Query 004002
Match_columns 780
No_of_seqs 553 out of 3234
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 4.6E-59 9.9E-64 511.9 20.2 454 130-767 2-460 (549)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.6E-32 7.7E-37 298.8 24.4 240 115-354 4-351 (352)
3 PF04059 RRM_2: RNA recognitio 100.0 3.1E-33 6.7E-38 251.0 7.6 72 694-765 1-72 (97)
4 KOG0117 Heterogeneous nuclear 100.0 1E-29 2.2E-34 273.2 29.3 243 107-356 76-335 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-30 2.7E-35 304.6 23.4 265 116-380 2-311 (562)
6 KOG0145 RNA-binding protein EL 100.0 7.9E-31 1.7E-35 264.7 14.2 214 189-428 38-269 (360)
7 TIGR01628 PABP-1234 polyadenyl 100.0 2E-29 4.4E-34 294.4 27.9 246 115-361 89-373 (562)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 5.5E-29 1.2E-33 286.3 21.9 233 113-354 57-309 (578)
9 KOG0148 Apoptosis-promoting RN 100.0 8.2E-29 1.8E-33 252.0 19.9 216 114-355 6-241 (321)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.6E-28 2.1E-32 275.3 21.1 233 115-351 3-350 (481)
11 TIGR01659 sex-lethal sex-letha 100.0 1.1E-27 2.4E-32 262.8 19.9 162 189-354 104-277 (346)
12 KOG0145 RNA-binding protein EL 100.0 2.5E-27 5.3E-32 239.5 17.4 245 91-352 38-358 (360)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.1E-26 4.5E-31 253.2 19.5 159 191-353 2-172 (352)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.8E-26 1.5E-30 260.1 23.4 162 191-352 274-480 (481)
15 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-25 2.8E-30 255.8 24.3 239 114-352 89-448 (457)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.6E-25 7.8E-30 255.3 23.0 238 114-351 175-501 (509)
17 TIGR01645 half-pint poly-U bin 99.9 1.9E-25 4E-30 257.6 18.8 163 191-353 106-285 (612)
18 KOG0127 Nucleolar protein fibr 99.9 9.1E-24 2E-28 231.6 18.9 243 115-357 6-383 (678)
19 KOG0144 RNA-binding protein CU 99.9 1.4E-24 3.1E-29 232.6 12.2 241 114-354 34-506 (510)
20 KOG0144 RNA-binding protein CU 99.9 4.9E-24 1.1E-28 228.6 15.2 163 191-356 33-210 (510)
21 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-23 3.6E-28 238.4 18.1 162 189-351 86-265 (457)
22 TIGR01645 half-pint poly-U bin 99.9 6.4E-22 1.4E-26 228.5 23.6 153 113-265 106-282 (612)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-22 3.2E-27 233.4 17.8 178 191-378 57-257 (578)
24 KOG0110 RNA-binding protein (R 99.9 5.3E-23 1.1E-27 232.4 12.0 323 24-354 249-695 (725)
25 KOG0123 Polyadenylate-binding 99.9 6.7E-22 1.5E-26 218.5 19.7 235 116-361 3-255 (369)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.8E-22 8.3E-27 230.2 18.4 163 188-352 171-375 (509)
27 KOG0117 Heterogeneous nuclear 99.9 1.8E-21 3.9E-26 210.0 15.1 180 191-380 82-285 (506)
28 KOG0131 Splicing factor 3b, su 99.9 1.4E-21 3E-26 189.9 11.2 161 191-354 8-179 (203)
29 KOG0109 RNA-binding protein LA 99.9 1.3E-21 2.9E-26 201.4 10.1 148 193-352 3-150 (346)
30 KOG0123 Polyadenylate-binding 99.9 3.1E-21 6.8E-26 213.2 13.4 240 117-359 79-356 (369)
31 KOG0127 Nucleolar protein fibr 99.8 6.2E-20 1.3E-24 201.7 15.5 161 193-353 6-197 (678)
32 KOG0146 RNA-binding protein ET 99.8 1.5E-19 3.3E-24 184.0 6.4 166 191-356 18-369 (371)
33 KOG0124 Polypyrimidine tract-b 99.8 9.1E-19 2E-23 184.4 10.1 157 193-351 114-289 (544)
34 TIGR01659 sex-lethal sex-letha 99.8 5.7E-18 1.2E-22 186.3 14.7 154 114-267 107-275 (346)
35 KOG4206 Spliceosomal protein s 99.7 4.7E-17 1E-21 164.0 15.5 161 190-350 7-220 (221)
36 KOG0148 Apoptosis-promoting RN 99.7 1.7E-17 3.8E-22 169.8 11.0 135 190-354 4-144 (321)
37 KOG0147 Transcriptional coacti 99.7 7.4E-17 1.6E-21 178.9 14.6 236 115-350 180-526 (549)
38 KOG0124 Polypyrimidine tract-b 99.7 2.4E-16 5.3E-21 166.2 14.1 238 112-349 111-532 (544)
39 KOG4205 RNA-binding protein mu 99.7 1.6E-16 3.5E-21 170.8 9.6 162 191-354 5-178 (311)
40 KOG0147 Transcriptional coacti 99.6 3.9E-16 8.5E-21 173.2 5.7 163 188-351 175-357 (549)
41 KOG1190 Polypyrimidine tract-b 99.6 4.4E-15 9.5E-20 159.3 11.9 240 114-353 28-374 (492)
42 KOG0105 Alternative splicing f 99.6 9.3E-15 2E-19 142.5 12.1 149 190-340 4-176 (241)
43 KOG0110 RNA-binding protein (R 99.6 2E-14 4.4E-19 163.4 14.3 191 189-381 382-640 (725)
44 KOG4212 RNA-binding protein hn 99.6 2.4E-12 5.2E-17 139.1 28.7 158 192-349 44-291 (608)
45 KOG0109 RNA-binding protein LA 99.5 2.4E-14 5.1E-19 148.2 7.7 145 114-268 2-151 (346)
46 KOG1190 Polypyrimidine tract-b 99.5 9.7E-13 2.1E-17 141.5 18.2 161 192-352 297-491 (492)
47 KOG0106 Alternative splicing f 99.5 3E-14 6.5E-19 145.1 6.2 149 193-347 2-166 (216)
48 PLN03134 glycine-rich RNA-bind 99.5 2.1E-13 4.5E-18 132.6 9.6 80 190-269 32-116 (144)
49 PLN03134 glycine-rich RNA-bind 99.4 3.4E-13 7.4E-18 131.0 9.9 78 276-353 33-115 (144)
50 KOG1457 RNA binding protein (c 99.4 7.1E-13 1.5E-17 132.9 11.5 150 191-340 33-274 (284)
51 KOG1548 Transcription elongati 99.4 2.9E-12 6.4E-17 135.7 14.9 164 189-352 131-352 (382)
52 KOG1456 Heterogeneous nuclear 99.4 8E-12 1.7E-16 133.1 18.0 233 114-352 31-363 (494)
53 KOG4212 RNA-binding protein hn 99.3 3.7E-11 8.1E-16 130.1 18.5 70 278-349 537-608 (608)
54 KOG4211 Splicing factor hnRNP- 99.3 1.2E-11 2.7E-16 136.3 13.8 158 192-352 10-182 (510)
55 PF00076 RRM_1: RNA recognitio 99.3 4.4E-12 9.6E-17 106.0 7.8 66 280-345 1-70 (70)
56 PF00076 RRM_1: RNA recognitio 99.3 4.5E-12 9.8E-17 105.9 7.3 66 195-260 1-70 (70)
57 KOG0131 Splicing factor 3b, su 99.3 4E-12 8.6E-17 124.4 7.2 157 115-271 10-181 (203)
58 COG0724 RNA-binding proteins ( 99.3 3.2E-11 7E-16 124.3 12.0 118 192-309 115-257 (306)
59 KOG0107 Alternative splicing f 99.2 1E-11 2.2E-16 120.8 6.8 76 277-352 10-85 (195)
60 KOG0120 Splicing factor U2AF, 99.2 7.9E-11 1.7E-15 133.0 14.6 163 190-352 287-492 (500)
61 KOG4205 RNA-binding protein mu 99.2 3.2E-11 6.9E-16 130.2 10.9 191 114-305 6-215 (311)
62 KOG0125 Ataxin 2-binding prote 99.2 2.2E-11 4.7E-16 128.3 8.9 99 250-352 73-174 (376)
63 KOG4211 Splicing factor hnRNP- 99.2 3.2E-10 6.9E-15 125.3 17.5 232 115-348 11-354 (510)
64 KOG0122 Translation initiation 99.2 7.6E-11 1.6E-15 120.2 9.4 78 190-267 187-269 (270)
65 KOG0107 Alternative splicing f 99.2 3.5E-11 7.5E-16 117.2 5.8 77 191-267 9-85 (195)
66 KOG0114 Predicted RNA-binding 99.1 9.6E-11 2.1E-15 105.0 7.8 79 190-268 16-96 (124)
67 KOG0122 Translation initiation 99.1 9E-11 1.9E-15 119.6 8.4 77 276-352 188-269 (270)
68 KOG0149 Predicted RNA-binding 99.1 6.9E-11 1.5E-15 120.1 7.1 76 189-265 9-89 (247)
69 PLN03120 nucleic acid binding 99.1 1.3E-10 2.9E-15 121.5 9.5 74 277-351 4-79 (260)
70 KOG0114 Predicted RNA-binding 99.1 4.8E-10 1E-14 100.6 11.4 81 277-357 18-100 (124)
71 KOG0121 Nuclear cap-binding pr 99.1 7.2E-11 1.6E-15 109.5 6.2 75 190-264 34-113 (153)
72 PLN03120 nucleic acid binding 99.1 1.8E-10 3.8E-15 120.6 9.2 76 192-268 4-81 (260)
73 PF14259 RRM_6: RNA recognitio 99.1 2.1E-10 4.6E-15 96.7 7.9 66 280-345 1-70 (70)
74 PF14259 RRM_6: RNA recognitio 99.1 1.7E-10 3.6E-15 97.3 7.2 66 195-260 1-70 (70)
75 KOG0125 Ataxin 2-binding prote 99.1 1.6E-10 3.4E-15 122.0 8.0 79 189-267 93-174 (376)
76 smart00362 RRM_2 RNA recogniti 99.1 3.6E-10 7.8E-15 93.2 8.4 69 279-347 1-72 (72)
77 KOG1365 RNA-binding protein Fu 99.1 4.2E-10 9.1E-15 120.5 10.9 164 192-356 161-366 (508)
78 PLN03213 repressor of silencin 99.1 2.7E-10 5.8E-15 124.9 9.1 86 275-367 8-98 (759)
79 KOG0121 Nuclear cap-binding pr 99.0 2.4E-10 5.1E-15 106.2 5.9 76 276-351 35-115 (153)
80 PF13893 RRM_5: RNA recognitio 99.0 7.2E-10 1.6E-14 89.9 7.9 56 294-349 1-56 (56)
81 KOG4660 Protein Mei2, essentia 99.0 2.8E-10 6.1E-15 127.5 7.0 162 189-353 72-251 (549)
82 smart00362 RRM_2 RNA recogniti 99.0 1.1E-09 2.4E-14 90.1 7.6 69 194-262 1-72 (72)
83 smart00360 RRM RNA recognition 99.0 1.6E-09 3.4E-14 88.9 8.0 66 282-347 1-71 (71)
84 KOG0105 Alternative splicing f 99.0 6.3E-10 1.4E-14 109.1 6.2 78 276-353 5-84 (241)
85 PLN03213 repressor of silencin 99.0 9.3E-10 2E-14 120.8 8.1 75 191-267 9-88 (759)
86 KOG0113 U1 small nuclear ribon 99.0 1.1E-09 2.4E-14 114.4 8.2 78 188-265 97-179 (335)
87 KOG4207 Predicted splicing fac 99.0 8E-10 1.7E-14 110.2 6.6 75 191-265 12-91 (256)
88 KOG0149 Predicted RNA-binding 99.0 7E-10 1.5E-14 112.9 6.1 79 274-353 9-92 (247)
89 cd00590 RRM RRM (RNA recogniti 98.9 3.7E-09 8.1E-14 87.5 8.7 70 279-348 1-74 (74)
90 PLN03121 nucleic acid binding 98.9 2.5E-09 5.4E-14 110.5 9.1 74 277-351 5-80 (243)
91 KOG0113 U1 small nuclear ribon 98.9 3.1E-09 6.7E-14 111.2 9.5 91 263-353 87-182 (335)
92 KOG1456 Heterogeneous nuclear 98.9 1.5E-08 3.3E-13 108.4 14.7 168 185-353 24-200 (494)
93 KOG0111 Cyclophilin-type pepti 98.9 6.2E-10 1.3E-14 111.6 3.9 79 191-269 9-92 (298)
94 KOG4207 Predicted splicing fac 98.9 9.9E-10 2.1E-14 109.5 5.3 76 277-352 13-93 (256)
95 smart00360 RRM RNA recognition 98.9 2.3E-09 5E-14 87.8 6.7 66 197-262 1-71 (71)
96 PLN03121 nucleic acid binding 98.9 3.1E-09 6.7E-14 109.8 8.5 72 192-264 5-78 (243)
97 KOG0146 RNA-binding protein ET 98.9 3.9E-09 8.4E-14 108.6 8.0 97 256-356 2-105 (371)
98 KOG0111 Cyclophilin-type pepti 98.9 1.2E-09 2.6E-14 109.6 4.2 80 276-355 9-93 (298)
99 cd00590 RRM RRM (RNA recogniti 98.9 6.9E-09 1.5E-13 85.9 7.7 70 194-263 1-74 (74)
100 COG0724 RNA-binding proteins ( 98.8 7.3E-09 1.6E-13 106.7 8.9 75 277-351 115-194 (306)
101 PF13893 RRM_5: RNA recognitio 98.8 4.4E-09 9.6E-14 85.2 5.4 56 209-264 1-56 (56)
102 KOG0130 RNA-binding protein RB 98.8 4.5E-09 9.8E-14 98.5 5.9 81 273-353 68-153 (170)
103 KOG0129 Predicted RNA-binding 98.8 2.2E-08 4.7E-13 111.8 12.1 144 190-333 257-432 (520)
104 KOG0108 mRNA cleavage and poly 98.8 5.5E-09 1.2E-13 117.5 6.7 77 193-269 19-100 (435)
105 KOG0108 mRNA cleavage and poly 98.8 1.2E-08 2.7E-13 114.7 8.7 79 278-356 19-102 (435)
106 KOG0126 Predicted RNA-binding 98.8 8.5E-10 1.9E-14 108.1 -1.2 75 191-265 34-113 (219)
107 KOG0130 RNA-binding protein RB 98.8 8.9E-09 1.9E-13 96.5 5.5 81 187-267 67-152 (170)
108 KOG0126 Predicted RNA-binding 98.8 1.3E-09 2.9E-14 106.7 -0.1 75 275-349 33-112 (219)
109 smart00361 RRM_1 RNA recogniti 98.8 2.2E-08 4.7E-13 85.3 7.2 57 291-347 2-70 (70)
110 KOG0112 Large RNA-binding prot 98.7 1.2E-08 2.7E-13 119.3 4.4 157 190-353 370-532 (975)
111 KOG0132 RNA polymerase II C-te 98.6 3.8E-08 8.2E-13 113.6 7.2 77 192-269 421-497 (894)
112 KOG0132 RNA polymerase II C-te 98.6 5.7E-08 1.2E-12 112.2 8.1 80 276-356 420-499 (894)
113 KOG0120 Splicing factor U2AF, 98.6 6.2E-08 1.3E-12 109.9 7.9 165 190-356 173-373 (500)
114 KOG4206 Spliceosomal protein s 98.6 7.3E-08 1.6E-12 98.1 7.0 77 278-354 10-92 (221)
115 smart00361 RRM_1 RNA recogniti 98.6 1.1E-07 2.3E-12 81.0 5.9 56 206-261 2-69 (70)
116 KOG0153 Predicted RNA-binding 98.5 2.3E-07 5E-12 99.1 7.3 83 184-267 220-303 (377)
117 KOG4210 Nuclear localization s 98.4 2.6E-07 5.6E-12 99.6 6.2 163 191-354 87-266 (285)
118 KOG0226 RNA-binding proteins [ 98.4 1.8E-07 3.8E-12 96.4 4.2 159 194-352 98-270 (290)
119 KOG0153 Predicted RNA-binding 98.4 4.3E-07 9.3E-12 97.2 7.2 77 274-351 225-302 (377)
120 KOG4454 RNA binding protein (R 98.4 9.6E-08 2.1E-12 96.3 2.0 131 191-339 8-150 (267)
121 KOG0128 RNA-binding protein SA 98.3 8.9E-08 1.9E-12 112.0 -1.2 138 193-351 668-814 (881)
122 KOG0415 Predicted peptidyl pro 98.3 8E-07 1.7E-11 95.0 4.7 79 190-268 237-320 (479)
123 KOG0415 Predicted peptidyl pro 98.2 1.1E-06 2.5E-11 93.8 5.5 78 276-353 238-320 (479)
124 KOG4208 Nucleolar RNA-binding 98.2 2.6E-06 5.6E-11 85.7 7.7 79 274-352 46-130 (214)
125 KOG0106 Alternative splicing f 98.2 1.5E-06 3.3E-11 89.2 6.1 148 114-264 1-168 (216)
126 KOG4661 Hsp27-ERE-TATA-binding 98.2 1.6E-06 3.4E-11 97.1 6.4 74 278-351 406-484 (940)
127 KOG4208 Nucleolar RNA-binding 98.2 3.1E-06 6.6E-11 85.2 7.3 80 188-267 45-130 (214)
128 KOG4661 Hsp27-ERE-TATA-binding 98.2 4E-06 8.7E-11 94.0 7.8 78 189-266 402-484 (940)
129 KOG2193 IGF-II mRNA-binding pr 98.1 2.4E-07 5.3E-12 100.6 -2.9 152 193-351 2-156 (584)
130 KOG1457 RNA binding protein (c 98.1 1.3E-05 2.8E-10 81.4 8.8 79 276-354 33-120 (284)
131 KOG0151 Predicted splicing reg 98.0 9.4E-06 2E-10 93.5 7.5 84 183-266 165-256 (877)
132 KOG1365 RNA-binding protein Fu 98.0 4.7E-05 1E-09 82.5 12.1 142 191-333 59-225 (508)
133 KOG0533 RRM motif-containing p 97.9 1.7E-05 3.6E-10 83.2 7.2 76 191-266 82-161 (243)
134 KOG0151 Predicted splicing reg 97.9 1.1E-05 2.4E-10 92.9 6.0 78 274-351 171-256 (877)
135 KOG0533 RRM motif-containing p 97.9 3.7E-05 8.1E-10 80.7 8.1 78 276-353 82-163 (243)
136 KOG0129 Predicted RNA-binding 97.9 0.00012 2.6E-09 82.5 12.2 148 100-248 246-432 (520)
137 PF03467 Smg4_UPF3: Smg-4/UPF3 97.8 1.2E-05 2.6E-10 80.9 3.6 78 691-773 4-85 (176)
138 KOG0116 RasGAP SH3 binding pro 97.8 2.9E-05 6.3E-10 87.4 6.3 75 278-353 289-368 (419)
139 KOG0116 RasGAP SH3 binding pro 97.8 2.3E-05 5E-10 88.2 5.5 71 193-264 289-364 (419)
140 KOG0226 RNA-binding proteins [ 97.8 3.8E-05 8.2E-10 79.5 5.9 77 189-265 187-268 (290)
141 KOG1548 Transcription elongati 97.7 5.7E-05 1.2E-09 81.2 6.9 74 277-350 134-219 (382)
142 PF11608 Limkain-b1: Limkain b 97.7 0.00013 2.8E-09 63.9 7.4 70 278-352 3-77 (90)
143 KOG4209 Splicing factor RNPS1, 97.7 4.9E-05 1.1E-09 79.7 5.6 80 272-352 96-180 (231)
144 KOG4307 RNA binding protein RB 97.7 0.00011 2.4E-09 84.6 8.2 161 191-352 310-514 (944)
145 KOG4676 Splicing factor, argin 97.5 4.1E-05 8.8E-10 83.2 1.8 157 193-351 8-225 (479)
146 KOG0112 Large RNA-binding prot 97.5 0.00023 5E-09 84.4 7.8 152 114-267 372-531 (975)
147 PF04059 RRM_2: RNA recognitio 97.5 0.0004 8.7E-09 63.1 7.6 73 193-265 2-85 (97)
148 KOG4454 RNA binding protein (R 97.4 0.00011 2.5E-09 74.5 2.9 75 276-351 8-86 (267)
149 PF11608 Limkain-b1: Limkain b 97.3 0.0005 1.1E-08 60.4 6.3 68 193-265 3-75 (90)
150 KOG4209 Splicing factor RNPS1, 97.3 0.00024 5.3E-09 74.5 4.9 77 188-265 97-178 (231)
