHHHHHHHH
Q 004001 147 GVALLSKIMSHKTRKNLPVIMMSSLD--SM--GLVFKCLSKGAVDFLVKPIR--KNELKNLWQHV 205 (780)
Q Consensus 147 GleLl~~IRs~~~~~~iPIIvLSa~~--~~--e~~~~al~aGAddyL~KP~~--~eeL~~~L~~l 205 (780)
|.-+++.+. ..+|||+..... .. .......+.|. +++..|-+ .++|..+|..+
T Consensus 264 ~~~~~EAma-----~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAA-----AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHH-----HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHH-----hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 677777774 247888663321 11 11334556787 99999865 89999888754
No 434
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.58 E-value=3.7e+02 Score=26.79 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC----CHHH---HHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 99 TRHVVAALLRNCGYEVTEAT----NGLQ---AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~----dg~e---ALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
+...+...+++.||++..+. +... .++.+.. ..+|.||+-. .+. .-.+.++++++ ..+|||++..
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 90 (313)
T 2h3h_A 18 VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA--EGVNGIAIAPSDPT-AVIPTIKKALE----MGIPVVTLDT 90 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH--TTCSEEEECCSSTT-TTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH-HHHHHHHHHHH----CCCeEEEeCC
Confidence 34556666777899988653 2333 3444444 5689888754 222 12345666643 3589998865
Q ss_pred C
Q 004001 171 L 171 (780)
Q Consensus 171 ~ 171 (780)
.
T Consensus 91 ~ 91 (313)
T 2h3h_A 91 D 91 (313)
T ss_dssp C
T ss_pred C
Confidence 4
No 435
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=25.49 E-value=3e+02 Score=26.19 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=46.2
Q ss_pred ECCHHHHHHHHHhc-CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCC
Q 004001 117 ATNGLQAWKILEDL-TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 117 A~dg~eALe~L~~~-~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~ 194 (780)
..+.+++.++++.. ...+++|-+.+ .| .+.+.++.+|+... .+. +|.+..-.+.+....+.++|||.+ .-|..
T Consensus 18 ~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~-~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~ 92 (205)
T 1wa3_A 18 ANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKE-KGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHL 92 (205)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHH-TTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCC-CCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCC
Confidence 34555554444321 13467775555 44 56777888876421 133 333433346777889999999766 66765
Q ss_pred HHHHHHHH
Q 004001 195 KNELKNLW 202 (780)
Q Consensus 195 ~eeL~~~L 202 (780)
..++....
T Consensus 93 ~~~~~~~~ 100 (205)
T 1wa3_A 93 DEEISQFC 100 (205)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 55554443
No 436
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=25.43 E-value=2.7e+02 Score=24.58 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=54.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPII 166 (780)
+.+|+|+.--. +-..+...|...|++|+.+..-.+.++.+.. ..+.++..|. .-.+.++.+ . ....-+|
T Consensus 6 ~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--~~~~~~~gd~----~~~~~l~~~---~-~~~~d~v 74 (141)
T 3llv_A 6 RYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLED--EGFDAVIADP----TDESFYRSL---D-LEGVSAV 74 (141)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEECCT----TCHHHHHHS---C-CTTCSEE
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--CCCcEEECCC----CCHHHHHhC---C-cccCCEE
Confidence 34799998755 5667777788889999987777777777765 3466666665 112344433 1 2234455
Q ss_pred EEecCCCHHH---HHHHHHCCCCeEEe
Q 004001 167 MMSSLDSMGL---VFKCLSKGAVDFLV 190 (780)
Q Consensus 167 vLSa~~~~e~---~~~al~aGAddyL~ 190 (780)
+++...+... ...+.+.|..-.+.
T Consensus 75 i~~~~~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 75 LITGSDDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp EECCSCHHHHHHHHHHHHHHCCCCEEE
T ss_pred EEecCCHHHHHHHHHHHHHhCCceEEE
Confidence 5555443222 33344566333343
No 437
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.19 E-value=5.7e+02 Score=26.20 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=68.1
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC---EEEEE---CCHHHHHHHHHhc--CCCceEEEEcc--C-CCCCHHHHHHH
Q 004001 89 KVLLVENDDSTRHVVAALL----RNCGY---EVTEA---TNGLQAWKILEDL--TNHIDLVLTEV--M-PCLSGVALLSK 153 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL----~~~Gy---eV~~A---~dg~eALe~L~~~--~~~pDLVLlDi--M-P~mdGleLl~~ 153 (780)
-.|+..++..........| ...++ .++.. .+..+.++.+... ....-|||+|- + ...++.+.+..
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~ 99 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLT 99 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHH
Confidence 3566677764443322222 22354 23332 2344444444321 13456888885 6 66677665444
Q ss_pred HHhhcCCCCccEEEEecCCC----HHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHHH
Q 004001 154 IMSHKTRKNLPVIMMSSLDS----MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 208 (780)
Q Consensus 154 IRs~~~~~~iPIIvLSa~~~----~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llrr 208 (780)
+-+.+ .+++.+|+++...+ ...+...+..-+.-|-.+|++..+|...|...++.
T Consensus 100 ~le~p-~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 100 LTGLL-HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp HHTTC-BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred HHhcC-CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 43332 34666666665433 23455666666667888999999999999888764
No 438
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=25.15 E-value=1.3e+02 Score=31.73 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 149 eLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
+.++++|+. .+..||.+-.. +.+.+.+++++|+|-.+..-+++++|..+++.+
T Consensus 187 ~Av~~ar~~--~~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 187 KAVTKAKKL--DSNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHH--CTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhh--CCCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 566777654 36678777443 457888999999999999999999999888764
No 439
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=25.13 E-value=15 Score=37.85 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 004001 609 HYDNCHHLVHNMQQ 622 (780)
Q Consensus 609 ~~~~~~~~~~~~~~ 622 (780)
||||||||+|.+++
T Consensus 3 ~~~~~~~~~~~~~~ 16 (286)
T 1jr2_A 3 HHHHHHHHHHSSGH 16 (286)
T ss_dssp --------------
T ss_pred cccccccccccccc
No 440
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.08 E-value=2e+02 Score=26.76 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=27.8
Q ss_pred CceEEEEccCCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 133 HIDLVLTEVMPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 133 ~pDLVLlDiMP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..|+||+- +|+.. -..++..++.. .+...||+.+. +.+....+.+.|++..+.
T Consensus 105 ~ad~vi~~-~~~~~~~~~~~~~~~~~--~~~~~ii~~~~--~~~~~~~l~~~G~~~vi~ 158 (183)
T 3c85_A 105 HVKLVLLA-MPHHQGNQTALEQLQRR--NYKGQIAAIAE--YPDQLEGLLESGVDAAFN 158 (183)
T ss_dssp CCCEEEEC-CSSHHHHHHHHHHHHHT--TCCSEEEEEES--SHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEe-CCChHHHHHHHHHHHHH--CCCCEEEEEEC--CHHHHHHHHHcCCCEEEc
Confidence 46777753 23222 23344555432 34566666554 344555666789875544
No 441
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=25.03 E-value=3.2e+02 Score=24.53 Aligned_cols=96 Identities=9% Similarity=-0.019 Sum_probs=47.6
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 87 SLKVLLVEND-DSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 87 ~lrVLIVDDD-~~~r~~L~~lL~~~GyeV~~A~d-g~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
+..|.+||.+ +...+.+...+ ..|+.++...- -.+.|+.+.- ...|+||+-+-.+..-+.++..+|+. .+..+
T Consensus 26 g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~~~d~~n~~~~~~a~~~--~~~~~ 100 (153)
T 1id1_A 26 GQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGI--DRCRAILALSDNDADNAFVVLSAKDM--SSDVK 100 (153)
T ss_dssp TCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTT--TTCSEEEECSSCHHHHHHHHHHHHHH--TSSSC
T ss_pred CCCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcCh--hhCCEEEEecCChHHHHHHHHHHHHH--CCCCE
Confidence 4567788776 34333444332 23566553221 1233433321 45788887541111223334444432 35567
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEE
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFL 189 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL 189 (780)
||+...... .......+|++..+
T Consensus 101 ii~~~~~~~--~~~~l~~~G~~~vi 123 (153)
T 1id1_A 101 TVLAVSDSK--NLNKIKMVHPDIIL 123 (153)
T ss_dssp EEEECSSGG--GHHHHHTTCCSEEE
T ss_pred EEEEECCHH--HHHHHHHcCCCEEE
Confidence 777654433 33445678998555
No 442
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=25.01 E-value=1.7e+02 Score=31.72 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=37.8
Q ss_pred cEEEEEeCCHHHHH--HHHHHHHhC-CCEEEEECCH---------HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004001 88 LKVLLVENDDSTRH--VVAALLRNC-GYEVTEATNG---------LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (780)
Q Consensus 88 lrVLIVDDD~~~r~--~L~~lL~~~-GyeV~~A~dg---------~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IR 155 (780)
-|+|||-|+..... .+..++..+ |+++..+..+ .++++.+++ ..+|+||- +-+..-+++.+.+.