151 KOG4210 Nuclear localization s 97.3 0.00049 1.1E-08 74.5 7.3 156 112-268 86-265 (285)
152 PF08777 RRM_3: RNA binding mo 97.3 0.00047 1E-08 63.7 5.9 82 279-362 3-89 (105)
153 KOG0128 RNA-binding protein SA 97.2 0.00015 3.2E-09 85.7 1.8 148 192-340 571-735 (881)
154 COG5175 MOT2 Transcriptional r 96.7 0.0042 9.2E-08 66.7 7.7 76 277-352 114-203 (480)
155 KOG0115 RNA-binding protein p5 96.6 0.0026 5.7E-08 66.4 4.8 89 240-339 5-97 (275)
156 KOG1995 Conserved Zn-finger pr 96.5 0.002 4.4E-08 70.1 3.9 78 276-353 65-155 (351)
157 KOG1855 Predicted RNA-binding 96.4 0.0036 7.8E-08 69.3 5.0 67 271-337 225-309 (484)
158 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0052 1.1E-07 49.7 4.6 52 278-331 2-53 (53)
159 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.0069 1.5E-07 55.5 5.9 72 277-350 6-90 (100)
160 KOG1295 Nonsense-mediated deca 96.4 0.0025 5.3E-08 70.1 3.4 70 692-762 5-76 (376)
161 COG5175 MOT2 Transcriptional r 96.3 0.0059 1.3E-07 65.6 5.4 75 192-266 114-202 (480)
162 KOG2193 IGF-II mRNA-binding pr 96.2 0.0055 1.2E-07 67.6 5.0 100 279-381 3-107 (584)
163 PF08777 RRM_3: RNA binding mo 96.1 0.011 2.4E-07 54.6 6.0 59 193-252 2-60 (105)
164 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.014 3E-07 47.2 5.4 52 193-246 2-53 (53)
165 KOG3152 TBP-binding protein, a 96.0 0.0032 6.9E-08 65.7 2.1 68 276-343 73-157 (278)
166 KOG4307 RNA binding protein RB 96.0 0.015 3.2E-07 67.8 7.4 71 278-348 868-943 (944)
167 KOG1995 Conserved Zn-finger pr 96.0 0.0071 1.5E-07 65.9 4.5 77 191-267 65-154 (351)
168 KOG2202 U2 snRNP splicing fact 95.6 0.0058 1.3E-07 63.9 1.8 61 292-352 83-148 (260)
169 KOG2314 Translation initiation 95.5 0.025 5.3E-07 64.7 6.6 73 275-347 56-139 (698)
170 KOG1855 Predicted RNA-binding 95.2 0.019 4.1E-07 63.8 4.2 74 189-262 228-319 (484)
171 PF08952 DUF1866: Domain of un 94.9 0.058 1.3E-06 52.5 6.2 73 276-352 26-107 (146)
172 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.043 9.2E-07 50.4 5.0 73 191-265 5-90 (100)
173 KOG2314 Translation initiation 94.9 0.05 1.1E-06 62.3 6.5 70 192-261 58-138 (698)
174 KOG4849 mRNA cleavage factor I 94.6 0.03 6.4E-07 60.7 3.6 70 192-261 80-156 (498)
175 KOG3152 TBP-binding protein, a 94.5 0.029 6.2E-07 58.8 3.2 68 191-258 73-157 (278)
176 KOG1996 mRNA splicing factor [ 94.4 0.073 1.6E-06 56.7 5.8 61 291-351 300-366 (378)
177 PF15023 DUF4523: Protein of u 93.7 0.22 4.8E-06 48.1 7.3 76 273-351 82-161 (166)
178 KOG2202 U2 snRNP splicing fact 93.6 0.031 6.7E-07 58.6 1.3 59 207-265 83-146 (260)
179 PF08675 RNA_bind: RNA binding 93.5 0.23 5E-06 43.9 6.5 54 278-335 10-63 (87)
180 KOG4849 mRNA cleavage factor I 90.7 0.25 5.4E-06 53.8 4.0 75 278-352 81-162 (498)
181 KOG2416 Acinus (induces apopto 90.6 0.18 3.9E-06 58.3 3.0 78 187-265 439-520 (718)
182 KOG2135 Proteins containing th 90.5 0.37 8E-06 54.6 5.2 67 285-353 380-447 (526)
183 KOG4285 Mitotic phosphoprotein 90.3 1 2.2E-05 48.5 8.1 74 277-353 197-271 (350)
184 PF10309 DUF2414: Protein of u 90.1 1 2.3E-05 37.7 6.3 54 278-334 6-62 (62)
185 KOG2416 Acinus (induces apopto 90.0 0.25 5.3E-06 57.3 3.4 75 277-352 444-522 (718)
186 KOG4676 Splicing factor, argin 89.2 0.35 7.6E-06 53.5 3.7 72 278-350 8-87 (479)
187 PF15023 DUF4523: Protein of u 89.0 1.3 2.9E-05 43.0 6.9 74 189-265 83-160 (166)
188 KOG2591 c-Mpl binding protein, 88.9 0.81 1.8E-05 52.8 6.4 73 188-262 171-247 (684)
189 PF08952 DUF1866: Domain of un 88.9 0.67 1.4E-05 45.3 5.0 72 191-266 26-106 (146)
190 KOG2068 MOT2 transcription fac 88.5 0.25 5.3E-06 54.0 2.0 79 277-355 77-166 (327)
191 KOG0804 Cytoplasmic Zn-finger 87.3 1.2 2.5E-05 50.5 6.2 66 694-762 74-139 (493)
192 KOG1996 mRNA splicing factor [ 87.2 0.95 2.1E-05 48.5 5.2 60 206-265 300-365 (378)
193 PF08675 RNA_bind: RNA binding 86.6 2.6 5.7E-05 37.4 6.8 55 193-251 10-64 (87)
194 PF07576 BRAP2: BRCA1-associat 86.2 2.2 4.8E-05 39.9 6.6 68 693-762 11-78 (110)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 86.1 0.83 1.8E-05 46.2 4.1 76 191-266 6-97 (176)
196 KOG2068 MOT2 transcription fac 86.0 0.45 9.7E-06 52.0 2.2 75 193-267 78-163 (327)
197 PF04847 Calcipressin: Calcipr 85.6 1.3 2.9E-05 45.1 5.3 63 290-353 8-72 (184)
198 KOG2591 c-Mpl binding protein, 84.8 2.1 4.6E-05 49.5 6.8 93 242-346 150-246 (684)
199 KOG0115 RNA-binding protein p5 84.2 1 2.2E-05 47.6 3.7 70 193-262 32-109 (275)
200 PF14111 DUF4283: Domain of un 80.4 2.6 5.7E-05 40.7 4.9 105 203-311 28-139 (153)
201 PF10309 DUF2414: Protein of u 78.9 7.4 0.00016 32.7 6.3 52 193-249 6-62 (62)
202 KOG4285 Mitotic phosphoprotein 78.6 2.8 6E-05 45.4 4.6 67 194-263 199-266 (350)
203 KOG2135 Proteins containing th 76.4 1.4 3E-05 50.1 1.8 78 189-268 369-447 (526)
204 KOG4574 RNA-binding protein (c 74.8 2.1 4.5E-05 51.8 2.7 73 279-352 300-374 (1007)
205 PF04847 Calcipressin: Calcipr 73.0 3.3 7.1E-05 42.3 3.3 62 205-267 8-71 (184)
206 PF03880 DbpA: DbpA RNA bindin 71.5 13 0.00028 32.0 6.2 59 287-349 11-74 (74)
207 PF07292 NID: Nmi/IFP 35 domai 71.3 2.9 6.3E-05 37.6 2.2 66 232-298 1-73 (88)
208 KOG4574 RNA-binding protein (c 67.5 2.7 5.8E-05 50.9 1.5 73 194-267 300-374 (1007)
209 PF07576 BRAP2: BRCA1-associat 66.7 39 0.00084 31.7 8.7 64 192-255 13-80 (110)
210 KOG2253 U1 snRNP complex, subu 64.7 5.9 0.00013 47.0 3.5 69 276-348 39-107 (668)
211 KOG2253 U1 snRNP complex, subu 62.2 5.3 0.00011 47.4 2.5 70 190-263 38-107 (668)
212 KOG4019 Calcineurin-mediated s 54.4 11 0.00023 38.3 2.8 74 279-353 12-91 (193)
213 KOG0804 Cytoplasmic Zn-finger 53.1 31 0.00067 39.6 6.4 65 277-341 74-142 (493)
214 PF11767 SET_assoc: Histone ly 52.5 48 0.0011 28.2 6.1 55 288-346 11-65 (66)
215 KOG2318 Uncharacterized conser 50.6 47 0.001 39.3 7.5 78 187-264 169-305 (650)
216 PF11767 SET_assoc: Histone ly 47.3 47 0.001 28.3 5.3 56 202-261 10-65 (66)
217 KOG2891 Surface glycoprotein [ 38.0 16 0.00034 39.2 1.2 77 277-353 149-269 (445)
218 KOG4410 5-formyltetrahydrofola 28.5 1.6E+02 0.0034 32.1 6.7 47 278-325 331-378 (396)
219 KOG4483 Uncharacterized conser 26.5 1.3E+02 0.0027 34.3 5.8 54 277-332 391-445 (528)
220 PF03880 DbpA: DbpA RNA bindin 26.4 50 0.0011 28.3 2.3 59 202-264 11-74 (74)
221 KOG4410 5-formyltetrahydrofola 25.5 96 0.0021 33.7 4.5 49 192-241 330-379 (396)
222 PF02714 DUF221: Domain of unk 22.9 1.1E+02 0.0023 33.5 4.6 57 232-300 1-57 (325)
223 KOG0260 RNA polymerase II, lar 22.8 1.9E+03 0.041 29.1 16.8 26 389-416 1432-1457(1605)
224 KOG2318 Uncharacterized conser 22.2 2.4E+02 0.0051 33.7 7.1 74 276-349 173-305 (650)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.6e-59 Score=511.95 Aligned_cols=454 Identities=51% Similarity=0.750 Sum_probs=339.6
Q ss_pred HHHHHhcCCCcEEEeccCccCcccceEEEeecCccccCcccccccCCCCcccCCCCCCCCCCCcEEEEeCCCCCCCHHHH
Q 004002 130 EDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSEL 209 (780)
Q Consensus 130 el~dlFs~~G~i~V~~d~~esa~~g~~~v~~~~~~~a~~~~~~~l~n~~~k~~g~~~~~e~~s~tLfVgNLp~~vteeeL 209 (780)
+++++|...|++++..+....+.. . ....+....+..++|..+ +++ +| -+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---~--------------~~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---R--------------NSDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---c--------------ccccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 457889999999776664433221 1 112244556677778777 666 77 788
Q ss_pred HHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCCCCCCccceeecCCCCCC
Q 004002 210 RALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 289 (780)
Q Consensus 210 r~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~v 289 (780)
-.+|+.| ++.+ +.+++.+++.++++|+|.|||.+|
T Consensus 53 ~a~f~~~----------------------------------~~p~-----------~~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPF----------------------------------NKPL-----------RPDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred Hhhhhcc----------------------------------CCCC-----------CcCCCCcccCccceEEEEecCCcC
Confidence 8899888 1111 116677888999999999999999
Q ss_pred ChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchhhhHhhhhchhccHH
Q 004002 290 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQD 369 (780)
Q Consensus 290 teedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r~~~l~ql~~~~~~~ 369 (780)
++++|+++|+.||+|++|+.+...+|..||+|.|+.+|++|+++||+.+|.|++|+ ++...+++.+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999999 77777766554433
Q ss_pred HHHHHHhhhCCCCCCCCCCCcccCCCcCCCccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCcccccccCCCCcccc
Q 004002 370 ESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRG 449 (780)
Q Consensus 370 ~~~~~~~~~Gsp~~~s~P~~~~~~gsp~~~~~~~~~~~s~g~g~~sp~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 449 (780)
..+..++++|+++++|+.|. +..+||.++|.....+..... ++-.+ ..+...+.-
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~---------------~~~~~g~l~P~~s~~~~~~~~----~~~~~----~~~~~~~~~ 212 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWP---------------RGQLFGMLSPTRSSILLEHIS----SVDGS----SPGRETPLL 212 (549)
T ss_pred --chhhhhccchhhcCCCCCCc---------------CCcceeeeccchhhhhhhcch----hccCc----cccccccch
Confidence 55677899999999999994 345677788876543222111 11111 111223333
Q ss_pred chhhhhcccccccCCCcccCCCCCCCCCCCccCCccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCcccCCCCC
Q 004002 450 SLMEHALTNTISANGASFQQSNSFSEPKIGLYRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMG 529 (780)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 529 (780)
.| |.|.. ....-+|.++|... |..+++..++.+++++.-+|
T Consensus 213 ~h--q~~~~------~~~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~--------------------- 253 (549)
T KOG4660|consen 213 NH--QRFVE------FADNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVW--------------------- 253 (549)
T ss_pred hh--hhhhh------hccccchhhcccCC----------ceecCCCCceEEecCCCccc---------------------
Confidence 33 33332 11224446677632 66777777888888874444
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCcCCCcccccCCCCCCCCCCcccccCCCC
Q 004002 530 HPFSSNGKIHGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRA 609 (780)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~hhvgsap~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 609 (780)
+++... +.....+.+++||||||||+ ..++..-+++++.+..|.+.++-+.
T Consensus 254 n~~~~~---------r~~~~~~~~~~~~hi~~~Ps------------------~~~l~~~~~~~f~~~s~~~~~~~~~-- 304 (549)
T KOG4660|consen 254 NPFPSR---------RQRQNSSSSHYEHHIGSAPS------------------MHHLLSRISVGFNGGSGALEMNSNG-- 304 (549)
T ss_pred CCcccc---------ccccccCcccccCccCCCcc------------------cccccccCccccCCCCCCccccccc--
Confidence 222111 11223344578999999997 2234445667777777777665332
Q ss_pred CCCCC-ccCCCCcCCCCCc-ccccCCCCCCCcccCCCCCCCCCCCCCccccc---cccccccCCCCCCCcCcccccccch
Q 004002 610 SVNPG-ITVPRNLSDNGSS-FRVMSSPRLSPVFLGNGPYPGLTPANIEGLYE---RGRSRRIENNNGNQLDSKKQFQLEL 684 (780)
Q Consensus 610 ~~~~~-~~~~~n~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~---r~r~r~~~~~~~~~~~~~~~~~~~~ 684 (780)
..|-| ....+|+++..+. +++.+.++..+.|.+++.+ .+..|.+.+ ..|.||.+. ..++.+ ++++.+|+
T Consensus 305 ~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~----~~~~~~~~~~~~~~~~~Rtt~-~i~ni~-n~~~~~dl 378 (549)
T KOG4660|consen 305 QANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSY----TSQNDYPVELILNYRDRRTTV-MIKNIP-NKYGQLDL 378 (549)
T ss_pred cCCCCccccCcccccccCCCccccccCCCCccccccccc----ccccccccccccccccchhhh-hhhccc-cchhHHHH
Confidence 34555 5589999999987 9999999999999999966 334555555 788889887 555555 99999999
Q ss_pred hhhhcCCCcceeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEeeccccCCcceeeEEeccCCccchHHHHHHhcCceeE
Q 004002 685 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEVLFSCAIG 764 (780)
Q Consensus 685 ~~i~~~~d~rtt~mirniPn~~~~~~l~~~i~~~~~~~ydf~ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~~~~~~ 764 (780)
.+|.+|++.|||+||||||||||++||++. ||.++|+|||+||||||+|+||||||||||++|++|++||++|||++|+
T Consensus 379 ~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 379 LRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred HHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999988
Q ss_pred EEE
Q 004002 765 ILF 767 (780)
Q Consensus 765 ~~~ 767 (780)
.++
T Consensus 458 ~Fn 460 (549)
T KOG4660|consen 458 KFN 460 (549)
T ss_pred hhc
Confidence 654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.6e-32 Score=298.83 Aligned_cols=240 Identities=18% Similarity=0.294 Sum_probs=198.5
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCCCCC
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 187 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~~~ 187 (780)
++++|++||.+++|.+++++|+.+|.| .|..|..++..+|++++.|.+...|. .+++..+.+...++....+.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 689999999999999999999999997 67778888889999999999876664 34555565554444333332
Q ss_pred C-CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccc--ccc
Q 004002 188 G-EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKL 259 (780)
Q Consensus 188 ~-e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g--r~I 259 (780)
. ....++|||+|||.++++++|+.+|++||.|..++. ++.++|||||+|.+.++|++|++.|+|..+.+ ++|
T Consensus 84 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i 163 (352)
T TIGR01661 84 SDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI 163 (352)
T ss_pred ccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 2 234679999999999999999999999999988762 46789999999999999999999999999876 567
Q ss_pred ccccCCCCCCCCC----------------C--------------------------------------------------
Q 004002 260 DIHFSIPKDNPSD----------------K-------------------------------------------------- 273 (780)
Q Consensus 260 ~V~~a~pk~~~s~----------------~-------------------------------------------------- 273 (780)
.|.|+........ .
T Consensus 164 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR01661 164 TVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQR 243 (352)
T ss_pred EEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccccc
Confidence 7777643321000 0
Q ss_pred ----------------------CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHH
Q 004002 274 ----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRA 326 (780)
Q Consensus 274 ----------------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~ 326 (780)
.....+|||+|||.++++++|+++|++||.|++|++ ++.+||||||+|.+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 244 ASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred CCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 000125999999999999999999999999999986 67789999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 327 AEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 327 A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
|.+||.+|||..++|++|+|.|+.++..
T Consensus 324 A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 324 AAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999988764
No 3
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.98 E-value=3.1e-33 Score=251.03 Aligned_cols=72 Identities=58% Similarity=1.015 Sum_probs=70.6
Q ss_pred ceeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEeeccccCCcceeeEEeccCCccchHHHHHHhcCceeEE
Q 004002 694 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEVLFSCAIGI 765 (780)
Q Consensus 694 rtt~mirniPn~~~~~~l~~~i~~~~~~~ydf~ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~~~~~~~ 765 (780)
||||||||||||||++||+++||+.++|+||||||||||+++||+|||||||+++++|.+|+++|+|++|..
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999863
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=273.23 Aligned_cols=243 Identities=20% Similarity=0.343 Sum_probs=205.2
Q ss_pred HHhhhcCCceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCc
Q 004002 107 DELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAG 179 (780)
Q Consensus 107 ddl~s~v~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~ 179 (780)
+--....-+|+||++||+++.|++|+.+|...|.| +|++|+..+.++|++||+|..+..|. .++++.++.+
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G-- 153 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG-- 153 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC--
Confidence 33334557899999999999999999999999997 89999999999999999999886664 4556666543
Q ss_pred ccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEE------eCCCcceEEEEEEecHHHHHHHHHHccC-
Q 004002 180 TVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN- 251 (780)
Q Consensus 180 k~~g~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~-I~sv~------~tgkskG~aFV~F~~~e~A~~Al~~Lng- 251 (780)
+.-+ ......+++|||+|||+++++++|++.+.+.++ |..|. ...|+||||||+|+++.+|..|.++|-.
T Consensus 154 K~ig--vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 154 KLLG--VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred CEeE--EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 1111 122346799999999999999999999999986 44443 3578999999999999999999998744
Q ss_pred -ccccccccccccCCCCCCCCCCCC-CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHH
Q 004002 252 -KPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEA 329 (780)
Q Consensus 252 -~~l~gr~I~V~~a~pk~~~s~~~~-~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~ 329 (780)
.++.|..+.|.||.|...+.+..+ ..+.|||+||+.++|+|.|+++|++||.|+.|+.. |.||||.|.++++|.+
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davk 308 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVK 308 (506)
T ss_pred ceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHH
Confidence 457899999999999887665433 34789999999999999999999999999999764 6799999999999999
Q ss_pred HHHHhCCCccCCceEEEEecCCCchhh
Q 004002 330 ALKSLNRSDIAGKRIKLEPSRPGGARR 356 (780)
Q Consensus 330 Ai~~LnG~~i~Gr~L~V~~a~~k~~r~ 356 (780)
|++.|||++|+|..|.|.+|+|..+++
T Consensus 309 Am~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 309 AMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHhcCceecCceEEEEecCChhhhc
Confidence 999999999999999999999976544
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.3e-30 Score=304.58 Aligned_cols=265 Identities=19% Similarity=0.338 Sum_probs=215.5
Q ss_pred eeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccC---CCC
Q 004002 116 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVA---GEH 185 (780)
Q Consensus 116 el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~---g~~ 185 (780)
.++|++|+.+++|.+++++|+.+|.| .|..|..+..++|++++.|.+...|.. ++...+.+..+++. .+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 58999999999999999999999986 677788888899999999998776652 22222333332331 111
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 186 ~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
.......++|||+|||.++++++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|+|..+.++.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 122234578999999999999999999999999999873 5789999999999999999999999999999999999
Q ss_pred ccCCCCCCC-CCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004002 262 HFSIPKDNP-SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (780)
Q Consensus 262 ~~a~pk~~~-s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG 336 (780)
....++... .......++|||+||+.++|+++|+++|++||+|+++++ .++++|||||+|++.++|.+|++.|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 776655433 223345578999999999999999999999999999875 456789999999999999999999999
Q ss_pred CccC----CceEEEEecCCCchhhh----------------------HhhhhchhccHHHHHHHHhhhCC
Q 004002 337 SDIA----GKRIKLEPSRPGGARRN----------------------LMLQLNQELEQDESRILQHQVGS 380 (780)
Q Consensus 337 ~~i~----Gr~L~V~~a~~k~~r~~----------------------~l~ql~~~~~~~~~~~~~~~~Gs 380 (780)
..+. |+.|.|.+++++.++.. ++.++...+++++++.+|.++|.
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~ 311 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE 311 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence 9999 99999999887765521 33455566778888888877653
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.9e-31 Score=264.74 Aligned_cols=214 Identities=25% Similarity=0.428 Sum_probs=180.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
++..++|.|..||..+|+||||.+|...|+|++|+ ++|.+.||+||.|.++++|++|+..|||.+|..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44568999999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 264 a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
++|.. ..++..+|||++||+.+|..||+++|++||.|...| +++.+||.|||+|+.+.+|++||+.|||..
T Consensus 118 ARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 99854 456778999999999999999999999999998765 478899999999999999999999999999
Q ss_pred cCC--ceEEEEecCCCchhhhHhhhhchhccHHHHHHHHhhhCCCCCCCCCCCcccCCCcCCCcccccc------CCCCC
Q 004002 339 IAG--KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTI------SKSPN 410 (780)
Q Consensus 339 i~G--r~L~V~~a~~k~~r~~~l~ql~~~~~~~~~~~~~~~~Gsp~~~s~P~~~~~~gsp~~~~~~~~~------~~s~g 410 (780)
..| .+|.|+|+....++....- +. .-|++| . ++|++|+++ +.+.+ .....
T Consensus 194 P~g~tepItVKFannPsq~t~~a~----------ls---~ly~sp------~--rr~~Gp~hh-~~~r~r~~~~~~~~~~ 251 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQAL----------LS---QLYQSP------A--RRYGGPMHH-QAQRFRLDNLLNPHAA 251 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhh----------hH---HhhcCc------c--ccCCCcccc-hhhhhccccccchhhh
Confidence 988 5899999987654432110 11 123333 2 568999998 55554 23334
Q ss_pred CCCCCCCCCCCCCCCccc
Q 004002 411 FRNMSPTTSNHMPGLASI 428 (780)
Q Consensus 411 ~g~~sp~~~~~~~~l~~~ 428 (780)
..++||++.+++.+|++.
T Consensus 252 ~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 252 QARFSPMTIDGMSGLAGV 269 (360)
T ss_pred hccCCCccccccceeeee
Confidence 568999999999998664
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2e-29 Score=294.44 Aligned_cols=246 Identities=19% Similarity=0.321 Sum_probs=199.6
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCC--
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEH-- 185 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~-- 185 (780)
..++|++|+.++++.+++++|+.+|.| .|..+ ..+..++++++.|.+.+.|.. +++..+.+....+....
T Consensus 89 ~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 89 GNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred CceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 569999999999999999999999997 34333 355678999999998766642 22233333322221111
Q ss_pred ----CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccc--
Q 004002 186 ----PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-- 255 (780)
Q Consensus 186 ----~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~-- 255 (780)
.......++|||+|||.++|+++|+++|++||+|.+++ ..++++|||||+|.+.++|.+|++.|+|..+.
T Consensus 168 ~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~ 247 (562)
T TIGR01628 168 HEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLA 247 (562)
T ss_pred cccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEeccc
Confidence 11223457899999999999999999999999999887 35778999999999999999999999999999
Q ss_pred --ccccccccCCCCCCCCC--------------CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCccc
Q 004002 256 --RRKLDIHFSIPKDNPSD--------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRH 315 (780)
Q Consensus 256 --gr~I~V~~a~pk~~~s~--------------~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG 315 (780)
|+.+.|.++..+..... ......+|||+||+.++|+++|+++|++||.|++|++ ++.++|
T Consensus 248 ~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g 327 (562)
T TIGR01628 248 KEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRG 327 (562)
T ss_pred ccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCC
Confidence 99999988866543310 1223468999999999999999999999999999976 567899
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchhhhHhhh
Q 004002 316 HKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQ 361 (780)
Q Consensus 316 ~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r~~~l~q 361 (780)
||||+|.+.++|.+|++.|||+.+.|++|.|.+++.+..++..+++
T Consensus 328 ~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~ 373 (562)
T TIGR01628 328 FGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQD 373 (562)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHH
Confidence 9999999999999999999999999999999999998877655443
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=5.5e-29 Score=286.30 Aligned_cols=233 Identities=21% Similarity=0.306 Sum_probs=192.3
Q ss_pred CCceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCC-CcccCCC
Q 004002 113 IMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNG-AGTVAGE 184 (780)
Q Consensus 113 v~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~-~~k~~g~ 184 (780)
..++++|++||.+++|++++++|+.+|.| .|.+| .+..+++++++.|.+.+.|. .++.+.+.++ ...+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V--- 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV--- 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc---
Confidence 45899999999999999999999999976 67777 77889999999999877665 2334444322 1111
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEE-E-----eCCCcceEEEEEEecHHHHHHHHHHccC--cccc
Q 004002 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTL-Y-----TACKHRGFVMISYYDIRAARTAMRALQN--KPLR 255 (780)
Q Consensus 185 ~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~-I~sv-~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng--~~l~ 255 (780)
......++|||+|||.++|+++|+++|+++++ +.++ . ..++++|||||+|.++++|++|++.|.. ..+.
T Consensus 133 --~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 133 --CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred --cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 12235689999999999999999999999964 3332 2 2467899999999999999999998864 3578
Q ss_pred ccccccccCCCCCCCCCCC-CCccceeecCCCCCCChhHHHHHhccc--CCeeEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 004002 256 RRKLDIHFSIPKDNPSDKD-LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALK 332 (780)
Q Consensus 256 gr~I~V~~a~pk~~~s~~~-~~~~~L~V~NLp~~vteedL~~~Fs~y--G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~ 332 (780)
|+.|.|.|+.++....+.. ...++|||+||+.++++++|+++|++| |+|+.|++. ++||||+|++.++|++|++
T Consensus 211 Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 211 GHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred CceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHH
Confidence 9999999998865443322 234689999999999999999999999 999999764 6899999999999999999
Q ss_pred HhCCCccCCceEEEEecCCCch
Q 004002 333 SLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 333 ~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
.|||.+|.|+.|+|+++++...
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCc
Confidence 9999999999999999988643
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.2e-29 Score=252.05 Aligned_cols=216 Identities=17% Similarity=0.316 Sum_probs=178.4
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCcccccccCCCCcccCCCCCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEH 190 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~~~~~l~n~~~k~~g~~~~~e~ 190 (780)
-+.|||++|..+++|+.+..||...|.+ .|.+|.. + ..++... .... .....
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~-----v~wa~~p---~nQs---------k~t~~ 60 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------K-----VNWATAP---GNQS---------KPTSN 60 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------c-----cccccCc---ccCC---------CCccc
Confidence 3679999999999999999999999987 5555510 0 1111111 0000 00011
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..-.+||+.|..+++.++||+.|.+||+|.+++ .++|+||||||.|.+.++|++||..|+|..|++|.|+-.|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 134799999999999999999999999999887 479999999999999999999999999999999999999998
Q ss_pred CCCCCCC------------CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 004002 266 PKDNPSD------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 266 pk~~~s~------------~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
.|....- .....++|||+|++..++|++|++.|++||.|.+||+.+ -+||+||+|++.|+|.+||..
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHH
Confidence 7653211 123457999999999999999999999999999999974 479999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCchh
Q 004002 334 LNRSDIAGKRIKLEPSRPGGAR 355 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~k~~r 355 (780)
||+++|+|..++|.|.+.....
T Consensus 220 mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred hcCceeCceEEEEeccccCCCC
Confidence 9999999999999999876543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=9.6e-28 Score=275.32 Aligned_cols=233 Identities=19% Similarity=0.243 Sum_probs=179.5
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcEE-EeccCccCcccceEEEeecCccccCccc------ccccCCCCcccCCC---
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGME-LEGEPQESLSMSMSKISISDSASGNGLL------HYSVPNGAGTVAGE--- 184 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i~-V~~d~~esa~~g~~~v~~~~~~~a~~~~------~~~l~n~~~k~~g~--- 184 (780)
..++|++||.+++|.+++++|+.+|.|. |.+- ..++++++.|.+.+.|..+. ...+.+....+...
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~----~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMML----PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE----CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 4689999999999999999999999982 2111 13578888888876665332 22333332222110
Q ss_pred ---CCC-------CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC-CCcceEEEEEEecHHHHHHHHHHccCcc
Q 004002 185 ---HPY-------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKP 253 (780)
Q Consensus 185 ---~~~-------~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t-gkskG~aFV~F~~~e~A~~Al~~Lng~~ 253 (780)
... ......+|||+||+..+|+++|+++|+.||+|.+|++. .+.+|+|||+|.+.++|.+|++.|||..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 000 11122479999999999999999999999999998743 3335799999999999999999999999
Q ss_pred ccc--cccccccCCCCCC-------CC----------C------------------------------------------
Q 004002 254 LRR--RKLDIHFSIPKDN-------PS----------D------------------------------------------ 272 (780)
Q Consensus 254 l~g--r~I~V~~a~pk~~-------~s----------~------------------------------------------ 272 (780)
|.+ +.|+|.|+.+... .+ +
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGG 238 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccc
Confidence 964 4677777654210 00 0
Q ss_pred --------------------------------CCCCccceeecCCCC-CCChhHHHHHhcccCCeeEEEeCCCcccEEEE
Q 004002 273 --------------------------------KDLNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFI 319 (780)
Q Consensus 273 --------------------------------~~~~~~~L~V~NLp~-~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV 319 (780)
......+|||+|||. .+|+++|+++|+.||.|..|++...++|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV 318 (481)
T TIGR01649 239 DRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALI 318 (481)
T ss_pred ccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEE
Confidence 001235899999997 69999999999999999999986667899999
Q ss_pred EEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 320 EFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 320 ~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
+|.+.++|++||+.|||..|.|++|+|.+++.
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 99999999999999999999999999998754
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=1.1e-27 Score=262.84 Aligned_cols=162 Identities=23% Similarity=0.425 Sum_probs=145.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
....++|||+|||+++|+++|+++|+.||+|++|+ .+++++|||||+|.++++|++||+.|++..|.+++|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34679999999999999999999999999999887 3678999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 264 a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
+.+... .....+|||+|||.++|+++|+++|++||+|+.|++ +++++++|||+|+++++|++||+.||+..
T Consensus 184 a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 184 ARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred cccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 876432 234568999999999999999999999999999875 56778999999999999999999999999
Q ss_pred cCC--ceEEEEecCCCch
Q 004002 339 IAG--KRIKLEPSRPGGA 354 (780)
Q Consensus 339 i~G--r~L~V~~a~~k~~ 354 (780)
+.| ++|+|.+++....
T Consensus 260 ~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCceeEEEEECCcccc
Confidence 876 6899999886543
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=239.54 Aligned_cols=245 Identities=20% Similarity=0.308 Sum_probs=197.7
Q ss_pred ccccccccCCCCCCchHHhhhcCCceeeeccCCCCCChHHHHHHhcCCCcEEEeccCccCcccceEEEeecCccccC---
Q 004002 91 EGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN--- 167 (780)
Q Consensus 91 ee~e~~~i~nlLP~deddl~s~v~~el~V~~Lp~s~~E~el~dlFs~~G~i~V~~d~~esa~~g~~~v~~~~~~~a~--- 167 (780)
+|..+.+|+|+||.. |++.+++.|+.+++|+|.+ .|..|..++.+.|+.|+.+.+...|.
T Consensus 38 ~~skTNLIvNYLPQ~--------MTqdE~rSLF~SiGeiESc---------KLvRDKitGqSLGYGFVNYv~p~DAe~Ai 100 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQN--------MTQDELRSLFGSIGEIESC---------KLVRDKITGQSLGYGFVNYVRPKDAEKAI 100 (360)
T ss_pred Ccccceeeeeecccc--------cCHHHHHHHhhcccceeee---------eeeeccccccccccceeeecChHHHHHHH
Confidence 445577788888866 4544444444444444433 45677888999999999998876553
Q ss_pred -cccccccCCCCcccCCCCCCCC-CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHH
Q 004002 168 -GLLHYSVPNGAGTVAGEHPYGE-HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIR 240 (780)
Q Consensus 168 -~~~~~~l~n~~~k~~g~~~~~e-~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e 240 (780)
.+++.++.++.+++....|..+ ....+|||.+||+.+|..||.++|++||.|...+ +++.+||.|||.|...+
T Consensus 101 ntlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 101 NTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred hhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 6677888999899988877644 4568999999999999999999999999987655 57999999999999999
Q ss_pred HHHHHHHHccCccccc--cccccccCCCCCCCCC-------------C--------------------------------
Q 004002 241 AARTAMRALQNKPLRR--RKLDIHFSIPKDNPSD-------------K-------------------------------- 273 (780)
Q Consensus 241 ~A~~Al~~Lng~~l~g--r~I~V~~a~pk~~~s~-------------~-------------------------------- 273 (780)
+|+.||+.|||..-.| .+|.|+|+........ +
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~ 260 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTI 260 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccc
Confidence 9999999999988655 4788888753321100 0
Q ss_pred --------------CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 004002 274 --------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 334 (780)
Q Consensus 274 --------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~L 334 (780)
.....+|||.||.++.+|.-|+++|++||.|..|++ +.+.||||||.+.+.++|..||..|
T Consensus 261 d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sL 340 (360)
T KOG0145|consen 261 DGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 340 (360)
T ss_pred cccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHh
Confidence 001148999999999999999999999999999875 5788999999999999999999999
Q ss_pred CCCccCCceEEEEecCCC
Q 004002 335 NRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 335 nG~~i~Gr~L~V~~a~~k 352 (780)
||+.+++|.|.|.|...+
T Consensus 341 NGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 341 NGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCccccceEEEEEEecCC
Confidence 999999999999998654
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.1e-26 Score=253.21 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=143.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
+.++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++||+.|+|..|.|++|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999872 57899999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~ 340 (780)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|++.++|++||+.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 7543 234568999999999999999999999999988865 4567899999999999999999999999998
Q ss_pred C--ceEEEEecCCCc
Q 004002 341 G--KRIKLEPSRPGG 353 (780)
Q Consensus 341 G--r~L~V~~a~~k~ 353 (780)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678888886544
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=6.8e-26 Score=260.06 Aligned_cols=162 Identities=25% Similarity=0.335 Sum_probs=139.5
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 191 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 191 ~s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
++++|||+|||+ .+|+++|+++|+.||+|.+|+.....+|||||+|.+.++|++|++.|+|..|.|++|+|.++.....