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGsviD~AK~iA 126 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVRE--QKVTFLLA--VGGGSVLDGTKFIA 126 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHH--HTCCEEEE--EESHHHHHHHHHHH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHH--cCCCEEEE--eCCchHHHHHHHHH
Confidence 48999987664433 344443333 7777665532 345666665 56788773 34445566666664
Q ss_pred h
Q 004001 156 S 156 (780)
Q Consensus 156 s 156 (780)
.
T Consensus 127 ~ 127 (408)
T 1oj7_A 127 A 127 (408)
T ss_dssp H
T ss_pred H
Confidence 3
No 443
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=24.99 E-value=1.9e+02 Score=29.50 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CC----------EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HH
Q 004001 88 LKVLLVENDDSTRHVVAALLRNC--GY----------EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GV 148 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~--Gy----------eV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~md-----Gl 148 (780)
.+|..||-++...+..+..+ .. ++ +|. ...|+.+.+.. ...||+||+|. .|... ..
T Consensus 99 ~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~----~~~fD~Ii~d~~~~~~~~~~l~~~ 173 (281)
T 1mjf_A 99 DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----NRGFDVIIADSTDPVGPAKVLFSE 173 (281)
T ss_dssp SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----CCCEEEEEEECCCCC-----TTSH
T ss_pred CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc----cCCeeEEEECCCCCCCcchhhhHH
Confidence 48999999999999888877 33 22 233 45676665543 26799999998 54211 24
Q ss_pred HHHHHHHh
Q 004001 149 ALLSKIMS 156 (780)
Q Consensus 149 eLl~~IRs 156 (780)
++++.+++
T Consensus 174 ~~l~~~~~ 181 (281)
T 1mjf_A 174 EFYRYVYD 181 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55666643
No 444
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=24.95 E-value=1.3e+02 Score=29.78 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=38.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-------dg~eALe~L~~~~~~pDLVLlDi 141 (780)
++|||..-.-.+-..|...|...|++|+.+. +.+...+.+.. ..+|+||.-.
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~--~~~d~vi~~a 64 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE--IRPHIIIHCA 64 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH--HCCSEEEECC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh--cCCCEEEECC
Confidence 5899999988888888888888899998664 34444444543 2589888654
No 445
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.84 E-value=3.2e+02 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=21.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTE 116 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~ 116 (780)
..+||||......+.++..+....||+++.
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg 33 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIA 33 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 347899998888877776665555888773
No 446
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.56 E-value=1.4e+02 Score=29.73 Aligned_cols=63 Identities=10% Similarity=0.228 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
...+...+++.||.+..+... .+.++.+.. ..+|-||+-. ... -++++.++. ..+|||++-..
T Consensus 31 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~---~~~~~~l~~----~~iPvV~i~~~ 100 (295)
T 3hcw_A 31 LLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ--RMVDAFILLYSKEN---DPIKQMLID----ESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT--TCCSEEEESCCCTT---CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh--CCcCEEEEcCcccC---hHHHHHHHh----CCCCEEEECCC
Confidence 344666677789998865432 124555554 6788887743 211 255666643 35899888654
No 447
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=24.47 E-value=16 Score=43.42 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=5.6
Q ss_pred CCCCCcccc
Q 004001 566 SSFQPTKND 574 (780)
Q Consensus 566 s~f~p~~~~ 574 (780)
.=|.||+++
T Consensus 694 ~lFe~V~~~ 702 (724)
T 3rce_A 694 DLFEQVTND 702 (724)
T ss_dssp TTCCEEEEE
T ss_pred hhhhhhhcC
Confidence 467776655
No 448
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=24.46 E-value=2.5e+02 Score=29.27 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=56.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCH-HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVTEATNG-LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~-GyeV~~A~dg-~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~i 163 (780)
+.+||.||.--..-+......|... +++++.+.+. .+..+ . ..+.+-+.+ |--++ |. . +++
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~--~~~~~~~~~-----~~~~l---l~-~---~~v 68 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---A--DWPAIPVVS-----DPQML---FN-D---PSI 68 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---T--TCSSCCEES-----CHHHH---HH-C---SSC
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---h--hCCCCceEC-----CHHHH---hc-C---CCC
Confidence 4589999987766555344455544 7887743332 22222 2 111111111 11122 21 1 234
Q ss_pred cEEEEecCC--CHHHHHHHHHCCCCeEEeCC--CCHHHHHHHHHHH
Q 004001 164 PVIMMSSLD--SMGLVFKCLSKGAVDFLVKP--IRKNELKNLWQHV 205 (780)
Q Consensus 164 PIIvLSa~~--~~e~~~~al~aGAddyL~KP--~~~eeL~~~L~~l 205 (780)
-+|+++... ..+.+..|+++|..=|+-|| .+.++...++..+
T Consensus 69 D~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a 114 (352)
T 3kux_A 69 DLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHA 114 (352)
T ss_dssp CEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHH
Confidence 444444332 35667889999999999999 4667776666544
No 449
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.38 E-value=1.7e+02 Score=28.92 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecC
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSL 171 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~ 171 (780)
+...+...+++.||.+..+.. .. +.++.+.. ..+|-||+-. .. ..+++++++ ...+|||++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~---~~~~~~~~~----~~~iPvV~~~~~ 96 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE--RRVDGLILAPSEG---EHDYLRTEL----PKTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCSS---CCHHHHHSS----CTTSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCC---ChHHHHHhh----ccCCCEEEEecc
Confidence 345566677788999886543 22 24555554 5789888754 22 234555553 246899988654
Q ss_pred C
Q 004001 172 D 172 (780)
Q Consensus 172 ~ 172 (780)
.
T Consensus 97 ~ 97 (291)
T 3egc_A 97 L 97 (291)
T ss_dssp C
T ss_pred c
Confidence 4
No 450
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=24.34 E-value=2.7e+02 Score=27.23 Aligned_cols=83 Identities=11% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCH-HHHHHHHHhhcCCCC
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSG-VALLSKIMSHKTRKN 162 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~-dg~eALe~L~~~~~~pDLVLlDiMP~mdG-leLl~~IRs~~~~~~ 162 (780)
+.+.+|||..-..-+-..+...|.+.|++|+.+. +...+-+...+....+..+.+|+ .+.+. .++++.+.+.. ..
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~--g~ 83 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADI-SKEADVDAAVEAALSKF--GK 83 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCT-TSHHHHHHHHHHHHHHH--SC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecC-CCHHHHHHHHHHHHHhc--CC
Confidence 4556899999888888888888888999988554 44443333333223455555565 33333 34556664432 34
Q ss_pred ccEEEEec
Q 004001 163 LPVIMMSS 170 (780)
Q Consensus 163 iPIIvLSa 170 (780)
+-+|+..+
T Consensus 84 id~li~~A 91 (261)
T 3n74_A 84 VDILVNNA 91 (261)
T ss_dssp CCEEEECC
T ss_pred CCEEEECC
Confidence 55666554
No 451
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=24.29 E-value=2.2e+02 Score=27.82 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 100 RHVVAALLRNCGYEVTEAT---NGL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~---dg~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
...+...++..||.+..+. +.. +.++.+.. ..+|-||+-. .+. .-.++++++++ ..+|||++-.