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 567999999998 6999999999999999999986545689999999999999999999999999999999998754311
Q ss_pred CCC------------C---------------------CCCccceeecCCCCCCChhHHHHHhcccCC--eeEEEeCCC--
Q 004002 270 PSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRETPH-- 312 (780)
Q Consensus 270 ~s~------------~---------------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~--I~~v~~~g~-- 312 (780)
... + .....+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 354 ~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~ 433 (481)
T TIGR01649 354 QPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN 433 (481)
T ss_pred cCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC
Confidence 000 0 012358999999999999999999999998 888877433
Q ss_pred -cccEEEEEEcCHHHHHHHHHHhCCCccCCce------EEEEecCCC
Q 004002 313 -KRHHKFIEFYDVRAAEAALKSLNRSDIAGKR------IKLEPSRPG 352 (780)
Q Consensus 313 -srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~------L~V~~a~~k 352 (780)
++++|||+|++.++|.+||..|||+.|.|+. |+|.+++++
T Consensus 434 ~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 434 ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999864
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.3e-25 Score=255.78 Aligned_cols=239 Identities=21% Similarity=0.282 Sum_probs=188.1
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCcc---cccccCCCCcccCC----
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTVAG---- 183 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~---~~~~l~n~~~k~~g---- 183 (780)
...++|++||..+++.+++++|+.+|.| .|..+..+...+|++++.|.+...|..+ .+..+.+..+.+..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 3679999999999999999999999997 6677777888999999999987665422 22222222111100
Q ss_pred --------CC-CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHc
Q 004002 184 --------EH-PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249 (780)
Q Consensus 184 --------~~-~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~L 249 (780)
.. .......++|||+|||.++|+++|+++|++||.|..|+. +++++|||||+|.+.++|.+|++.|
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 00 001122589999999999999999999999999998872 4688999999999999999999999
Q ss_pred cCccccccccccccCCCCCCCC----------------------------------C-----------------------
Q 004002 250 QNKPLRRRKLDIHFSIPKDNPS----------------------------------D----------------------- 272 (780)
Q Consensus 250 ng~~l~gr~I~V~~a~pk~~~s----------------------------------~----------------------- 272 (780)
+|..|.|++|.|.|+....... .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953210000 0
Q ss_pred -----------------------------CCCCccceeecCCCCCCC----------hhHHHHHhcccCCeeEEEeC-CC
Q 004002 273 -----------------------------KDLNQGTLVVFNLDPSVS----------NEDLRQIFGAYGEVKEIRET-PH 312 (780)
Q Consensus 273 -----------------------------~~~~~~~L~V~NLp~~vt----------eedL~~~Fs~yG~I~~v~~~-g~ 312 (780)
......+|+|.||-...+ .+||++.|++||.|+.|.+. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~ 408 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN 408 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 012235688888854443 36899999999999999875 77
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 313 srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
..|++||+|.++++|++|++.|||+.++|+.|.+.+....
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 7899999999999999999999999999999999988643
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.6e-25 Score=255.27 Aligned_cols=238 Identities=16% Similarity=0.208 Sum_probs=174.6
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---------EEeccCccCcccceEEEeecCccccCcc---cccccCCCCccc
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---------ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTV 181 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---------~V~~d~~esa~~g~~~v~~~~~~~a~~~---~~~~l~n~~~k~ 181 (780)
..+|||++||.++++.+|.++|..++.. .+..+......++++++.|.+...|..+ .+..+.+...++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v 254 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKI 254 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEe
Confidence 5689999999999999999999974110 0001111234467888888776555422 111111111111
Q ss_pred CCC------------------------------CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCC
Q 004002 182 AGE------------------------------HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TAC 226 (780)
Q Consensus 182 ~g~------------------------------~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tg 226 (780)
... ........++|||+|||..+|+++|+++|+.||.|..+. .++
T Consensus 255 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 334 (509)
T TIGR01642 255 RRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG 334 (509)
T ss_pred cCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC
Confidence 000 000123457999999999999999999999999998876 268
Q ss_pred CcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCC------------------------CCCCccceee
Q 004002 227 KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD------------------------KDLNQGTLVV 282 (780)
Q Consensus 227 kskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~------------------------~~~~~~~L~V 282 (780)
+++|||||+|.+.++|+.|++.|+|..|.|++|.|.++........ ......+|+|
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l 414 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQL 414 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEe
Confidence 8999999999999999999999999999999999998754321110 0123467899
Q ss_pred cCCCCC--C--------ChhHHHHHhcccCCeeEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 004002 283 FNLDPS--V--------SNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (780)
Q Consensus 283 ~NLp~~--v--------teedL~~~Fs~yG~I~~v~~~--------g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L 344 (780)
.||... + ..++|+++|++||.|+.|++. +..+|++||+|.++++|++||.+|||..|.|+.|
T Consensus 415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 998532 1 136799999999999999863 1246899999999999999999999999999999
Q ss_pred EEEecCC
Q 004002 345 KLEPSRP 351 (780)
Q Consensus 345 ~V~~a~~ 351 (780)
.|.|...
T Consensus 495 ~~~~~~~ 501 (509)
T TIGR01642 495 VAAFYGE 501 (509)
T ss_pred EEEEeCH
Confidence 9998764
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.9e-25 Score=257.63 Aligned_cols=163 Identities=20% Similarity=0.405 Sum_probs=143.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|||+|||+++++++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|+|..|.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 458999999999999999999999999999987 368899999999999999999999999999999999998654
Q ss_pred CCCCCC-------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 004002 266 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 266 pk~~~s-------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
...... .......+|||+||+.++++++|+++|++||.|++|++ ++++||||||+|++.++|.+||..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 321110 11123468999999999999999999999999999976 456899999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 004002 334 LNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~k~ 353 (780)
|||.+++|+.|+|.++.++.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999887654
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=9.1e-24 Score=231.57 Aligned_cols=243 Identities=19% Similarity=0.294 Sum_probs=193.0
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC---------cccccccCCCCccc-
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---------GLLHYSVPNGAGTV- 181 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~---------~~~~~~l~n~~~k~- 181 (780)
..++|++||.++...++-++|+.+|+| +|..+...+..+||.+++|+-.+..+ .+.++.+...+.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 469999999999999999999999998 88888888899999999988543332 12222221110000
Q ss_pred -------CC-----CCCC---------CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEE
Q 004002 182 -------AG-----EHPY---------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISY 236 (780)
Q Consensus 182 -------~g-----~~~~---------~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F 236 (780)
.+ +.+. ...+..+|+|+|||+.+.+.+|+.+|+.||.|..|.+ .++.+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 00 0011 1233678999999999999999999999999999973 567789999999
Q ss_pred ecHHHHHHHHHHccCccccccccccccCCCCCCCCC-----------------------------------------C--
Q 004002 237 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD-----------------------------------------K-- 273 (780)
Q Consensus 237 ~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~-----------------------------------------~-- 273 (780)
.+..+|.+||+.+|+..|.||+|.|.||.+++.... +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999866532100 0
Q ss_pred CC-------------------------------------------CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-
Q 004002 274 DL-------------------------------------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 309 (780)
Q Consensus 274 ~~-------------------------------------------~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~- 309 (780)
+. ...+|||.|||+++|+++|.+.|++||+|..+.+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00 0048999999999999999999999999998753
Q ss_pred ----CCCcccEEEEEEcCHHHHHHHHHHh-----CC-CccCCceEEEEecCCCchhhh
Q 004002 310 ----TPHKRHHKFIEFYDVRAAEAALKSL-----NR-SDIAGKRIKLEPSRPGGARRN 357 (780)
Q Consensus 310 ----~g~srG~aFV~F~~~e~A~~Ai~~L-----nG-~~i~Gr~L~V~~a~~k~~r~~ 357 (780)
+++++|.|||.|.+..+|.+||.+. .| ..+.||.|+|..+-.+.+...
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAAD 383 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHH
Confidence 8899999999999999999999987 23 578999999999988766543
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.4e-24 Score=232.63 Aligned_cols=241 Identities=19% Similarity=0.329 Sum_probs=194.7
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----ccc-ccccCCC--CcccCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLL-HYSVPNG--AGTVAG 183 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~-~~~l~n~--~~k~~g 183 (780)
+.++||+.+|+.++|.+++.+|+.+|.| .|..|+.+.+.+|++|+.+.....+. .+. ...+++. ...+..
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4689999999999999999999999997 67788999999999999998765443 221 2222322 112211
Q ss_pred CCCCCC--CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcc-ccc
Q 004002 184 EHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR 256 (780)
Q Consensus 184 ~~~~~e--~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~-l~g 256 (780)
....++ ...++|||+-|++.+||+|++++|++||.|++|+ ..+.+||||||.|.+.+.|..||++|||.. +.|
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 111112 3468999999999999999999999999999998 357899999999999999999999999964 544
Q ss_pred --cccccccCCCCCCCCCCC------------------------------------------------------------
Q 004002 257 --RKLDIHFSIPKDNPSDKD------------------------------------------------------------ 274 (780)
Q Consensus 257 --r~I~V~~a~pk~~~s~~~------------------------------------------------------------ 274 (780)
.+|.|+|+++++++..+.
T Consensus 194 cs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~ 273 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQ 273 (510)
T ss_pred CCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhH
Confidence 589999987765431000
Q ss_pred --------------------------------------------------------------------------------
Q 004002 275 -------------------------------------------------------------------------------- 274 (780)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (780)
T Consensus 274 ~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~ 353 (510)
T KOG0144|consen 274 LQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAG 353 (510)
T ss_pred HHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------CCccceeecCCC
Q 004002 275 --------------------------------------------------------------------LNQGTLVVFNLD 286 (780)
Q Consensus 275 --------------------------------------------------------------------~~~~~L~V~NLp 286 (780)
....+|||.+||
T Consensus 354 a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlP 433 (510)
T KOG0144|consen 354 AGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLP 433 (510)
T ss_pred ccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCc
Confidence 000379999999
Q ss_pred CCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 287 PSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 287 ~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
.+.-+.+|-..|.+||.|++.++ ++.++.|+||.|++..+|.+||..|||..|++++++|...+.+..
T Consensus 434 qefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 434 QEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred hhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999998763 778899999999999999999999999999999999988876543
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.9e-24 Score=228.56 Aligned_cols=163 Identities=23% Similarity=0.442 Sum_probs=143.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcc-ccc--cccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIH 262 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~-l~g--r~I~V~ 262 (780)
+.-+|||+-||+.++|+|||.+|++||.|.+|. .++.++|||||.|.+.++|.+|+.+|++.. |.| .+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 447999999999999999999999999998876 578899999999999999999999998865 544 588889
Q ss_pred cCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCC-
Q 004002 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS- 337 (780)
Q Consensus 263 ~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~- 337 (780)
|+....+.. ..+.+|||+-|++.+||.|++++|++||.|++|++ .+.+||||||+|.+.+.|..||++|||.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 887544322 34678999999999999999999999999999975 5789999999999999999999999996
Q ss_pred ccCC--ceEEEEecCCCchhh
Q 004002 338 DIAG--KRIKLEPSRPGGARR 356 (780)
Q Consensus 338 ~i~G--r~L~V~~a~~k~~r~ 356 (780)
++.| .+|.|+||++++.+.
T Consensus 190 tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeccCCCceEEEecccCCCch
Confidence 7777 589999999887653
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.7e-23 Score=238.44 Aligned_cols=162 Identities=26% Similarity=0.458 Sum_probs=142.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
+...++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 456789999999999999999999999999999873 57899999999999999999997 899999999999988
Q ss_pred CCCCCCCCC--------CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHH
Q 004002 264 SIPKDNPSD--------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAA 330 (780)
Q Consensus 264 a~pk~~~s~--------~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~A 330 (780)
+........ ......+|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 654322211 1122478999999999999999999999999999875 357789999999999999999
Q ss_pred HHHhCCCccCCceEEEEecCC
Q 004002 331 LKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 331 i~~LnG~~i~Gr~L~V~~a~~ 351 (780)
++.|||..|.|+.|+|.++..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999984
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=6.4e-22 Score=228.50 Aligned_cols=153 Identities=13% Similarity=0.236 Sum_probs=125.3
Q ss_pred CCceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCCC
Q 004002 113 IMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 185 (780)
Q Consensus 113 v~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~ 185 (780)
.+.++||++|+.+++|.+++++|+.+|.| .+.+|..++..+|++|+.|.+...+. .+++..+.+...++....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999997 67778888899999999999887664 233444444332222110
Q ss_pred C------------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHH
Q 004002 186 P------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRA 248 (780)
Q Consensus 186 ~------------~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~ 248 (780)
. ......++|||+|||+++++++|+++|++||+|.+|+ .++++||||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 0 1112347999999999999999999999999999987 2578999999999999999999999
Q ss_pred ccCccccccccccccCC
Q 004002 249 LQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 249 Lng~~l~gr~I~V~~a~ 265 (780)
||+..|+|+.|+|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999997754
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.5e-22 Score=233.36 Aligned_cols=178 Identities=22% Similarity=0.319 Sum_probs=153.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccc-ccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~-gr~I~V~~a~ 265 (780)
..++|||+|||++++|++|+++|++||.|.+|+ .++++||||||+|.+.++|++||+.|++..|. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 458999999999999999999999999999987 36889999999999999999999999999985 7888887653
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCC-eeEEEe------CCCcccEEEEEEcCHHHHHHHHHHhCC--
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR-- 336 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~-I~~v~~------~g~srG~aFV~F~~~e~A~~Ai~~LnG-- 336 (780)
..++|||+|||.++++++|++.|++++. |+++.+ .++++|||||+|+++++|++|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999863 333322 345789999999999999999999864
Q ss_pred CccCCceEEEEecCCCch---------hhhHhhhhchhccHHHHHHHHhhh
Q 004002 337 SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQV 378 (780)
Q Consensus 337 ~~i~Gr~L~V~~a~~k~~---------r~~~l~ql~~~~~~~~~~~~~~~~ 378 (780)
..+.|+.|.|+++.++.. +..++.++...+++++++.+|.++
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 367899999999987542 235678898999999999999988
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=5.3e-23 Score=232.36 Aligned_cols=323 Identities=19% Similarity=0.237 Sum_probs=218.1
Q ss_pred CCCceeecCCCccccccCCCccccccCCcccccccccCcCCCCCCcccccccCcccccCCCCCCCCcccccccccCCCCC
Q 004002 24 GGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLP 103 (780)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~fsssl~~~~~~kl~~~~s~~~~~~~d~~~~~~k~~~~eee~~e~~ee~e~~~i~nlLP 103 (780)
+-.+|++|..|+++...+|+..|+||+.++++.+-.-+.. ...+.....|++ +.+.........-..||.|.
T Consensus 249 a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~----~~~~~~~~~~k~----~ke~~rk~~~~~~~~wn~l~ 320 (725)
T KOG0110|consen 249 AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAK----EDASELGSDYKK----EKELKRKAASASFHSWNTLF 320 (725)
T ss_pred HHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhh----hhHhhcCCcHHH----HHHhccccchhcceeccccc
Confidence 3456899999999999999999999999999887653222 111111111322 22222222222222344444
Q ss_pred CchHHhhhcC------------------------------------------------------CceeeeccCCCCCChH
Q 004002 104 DDEDELLAGI------------------------------------------------------MDDFDLRGLPSSLEDL 129 (780)
Q Consensus 104 ~deddl~s~v------------------------------------------------------~~el~V~~Lp~s~~E~ 129 (780)
..++.++..+ -+-+.+++||....+.
T Consensus 321 ~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~ 400 (725)
T KOG0110|consen 321 MGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSE 400 (725)
T ss_pred ccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccH
Confidence 3322211110 0236689999999999
Q ss_pred HHHHHhcCCCcE------------EEeccCccCcccceEEEeecCccccC--------cccc-----cccCCCCccc---
Q 004002 130 EDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASGN--------GLLH-----YSVPNGAGTV--- 181 (780)
Q Consensus 130 el~dlFs~~G~i------------~V~~d~~esa~~g~~~v~~~~~~~a~--------~~~~-----~~l~n~~~k~--- 181 (780)
++.++|..+|.| .|+|.....+-.++.++.+.....+. .+.. -.+.+.....
T Consensus 401 elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee 480 (725)
T KOG0110|consen 401 ELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEE 480 (725)
T ss_pred HHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCcccccccccccccccc
Confidence 999999999976 22333333333344333332111110 1111 0000000000
Q ss_pred ---------CC-----CC-----C-----CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC--------CCcc
Q 004002 182 ---------AG-----EH-----P-----YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHR 229 (780)
Q Consensus 182 ---------~g-----~~-----~-----~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t--------gksk 229 (780)
.+ .. + ......++|||+||++++|.++|..+|..+|.|.++.+. ..+.
T Consensus 481 ~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSm 560 (725)
T KOG0110|consen 481 NPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSM 560 (725)
T ss_pred CcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccccccc
Confidence 00 00 0 001112349999999999999999999999999998521 2356
Q ss_pred eEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCC-----CCCCCCccceeecCCCCCCChhHHHHHhcccCCe
Q 004002 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP-----SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV 304 (780)
Q Consensus 230 G~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~-----s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I 304 (780)
|||||+|.+.++|++|++.|+|+.|.|..|.|+++..+... .......++|+|+|||+..+..+++++|+.||.|
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGql 640 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQL 640 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccce
Confidence 99999999999999999999999999999999998721110 0111224689999999999999999999999999
Q ss_pred eEEEeCCC-----cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 305 KEIRETPH-----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 305 ~~v~~~g~-----srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
++|++..+ .+|||||+|-+..+|.+|+.+|.++.+.||+|.++|++....
T Consensus 641 ksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 641 KSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred eeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 99987432 489999999999999999999999999999999999998765
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.7e-22 Score=218.47 Aligned_cols=235 Identities=15% Similarity=0.307 Sum_probs=191.6
Q ss_pred eeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCCCCCC
Q 004002 116 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 188 (780)
Q Consensus 116 el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~~~~ 188 (780)
.++|+ .+++|..++++|+..|.+ +|+.|. + +.|++++.|.+...|. .++...+.+....+.-. .
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s---~ 73 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS---Q 73 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh---c
Confidence 46777 899999999999999996 888888 5 8889999998876654 23222333333332211 1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
+....|||+||++++|.++|.++|+.||+|.+|++ ...++|| ||+|.++++|++|++.+||..+.+++|.|....
T Consensus 74 -rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 74 -RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred -cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 12233999999999999999999999999999983 2339999 999999999999999999999999999998776
Q ss_pred CCCCCCCC----CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 004002 266 PKDNPSDK----DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (780)
Q Consensus 266 pk~~~s~~----~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~ 337 (780)
++..+... .....+++|.|++.+++++.|..+|+.||.|..+.+ .+++++|+||.|++.++|..|++.|+|.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 65543322 223468999999999999999999999999999875 4567999999999999999999999999
Q ss_pred ccCCceEEEEecCCCchhhhHhhh
Q 004002 338 DIAGKRIKLEPSRPGGARRNLMLQ 361 (780)
Q Consensus 338 ~i~Gr~L~V~~a~~k~~r~~~l~q 361 (780)
.+.++.+.|..++++.++...++.
T Consensus 232 ~~~~~~~~V~~aqkk~e~~~~l~~ 255 (369)
T KOG0123|consen 232 IFGDKELYVGRAQKKSEREAELKR 255 (369)
T ss_pred cCCccceeecccccchhhHHHHhh
Confidence 999999999999987766554443
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=3.8e-22 Score=230.17 Aligned_cols=163 Identities=17% Similarity=0.290 Sum_probs=135.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcC------------CCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~y------------G~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
.....++|||+|||+++|+++|+++|.++ +.|..+ ..++.+|||||+|.+.++|.+||+ |+|..|.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~-~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSV-NINKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEE-EECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 34566899999999999999999999975 234444 357789999999999999999995 9999999
Q ss_pred ccccccccCCCCCCC-------C------------------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-
Q 004002 256 RRKLDIHFSIPKDNP-------S------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 309 (780)
Q Consensus 256 gr~I~V~~a~pk~~~-------s------------------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~- 309 (780)
|+.|.|......... . .......+|||+|||..+++++|+++|+.||.|+.+.+
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 999999753211100 0 00112358999999999999999999999999998865
Q ss_pred ----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 310 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 310 ----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
++.++|||||+|.+.++|.+||..|||..|.|++|.|.++..+
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 5678999999999999999999999999999999999998643
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.8e-21 Score=209.97 Aligned_cols=180 Identities=22% Similarity=0.343 Sum_probs=157.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccc-ccccccccC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFS 264 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~-gr~I~V~~a 264 (780)
..+.|||+.||.++.|+||.-+|++.|+|-+++ .+|.+||||||.|.+.++|++|++.||+.+|. |+.|.|+.+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 458999999999999999999999999999988 47999999999999999999999999999995 899999876
Q ss_pred CCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCC-eeEEEe------CCCcccEEEEEEcCHHHHHHHHHHhC-C
Q 004002 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLN-R 336 (780)
Q Consensus 265 ~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~-I~~v~~------~g~srG~aFV~F~~~e~A~~Ai~~Ln-G 336 (780)
. ..+.|||+|||+.+++|+|++.+++.++ |+.|.+ ..++||||||+|+++..|..|.++|- |
T Consensus 162 v----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 162 V----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred e----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 5 3468999999999999999999998854 444432 45789999999999999999999884 3
Q ss_pred -CccCCceEEEEecCCCchh---------hhHhhhhchhccHHHHHHHHhhhCC
Q 004002 337 -SDIAGKRIKLEPSRPGGAR---------RNLMLQLNQELEQDESRILQHQVGS 380 (780)
Q Consensus 337 -~~i~Gr~L~V~~a~~k~~r---------~~~l~ql~~~~~~~~~~~~~~~~Gs 380 (780)
.++.|..+.|+||.|...- ..+++++....+++.+...|.++|.
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred ceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 3778999999999986542 3468899999999999999998863
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=189.87 Aligned_cols=161 Identities=25% Similarity=0.345 Sum_probs=143.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
...||||+||+..++++.|.++|-+.|+|..++ ++.+.+|||||+|.++|+|+-|++.|+...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 458999999999999999999999999999987 467899999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEE----E--eCCCcccEEEEEEcCHHHHHHHHHHhCCCcc
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----R--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v----~--~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i 339 (780)
.. ........+|||+||++.+++..|.++|+.||.|... + .++.++++|||.|++.+.+.+||.+|||..+
T Consensus 88 ~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 88 AH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred cc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 21 1222234799999999999999999999999998763 2 4678999999999999999999999999999
Q ss_pred CCceEEEEecCCCch
Q 004002 340 AGKRIKLEPSRPGGA 354 (780)
Q Consensus 340 ~Gr~L~V~~a~~k~~ 354 (780)
..++|.|+++.++..
T Consensus 165 ~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDT 179 (203)
T ss_pred cCCceEEEEEEecCC
Confidence 999999999877653
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=1.3e-21 Score=201.36 Aligned_cols=148 Identities=28% Similarity=0.462 Sum_probs=137.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 272 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~ 272 (780)
-+|||+|||.++++.+|+.+|++||+|.+|.+ -|.||||..++...|+.||+.|++..|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999985 46799999999999999999999999999999999876553
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
....+|+|+||.+.++.+||+..|++||.|++|++. ++|+||.|+-.++|..||+.|+++++.|++++|..+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 345689999999999999999999999999999986 789999999999999999999999999999999988664
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.1e-21 Score=213.21 Aligned_cols=240 Identities=24% Similarity=0.395 Sum_probs=193.3
Q ss_pred eeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCcc----cccccCCCCccc-------C
Q 004002 117 FDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPNGAGTV-------A 182 (780)
Q Consensus 117 l~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~----~~~~l~n~~~k~-------~ 182 (780)
++|.+|+.+++..+++|+|+.+|.| .|..+..- .+|+ ++.|.+...|..+ ++..+.+..+.+ .
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 8999999999999999999999997 66666433 8888 9999987766522 222222221111 1
Q ss_pred CCCCCCC--CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccc
Q 004002 183 GEHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (780)
Q Consensus 183 g~~~~~e--~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g 256 (780)
...+..+ ..-++++|+|++.++++++|..+|..||.|.++. ..++++||+||.|.+.++|..|++.|++..+.+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 1111111 2346899999999999999999999999999987 457799999999999999999999999999999
Q ss_pred cccccccCCCCCCCC--------------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEE
Q 004002 257 RKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKF 318 (780)
Q Consensus 257 r~I~V~~a~pk~~~s--------------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aF 318 (780)
..+.|..+..+.... .......+|||.|++..++++.|+.+|+.||+|..+++ .+.++|+||
T Consensus 236 ~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gf 315 (369)
T KOG0123|consen 236 KELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGF 315 (369)
T ss_pred cceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEE
Confidence 999998776532211 11234579999999999999999999999999999875 577899999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchhhhHh
Q 004002 319 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLM 359 (780)
Q Consensus 319 V~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r~~~l 359 (780)
|+|...++|.+|+..+|+..+.++.|.|.+++.+..++..+
T Consensus 316 V~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~ 356 (369)
T KOG0123|consen 316 VEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARL 356 (369)
T ss_pred EEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhh
Confidence 99999999999999999999999999999998666555433
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=6.2e-20 Score=201.72 Aligned_cols=161 Identities=22% Similarity=0.375 Sum_probs=143.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
.||||++||+.++.++|.++|+.+|+|..|.+ ++.+||||||+|.-.+++++|++.+.+..+.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999872 3568999999999999999999999999999999999998765
Q ss_pred CCCCC----------C------------CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEE
Q 004002 268 DNPSD----------K------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEF 321 (780)
Q Consensus 268 ~~~s~----------~------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F 321 (780)
....+ + +.....|.|.|||+.+.+++|+.+|+.||.|.+|.+ .++-+|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43220 0 112458999999999999999999999999999987 344569999999
Q ss_pred cCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 322 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 322 ~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
.+..+|.+||+.+||..|.||+|-|.||-++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999998765
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.5e-19 Score=183.95 Aligned_cols=166 Identities=23% Similarity=0.431 Sum_probs=141.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcc-ccc--ccccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIHF 263 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~-l~g--r~I~V~~ 263 (780)
.+++|||+-|.+.-.|||++.+|..||.|++|. ..+.+||||||.|.+..+|..||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 569999999999999999999999999999987 367899999999999999999999999965 333 4566666
Q ss_pred CCCCCCCCC-----------------------------------------------------------------------
Q 004002 264 SIPKDNPSD----------------------------------------------------------------------- 272 (780)
Q Consensus 264 a~pk~~~s~----------------------------------------------------------------------- 272 (780)
++..+++.-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 443322100
Q ss_pred --------------------------------------------------------------------------------
Q 004002 273 -------------------------------------------------------------------------------- 272 (780)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (780)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -----------------------CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCH
Q 004002 273 -----------------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 324 (780)
Q Consensus 273 -----------------------~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~ 324 (780)
+....++|||.+||.+..+.||.++|-+||.|++.++ +..+|.||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0001158999999999999999999999999999864 778999999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEEecCCCchhh
Q 004002 325 RAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (780)
Q Consensus 325 e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r~ 356 (780)
.+|++||.+|||..|+-|+|+|...+|+.+.+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987654
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=9.1e-19 Score=184.37 Aligned_cols=157 Identities=22% Similarity=0.468 Sum_probs=139.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
|++||+.|.+++.|+.||..|..||+|.++. .++++||||||+|+-+|.|+.|++.|||..++||.|+|.. |.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--Ps 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--PS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--CC
Confidence 7999999999999999999999999999998 5899999999999999999999999999999999999974 33
Q ss_pred CCCCC---------CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 004002 268 DNPSD---------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 268 ~~~s~---------~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
..+.. +...-..|||..+.++++++||+..|+.||+|+.|.+ .+..||||||+|.+..+...||..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 22211 1123358999999999999999999999999999976 345689999999999999999999
Q ss_pred hCCCccCCceEEEEecCC
Q 004002 334 LNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~ 351 (780)
||=..++|.-|+|..+-.
T Consensus 272 MNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred cchhhcccceEecccccC
Confidence 999999999999976643
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=5.7e-18 Score=186.26 Aligned_cols=154 Identities=20% Similarity=0.308 Sum_probs=126.8
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~~ 186 (780)
.++|+|++|+.+++|.+|+++|+.+|.| .|..|..+...+++++|.|.+...|. .++...+.+..+++....+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 4789999999999999999999999997 66778888889999999999876664 3344445555444433322
Q ss_pred C-CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccc--cc
Q 004002 187 Y-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 258 (780)
Q Consensus 187 ~-~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g--r~ 258 (780)
. .....++|||+|||+++|+++|+++|++||+|..|+ .++++||||||+|.+.++|++||++|++..+.+ ++
T Consensus 187 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~ 266 (346)
T TIGR01659 187 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP 266 (346)
T ss_pred cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 2 223467899999999999999999999999998876 367889999999999999999999999998865 68
Q ss_pred cccccCCCC
Q 004002 259 LDIHFSIPK 267 (780)
Q Consensus 259 I~V~~a~pk 267 (780)
|.|.++...
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 888887654
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=4.7e-17 Score=164.04 Aligned_cols=161 Identities=27% Similarity=0.464 Sum_probs=141.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHH----HhhcCCCEEEEE--eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRA----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~----lF~~yG~I~sv~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
.+..||||+||+..+..++|+. +|++||.|..|. .+.+.||.|||.|.+.+.|..|+++|+|..+.|++++|+|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3556999999999999999988 999999999987 5789999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC----------------------------------------------CCCccceeecCCCCCCChhHHHHH
Q 004002 264 SIPKDNPSDK----------------------------------------------DLNQGTLVVFNLDPSVSNEDLRQI 297 (780)
Q Consensus 264 a~pk~~~s~~----------------------------------------------~~~~~~L~V~NLp~~vteedL~~~ 297 (780)
|..+.....+ ......|++.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 8654321110 112357999999999999999999
Q ss_pred hcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecC
Q 004002 298 FGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 350 (780)
Q Consensus 298 Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~ 350 (780)
|.+|..-++|+.....++.|||+|.+...|..|.+.|.|..|. ...++|.+++
T Consensus 167 f~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999987777899999999999999999999998886 7888888775
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.7e-17 Score=169.75 Aligned_cols=135 Identities=25% Similarity=0.426 Sum_probs=114.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
+..|||||+||+.+|||+-|..||.+.|.|.+|++- |+ .|+|.|+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCccc
Confidence 456999999999999999999999999999988732 22 466777655444
Q ss_pred CCCCCCC-ccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 004002 270 PSDKDLN-QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (780)
Q Consensus 270 ~s~~~~~-~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~ 343 (780)
.+....+ .--+||+.|...++.|+||+.|.+||+|.++++ ++++||||||.|-+.++|+.||..|||.+|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 4333333 346999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred EEEEecCCCch
Q 004002 344 IKLEPSRPGGA 354 (780)
Q Consensus 344 L~V~~a~~k~~ 354 (780)
|+-.||..|..
T Consensus 134 IRTNWATRKp~ 144 (321)
T KOG0148|consen 134 IRTNWATRKPS 144 (321)
T ss_pred eeccccccCcc
Confidence 99999977653
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=7.4e-17 Score=178.94 Aligned_cols=236 Identities=20% Similarity=0.252 Sum_probs=172.8
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC---cccccccCCCCccc-------
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTV------- 181 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~---~~~~~~l~n~~~k~------- 181 (780)
..+++-.+.....+-+++++|+..|.| .+..|..+.+.+|++++.|.+...-. .+.+-.+.+-+..+
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaek 259 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEK 259 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHH
Confidence 345555666666788999999999986 67788888899999999988653211 11111111111000
Q ss_pred --------CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHH
Q 004002 182 --------AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRA 248 (780)
Q Consensus 182 --------~g~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~ 248 (780)
.........+-+.|||+||..++++++|+.+|+.||.|+.|. .+|+++|||||+|.+.++|++|+..
T Consensus 260 nr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ 339 (549)
T KOG0147|consen 260 NRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQ 339 (549)
T ss_pred HHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHH
Confidence 000001122334499999999999999999999999999886 3899999999999999999999999
Q ss_pred ccCccccccccccccCCCCCCCCC--------------------------------------------------------
Q 004002 249 LQNKPLRRRKLDIHFSIPKDNPSD-------------------------------------------------------- 272 (780)
Q Consensus 249 Lng~~l~gr~I~V~~a~pk~~~s~-------------------------------------------------------- 272 (780)
|||..|.|+.|+|.....+-...+
T Consensus 340 lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~ 419 (549)
T KOG0147|consen 340 LNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAA 419 (549)
T ss_pred hccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHH
Confidence 999999999999865321100000
Q ss_pred ------------CC-------CCccceeecCC--CCCCC--------hhHHHHHhcccCCeeEEEeCCCcccEEEEEEcC
Q 004002 273 ------------KD-------LNQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323 (780)
Q Consensus 273 ------------~~-------~~~~~L~V~NL--p~~vt--------eedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~ 323 (780)
.. +...++.++|+ |.+.| .||+.+.+++||.|.-|.+...+-|+.||+|.+
T Consensus 420 ~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s 499 (549)
T KOG0147|consen 420 QFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPS 499 (549)
T ss_pred hhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCc
Confidence 00 11124455555 22222 477888889999999999988888999999999
Q ss_pred HHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 324 VRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 324 ~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
.++|..|+++|||.+|+|+.|...+-.
T Consensus 500 ~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 500 AEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHHHHhhhhhccceeEEEEee
Confidence 999999999999999999999998764
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.4e-16 Score=166.23 Aligned_cols=238 Identities=14% Similarity=0.257 Sum_probs=180.8
Q ss_pred cCCceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCC
Q 004002 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGE 184 (780)
Q Consensus 112 ~v~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~ 184 (780)
++|+++||+.+...+.|+.++..|..||.| ...-|+.+...++|+|+.+.-.+.+. .|++.-+-+..+++...
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 368999999999999999999999999997 56678889999999999888665543 33333333333333221
Q ss_pred CC------------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHH
Q 004002 185 HP------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMR 247 (780)
Q Consensus 185 ~~------------~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~ 247 (780)
.. ...+.-.+|||..+.++.+|+||+.+|+.||+|..|. ..+.+|||+||+|.+..+-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 11 0112347999999999999999999999999999998 356799999999999999999999
Q ss_pred HccCccccccccccccCCCCCCCC--------------------------------------------------------
Q 004002 248 ALQNKPLRRRKLDIHFSIPKDNPS-------------------------------------------------------- 271 (780)
Q Consensus 248 ~Lng~~l~gr~I~V~~a~pk~~~s-------------------------------------------------------- 271 (780)
.||-..|+|..|+|..+....+.-
T Consensus 271 sMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~ 350 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLG 350 (544)
T ss_pred hcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCC
Confidence 999999999988886632111000
Q ss_pred ----------------------------------------------------CC--------------------------
Q 004002 272 ----------------------------------------------------DK-------------------------- 273 (780)
Q Consensus 272 ----------------------------------------------------~~-------------------------- 273 (780)
++
T Consensus 351 ~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~ 430 (544)
T KOG0124|consen 351 TLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGS 430 (544)
T ss_pred CccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCc
Confidence 00
Q ss_pred ------------CCCccceeecCC--CCCCC---hhHHHHHhcccCCeeEEEeCCCccc---------EEEEEEcCHHHH
Q 004002 274 ------------DLNQGTLVVFNL--DPSVS---NEDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRAA 327 (780)
Q Consensus 274 ------------~~~~~~L~V~NL--p~~vt---eedL~~~Fs~yG~I~~v~~~g~srG---------~aFV~F~~~e~A 327 (780)
....+.+.++|+ |.+++ +.+|++.+++||.|..|-+.....+ .-||+|....++
T Consensus 431 sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~ 510 (544)
T KOG0124|consen 431 SARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASET 510 (544)
T ss_pred cHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHH
Confidence 000134667776 55565 5788999999999999866333222 269999999999
Q ss_pred HHHHHHhCCCccCCceEEEEec
Q 004002 328 EAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 328 ~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
.+|+++|+|+.|+|+++..+..
T Consensus 511 ~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 511 HRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHhhccceecCceeehhhh
Confidence 9999999999999999876543
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.66 E-value=1.6e-16 Score=170.75 Aligned_cols=162 Identities=19% Similarity=0.402 Sum_probs=141.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|||++|++++++|.|++.|.+||+|.+|. .+++++||+||+|.+.+...+++.. ....|.++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999987 4689999999999999999988884 5677899999999998
Q ss_pred CCCCCCCCCC--CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 266 PKDNPSDKDL--NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 266 pk~~~s~~~~--~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
++....+... ...++||++||.++++++|++.|.+||.|..+.+ +.+.++|+||.|++.+++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765443322 3568999999999999999999999998877643 56789999999999999999987 57789
Q ss_pred cCCceEEEEecCCCch
Q 004002 339 IAGKRIKLEPSRPGGA 354 (780)
Q Consensus 339 i~Gr~L~V~~a~~k~~ 354 (780)
|.|+.+.|+.|.|+..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999998763
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=3.9e-16 Score=173.23 Aligned_cols=163 Identities=23% Similarity=0.373 Sum_probs=139.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
.+...+++|+--|+..++..+|.++|+.+|.|..|+ .+++++|.|||+|.+.+....||. |.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 345668999999999999999999999999999987 467899999999999999999996 99999999999998
Q ss_pred cCCCCCCCCCC----------CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHH
Q 004002 263 FSIPKDNPSDK----------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAA 327 (780)
Q Consensus 263 ~a~pk~~~s~~----------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A 327 (780)
.....++.... ..+...|||+||...+++++|+.+|++||.|..|.+ +|.++|||||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 75433322110 111123999999999999999999999999999853 788999999999999999
Q ss_pred HHHHHHhCCCccCCceEEEEecCC
Q 004002 328 EAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 328 ~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
.+|+..|||.++.|+.|+|..-..
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHhccceecCceEEEEEeee
Confidence 999999999999999999976543
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=4.4e-15 Score=159.29 Aligned_cols=240 Identities=23% Similarity=0.317 Sum_probs=169.1
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE------------EEeccCccCcccceEEEeecCccccC--cccccc----cC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASGN--GLLHYS----VP 175 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i------------~V~~d~~esa~~g~~~v~~~~~~~a~--~~~~~~----l~ 175 (780)
..-+.+++||++++|.|+++++..||.+ +|++.+.+++..-...++-....... ...+|. +.