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~i~~ 90 (271)
T 2dri_A 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSD-AVGNAVKMANQ----ANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTT--TTEEEEEECCSSTT-TTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH-HHHHHHHHHHH----CCCcEEEecC
Confidence 3445666777899987653 222 23444443 5799888743 221 11345666643 3589998854
No 452
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=24.19 E-value=16 Score=35.83 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.3
Q ss_pred HHHHHhh
Q 004001 729 VTKYRQK 735 (780)
Q Consensus 729 ~~~~~~k 735 (780)
+.|+|+|
T Consensus 117 iNklk~~ 123 (174)
T 2oar_A 117 YNTLRKK 123 (174)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 4455444
No 453
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=24.11 E-value=2e+02 Score=28.56 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCCceEE-EEcc-CC---CCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 119 NGLQAWKILEDLTNHIDLV-LTEV-MP---CLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 119 dg~eALe~L~~~~~~pDLV-LlDi-MP---~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
+..+..+.+.+ ..+|.| |.|. -. ...-++++++|++. ..+|||+--.-.+.+.+.++++.||+..+.
T Consensus 36 ~~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 44455555554 334533 4554 21 12237888998653 368999988888889999999999887764
No 454
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=24.10 E-value=4e+02 Score=29.74 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=60.3
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-C-CEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC
Q 004001 87 SLKVLLVEND----DSTRHVVAALLRNC-G-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (780)
Q Consensus 87 ~lrVLIVDDD----~~~r~~L~~lL~~~-G-yeV~--~A~dg~eALe~L~~~~~~pDLVLlDiMP~------------md 146 (780)
++++|+|+-+ ......+..+-... + ..|. .+.+.++|..+++. ..|+|.+..-|+ ..
T Consensus 254 gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~a---Gad~I~Vg~~~g~~~~~r~~~~~g~p 330 (503)
T 1me8_A 254 GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADA---GADFIKIGIGGGSICITREQKGIGRG 330 (503)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCSTTTTCCCCC
T ss_pred hccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHh---CCCeEEecccCCcCcccccccCCCCc
Confidence 4567877533 22333343222222 3 3333 57888888887764 468787643231 22
Q ss_pred HHHHHHHHHhhcC------CCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 147 GVALLSKIMSHKT------RKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 147 GleLl~~IRs~~~------~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
-+.++..+.+... ...+|||+=.+-.....+.+|+.+||+....
T Consensus 331 ~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~i 380 (503)
T 1me8_A 331 QATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIML 380 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444432110 1158998877888899999999999998775
No 455
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=24.08 E-value=7.4e+02 Score=27.18 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=71.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-------------------------EEC--C---HHHHHHHHHhcCCCce
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-------------------------EAT--N---GLQAWKILEDLTNHID 135 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~-------------------------~A~--d---g~eALe~L~~~~~~pD 135 (780)
++-+|.||-+---...+....+...|.++- ... + ..++++.+.+ ...+|
T Consensus 292 ~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~-dp~vd 370 (457)
T 2csu_A 292 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ-DPNVD 370 (457)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH-STTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhc-CCCCC
Confidence 355899998888888888888888877741 111 1 3556776654 26789
Q ss_pred EEEEcc-CCCC-----CH--HHHHHHHHhhcCCCCccEEEEe--cCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 136 LVLTEV-MPCL-----SG--VALLSKIMSHKTRKNLPVIMMS--SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 136 LVLlDi-MP~m-----dG--leLl~~IRs~~~~~~iPIIvLS--a~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
.||+++ .+.. +. -.+++.|++.. ...||+++. .....+......+.|+--| -++++-..++.++
T Consensus 371 ~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~--~~kPvvv~~~~g~~~~~~~~~L~~~Gip~~----~spe~Av~al~~l 444 (457)
T 2csu_A 371 MLIAICVVPTFAGMTLTEHAEGIIRAVKEVN--NEKPVLAMFMAGYVSEKAKELLEKNGIPTY----ERPEDVASAAYAL 444 (457)
T ss_dssp EEEEEEECCCSTTCCSSHHHHHHHHHHHHHC--CCCCEEEEEECTTTTHHHHHHHHTTTCCEE----SSHHHHHHHHHHH
T ss_pred EEEEEccccccccCCchhHHHHHHHHHHHhc--CCCCEEEEeCCCcchHHHHHHHHhCCCCcc----CCHHHHHHHHHHH
Confidence 999988 5422 21 24666665432 346777633 2223333444446777655 4667777777776
Q ss_pred HHH
Q 004001 206 WRR 208 (780)
Q Consensus 206 lrr 208 (780)
++.
T Consensus 445 ~~~ 447 (457)
T 2csu_A 445 VEQ 447 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 456
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=24.07 E-value=92 Score=28.37 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=42.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IR 155 (780)
..+|..||-++...+..+..+...|+. +....+..+. +......||+|++.. +.. ..+++.+.
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~---~~~l~~~~ 114 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA---PGVFAAAW 114 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC---TTHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH---HHHHHHHH
Confidence 358999999999999999998887763 5444454332 222115699999988 655 34555553
No 457
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=23.99 E-value=2.1e+02 Score=32.37 Aligned_cols=54 Identities=6% Similarity=0.105 Sum_probs=32.2
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATN---G----LQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~d---g----~eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+||+.|.. ..+.+...-...++.++.... . .++++.+.. ..+|+||+|.
T Consensus 128 ~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~--~~~DvvIIDT 191 (504)
T 2j37_W 128 KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN--ENFEIIIVDT 191 (504)
T ss_dssp TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH--CCCcEEEEeC
Confidence 3678999998752 223333333445666655322 2 345555543 4689999997
No 458
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=23.96 E-value=5.5e+02 Score=25.63 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=68.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC--EEEEE-CCHHHHHHHHHhc-C-CCceEEEEc----------c-CC----CCCHH
Q 004001 89 KVLLVENDDSTRHVVAALLRNCGY--EVTEA-TNGLQAWKILEDL-T-NHIDLVLTE----------V-MP----CLSGV 148 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~~Gy--eV~~A-~dg~eALe~L~~~-~-~~pDLVLlD----------i-MP----~mdGl 148 (780)
+|+++-..+.+...+..++..... ++..+ .+.++++..+++. . ..+|+||.- + .| ..+|+
T Consensus 14 ~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs~~ 93 (225)
T 2pju_A 14 PVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGY 93 (225)
T ss_dssp CEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCCHH
T ss_pred CEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCCHH
Confidence 567777777778888888876553 44443 4577787766542 2 248888852 1 23 46899
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCHHH---HHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGL---VFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 149 eLl~~IRs~~~~~~iPIIvLSa~~~~e~---~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
++++.|..-.... -.|-+++-...... +...+ |.+-.+.-..+.+++...|..+.+
T Consensus 94 Dil~aL~~a~~~~-~kIavVg~~~~~~~~~~i~~ll--~~~i~~~~~~~~ee~~~~i~~l~~ 152 (225)
T 2pju_A 94 DVLQFLAKAGKLT-SSIGVVTYQETIPALVAFQKTF--NLRLDQRSYITEEDARGQINELKA 152 (225)
T ss_dssp HHHHHHHHTTCTT-SCEEEEEESSCCHHHHHHHHHH--TCCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CcEEEEeCchhhhHHHHHHHHh--CCceEEEEeCCHHHHHHHHHHHHH
Confidence 9999886543322 24555544333222 23333 443333334567888888887654
No 459
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=23.93 E-value=1.4e+02 Score=31.42 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=44.4
Q ss_pred ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeC
Q 004001 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVK 191 (780)
Q Consensus 134 pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~K 191 (780)
.+||.+|. - ..-..+++++|++.- ...+||++=-+-.+.+.+.+++.+||+.+++-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 58999998 5 333478999997642 12689998888889999999999999999875
No 460
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=23.92 E-value=2.5e+02 Score=27.63 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEec
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa 170 (780)
+...+...+++.||.+..+.. .. +.++.+.. ..+|-||+-. .+. .-.+.++.+++ ..+|||++-.
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 90 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQ--QKVDVLLINPVDSD-AVVTAIKEANS----KNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSTT-TTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCCchh-hhHHHHHHHHH----CCCeEEEecC
Confidence 344556667778999886532 22 34555544 5789888743 221 11345666643 3589988854
No 461
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=23.76 E-value=1.1e+02 Score=31.43 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=54.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHH------------HHHHHHhcCCCceEEEEccCCC--------
Q 004001 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQ------------AWKILEDLTNHIDLVLTEVMPC-------- 144 (780)
Q Consensus 85 ~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~e------------ALe~L~~~~~~pDLVLlDiMP~-------- 144 (780)
+.+++|+|++.+......+ ..|.+.|++|....-.++ ..+.+ ...|+||+-. |.
T Consensus 5 ~~~mki~v~~~~~~~~~~~-~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~----~~~d~ii~~~-~~~~~~~~i~ 78 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEII-RKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPF----QQIDSIILPV-SATTGEGVVS 78 (300)
T ss_dssp CCSCEEEEESBCHHHHHHH-HHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCG----GGCSEEECCS-SCEETTTEEC
T ss_pred ccCCEEEEECCCHHHHHHH-HHHHhCCCEEEEEeccccccccccceeccchHHHH----hcCCEEEecc-ccccCCcccc
Confidence 4567999999887766555 556778999886531111 12222 2478887621 11
Q ss_pred -----CC---HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 145 -----LS---GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 145 -----md---GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.. .-+++..+ +...+|+ +..+..+....+.+.|+.-+-.
T Consensus 79 s~~a~~~~~~~~~~l~~~------~~l~~i~-~g~~~~d~~~~~~~~gi~v~~~ 125 (300)
T 2rir_A 79 TVFSNEEVVLKQDHLDRT------PAHCVIF-SGISNAYLENIAAQAKRKLVKL 125 (300)
T ss_dssp BSSCSSCEECCHHHHHTS------CTTCEEE-ESSCCHHHHHHHHHTTCCEEEG
T ss_pred cccccCCccchHHHHhhc------CCCCEEE-EecCCHHHHHHHHHCCCEEEee
Confidence 11 12333333 4455665 7777766578888999765443
No 462
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=23.76 E-value=1.9e+02 Score=29.19 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~Gy-eV~-~A~dg~eALe~L~~~~~~pDLVLlDi 141 (780)
.+|+.+|-++.....++..++..|+ .|. ...+..+....+......||+||+|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 6899999999999999999998886 343 55676665443321125799999996
No 463
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=23.72 E-value=1.3e+02 Score=30.61 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=32.9
Q ss_pred ccEEEEEeCCHHHH--------------HHHHHHHHhCCCEEEEEC--CHHHHH--HHHHhcCCCceEEEE
Q 004001 87 SLKVLLVENDDSTR--------------HVVAALLRNCGYEVTEAT--NGLQAW--KILEDLTNHIDLVLT 139 (780)
Q Consensus 87 ~lrVLIVDDD~~~r--------------~~L~~lL~~~GyeV~~A~--dg~eAL--e~L~~~~~~pDLVLl 139 (780)
.+||||..+..--. ..|..+|+..||+|.++. +....+ +.|. .+|+||+
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~----~~DvvV~ 73 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD----RCDVLVW 73 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH----TCSEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh----cCCEEEE
Confidence 46899987643211 256888999999998765 544332 3454 4899987
No 464
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=23.71 E-value=1e+02 Score=33.26 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe------C-CCCHHHHHHHHHHHHHHhc
Q 004001 148 VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV------K-PIRKNELKNLWQHVWRRCH 210 (780)
Q Consensus 148 leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~------K-P~~~eeL~~~L~~llrr~~ 210 (780)
++++.+|++. .+++|||...+-.+.+++.+++.+||+.+.. . |.-..++..-|..++.+..
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~G 332 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKR 332 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHcC
Confidence 6778888754 4579999999999999999999999977653 4 7767777777777776653
No 465
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.69 E-value=1.6e+02 Score=28.55 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCEEEEECCH---H---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 100 RHVVAALLRNCGYEVTEATNG---L---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg---~---eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
...+...+++.||.+..+... + +.++.+.. ..+|-||+-. .+. ..+.++++++ ..+|||++....
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~----~~iPvV~~~~~~ 92 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA--RRCDALFVASCLPP--EDDSYRELQD----KGLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCCCS--SCCHHHHHHH----TTCCEEEESSCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCccc--cHHHHHHHHH----cCCCEEEEccCC
Confidence 445566667779988755422 2 34555554 5688887754 322 1345556643 358888876543
No 466
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=23.68 E-value=1.7e+02 Score=29.73 Aligned_cols=93 Identities=10% Similarity=0.037 Sum_probs=60.8
Q ss_pred eCCHHHHHHHHHHHHhC-CCEEEE------E--CCHHHHHHHHHhcCCCceEEEEcc-CC---CCCHHHHHHHHHhhcCC
Q 004001 94 ENDDSTRHVVAALLRNC-GYEVTE------A--TNGLQAWKILEDLTNHIDLVLTEV-MP---CLSGVALLSKIMSHKTR 160 (780)
Q Consensus 94 DDD~~~r~~L~~lL~~~-GyeV~~------A--~dg~eALe~L~~~~~~pDLVLlDi-MP---~mdGleLl~~IRs~~~~ 160 (780)
+|.......++.+++.. |+.|+. + .+..+||++|.+ ..++=||+-= -+ -.+|++++++|.+.. .
T Consensus 100 ~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~--lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~a-~ 176 (224)
T 2bdq_A 100 SNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVA--LGFTRILLHGSSNGEPIIENIKHIKALVEYA-N 176 (224)
T ss_dssp TTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHH--TTCCEEEECSCSSCCCGGGGHHHHHHHHHHH-T
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHH--cCCCEEECCCCCCCCcHHHHHHHHHHHHHhh-C
Confidence 34445566666666543 666663 5 788999999988 5799999875 43 478999999996543 1
Q ss_pred CCccEEEEecCCCHHHHHHHH-HCCCCeEEe
Q 004001 161 KNLPVIMMSSLDSMGLVFKCL-SKGAVDFLV 190 (780)
Q Consensus 161 ~~iPIIvLSa~~~~e~~~~al-~aGAddyL~ 190 (780)
.. ..||.-+--..+.+.+.+ ..|+..|-.
T Consensus 177 ~r-i~Im~GgGV~~~Ni~~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 177 NR-IEIMVGGGVTAENYQYICQETGVKQAHG 206 (224)
T ss_dssp TS-SEEEECSSCCTTTHHHHHHHHTCCEEEE
T ss_pred CC-eEEEeCCCCCHHHHHHHHHhhCCCEEcc
Confidence 22 344444444445555555 578888754
No 467
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=23.60 E-value=17 Score=40.30 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=0.0
Q ss_pred ccccccccccc
Q 004001 608 QHYDNCHHLVH 618 (780)
Q Consensus 608 ~~~~~~~~~~~ 618 (780)
+||||||||+|
T Consensus 498 ~~~~~~~~~~~ 508 (510)
T 4grv_A 498 AHHHHHHHHHH 508 (510)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444333
No 468
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=23.57 E-value=17 Score=36.89 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 004001 609 HYDNCHHLVHNMQQ 622 (780)
Q Consensus 609 ~~~~~~~~~~~~~~ 622 (780)
||||||||+|.+.|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (223)
T 3dfz_A 3 HHHHHHHHHHSSGH 16 (223)
T ss_dssp --------------
T ss_pred ccccccccccccCc
No 469
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=23.54 E-value=78 Score=32.00 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCccEEEEe
Q 004001 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVIMMS 169 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-------leLl~~IRs~~--~~~~iPIIvLS 169 (780)
...+.+.+++.|..+..+-+...-++.++......|+|++=. -|+..| ++-+++||+.. ...+++ |.+.