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lk 107 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELK 107 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHHHh
Confidence 3568999999999999999999999987 55555555443311111100000000 000000 00
Q ss_pred -----C----C------------CcccC--CCC---CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcc
Q 004002 176 -----N----G------------AGTVA--GEH---PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR 229 (780)
Q Consensus 176 -----n----~------------~~k~~--g~~---~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgksk 229 (780)
+ . +.... ... .....+--.++|.|+-..|+-+-|..+|++||.|..|.+..|.-
T Consensus 108 t~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn 187 (492)
T KOG1190|consen 108 TDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN 187 (492)
T ss_pred ccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc
Confidence 0 0 00000 010 11111224678999999999999999999999999999888888
Q ss_pred eE-EEEEEecHHHHHHHHHHccCcccc--ccccccccCCC----------CCC-------CCC-----------------
Q 004002 230 GF-VMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP----------KDN-------PSD----------------- 272 (780)
Q Consensus 230 G~-aFV~F~~~e~A~~Al~~Lng~~l~--gr~I~V~~a~p----------k~~-------~s~----------------- 272 (780)
|| |.|+|.+.+.|+.|..+|+|..|. .+.|+|.|+.- +.. +..
T Consensus 188 ~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~ 267 (492)
T KOG1190|consen 188 GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSV 267 (492)
T ss_pred chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcccccc
Confidence 87 999999999999999999999884 34666665321 100 000
Q ss_pred ---------------------C--CC--CccceeecCCCC-CCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHH
Q 004002 273 ---------------------K--DL--NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRA 326 (780)
Q Consensus 273 ---------------------~--~~--~~~~L~V~NLp~-~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~ 326 (780)
. .. ....|.|.||.. .+|.+.|..+|+.||+|..|++.-+++..|.|+|.|...
T Consensus 268 ~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~q 347 (492)
T KOG1190|consen 268 PAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQ 347 (492)
T ss_pred ccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhH
Confidence 0 00 024678888864 689999999999999999999876667889999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 327 AEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 327 A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
|+-|+..|+|.++.||+|+|.+++...
T Consensus 348 AqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 348 AQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred HHHHHHHhhcceecCceEEEeeccCcc
Confidence 999999999999999999999998654
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=9.3e-15 Score=142.52 Aligned_cols=149 Identities=22% Similarity=0.327 Sum_probs=126.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCC--CcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tg--kskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
..+++|||+|||.++-+.||.++|-+||.|..|.... ...+||||+|++..+|+.||..-+|..+.|..|+|+|+.--
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3568999999999999999999999999999987433 34579999999999999999999999999999999997644
Q ss_pred CCCCCC----------------------CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHH
Q 004002 268 DNPSDK----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 325 (780)
Q Consensus 268 ~~~s~~----------------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e 325 (780)
...+.. ...+-.|.|.+||.+-+++||+++..+-|.|....+.. .|++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccceeeeeeehh
Confidence 211110 11234799999999999999999999999998888753 468999999999
Q ss_pred HHHHHHHHhCCCccC
Q 004002 326 AAEAALKSLNRSDIA 340 (780)
Q Consensus 326 ~A~~Ai~~LnG~~i~ 340 (780)
+.+-|++.|....+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999877654
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2e-14 Score=163.41 Aligned_cols=191 Identities=25% Similarity=0.373 Sum_probs=153.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcce-EEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG-FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG-~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
+...+.++|+|||..+..++|..+|..||+|..+-.. .-| -+.|.|.+..+|.+|++.|.+..+...++++.|+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 3455889999999999999999999999999988432 334 4999999999999999999999999999888875211
Q ss_pred C-------C-------------CCC------------CC-------------CCc-cceeecCCCCCCChhHHHHHhccc
Q 004002 268 D-------N-------------PSD------------KD-------------LNQ-GTLVVFNLDPSVSNEDLRQIFGAY 301 (780)
Q Consensus 268 ~-------~-------------~s~------------~~-------------~~~-~~L~V~NLp~~vteedL~~~Fs~y 301 (780)
. . +.+ ++ ... .+|||.||+++.|.++|...|.++
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 0 0 000 00 011 249999999999999999999999
Q ss_pred CCeeEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC--------CCch-----hhhHhh
Q 004002 302 GEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR--------PGGA-----RRNLML 360 (780)
Q Consensus 302 G~I~~v~~~g--------~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~--------~k~~-----r~~~l~ 360 (780)
|.|.++.+.. .+.|||||+|++.++|++|++.|+|+.++|+.|.|+++. ++.. .+.+++
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeee
Confidence 9999997632 234999999999999999999999999999999999887 1111 133567
Q ss_pred hhchhccHHHHHHHHhhhCCC
Q 004002 361 QLNQELEQDESRILQHQVGSP 381 (780)
Q Consensus 361 ql~~~~~~~~~~~~~~~~Gsp 381 (780)
++.-+.+..+++.+|..+|.-
T Consensus 620 NipFeAt~rEVr~LF~aFGql 640 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQL 640 (725)
T ss_pred ccchHHHHHHHHHHHhcccce
Confidence 777788888999999888744
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=2.4e-12 Score=139.09 Aligned_cols=158 Identities=23% Similarity=0.383 Sum_probs=130.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhh-cCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 192 SRTLFVRNINSNVEDSELRALFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~-~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
.|.+||.|||+++...+|+++|. +.|+|+.|. ..+|.||||.|+|+++|.+++|++.||...+.||+|.|+--..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46799999999999999999996 789999886 5799999999999999999999999999999999998864211
Q ss_pred CCC------------------------------------------CCCCC------------------------------
Q 004002 267 KDN------------------------------------------PSDKD------------------------------ 274 (780)
Q Consensus 267 k~~------------------------------------------~s~~~------------------------------ 274 (780)
... +.+++
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 00000
Q ss_pred ---------CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 275 ---------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 275 ---------~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
.....+||.||+..+..+.|++.|.--|.|+.|.+ .+.++|++.|+|+.+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 01136899999999999999999999999998853 56789999999999999999999999876666
Q ss_pred ceEEEEec
Q 004002 342 KRIKLEPS 349 (780)
Q Consensus 342 r~L~V~~a 349 (780)
++..+...
T Consensus 284 ~~~~~Rl~ 291 (608)
T KOG4212|consen 284 RRMTVRLD 291 (608)
T ss_pred ccceeecc
Confidence 77666553
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=2.4e-14 Score=148.22 Aligned_cols=145 Identities=21% Similarity=0.339 Sum_probs=119.0
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE-EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 188 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i-~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~~~~ 188 (780)
+.++||++||...++.+++.+|..+|.| ++. ..+.+.||++.+...+. .+.+|.+-+..++++..+. +
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECD------IvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks-K 74 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECD------IVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS-K 74 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeee------eecccceEEeecccccHHHHhhcccceecceEEEEEeccc-c
Confidence 4679999999999999999999999987 222 22346666666665554 3556777766666654432 3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
...+++|+|+||.+.++.+||+..|++||.|.+|++ -++|+||.|.-.++|..|++.|++.++.|+++.|+.+..+-
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 567899999999999999999999999999999975 46899999999999999999999999999999999886543
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.49 E-value=9.7e-13 Score=141.50 Aligned_cols=161 Identities=26% Similarity=0.342 Sum_probs=136.0
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCC
Q 004002 192 SRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 270 (780)
Q Consensus 192 s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~ 270 (780)
+..|.|.||.. .||.+-|..+|.-||+|.+|++....+--|.|+|.+...|+-|+..|+|..|.|++|+|.+++-..-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 47888999875 58999999999999999999976666688999999999999999999999999999999987543211
Q ss_pred C------CC-------------------------CCCccceeecCCCCCCChhHHHHHhcccCCe-eEEEeCCCcccEEE
Q 004002 271 S------DK-------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKF 318 (780)
Q Consensus 271 s------~~-------------------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I-~~v~~~g~srG~aF 318 (780)
. +. -....+|++.|+|.+++||+|+.+|..-|.. +..+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 0 00 0123589999999999999999999988765 55567777888999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCC-ceEEEEecCCC
Q 004002 319 IEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRPG 352 (780)
Q Consensus 319 V~F~~~e~A~~Ai~~LnG~~i~G-r~L~V~~a~~k 352 (780)
+.+.++|+|..|+..++.+.+++ ..|+|+|++..
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999998875 59999998753
No 47
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=3e-14 Score=145.12 Aligned_cols=149 Identities=26% Similarity=0.433 Sum_probs=128.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC----
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD---- 268 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~---- 268 (780)
..+||++||+.+.+++|..+|..||.|..+... .||+||.|.+..+|..|+..|+++.|.+..+.|.|+....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 468999999999999999999999999988753 4899999999999999999999999999889999987421
Q ss_pred --CCC----------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004002 269 --NPS----------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 336 (780)
Q Consensus 269 --~~s----------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG 336 (780)
... ........|.|.++...+.+.+|.+.|+++|.+..... ..+++||+|...++|.+|+..|+|
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 100 01223357889999999999999999999999955554 578999999999999999999999
Q ss_pred CccCCceEEEE
Q 004002 337 SDIAGKRIKLE 347 (780)
Q Consensus 337 ~~i~Gr~L~V~ 347 (780)
..+.+++|.+.
T Consensus 156 ~~~~~~~l~~~ 166 (216)
T KOG0106|consen 156 KKLNGRRISVE 166 (216)
T ss_pred hhhcCceeeec
Confidence 99999999993
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.46 E-value=2.1e-13 Score=132.58 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=73.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+++|||+|||+++|+++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4568999999999999999999999999999987 26789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004002 265 IPKDN 269 (780)
Q Consensus 265 ~pk~~ 269 (780)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.44 E-value=3.4e-13 Score=131.04 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=72.0
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|+.|++ +++++|||||+|++.++|++||+.||+..|.|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3468999999999999999999999999999875 56789999999999999999999999999999999999997
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 653
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=7.1e-13 Score=132.86 Aligned_cols=150 Identities=21% Similarity=0.345 Sum_probs=115.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE--EeCCC----cceEEEEEEecHHHHHHHHHHccCcccc---cccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTL--YTACK----HRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 261 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv--~~tgk----skG~aFV~F~~~e~A~~Al~~Lng~~l~---gr~I~V 261 (780)
.-|||||.+||.++.-.||+.+|.+|-.-+.+ +.+.+ .+-+|||.|.+.++|..|+.+|||.++. +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35999999999999999999999988665554 33433 3479999999999999999999999985 667777
Q ss_pred ccCCCCCCCCC----------------------C-----------------------------C----------------
Q 004002 262 HFSIPKDNPSD----------------------K-----------------------------D---------------- 274 (780)
Q Consensus 262 ~~a~pk~~~s~----------------------~-----------------------------~---------------- 274 (780)
++++......+ . +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 77542211000 0 0
Q ss_pred ---------------CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCC-cccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 275 ---------------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 275 ---------------~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~-srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
....+|||.||...++|++|+++|+.|-.....++..+ ....|||+|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 00038999999999999999999999976666555322 23579999999999999999999876
Q ss_pred cC
Q 004002 339 IA 340 (780)
Q Consensus 339 i~ 340 (780)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 63
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=2.9e-12 Score=135.69 Aligned_cols=164 Identities=15% Similarity=0.251 Sum_probs=132.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EE----eCCCcceEEEEEEecHHHHHHHHHHccCccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s--------v~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g 256 (780)
...++.|||.|||.++|.+++.++|+++|-|.. |+ ..|+.||=|.|.|...++.+.|++.|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344577999999999999999999999998754 22 358899999999999999999999999999999
Q ss_pred cccccccCCCCCC-------------C---------------------CCCCCCccceeecCCCC----CCC-------h
Q 004002 257 RKLDIHFSIPKDN-------------P---------------------SDKDLNQGTLVVFNLDP----SVS-------N 291 (780)
Q Consensus 257 r~I~V~~a~pk~~-------------~---------------------s~~~~~~~~L~V~NLp~----~vt-------e 291 (780)
++|+|+.|.-... . ..+....++|.++|+=. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999987632100 0 00112236889998821 122 5
Q ss_pred hHHHHHhcccCCeeEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 292 EDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 292 edL~~~Fs~yG~I~~v~~-~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
++|++-.++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.++||+|..+...-+
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 677888999999999876 4677899999999999999999999999999999998766544
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.41 E-value=8e-12 Score=133.05 Aligned_cols=233 Identities=19% Similarity=0.267 Sum_probs=169.7
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE------------EEeccCccCcccceEEEeecCccccC-----cccccccCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASGN-----GLLHYSVPN 176 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i------------~V~~d~~esa~~g~~~v~~~~~~~a~-----~~~~~~l~n 176 (780)
.--+.|++|...+.|.++.+..+.+|.+ .|+|+..+++..+ ++|+....-. .+.+|....
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~---Vnfaa~n~i~i~gq~Al~NyStsq 107 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNC---VNFAADNQIYIAGQQALFNYSTSQ 107 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhh---eehhccCcccccCchhhcccchhh
Confidence 3458999999999999999999999997 3444443333222 2222111100 111111111
Q ss_pred CCcccCCCCCCCCCCCcEEEEe--CCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccc
Q 004002 177 GAGTVAGEHPYGEHPSRTLFVR--NINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (780)
Q Consensus 177 ~~~k~~g~~~~~e~~s~tLfVg--NLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l 254 (780)
++.........++..|.+. |--+.+|-+-|..+....|+|.+|.+..|.--.|+|+|++.+.|++|..+|||..|
T Consensus 108 ---~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 108 ---CIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred ---hhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccc
Confidence 1111112222344555555 44467999999999999999999988777666899999999999999999999988
Q ss_pred c--ccccccccCCCCCCCCCC-----------------------------------------------------------
Q 004002 255 R--RRKLDIHFSIPKDNPSDK----------------------------------------------------------- 273 (780)
Q Consensus 255 ~--gr~I~V~~a~pk~~~s~~----------------------------------------------------------- 273 (780)
. ..+|+|+|++|.+....+
T Consensus 185 YsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~ 264 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPP 264 (494)
T ss_pred cccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCC
Confidence 4 568999998775321000
Q ss_pred ---------C----------CCccceeecCCCCC-CChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 004002 274 ---------D----------LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 274 ---------~----------~~~~~L~V~NLp~~-vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
+ .....+.|.+|+.. +.-+.|..+|..||.|..|++...+.|.|.|++.|..+.++|+..
T Consensus 265 P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 265 PSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred CCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHH
Confidence 0 00136888999864 678999999999999999998777789999999999999999999
Q ss_pred hCCCccCCceEEEEecCCC
Q 004002 334 LNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~k 352 (780)
||+..+-|.+|.|.+++..
T Consensus 345 Lnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred hccCccccceEEEeecccc
Confidence 9999999999999998754
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.34 E-value=3.7e-11 Score=130.06 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=64.6
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
++|+|+|||.++|++.|++-|..||.|..+.+ .++++| .|+|.++++|++|+..|+|..+.|+.|+|.+.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 47999999999999999999999999999887 666665 99999999999999999999999999999863
No 54
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.32 E-value=1.2e-11 Score=136.30 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=125.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
.-.|.+++|||++|++||.++|+.++ |+.+. .+|+..|-|||+|.+.+++++|+++ +...+..|-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCcc
Confidence 35688899999999999999999885 55443 5699999999999999999999994 8888888988887665443
Q ss_pred CCC-------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004002 269 NPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (780)
Q Consensus 269 ~~s-------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~-v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG 336 (780)
... ........|-+.+||+.+|++||.++|+..-.|.. |.+ .+++.|-|||+|++.+.|++|+.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 211 01134568999999999999999999998754444 221 345778999999999999999985 77
Q ss_pred CccCCceEEEEecCCC
Q 004002 337 SDIAGKRIKLEPSRPG 352 (780)
Q Consensus 337 ~~i~Gr~L~V~~a~~k 352 (780)
..|.-+-|.|-.+...
T Consensus 167 e~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSRA 182 (510)
T ss_pred HhhccceEEeehhHHH
Confidence 7888888888776543
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.32 E-value=4.4e-12 Score=105.99 Aligned_cols=66 Identities=36% Similarity=0.645 Sum_probs=61.5
Q ss_pred eeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 280 L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
|||+|||.++|+++|+++|++||.|..+++ .+..+++|||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988875 345789999999999999999999999999999885
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.31 E-value=4.5e-12 Score=105.93 Aligned_cols=66 Identities=29% Similarity=0.610 Sum_probs=61.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccc
Q 004002 195 LFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (780)
Q Consensus 195 LfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~ 260 (780)
|||+|||+++|+++|+++|++||.|..+. ..++.+|+|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999998877 2467899999999999999999999999999998874
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=4e-12 Score=124.39 Aligned_cols=157 Identities=15% Similarity=0.240 Sum_probs=126.6
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCCCC--
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH-- 185 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~-- 185 (780)
..+||++|+..++|..++++|-+.|.| .+-.|.......|++|+.|...+.+. .++..++-++.+++....
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 579999999999999999999999986 55566677778899999988776654 333444555544443322
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE----E--eCCCcceEEEEEEecHHHHHHHHHHccCcccccccc
Q 004002 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----Y--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (780)
Q Consensus 186 ~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv----~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I 259 (780)
...-....+|||+||.++++|..|.+.|+.||.|... + .++..+|||||.|.+.+.+.+|+..++|..+..+++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 2233455899999999999999999999999988652 1 468899999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 004002 260 DIHFSIPKDNPS 271 (780)
Q Consensus 260 ~V~~a~pk~~~s 271 (780)
.|.++..++...
T Consensus 170 tv~ya~k~~~kg 181 (203)
T KOG0131|consen 170 TVSYAFKKDTKG 181 (203)
T ss_pred EEEEEEecCCCc
Confidence 999997665443
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=3.2e-11 Score=124.26 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=101.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
.++|||+|||.++|+++|+++|.+||.|..++ .+++++|||||.|.+.++|..|++.+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997776 3689999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe
Q 004002 267 ----KDNPS----------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (780)
Q Consensus 267 ----k~~~s----------------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~ 309 (780)
+.... ........+++.+++..++..++...|..+|.+..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 22111 01123358999999999999999999999999977765
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1e-11 Score=120.84 Aligned_cols=76 Identities=30% Similarity=0.488 Sum_probs=72.1
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
.++|||+||+..+++.||+.+|..||.|..|.+...+.|||||+|+++.+|+.|+..|+|+.|.|.+|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5689999999999999999999999999999998888999999999999999999999999999999999988654
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=7.9e-11 Score=132.98 Aligned_cols=163 Identities=17% Similarity=0.351 Sum_probs=126.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
....++||++||..+++.+++++...||++.... .++-++||||.+|.+.-....|+..|+|+.+.+++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999987654 45789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCC--------------------CCccceeecCC--CCCC-C-------hhHHHHHhcccCCeeEEEeCC---
Q 004002 265 IPKDNPSDKD--------------------LNQGTLVVFNL--DPSV-S-------NEDLRQIFGAYGEVKEIRETP--- 311 (780)
Q Consensus 265 ~pk~~~s~~~--------------------~~~~~L~V~NL--p~~v-t-------eedL~~~Fs~yG~I~~v~~~g--- 311 (780)
.+........ +....|.+.|+ +.++ + -|+++.-+++||.|..|.+..