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~-I~Vd 173 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IEVD 173 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCE-EEEE
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCce-EEEE
Q ss_pred cCCCHHHHHHHHHCCCCeEEe
Q 004001 170 SLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 170 a~~~~e~~~~al~aGAddyL~ 190 (780)
+--..+.+..+.++||+.++.
T Consensus 174 GGI~~~~~~~~~~aGAd~~V~ 194 (231)
T 3ctl_A 174 GSCNQATYEKLMAAGADVFIV 194 (231)
T ss_dssp SCCSTTTHHHHHHHTCCEEEE
T ss_pred CCcCHHHHHHHHHcCCCEEEE
No 470
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=23.46 E-value=40 Score=34.47 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCEEEEECCH--HH----HHHHHHhcCCCceEEEEccCCC----------------CCHHHHHHHHHhhc
Q 004001 101 HVVAALLRNCGYEVTEATNG--LQ----AWKILEDLTNHIDLVLTEVMPC----------------LSGVALLSKIMSHK 158 (780)
Q Consensus 101 ~~L~~lL~~~GyeV~~A~dg--~e----ALe~L~~~~~~pDLVLlDiMP~----------------mdGleLl~~IRs~~ 158 (780)
..|..+|+..+++|...... .+ .++.|. .||+||++-.+. ..-++++++.-+
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~-- 116 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK-- 116 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH--
Confidence 34666667679999877321 01 123343 589988763111 334455555532
Q ss_pred CCCCccEEEEecC
Q 004001 159 TRKNLPVIMMSSL 171 (780)
Q Consensus 159 ~~~~iPIIvLSa~ 171 (780)
....+|++.+.
T Consensus 117 --~GGgll~igG~ 127 (256)
T 2gk3_A 117 --NGGGLLMIGGY 127 (256)
T ss_dssp --TTCEEEEECST
T ss_pred --hCCEEEEECCh
Confidence 24567777654
No 471
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=23.42 E-value=2e+02 Score=31.66 Aligned_cols=108 Identities=10% Similarity=-0.008 Sum_probs=58.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE---EEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004001 87 SLKVLLVENDDSTRHVVAALLRNCGYE---VTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~~Gye---V~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~ 161 (780)
..+++||..+...+..|..+++..|.. |.... +.++..+++.. .||+|+=..- .-|+-+++.+. .
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-~~g~~~lEAma-----~ 475 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRH----ADLFLDTHPY-NAHTTASDALW-----T 475 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGG----CSEEECCSSS-CCSHHHHHHHH-----T
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhc----CCEEeeCCCC-CCcHHHHHHHh-----C
Confidence 345666662333455666666666543 44433 22455555543 5665533322 44677777773 3
Q ss_pred CccEEEEecCC---CHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 162 NLPVIMMSSLD---SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 162 ~iPIIvLSa~~---~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
.+|||.+.... +.. .......|..+++.. +.++|...|..++.
T Consensus 476 G~Pvv~~~g~~~~s~~~-~~~l~~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 476 GCPVLTTPGETFAARVA-GSLNHHLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp TCCEEBCCCSSGGGSHH-HHHHHHHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred CCCEEeccCCCchHHHH-HHHHHHCCChhhhcC--CHHHHHHHHHHHhc
Confidence 57888643321 111 112234476666654 88889888888764
No 472
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.39 E-value=3.6e+02 Score=28.13 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=32.4
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCH---H----HHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNG---L----QAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~dg---~----eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+|++-|.. ..+.+..+++..|+.+.....+ . +++..... ..||+||+|.
T Consensus 131 ~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~--~~~dvvIiDt 194 (306)
T 1vma_A 131 EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA--RNKDVVIIDT 194 (306)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH--TTCSEEEEEE
T ss_pred cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh--cCCCEEEEEC
Confidence 4568999987642 2233455666667777543322 1 23433333 5799999997
No 473
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=23.24 E-value=1.9e+02 Score=30.09 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CC----CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCH-------HHH
Q 004001 87 SLKVLLVENDDSTRHVVAALLRN--CG----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-------VAL 150 (780)
Q Consensus 87 ~lrVLIVDDD~~~r~~L~~lL~~--~G----yeV~-~A~dg~eALe~L~~~~~~pDLVLlDi-MP~-mdG-------leL 150 (780)
..+|..||-++...+..+..|.. .+ -+|. ...|+.+.+... ...||+||+|. .|. +++ .++
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~ 177 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---EERYDVVIIDLTDPVGEDNPARLLYTVEF 177 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---CCCEEEEEEECCCCBSTTCGGGGGSSHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc---CCCccEEEECCCCcccccCcchhccHHHH
Confidence 34899999999999988887754 12 1233 566776654432 35799999998 664 112 466
Q ss_pred HHHHHh
Q 004001 151 LSKIMS 156 (780)
Q Consensus 151 l~~IRs 156 (780)
++.+++
T Consensus 178 l~~~~~ 183 (314)
T 1uir_A 178 YRLVKA 183 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777753
No 474
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=23.22 E-value=1.7e+02 Score=31.35 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=52.8
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004001 88 LKVLLV-ENDDSTRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (780)
Q Consensus 88 lrVLIV-DDD~~~r~~L~~lL~~~GyeV~~A~--dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iP 164 (780)
++|+++ .+++..++.+..++... -.|..+. ...+.+.++.. -|+||++. + |+. ++ .....+|
T Consensus 264 ~~~v~~~g~~~~~~~~l~~~~~~~-~~v~~~~~lg~~~~~~l~~~----ad~vv~~S--G--g~~-~E-----A~a~G~P 328 (396)
T 3dzc_A 264 CQILYPVHLNPNVREPVNKLLKGV-SNIVLIEPQQYLPFVYLMDR----AHIILTDS--G--GIQ-EE-----APSLGKP 328 (396)
T ss_dssp EEEEEECCBCHHHHHHHHHHTTTC-TTEEEECCCCHHHHHHHHHH----CSEEEESC--S--GGG-TT-----GGGGTCC
T ss_pred ceEEEEeCCChHHHHHHHHHHcCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC--c--cHH-HH-----HHHcCCC
Confidence 455553 44555555555543221 1233332 22455555543 46666653 1 221 11 1234689
Q ss_pred EEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHHHH
Q 004001 165 VIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 207 (780)
Q Consensus 165 IIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~llr 207 (780)
+|++-..... .+..+.|+ .++..+ +.++|...|..++.
T Consensus 329 vV~~~~~~~~---~e~v~~G~-~~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 329 VLVMRETTER---PEAVAAGT-VKLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp EEECCSSCSC---HHHHHHTS-EEECTT-CHHHHHHHHHHHHH
T ss_pred EEEccCCCcc---hHHHHcCc-eEEcCC-CHHHHHHHHHHHHc
Confidence 9875333332 23456775 477654 89999999998874
No 475
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=23.19 E-value=2.2e+02 Score=29.48 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=24.3
Q ss_pred CHHHHHHHHHCCCCeEEeCCC--CHHHHHHHHHHH
Q 004001 173 SMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHV 205 (780)
Q Consensus 173 ~~e~~~~al~aGAddyL~KP~--~~eeL~~~L~~l 205 (780)
-.+.+.+|+++|..=|+-||+ +.++...++..+
T Consensus 79 H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a 113 (334)
T 3ohs_X 79 HKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEA 113 (334)
T ss_dssp HHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345677888999888888997 667776666554
No 476
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.10 E-value=1.6e+02 Score=29.31 Aligned_cols=67 Identities=6% Similarity=0.012 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCEEEE-EC---CHH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCC
Q 004001 100 RHVVAALLRNCGYEVTE-AT---NGL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLD 172 (780)
Q Consensus 100 r~~L~~lL~~~GyeV~~-A~---dg~---eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~ 172 (780)
...+...+++.||.+.. .. +.. +.++.+.. ..+|.||+-......-.+.++++++ ..+|||++....