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 6533211110 11123333333 1111 1 255667788999999997521
Q ss_pred -----CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 312 -----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 312 -----~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
-..|..||+|.+.+++++|..+|+|.+++|+.|...+-...
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 23567899999999999999999999999999999887643
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.24 E-value=3.2e-11 Score=130.17 Aligned_cols=191 Identities=15% Similarity=0.219 Sum_probs=136.5
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCcc-ccCccc--ccccCCCCcccCCCCC-
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSA-SGNGLL--HYSVPNGAGTVAGEHP- 186 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~-~a~~~~--~~~l~n~~~k~~g~~~- 186 (780)
..+++|++|.|+.+++.+++.|+++|.+ .|+.|+.....+++.+++|.+.. ....+. .+.+.+..+....+.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 3789999999999999999999999997 78888889999999999999543 322222 2223333222111111
Q ss_pred ------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 187 ------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 187 ------~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
.......++||+.||.+++++++++.|++||.|..+. .+.+.+||+||.|.+++++++++. ...+.|.
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~ 164 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN 164 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec
Confidence 1112345999999999999999999999999887765 468899999999999999999988 5888999
Q ss_pred ccccccccCCCCCCCCCCCCCc-cceeecCCCCCCChhHHHHHhcccCCee
Q 004002 256 RRKLDIHFSIPKDNPSDKDLNQ-GTLVVFNLDPSVSNEDLRQIFGAYGEVK 305 (780)
Q Consensus 256 gr~I~V~~a~pk~~~s~~~~~~-~~L~V~NLp~~vteedL~~~Fs~yG~I~ 305 (780)
++++.|+.|.|++......... ...+..++....+.-.|...|.-|+.+.
T Consensus 165 gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred CceeeEeeccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 9999999999887543221111 1112223444444444555555555543
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.2e-11 Score=128.32 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=80.3
Q ss_pred cCccccccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHH
Q 004002 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRA 326 (780)
Q Consensus 250 ng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~ 326 (780)
++-...|..+.+..+.. ++.....+.|+|+|||+...|.||+.+|.+||.|.+|.| ...+||||||+|++.++
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 44455566665553322 122223468999999999999999999999999999875 45679999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCC
Q 004002 327 AEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 327 A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
|++|-.+|||..|.||+|+|..+..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999988653
No 63
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.21 E-value=3.2e-10 Score=125.31 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=156.3
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcEEEeccCccCcccceEEEeecCccccCcc---cccccCCC----------Cccc
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNG----------AGTV 181 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i~V~~d~~esa~~g~~~v~~~~~~~a~~~---~~~~l~n~----------~~k~ 181 (780)
-.+-+++|||+++++|+.++|++++--.|.+-..+++..|-++|.+...+..+.. ..-.+.+. ....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 4577899999999999999999998656666666688888888887765433311 11111111 0011
Q ss_pred CCCC--CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE-----EEeCCCcceEEEEEEecHHHHHHHHHHccCccc
Q 004002 182 AGEH--PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-----LYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (780)
Q Consensus 182 ~g~~--~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s-----v~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l 254 (780)
...+ +........|.+++||+.||++||.++|+..-.|.. ....++..|-|||+|.+.+.|++|+.. +...|
T Consensus 91 ~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i 169 (510)
T KOG4211|consen 91 VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI 169 (510)
T ss_pred cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh
Confidence 1111 111235578999999999999999999996533332 113577889999999999999999985 66666
Q ss_pred cccccccccCC-----------------C------CCCCC----------------------------------------
Q 004002 255 RRRKLDIHFSI-----------------P------KDNPS---------------------------------------- 271 (780)
Q Consensus 255 ~gr~I~V~~a~-----------------p------k~~~s---------------------------------------- 271 (780)
..|-|.|-.+. | ...+.
T Consensus 170 GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~g 249 (510)
T KOG4211|consen 170 GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFG 249 (510)
T ss_pred ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccc
Confidence 66555543210 0 00000
Q ss_pred ----CCCC---------------------Cc-cceeecCCCCCCChhHHHHHhcccCCe---eEEEeCCCcccEEEEEEc
Q 004002 272 ----DKDL---------------------NQ-GTLVVFNLDPSVSNEDLRQIFGAYGEV---KEIRETPHKRHHKFIEFY 322 (780)
Q Consensus 272 ----~~~~---------------------~~-~~L~V~NLp~~vteedL~~~Fs~yG~I---~~v~~~g~srG~aFV~F~ 322 (780)
.++. .. ..++..+||.+.++.++..+|+..-.+ .+|..+++..|-|+|+|.
T Consensus 250 s~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~ 329 (510)
T KOG4211|consen 250 SYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFA 329 (510)
T ss_pred ccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecc
Confidence 0000 00 257788999999999999999976443 223347788899999999
Q ss_pred CHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 323 DVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 323 ~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
+.++|..|+.+ ++.-+..+-|.+-.
T Consensus 330 t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 330 TGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred cchhhHhhhcc-CCcccCcceeeecc
Confidence 99999999874 66666666666643
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=7.6e-11 Score=120.16 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=73.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
+..++|.|.||+.+++|++|+++|.+||.|..++ .+|.+||||||.|.+.++|++||+.|+|.-+..--|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3568999999999999999999999999999987 58999999999999999999999999999999999999999
Q ss_pred CCC
Q 004002 265 IPK 267 (780)
Q Consensus 265 ~pk 267 (780)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 885
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.5e-11 Score=117.23 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=72.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
-.++|||+||+..+++.||..+|..||.|.+|-+.....|||||+|++..+|+.|+..|+|+.|.|..|.|+.+.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 35899999999999999999999999999999988889999999999999999999999999999999999987643
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=9.6e-11 Score=105.02 Aligned_cols=79 Identities=29% Similarity=0.499 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
...+.|||+|||.++|.|+..++|.+||.|+.|++ +...+|-|||.|+++.+|++|++.|.|..+.++.+.|.|-.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45689999999999999999999999999999994 5568999999999999999999999999999999999987664
Q ss_pred C
Q 004002 268 D 268 (780)
Q Consensus 268 ~ 268 (780)
+
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=9e-11 Score=119.64 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.7
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...+|-|.||+.++++++|+++|.+||.|..|. .+|.+||||||.|.++++|++||..|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 446899999999999999999999999999985 489999999999999999999999999999999999999999
Q ss_pred CC
Q 004002 351 PG 352 (780)
Q Consensus 351 ~k 352 (780)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=6.9e-11 Score=120.12 Aligned_cols=76 Identities=22% Similarity=0.421 Sum_probs=66.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
+..-++|||++|+|++..|+|++.|++||+|++.. .++++||||||+|.|.++|.+|++. .+-.|.||+..|..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34458999999999999999999999999998865 4799999999999999999999995 45668899888876
Q ss_pred CC
Q 004002 264 SI 265 (780)
Q Consensus 264 a~ 265 (780)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 53
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=121.54 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=67.9
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~--g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
.++|||+||++.+|+++|+++|+.||.|+.|++. +..+|||||+|.+.++|+.||. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 4689999999999999999999999999999873 3357999999999999999996 999999999999999864
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=4.8e-10 Score=100.62 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=73.9
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
..-|||.|||+++|.|+..++|++||.|..||+ +...+|.|||.|++..+|.+|++.|+|..+.++-|.|-+-++..+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 467999999999999999999999999999997 556689999999999999999999999999999999999888765
Q ss_pred hhh
Q 004002 355 RRN 357 (780)
Q Consensus 355 r~~ 357 (780)
.+.
T Consensus 98 ~~~ 100 (124)
T KOG0114|consen 98 FKL 100 (124)
T ss_pred HHH
Confidence 443
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=7.2e-11 Score=109.54 Aligned_cols=75 Identities=27% Similarity=0.487 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..++||||+||+..++||+|.++|+++|+|..|. -+....|||||+|.+.++|+.|++-++|..|..++|.|.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4679999999999999999999999999999986 24557899999999999999999999999999999999874
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=1.8e-10 Score=120.63 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
.++|||+|||+.+|+++|+++|+.||+|.+|++ .+..+|||||+|.+.++|+.||. |+|..|.|+.|.|.++..-.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 479999999999999999999999999999984 33468999999999999999996 99999999999999876433
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.11 E-value=2.1e-10 Score=96.74 Aligned_cols=66 Identities=35% Similarity=0.639 Sum_probs=58.8
Q ss_pred eeecCCCCCCChhHHHHHhcccCCeeEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 280 L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~----g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
|||+|||.++++++|+++|+.||.|..+++. +..+++|||+|.+.++|.+|++.++|..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998763 33579999999999999999999999999999885
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.11 E-value=1.7e-10 Score=97.35 Aligned_cols=66 Identities=23% Similarity=0.548 Sum_probs=58.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccc
Q 004002 195 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (780)
Q Consensus 195 LfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~ 260 (780)
|||+|||+++++++|+++|+.||.|..++. .++.+|+|||+|.+.++|++|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999988872 256799999999999999999999998999998864
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.6e-10 Score=121.95 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
....++|+|.|||...-|-||+.+|++||+|.+|.+ ...+||||||+|++.++|++|-++|+|..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 344589999999999999999999999999998872 45599999999999999999999999999999999999887
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
++
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=3.6e-10 Score=93.15 Aligned_cols=69 Identities=32% Similarity=0.644 Sum_probs=63.0
Q ss_pred ceeecCCCCCCChhHHHHHhcccCCeeEEEeCC---CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g---~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
+|+|+|||..+++++|+++|++||.|..+++.. ..+++|||+|.+.++|++|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999987643 347999999999999999999999999999999874
No 77
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=120.45 Aligned_cols=164 Identities=12% Similarity=0.200 Sum_probs=119.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhc---C--C--CEEEEE-eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQ---Y--G--DIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~---y--G--~I~sv~-~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
.-.|.+++||.++++.++.++|.. . | .|.=|+ ..|+..|-|||.|..+++|+.|+.+ +...|+-|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 346778899999999999999962 2 2 122233 3688999999999999999999996 55555555554433
Q ss_pred CCCCC---------------------------CCCCCCCCccceeecCCCCCCChhHHHHHhcccCC-eeE--EE----e
Q 004002 264 SIPKD---------------------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKE--IR----E 309 (780)
Q Consensus 264 a~pk~---------------------------~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~-I~~--v~----~ 309 (780)
+...+ ..........+|.+++||+..+.|+|..+|..|-. |.. |. -
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 21100 00011223568999999999999999999998743 222 32 2
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchhh
Q 004002 310 TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (780)
Q Consensus 310 ~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r~ 356 (780)
.|+..|.|||+|.+.++|.+|..+-+.+...++-|+|-.+.-..-..
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 56778999999999999999999988888889999998876544333
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.08 E-value=2.7e-10 Score=124.93 Aligned_cols=86 Identities=26% Similarity=0.359 Sum_probs=74.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCH--HHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDV--RAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~--e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
.....|||+||.+++++++|+.+|+.||.|..|.+ ++ ||||||+|.+. .++.+||..|||.++.|+.|+|..|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 34468999999999999999999999999999865 44 89999999987 7899999999999999999999999
Q ss_pred CCCchhhhHhhhhchhcc
Q 004002 350 RPGGARRNLMLQLNQELE 367 (780)
Q Consensus 350 ~~k~~r~~~l~ql~~~~~ 367 (780)
++. ++.+|.++.+
T Consensus 86 KP~-----YLeRLkrERe 98 (759)
T PLN03213 86 KEH-----YLARLKREWE 98 (759)
T ss_pred cHH-----HHHHHHHHHH
Confidence 875 4555544443
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=2.4e-10 Score=106.16 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=69.9
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...+|||+||...++||+|.++|+++|+|+.|- .+....||+||+|...++|+.|++-++|+.++.+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 457999999999999999999999999999984 356678999999999999999999999999999999999875
Q ss_pred C
Q 004002 351 P 351 (780)
Q Consensus 351 ~ 351 (780)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 80
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=7.2e-10 Score=89.90 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=51.4
Q ss_pred HHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 294 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 294 L~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
|+++|++||+|+.+.+....+++|||+|.+.++|++|++.|||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999986665799999999999999999999999999999999986
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.8e-10 Score=127.46 Aligned_cols=162 Identities=27% Similarity=0.404 Sum_probs=129.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
..+.++|+|-|||.+|++++|+.+|+.||+|+.++.+.-.+|.+||+|.|..+|++|+++|++..+.|+.|+........
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 45679999999999999999999999999999999888899999999999999999999999999999988833221111
Q ss_pred CC------------------CCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHH
Q 004002 269 NP------------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 330 (780)
Q Consensus 269 ~~------------------s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~A 330 (780)
.- ....-....++.- |++..+..-++.+|+.+|.+.. +.++..+..-|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 00 0000112334433 9999988889999999999998 88877777889999999999777
Q ss_pred HHHhCCCccCCceEEEEecCCCc
Q 004002 331 LKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 331 i~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
...+ |..+.++.....++.+..
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred ccCC-ceecCCCCceEEecCCCc
Confidence 7744 777788887778887744
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=1.1e-09 Score=90.15 Aligned_cols=69 Identities=30% Similarity=0.580 Sum_probs=62.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t---gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
+|+|+|||..+++++|+++|++||+|..++.. +.++|+|||+|.+.++|++|++.+++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999888732 4568999999999999999999999999999888763
No 83
>smart00360 RRM RNA recognition motif.
Probab=98.98 E-value=1.6e-09 Score=88.87 Aligned_cols=66 Identities=35% Similarity=0.662 Sum_probs=59.9
Q ss_pred ecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 282 VFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 282 V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
|+|||..+++++|+++|++||.|..+++ ++.++++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999875 24457899999999999999999999999999999874
No 84
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=6.3e-10 Score=109.12 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=70.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCC--CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g--~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
..+.|||+|||.++.+.||+++|.+||.|.+|.+.. ....||||+|++..+|+.||..-+|..++|++|+|++++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 457899999999999999999999999999997643 335799999999999999999999999999999999998654
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=98.98 E-value=9.3e-10 Score=120.77 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecH--HHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~--e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
...+||||||++++|+++|+.+|..||.|.+|. .+| ||||||+|.+. .++.+||..|+|..+.|+.|+|..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 457999999999999999999999999999887 355 99999999987 78999999999999999999999886
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
|.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 63
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.1e-09 Score=114.39 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
..++-+||||.-|+.+++|.+|+..|+.||+|..|+ ++++++|||||+|+++.+...|.+..+|.+|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346889999999999999999999999999999886 689999999999999999999999999999999999998
Q ss_pred cCC
Q 004002 263 FSI 265 (780)
Q Consensus 263 ~a~ 265 (780)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.97 E-value=8e-10 Score=110.16 Aligned_cols=75 Identities=28% Similarity=0.523 Sum_probs=70.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.-..|.|-||..-++.++|+.+|++||.|-+|+ .+..++|||||.|.+..+|+.|+++|+|.+|.|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 447899999999999999999999999999998 478899999999999999999999999999999999998875
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=7e-10 Score=112.88 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
+..-++|||+||+..++.|+|++.|++||+|+++.+ ++++||||||+|.|.++|.+|.+. -.-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 334578999999999999999999999999999754 789999999999999999999985 34689999999988
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
|.-+.
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 86543
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=3.7e-09 Score=87.50 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=63.8
Q ss_pred ceeecCCCCCCChhHHHHHhcccCCeeEEEeCCC----cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~----srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999876433 378999999999999999999999999999999864
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.94 E-value=2.5e-09 Score=110.48 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=66.9
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
..+|||+||++.+|+++|+++|+.||+|..|++ .+..+++|||+|.+.++|+.|+. |+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 358999999999999999999999999999986 34556899999999999999995 999999999999987653
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=3.1e-09 Score=111.15 Aligned_cols=91 Identities=31% Similarity=0.418 Sum_probs=79.8
Q ss_pred cCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 004002 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (780)
Q Consensus 263 ~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~ 337 (780)
...|..++......-+||||+-|+.+++|.+|+..|+.||.|+.|+ ++++++|||||+|++..+..+|.+...|.
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3455555555556678999999999999999999999999999986 58999999999999999999999999999
Q ss_pred ccCCceEEEEecCCCc
Q 004002 338 DIAGKRIKLEPSRPGG 353 (780)
Q Consensus 338 ~i~Gr~L~V~~a~~k~ 353 (780)
.|+|+.|.|.+-+-..
T Consensus 167 ~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 167 KIDGRRILVDVERGRT 182 (335)
T ss_pred eecCcEEEEEeccccc
Confidence 9999999998876543
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.93 E-value=1.5e-08 Score=108.39 Aligned_cols=168 Identities=20% Similarity=0.318 Sum_probs=130.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHc--cCccccccccccc
Q 004002 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKLDIH 262 (780)
Q Consensus 185 ~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~L--ng~~l~gr~I~V~ 262 (780)
.+....++-.+.|++|-..++|.+|.+..+.||.|..+. ....+..|.|+|++++.|++++.-- +...+.|+..-+.
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt-~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVT-CMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEE-eccccceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 344455678999999999999999999999999998775 3556778999999999999988632 3344667777777
Q ss_pred cCCCCCCCC---CCCCCcccee--ecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 004002 263 FSIPKDNPS---DKDLNQGTLV--VFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (780)
Q Consensus 263 ~a~pk~~~s---~~~~~~~~L~--V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~ 337 (780)
|+..+.-.. +.....+.|. |-|--+.+|-+-|.++.-+.|.|..|.+..+.--.|.|||++.+.|++|..+|||.
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccc
Confidence 764332111 1111223343 44555688999999999999999999887665446999999999999999999999
Q ss_pred ccC-C-ceEEEEecCCCc
Q 004002 338 DIA-G-KRIKLEPSRPGG 353 (780)
Q Consensus 338 ~i~-G-r~L~V~~a~~k~ 353 (780)
.|. | +.|+|++|+|..
T Consensus 183 DIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred cccccceeEEEEecCcce
Confidence 885 4 789999999875
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.2e-10 Score=111.64 Aligned_cols=79 Identities=27% Similarity=0.519 Sum_probs=74.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|||++|..+|+|.-|...|-+||+|..|. .+.++||||||+|...|+|..||..|++..|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 468999999999999999999999999999987 478999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004002 266 PKDN 269 (780)
Q Consensus 266 pk~~ 269 (780)
|.+.