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~~~ 96 (305)
T 3g1w_A 23 LKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA--KNPAGIAISAIDPVELTDTINKAVD----AGIPIVLFDSGA 96 (305)
T ss_dssp HHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH--HCCSEEEECCSSTTTTHHHHHHHHH----TTCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH--hCCCEEEEcCCCHHHHHHHHHHHHH----CCCcEEEECCCC
Confidence 34566667778999886 32 222 34555544 4689888754211122456677743 368999886543
No 477
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=23.07 E-value=72 Score=32.00 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEcc-CCCCC-------HHHHHHHHHhhc--CCCCccEEEE
Q 004001 102 VVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEV-MPCLS-------GVALLSKIMSHK--TRKNLPVIMM 168 (780)
Q Consensus 102 ~L~~lL~~~GyeV~~-A--~dg~eALe~L~~~~~~pDLVLlDi-MP~md-------GleLl~~IRs~~--~~~~iPIIvL 168 (780)
.+.+.++..|..+.. + .+..++++.+.. ..|.|++-. .|+.. +++.+++||+.. ....+||.+.
T Consensus 103 ~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~ 179 (230)
T 1tqj_A 103 RTLCQIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVD 179 (230)
T ss_dssp HHHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344445667877663 3 344555554433 467777655 66532 467777776532 1126788776
Q ss_pred ecCCCHHHHHHHHHCCCCeEEe
Q 004001 169 SSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 169 Sa~~~~e~~~~al~aGAddyL~ 190 (780)
-+-.. +.+..+.++||+.++.
T Consensus 180 GGI~~-~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 180 GGLKP-NNTWQVLEAGANAIVA 200 (230)
T ss_dssp SSCCT-TTTHHHHHHTCCEEEE
T ss_pred CCcCH-HHHHHHHHcCCCEEEE
Confidence 66544 6777889999999976
No 478
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=23.06 E-value=3.3e+02 Score=24.45 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=41.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCH----HHHHHHHHhc--CCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004001 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEA-TNG----LQAWKILEDL--TNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (780)
Q Consensus 88 lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A-~dg----~eALe~L~~~--~~~pDLVLlDiMP~mdGleLl~~IRs~~~~ 160 (780)
|||.||-| +.+...+ +-.|+....+ .+. +++.+.+++. ...+.|||+.- .+++.|++....
T Consensus 1 MKIaVIGD-~Dtv~GF----rLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte-------~ia~~i~~~~~i 68 (111)
T 2qai_A 1 MKIVVMGD-SDTVVGF----RLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITE-------RLAQRIGSLPEV 68 (111)
T ss_dssp CEEEEEEC-HHHHHHH----HHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEH-------HHHHHHCSCCCC
T ss_pred CEEEEEEC-HHHHHHH----HHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcH-------HHHhhccccccc
Confidence 47889988 4443332 2347776666 566 5655555432 24688888863 456777510111
Q ss_pred CCccEEEEecCC
Q 004001 161 KNLPVIMMSSLD 172 (780)
Q Consensus 161 ~~iPIIvLSa~~ 172 (780)
+.|+|+.-...
T Consensus 69 -~~P~IleIPs~ 79 (111)
T 2qai_A 69 -KFPIILQIPDK 79 (111)
T ss_dssp -SSSEEEEECTT
T ss_pred -CCCEEEEECCC
Confidence 27877765543
No 479
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=23.04 E-value=1.7e+02 Score=29.70 Aligned_cols=85 Identities=6% Similarity=0.008 Sum_probs=50.7
Q ss_pred cEEEEEeC-CHH---HHHHHHHHHHhCCCEEE---E----ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLVEN-DDS---TRHVVAALLRNCGYEVT---E----ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIVDD-D~~---~r~~L~~lL~~~GyeV~---~----A~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.||-+ +.. ..+.+...|++.|+.+. . ..+....+..+.. ..+|+||+.. .+.+...+++.+++
T Consensus 139 ~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~-~~~~a~~~~~~~~~ 215 (356)
T 3ipc_A 139 AKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKE--AGVSIIYWGG-LHTEAGLIIRQAAD 215 (356)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHH--TTCCEEEEES-CHHHHHHHHHHHHH
T ss_pred CEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEcc-CchHHHHHHHHHHH
Confidence 35666644 333 23456667777787653 1 2356677777776 5789998643 22335567888876
Q ss_pred hcCCCCccEEEEecCCCHHHH
Q 004001 157 HKTRKNLPVIMMSSLDSMGLV 177 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~~~e~~ 177 (780)
.. ..+|+|......+....
T Consensus 216 ~g--~~~~~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 216 QG--LKAKLVSGDGIVSNELA 234 (356)
T ss_dssp HT--CCCEEEECGGGCSHHHH
T ss_pred CC--CCCcEEEeccccCHHHH
Confidence 54 35777655555555443
No 480
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=23.01 E-value=4.3e+02 Score=27.11 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=32.7
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEcc
Q 004001 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NGL----QAWKILEDLTNHIDLVLTEV 141 (780)
Q Consensus 86 ~~lrVLIVDDD~~---~r~~L~~lL~~~GyeV~~A~---dg~----eALe~L~~~~~~pDLVLlDi 141 (780)
.+.+|+|+|-|.. ....+..+.+..|+.+..+. +.. .+++.+.. ..||+||+|.
T Consensus 125 ~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~--~~~D~viiDt 188 (295)
T 1ls1_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (295)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--HTCCEEEEEC
T ss_pred cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 4568999998743 22234444555677766542 332 34555432 4699999997
No 481
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=22.99 E-value=1.9e+02 Score=30.74 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCHHHHHHHHHHH
Q 004001 149 ALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 205 (780)
Q Consensus 149 eLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~eeL~~~L~~l 205 (780)
+.++++|+. .+..||.+-.. +.+.+.+++++|+|-.+..-+++++|..++..+
T Consensus 196 ~Av~~ar~~--~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKN--LKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHH--SSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 566777654 35678887655 357888999999999999999999999988764
No 482
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=22.94 E-value=1.6e+02 Score=30.30 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=20.9
Q ss_pred CccEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEE
Q 004001 86 RSLKVLLVENDD--------STRHVVAALLRNCGYEVTEA 117 (780)
Q Consensus 86 ~~lrVLIVDDD~--------~~r~~L~~lL~~~GyeV~~A 117 (780)
.+||||+|-... .....+...|.+.||+|..+
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899998642 24455667777889988743
No 483
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=22.88 E-value=2.1e+02 Score=32.05 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCceEEEEcc-CCCCCH-HHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 120 GLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 120 g~eALe~L~~~~~~pDLVLlDi-MP~mdG-leLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
..+.++.+.+ ..+|+|.+|. ...... ++++++|++. .+++|||+-.- ...+.+..+.++||+.+..
T Consensus 256 ~~~~a~~~~~--aG~d~v~i~~~~G~~~~~~~~i~~i~~~--~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQ--AGVDVIVLDSSQGNSVYQIAMVHYIKQK--YPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHH--TTCSEEEECCSCCCSHHHHHHHHHHHHH--CTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHH--cCCCEEEeeccCCcchhHHHHHHHHHHh--CCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 3445555554 5689999988 533333 5889999765 35788876332 4567788999999987765
No 484
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=22.87 E-value=1.9e+02 Score=30.07 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=22.2
Q ss_pred ccEEEEEeCC---H------HHHHHHHHHHHhCCCEEEEEC
Q 004001 87 SLKVLLVEND---D------STRHVVAALLRNCGYEVTEAT 118 (780)
Q Consensus 87 ~lrVLIVDDD---~------~~r~~L~~lL~~~GyeV~~A~ 118 (780)
.||||+|-.. . .....|...|.+.|++|..+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789998755 1 134567777888899888543
No 485
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=22.87 E-value=45 Score=33.60 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=44.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCC
Q 004001 86 RSLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRK 161 (780)
Q Consensus 86 ~~lrVLIVDDD~~~r~~L~~lL~~~Gye--V~~A~dg~eALe~L~~~~~~pDLVLlDi--MP~mdGleLl~~IRs~~~~~ 161 (780)
.+++|||+--....|.....++...|+. ...+.+..++++.+. ..+|+|++|= .-..+-+++++.|.. .
T Consensus 55 ~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~---~~~dvViIDEaQF~~~~~V~~l~~l~~----~ 127 (214)
T 2j9r_A 55 AKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT---EEMDVIAIDEVQFFDGDIVEVVQVLAN----R 127 (214)
T ss_dssp TTCCEEEEECC-----------------CCEEECSSGGGGGGGCC---SSCCEEEECCGGGSCTTHHHHHHHHHH----T
T ss_pred CCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh---cCCCEEEEECcccCCHHHHHHHHHHhh----C
Confidence 5678999864433443333444444543 334555555555443 3589999995 333455677777742 2
Q ss_pred CccEEEEecCCCHHHHHHHHHCCCCeEEeCCCCH
Q 004001 162 NLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRK 195 (780)
Q Consensus 162 ~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~~ 195 (780)
.++|| +++.. .||-.+||..
T Consensus 128 ~~~Vi-~~Gl~-------------~DF~~~~F~~ 147 (214)
T 2j9r_A 128 GYRVI-VAGLD-------------QDFRGLPFGQ 147 (214)
T ss_dssp TCEEE-EEECS-------------BCTTSCBCTT
T ss_pred CCEEE-EEecc-------------cccccCcccc
Confidence 56665 45543 2477788864
No 486
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=22.85 E-value=18 Score=39.57 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.6
Q ss_pred HHHHHhhhcc
Q 004001 729 VTKYRQKKTE 738 (780)
Q Consensus 729 ~~~~~~k~~~ 738 (780)
|.+|=+++-+
T Consensus 161 IN~WV~~~T~ 170 (395)
T 3b9f_I 161 INDYVAKQTK 170 (395)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 4555444433
No 487
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=22.84 E-value=1.3e+02 Score=31.01 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=47.1
Q ss_pred cEEEEE-eCCHH---HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004001 88 LKVLLV-ENDDS---TRHVVAALLRNCGYEVT---EA----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (780)
Q Consensus 88 lrVLIV-DDD~~---~r~~L~~lL~~~GyeV~---~A----~dg~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs 156 (780)
-+|.|| +++.. ....++..|++.|.+|. .+ .+....+..+.. ..+|+||+.. .+.+...+++.+++
T Consensus 142 ~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~-~~~~a~~~~~~~~~ 218 (364)
T 3lop_A 142 TRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA--ADVQAIFLGA-TAEPAAQFVRQYRA 218 (364)
T ss_dssp CCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH--SCCSEEEEES-CHHHHHHHHHHHHH
T ss_pred ceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh--CCCCEEEEec-CcHHHHHHHHHHHH
Confidence 356555 44443 33456677777787543 22 355677777776 5789988753 22346677888865
Q ss_pred hcCCCCccEEEEecCC
Q 004001 157 HKTRKNLPVIMMSSLD 172 (780)
Q Consensus 157 ~~~~~~iPIIvLSa~~ 172 (780)
.. ..+|||......
T Consensus 219 ~g--~~~~~i~~~~~~ 232 (364)
T 3lop_A 219 RG--GEAQLLGLSSID 232 (364)
T ss_dssp TT--CCCEEEECTTSC
T ss_pred cC--CCCeEEEeccCC
Confidence 54 456765443333
No 488
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.75 E-value=2.4e+02 Score=27.92 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCC-EEEEECC---HH---HHHHHHHhcCCCceEEEEccCCCCCH-HHHHHHHHhhcCCCCccEEEEec
Q 004001 99 TRHVVAALLRNCGY-EVTEATN---GL---QAWKILEDLTNHIDLVLTEVMPCLSG-VALLSKIMSHKTRKNLPVIMMSS 170 (780)
Q Consensus 99 ~r~~L~~lL~~~Gy-eV~~A~d---g~---eALe~L~~~~~~pDLVLlDiMP~mdG-leLl~~IRs~~~~~~iPIIvLSa 170 (780)
+...+...+++.|| ++..+.. .. +.++.+.. ..+|.||+-.. ..+. .++++++++ ..+|||++-.
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~-~~~~~~~~~~~~~~----~~iPvV~~~~ 92 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA--KGVKALAINLV-DPAAAGTVIEKARG----QNVPVVFFNK 92 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS-SGGGHHHHHHHHHT----TTCCEEEESS
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCC-CcchhHHHHHHHHH----CCCcEEEecC
Confidence 34556677778898 8876542 32 34555544 57898887431 1122 356666643 4689998865
Q ss_pred CC
Q 004001 171 LD 172 (780)
Q Consensus 171 ~~ 172 (780)
..
T Consensus 93 ~~ 94 (309)
T 2fvy_A 93 EP 94 (309)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 489
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=22.74 E-value=95 Score=34.05 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=60.2
Q ss_pred EeCCHHHHHHHHHHHHhCCC--EE--E-EE-------------C----CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHH
Q 004001 93 VENDDSTRHVVAALLRNCGY--EV--T-EA-------------T----NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVA 149 (780)
Q Consensus 93 VDDD~~~r~~L~~lL~~~Gy--eV--~-~A-------------~----dg~eALe~L~~~~~~pDLVLlDi-MP~mdGle 149 (780)
++++....+.+++.++..|+ ++ . -+ . +..+|++++.+.-..++|.++.- ++..| ++
T Consensus 220 ~~~d~~~v~~vreav~~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d-~~ 298 (427)
T 2pa6_A 220 LKTSREALDLLTESVKKAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPIVSIEDPFHEED-FE 298 (427)
T ss_dssp CCSHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEECCSCTTC-HH
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhh-HH
Confidence 34556666667777754454 22 2 12 1 56788877542113478889888 76544 66
Q ss_pred HHHHHHhhcCCCCccEEEEecCC---CHHHHHHHHHCCCCe-EEeCCCCHHHHHHH
Q 004001 150 LLSKIMSHKTRKNLPVIMMSSLD---SMGLVFKCLSKGAVD-FLVKPIRKNELKNL 201 (780)
Q Consensus 150 Ll~~IRs~~~~~~iPIIvLSa~~---~~e~~~~al~aGAdd-yL~KP~~~eeL~~~ 201 (780)
-+++|++. ..+|| ++... +.....++++.|+.+ +..||...--|..+
T Consensus 299 ~~~~l~~~---~~ipI--a~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea 349 (427)
T 2pa6_A 299 GFAMITKE---LDIQI--VGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEA 349 (427)
T ss_dssp HHHHHHHH---SSSEE--EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHH
T ss_pred HHHHHHhh---CCCeE--EeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHH
Confidence 66777654 23565 34432 367788888888655 55677544334433
No 490
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.72 E-value=2.6e+02 Score=28.80 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEe
Q 004001 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 99 ~r~~L~~lL~~~GyeV~~A~d---g~---eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLS 169 (780)
+...+...+++.||.+..+.. .. +.++.+.. ..+|-||+-... .+ .++++.++. ..+|||++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~-~~-~~~~~~l~~----~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR--RRPEAMVLSYDG-HT-EQTIRLLQR----ASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEECSC-CC-HHHHHHHHH----CCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCC-CC-HHHHHHHHh----CCCCEEEEC
Confidence 345566677788999886542 22 34555555 578877763311 12 356666643 358999884
No 491
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=22.71 E-value=1.7e+02 Score=32.06 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 121 LQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDi-MP~md-GleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.+.++.+.+ ..+|+|++|. ...-. -.+++++|++. . .+|||+- .-...+.+..+.++|||.++.
T Consensus 146 ~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~--~-~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSK--M-NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTT--C-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhc--C-CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 455555554 4689999997 43222 26788888643 2 5777752 224577888999999998887
No 492
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.59 E-value=4.5e+02 Score=25.81 Aligned_cols=75 Identities=16% Similarity=0.321 Sum_probs=0.0
Q ss_pred CccEEEEEeCC------HHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHH
Q 004001 86 RSLKVLLVEND------DSTRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (780)
Q Consensus 86 ~~lrVLIVDDD------~~~r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDi-MP~mdGleLl~ 152 (780)
+..+|.||-.+ ..+...+...+++.||.+..+... .+.++.+.. ..+|.||+-. .+... ++++
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~~~--~~~~ 94 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ--RQVDAIIVSTSLPPEH--PFYQ 94 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSCTTC--HHHH
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCCCcH--HHHH
Q ss_pred HHHhhcCCCCccEEEE
Q 004001 153 KIMSHKTRKNLPVIMM 168 (780)
Q Consensus 153 ~IRs~~~~~~iPIIvL 168 (780)
.+ ....+|||++
T Consensus 95 ~~----~~~~iPvV~~ 106 (293)
T 2iks_A 95 RW----ANDPFPIVAL 106 (293)
T ss_dssp TT----TTSSSCEEEE
T ss_pred HH----HhCCCCEEEE
No 493
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=22.59 E-value=2e+02 Score=26.69 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred cccCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc
Q 004001 82 FLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (780)
Q Consensus 82 ~~~~~~lrVLIVDDD~~~r~~L~~lL~~~GyeV~~A~dg~eALe~L~~~~~~pDLVLlD 140 (780)
...+.+.+|.++....... +|...+..+..+.+..+++++|.. ...|+++.+
T Consensus 111 ~~dL~g~~v~~~~g~~~~~-----~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~ 162 (233)
T 1ii5_A 111 VGDLKNKEVAVVRDTTAVD-----WANFYQADVRETNNLTAAITLLQK--KQVEAVMFD 162 (233)
T ss_dssp GGGGTTCEEEEETTSHHHH-----HHHHTTCEEEEESSHHHHHHHHHT--TSCSEEEEE
T ss_pred HHHhCCCeEEEECCccHHH-----HHHHcCCCeEEcCCHHHHHHHHHc--CCccEEEeC
No 494
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.58 E-value=1.9e+02 Score=29.14 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEE
Q 004001 97 DSTRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMM 168 (780)
Q Consensus 97 ~~~r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvL 168 (780)
..+...+...+++.||.+..+... .+.++.+.. ..+|.||+-......-.+.+++++... +|||++
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiIi~~~~~~~~~~~~~~~~~~g----iPvV~~ 90 (330)
T 3uug_A 19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT--KGVKVLVIASIDGTTLSDVLKQAGEQG----IKVIAY 90 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HTCSEEEECCSSGGGGHHHHHHHHHTT----CEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH--cCCCEEEEEcCCchhHHHHHHHHHHCC----CCEEEE
No 495
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=22.56 E-value=1.4e+02 Score=30.41 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHHh
Q 004001 89 KVLLVENDDSTRHVVAALLRN------CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMS 156 (780)
Q Consensus 89 rVLIVDDD~~~r~~L~~lL~~------~GyeV~~A~dg~eALe~L~~~~~~pDLVLlDi-MP~mdG-----leLl~~IRs 156 (780)
+|.+||-++.+.+..+..|.. ..---+...|+.+.+.... ..||+||+|. .|.... .++++.+++
T Consensus 101 ~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~---~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~ 177 (275)
T 1iy9_A 101 KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE---NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCC---SCEEEEEESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCC---CCeeEEEECCCCCCCcchhhhHHHHHHHHHH
No 496
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=22.53 E-value=1.4e+02 Score=30.58 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEe
Q 004001 121 LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLV 190 (780)
Q Consensus 121 ~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~ 190 (780)
.++++.+.+ ...|+|++-.--+...-.+.+.++..+. ..+|||++.... ..+..|||.||.
T Consensus 26 ~~~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~ 86 (235)
T 3w01_A 26 DDDLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFV 86 (235)
T ss_dssp HHHHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEE
No 497
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=22.50 E-value=18 Score=35.99 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 004001 609 HYDNCHHLVHNMQQ 622 (780)
Q Consensus 609 ~~~~~~~~~~~~~~ 622 (780)
||||||||+|.+.|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (221)
T 2c0d_A 3 HHHHHHHHHHSSGH 16 (221)
T ss_dssp --------------
T ss_pred cccccccccccccc
No 498
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.43 E-value=4.1e+02 Score=26.06 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred CccEEEEEeCC------HHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004001 86 RSLKVLLVEND------DSTRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (780)
Q Consensus 86 ~~lrVLIVDDD------~~~r~~L~~lL~~~GyeV~~A~dg------~eALe~L~~~~~~pDLVLlDiMP~mdGleLl~~ 153 (780)
+..+|-||-.+ ..+...+...+++.||.+..+... .+.++.+.. ..+|.||+ ++....-+.++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~--~~~~~~~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG--KMVDGVIT--MDALSELPELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT--TCCSEEEE--CCCGGGHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEE--eCCCCChHHHHH
Q ss_pred HHhhcCCCCccEEEE
Q 004001 154 IMSHKTRKNLPVIMM 168 (780)
Q Consensus 154 IRs~~~~~~iPIIvL 168 (780)
++ .. +|||++
T Consensus 83 l~-~~----iPvV~~ 92 (285)
T 3c3k_A 83 II-GA----FPWVQC 92 (285)
T ss_dssp HH-TT----SSEEEE
T ss_pred Hh-cC----CCEEEE
No 499
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=22.40 E-value=1.2e+02 Score=28.81 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred ccCCccEEEEEeCCHHH----------HHHHHHHHHhCCCEEEEE--------------------CCHHHHHHHHHhc--
Q 004001 83 LHLRSLKVLLVENDDST----------RHVVAALLRNCGYEVTEA--------------------TNGLQAWKILEDL-- 130 (780)
Q Consensus 83 ~~~~~lrVLIVDDD~~~----------r~~L~~lL~~~GyeV~~A--------------------~dg~eALe~L~~~-- 130 (780)
+..+.++|+++-|.-.. ...|...|...++.+..+ ....+.+..+...
T Consensus 1 ~a~~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~ 80 (215)
T 2vpt_A 1 MASKTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLN 80 (215)
T ss_dssp ---CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhh
Q ss_pred CCCceEEEEcc-CCCC---------CHHHHHHHHHhhcCCCCccEEEEe
Q 004001 131 TNHIDLVLTEV-MPCL---------SGVALLSKIMSHKTRKNLPVIMMS 169 (780)
Q Consensus 131 ~~~pDLVLlDi-MP~m---------dGleLl~~IRs~~~~~~iPIIvLS 169 (780)
...||+||+-+ .-+. +=-.+++.|++.. +.++||+++
T Consensus 81 ~~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~--p~~~ii~~~ 127 (215)
T 2vpt_A 81 THNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVK--PNVTLFVAD 127 (215)
T ss_dssp HHCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHC--TTCEEEEEC
T ss_pred ccCCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhC--CCCEEEEEe
No 500
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.39 E-value=1.1e+02 Score=31.57 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHH----HhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCccEEEEecCCCHHHHHHHHHCCCCeEEeCCCC
Q 004001 120 GLQAWKIL----EDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIR 194 (780)
Q Consensus 120 g~eALe~L----~~~~~~pDLVLlDi-MP~mdGleLl~~IRs~~~~~~iPIIvLSa~~~~e~~~~al~aGAddyL~KP~~ 194 (780)
.+++...+ ++ ..||+||+=. -|..-|-.-.+++-+. .++|.|+++...... ..++++..-.+||.-+.+
T Consensus 49 ~~~~~~~~~~~~~~--~~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 49 VEAAVEMALDIAED--FEPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp HHHHHHHHHHHHHH--HCCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTS
T ss_pred HHHHHHHhhhhhhh--cCCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecC
Q ss_pred H
Q 004001 195 K 195 (780)
Q Consensus 195 ~ 195 (780)
+
T Consensus 123 p 123 (283)
T 1qv9_A 123 A 123 (283)
T ss_dssp C
T ss_pred c
Done!