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 8654
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=9.9e-10 Score=109.50 Aligned_cols=76 Identities=33% Similarity=0.543 Sum_probs=70.7
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
...|-|-||-+.++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..++|+.|.|.+|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999965 778999999999999999999999999999999999988864
Q ss_pred C
Q 004002 352 G 352 (780)
Q Consensus 352 k 352 (780)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 4
No 95
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=2.3e-09 Score=87.84 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=59.6
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 197 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 197 VgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
|+|||..+++++|+.+|++||.|..+.. +++++|+|||+|.+.++|.+|++.+++..+.|+++.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999988862 35678999999999999999999999999999888763
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.1e-09 Score=109.81 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=66.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+|||+||++.+|+++|+++|+.||+|.+|+ ..++.+|+|||+|+++++|+.|+. |+|..|.+++|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 47999999999999999999999999999988 356678999999999999999996 9999999999998654
No 97
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.9e-09 Score=108.61 Aligned_cols=97 Identities=20% Similarity=0.354 Sum_probs=82.5
Q ss_pred ccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHH
Q 004002 256 RRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAAL 331 (780)
Q Consensus 256 gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai 331 (780)
+|+|.|+.+..... ...+++|||+-|.+.-.|||++.+|.+||+|.+|.+ ++.+||++||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesr----g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESR----GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccC----CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 47788876654332 235679999999999999999999999999999976 6778999999999999999999
Q ss_pred HHhCCC-ccCC--ceEEEEecCCCchhh
Q 004002 332 KSLNRS-DIAG--KRIKLEPSRPGGARR 356 (780)
Q Consensus 332 ~~LnG~-~i~G--r~L~V~~a~~k~~r~ 356 (780)
..|+|. .+.| ..|.|++++..++|.
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHH
Confidence 999996 5666 789999999887764
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-09 Score=109.56 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=74.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||++|-.+++|.-|...|-+||.|+.|.+ ..+.||||||+|+..|+|.+||..||+.++-||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999974 67789999999999999999999999999999999999999
Q ss_pred CCchh
Q 004002 351 PGGAR 355 (780)
Q Consensus 351 ~k~~r 355 (780)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86543
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=6.9e-09 Score=85.88 Aligned_cols=70 Identities=34% Similarity=0.660 Sum_probs=62.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC----CCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t----gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
+|+|+|||..+++++|+++|+.||+|..+... .+.+|+|||+|.+.++|..|++.+++..+.++++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999888732 24589999999999999999999999999999988764
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.85 E-value=7.3e-09 Score=106.70 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=70.2
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
..+|||+|||.++++++|+++|.+||.|..+++ ++.++|+|||+|.+.++|..|++.++|..+.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988754 578899999999999999999999999999999999999764
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.83 E-value=4.4e-09 Score=85.23 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=50.2
Q ss_pred HHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 209 LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 209 Lr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
|+++|++||+|..+....+.+++|||+|.+.++|++|++.|+|..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999864444799999999999999999999999999999999885
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=4.5e-09 Score=98.46 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=73.2
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
+......|||.++....|+++|.+.|..||+|+.+.+ ++-.+|||+|+|++.++|++||.+|||..+-|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445678999999999999999999999999999965 67789999999999999999999999999999999999
Q ss_pred ecCCCc
Q 004002 348 PSRPGG 353 (780)
Q Consensus 348 ~a~~k~ 353 (780)
|+--++
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 886443
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.2e-08 Score=111.78 Aligned_cols=144 Identities=18% Similarity=0.302 Sum_probs=104.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-------eCCCcce---EEEEEEecHHHHHHHHHHccC----ccc-
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------TACKHRG---FVMISYYDIRAARTAMRALQN----KPL- 254 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-------~tgkskG---~aFV~F~~~e~A~~Al~~Lng----~~l- 254 (780)
.-+++|||++||++++|++|...|.+||.+..=- .....+| |+|+.|+++...+.-+.++.- ..|
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 4568999999999999999999999999875311 1123566 999999999998887776432 111
Q ss_pred ------cccccccccCCCCC-----CCCCCCCCccceeecCCCCCCChhHHHHHhc-ccCCeeEEEeC-----CCcccEE
Q 004002 255 ------RRRKLDIHFSIPKD-----NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRET-----PHKRHHK 317 (780)
Q Consensus 255 ------~gr~I~V~~a~pk~-----~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs-~yG~I~~v~~~-----g~srG~a 317 (780)
+.+.+.|..-...+ ..+..-...+||||++||..++.++|-.||. -||.|..+-|+ +-.+|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 11222221111000 0111223457999999999999999999999 79999988653 3468999
Q ss_pred EEEEcCHHHHHHHHHH
Q 004002 318 FIEFYDVRAAEAALKS 333 (780)
Q Consensus 318 FV~F~~~e~A~~Ai~~ 333 (780)
-|.|.+..+-.+||.+
T Consensus 417 RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISA 432 (520)
T ss_pred eeeecccHHHHHHHhh
Confidence 9999999999999984
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.80 E-value=5.5e-09 Score=117.54 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=72.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
+.+||||||++++|++|..+|+..|.|.+++ .+|+.+||||++|.+.++|++|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999987 68999999999999999999999999999999999999998654
Q ss_pred CC
Q 004002 268 DN 269 (780)
Q Consensus 268 ~~ 269 (780)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.78 E-value=1.2e-08 Score=114.74 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=73.9
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
..+||+|+|+++++++|..+|+..|.|.++++ +|+.+||||++|.+.++|++|++.|||.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999874 8899999999999999999999999999999999999999876
Q ss_pred chhh
Q 004002 353 GARR 356 (780)
Q Consensus 353 ~~r~ 356 (780)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6543
No 106
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=8.5e-10 Score=108.06 Aligned_cols=75 Identities=20% Similarity=0.435 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.+.-|||+|||.+.||.+|..+|++||+|..|. .||+++||||+.|++..+...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 567899999999999999999999999999876 589999999999999999999999999999999999997654
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=8.9e-09 Score=96.54 Aligned_cols=81 Identities=17% Similarity=0.444 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 187 ~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
.+....-.|||.++....||++|.+.|..||+|..+. .+|-.||||+|+|.+.++|++|+.++||..|-+++|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 3344457899999999999999999999999999886 57889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 004002 262 HFSIPK 267 (780)
Q Consensus 262 ~~a~pk 267 (780)
.|+.-+
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 997544
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.3e-09 Score=106.74 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=69.8
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....-|||+|||+++||.||.-.|++||+|+.|.+ ||+++||||.+|+|..+..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35568999999999999999999999999999864 8999999999999999999999999999999999999744
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.75 E-value=2.2e-08 Score=85.28 Aligned_cols=57 Identities=33% Similarity=0.513 Sum_probs=50.9
Q ss_pred hhHHHHHhc----ccCCeeEEE---e---C--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 291 NEDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 291 eedL~~~Fs----~yG~I~~v~---~---~--g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
+++|+++|+ +||.|..|. + + +.++|+|||+|.+.++|.+|++.|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999998 999999884 2 2 6789999999999999999999999999999999863
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=1.2e-08 Score=119.28 Aligned_cols=157 Identities=21% Similarity=0.372 Sum_probs=136.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..+++||++||+.++++.+|+..|..+|.|.+|.+ .+.-.-||||.|.+...+-.|+.++.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34689999999999999999999999999999873 23445699999999999999999999999987777777765
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCC--ce
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KR 343 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G--r~ 343 (780)
++ ....+.++|++|...+....|.+.|..||.|..|.+. +..-|++|.|++...|++|.+.|.|..++| ++
T Consensus 450 ~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 450 PK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred cc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 52 2345679999999999999999999999999999874 345699999999999999999999999987 78
Q ss_pred EEEEecCCCc
Q 004002 344 IKLEPSRPGG 353 (780)
Q Consensus 344 L~V~~a~~k~ 353 (780)
|.|.++.+..
T Consensus 523 ~rvdla~~~~ 532 (975)
T KOG0112|consen 523 LRVDLASPPG 532 (975)
T ss_pred cccccccCCC
Confidence 9999998765
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=3.8e-08 Score=113.64 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
++||||+.|+..++|.||+.+|+.||+|.+|.. ...+|||||.+...++|.+|+.+|.+..+.++.|+|.|+.-+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 589999999999999999999999999999975 45899999999999999999999999999999999999976543
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.63 E-value=5.7e-08 Score=112.25 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=74.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchh
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r 355 (780)
..+||||++|+..+++.||..+|+.||+|.+|.+. .+++||||.+..+.+|++|+.+|+...+.++.|+|.|+..++.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 34799999999999999999999999999999986 46899999999999999999999999999999999999988876
Q ss_pred h
Q 004002 356 R 356 (780)
Q Consensus 356 ~ 356 (780)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=6.2e-08 Score=109.85 Aligned_cols=165 Identities=19% Similarity=0.347 Sum_probs=131.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC-----------C-CEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~y-----------G-~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr 257 (780)
...+.++|+++|..+++++.-.+|..- | .+..+. .+..+.|||++|.+.++|..|+. +++..+.|.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~-~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~ 250 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQ-LNLEKNFAFIEFRSISEATEAMA-LDGIIFEGR 250 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeee-ecccccceeEEecCCCchhhhhc-ccchhhCCC
Confidence 345799999999999999999988743 3 255554 46788999999999999999998 788888887
Q ss_pred ccccccCCCCCC-------------------CCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCc
Q 004002 258 KLDIHFSIPKDN-------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHK 313 (780)
Q Consensus 258 ~I~V~~a~pk~~-------------------~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~s 313 (780)
++.+..-..... ..........++|++||..+++++++++.+.||.++..++ ++.+
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s 330 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS 330 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc
Confidence 776643111000 0011122358999999999999999999999999877642 5788
Q ss_pred ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchhh
Q 004002 314 RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (780)
Q Consensus 314 rG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r~ 356 (780)
+||||.+|.+......|+..|||..+.+++|.|..|..+....
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 9999999999999999999999999999999999998776443
No 114
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.60 E-value=7.3e-08 Score=98.09 Aligned_cols=77 Identities=29% Similarity=0.588 Sum_probs=71.8
Q ss_pred cceeecCCCCCCChhHHHH----HhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 278 GTLVVFNLDPSVSNEDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~----~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
.||||.||+..+..++|+. +|++||+|.+|.. +++.||-|||.|++.+.|..|+++|+|..+-|+.+++.+|+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999998 9999999999875 677899999999999999999999999999999999999988
Q ss_pred Cch
Q 004002 352 GGA 354 (780)
Q Consensus 352 k~~ 354 (780)
+..
T Consensus 90 ~sd 92 (221)
T KOG4206|consen 90 DSD 92 (221)
T ss_pred ccc
Confidence 754
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.56 E-value=1.1e-07 Score=80.97 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=50.0
Q ss_pred HHHHHHHhh----cCCCEEEEE------eC--CCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 206 DSELRALFE----QYGDIRTLY------TA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 206 eeeLr~lF~----~yG~I~sv~------~t--gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
+++|+++|+ +||.|.++. .+ ++++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999998873 12 778999999999999999999999999999999875
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=2.3e-07 Score=99.14 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=71.3
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHc-cCccccccccccc
Q 004002 184 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIH 262 (780)
Q Consensus 184 ~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~L-ng~~l~gr~I~V~ 262 (780)
..+..+...++|||++|-..++|.+|++.|.+||+|++++.. ..+++|||+|.+.++|+.|..++ +...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 445566677999999999999999999999999999999853 35679999999999999998875 4456799999999
Q ss_pred cCCCC
Q 004002 263 FSIPK 267 (780)
Q Consensus 263 ~a~pk 267 (780)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 117
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.43 E-value=2.6e-07 Score=99.59 Aligned_cols=163 Identities=20% Similarity=0.288 Sum_probs=129.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..+++|++++...+.+.++..++..+|.+..+. ....++|++.|.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 468999999999999999999999999766554 457799999999999999999999655456655554443332
Q ss_pred CCCCCC-----C-CCCCcccee-ecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 004002 266 PKDNPS-----D-KDLNQGTLV-VFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 266 pk~~~s-----~-~~~~~~~L~-V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
...... . ......+++ |++|+..+++++|+..|..+|.|..+++ ++..+++|+|+|.+...+..|+..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 222110 0 111223455 9999999999999999999999999975 567789999999999999999987
Q ss_pred hCCCccCCceEEEEecCCCch
Q 004002 334 LNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
....+.++.+.+....+...
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred -ccCcccCcccccccCCCCcc
Confidence 88999999999999887653
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.42 E-value=1.8e-07 Score=96.38 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=115.0
Q ss_pred EEEEeCCCCCCCHHH-H--HHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 194 TLFVRNINSNVEDSE-L--RALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 194 tLfVgNLp~~vteee-L--r~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
.+++.++-.++..+- | ...|+.|-.+...+ ..++-++++|+.|....+-.++-..-+++.++-+.+++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 344555555554443 2 45566554433222 3567889999999988888888777677777766666654433
Q ss_pred CCCCC--CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEE-----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc
Q 004002 267 KDNPS--DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (780)
Q Consensus 267 k~~~s--~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v-----~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i 339 (780)
-.+++ +-+...-.||.+.|..+++++-|-..|.+|-.-... +-+++++||+||.|.+..++..|++.|+|+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 33332 233455689999999999999999999998544332 23789999999999999999999999999999
Q ss_pred CCceEEEEecCCC
Q 004002 340 AGKRIKLEPSRPG 352 (780)
Q Consensus 340 ~Gr~L~V~~a~~k 352 (780)
+.+.|++..+.-+
T Consensus 258 gsrpiklRkS~wk 270 (290)
T KOG0226|consen 258 GSRPIKLRKSEWK 270 (290)
T ss_pred ccchhHhhhhhHH
Confidence 9999998655443
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=4.3e-07 Score=97.15 Aligned_cols=77 Identities=35% Similarity=0.510 Sum_probs=68.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEecCC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~L-nG~~i~Gr~L~V~~a~~ 351 (780)
+..-++|||++|...+++.+|+++|.+||+|++|++... +++|||+|.++++|+.|..++ |...|+|++|+|.|+++
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 344579999999999999999999999999999998654 569999999999999988765 55588999999999998
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=9.6e-08 Score=96.32 Aligned_cols=131 Identities=22% Similarity=0.305 Sum_probs=108.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
..+||||.|+-..|+|+-|.++|-+-|+|..+.+ .++.| ||||.|.++-...-|++-+||..+.++.++|++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~--- 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL--- 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc---
Confidence 4689999999999999999999999999999872 45556 999999999999999999999999999988864
Q ss_pred CCCCCCCCCCccceeecC----CCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 267 KDNPSDKDLNQGTLVVFN----LDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 267 k~~~s~~~~~~~~L~V~N----Lp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
+.++ |+..++++.+.+.|+.-|.|..+++ +++.+.++|+.+....+.-.|++.-.+..
T Consensus 84 --------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 84 --------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred --------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 2333 6677899999999999999988875 45577888988877776666766544443
Q ss_pred c
Q 004002 339 I 339 (780)
Q Consensus 339 i 339 (780)
.
T Consensus 150 ~ 150 (267)
T KOG4454|consen 150 L 150 (267)
T ss_pred c
Confidence 3
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=8.9e-08 Score=111.96 Aligned_cols=138 Identities=14% Similarity=0.232 Sum_probs=118.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
.++||.||+..+.+.+|...|..+|.+..+. ..++.||+|||.|...++|.+|+....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------ 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------ 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------
Confidence 5899999999999999999999999877654 36889999999999999999999954433333
Q ss_pred CCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 004002 268 DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (780)
Q Consensus 268 ~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~ 343 (780)
...|+|.|+|+..|.++|+.+++.+|.+++.++ .++.+|.++|.|.+..+|.+++..+.+..+.-+.
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 236899999999999999999999999999864 5678999999999999999999888888777777
Q ss_pred EEEEecCC
Q 004002 344 IKLEPSRP 351 (780)
Q Consensus 344 L~V~~a~~ 351 (780)
+.|..+.|
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 77777665
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=8e-07 Score=94.95 Aligned_cols=79 Identities=20% Similarity=0.404 Sum_probs=72.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.|...|||..|.+-+|+++|.-+|++||.|.+|. .+|.+..||||+|.+.+++++|.-+|++..|..+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 3668999999999999999999999999999986 57889999999999999999999999999999999999998
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
..-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 6543
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.1e-06 Score=93.80 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=71.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
+...|||--|.+-+|++||+-||+.||.|+.|.+ ++.+-.||||+|++.+++++|.-+|....|+.++|.|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4568999999999999999999999999999865 66677899999999999999999999999999999999998
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
.-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 644
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=85.73 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=72.2
Q ss_pred CCCccceeecCCCCCCChhHHHHHhccc-CCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~y-G~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
....+.+||..+|.-+-+.++...|.++ |.|..+++ ||.++|||||+|++.+.|+-|-+.||++.+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455789999999999999999999998 77777765 89999999999999999999999999999999999999
Q ss_pred ecCCC
Q 004002 348 PSRPG 352 (780)
Q Consensus 348 ~a~~k 352 (780)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98887
No 125
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=1.5e-06 Score=89.22 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=97.3
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE----------EEeccCccCcccceEEEeecCccccCcccccccCC--CCccc
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM----------ELEGEPQESLSMSMSKISISDSASGNGLLHYSVPN--GAGTV 181 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i----------~V~~d~~esa~~g~~~v~~~~~~~a~~~~~~~l~n--~~~k~ 181 (780)
|.+++|++|++...+.++..+|..+|.+ +|+|+....+.-++....-.+.........+.... ..+..
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~ 80 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP 80 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC
Confidence 4578999999999999999999999987 34444333322222211111000000000000000 00000
Q ss_pred C-CC----CC---CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcc
Q 004002 182 A-GE----HP---YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253 (780)
Q Consensus 182 ~-g~----~~---~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~ 253 (780)
. +. .. ......+.|+|.+++..+.+.+|...|..+|.+..... .++++||+|...++|.+|+..|++..
T Consensus 81 ~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 81 RGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchh
Confidence 0 10 00 11334578999999999999999999999999954332 78999999999999999999999999
Q ss_pred ccccccccccC
Q 004002 254 LRRRKLDIHFS 264 (780)
Q Consensus 254 l~gr~I~V~~a 264 (780)
+.++.|.+...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999999543
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.22 E-value=1.6e-06 Score=97.11 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=67.7
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
++|||.+|...+...+|+.||++||.|+-.++ ++.-+.||||++.+.++|.+||..|+.+++.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999988775 344578999999999999999999999999999999998865
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.20 E-value=3.1e-06 Score=85.23 Aligned_cols=80 Identities=18% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcC-CCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~y-G~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
.......++|..+|.-+-+.++..+|.++ |.|..++ .||.+||||||+|++.+.|+-|-+.||+..|.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33456789999999999999999999998 6666665 58999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 004002 262 HFSIPK 267 (780)
Q Consensus 262 ~~a~pk 267 (780)
++-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987654
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.16 E-value=4e-06 Score=93.98 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=69.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
....++|||.+|...+-..+|+.+|++||+|.-.+ .+...++|+||++.+.++|.+||..|+...|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34568999999999999999999999999998766 2345789999999999999999999999999999999987
Q ss_pred CCC
Q 004002 264 SIP 266 (780)
Q Consensus 264 a~p 266 (780)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 643
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.11 E-value=2.4e-07 Score=100.63 Aligned_cols=152 Identities=19% Similarity=0.338 Sum_probs=122.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCc-cccccccccccCCCCCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDNPS 271 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~-~l~gr~I~V~~a~pk~~~s 271 (780)
.+||++||.+.++-.+|+.+|..- .+-.....--..||+||.+.+...|.+|++.++|+ .+.|+++.|.++.++..++
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 468999999999999999999743 11100011124689999999999999999999996 5899999999988876543
Q ss_pred CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCc--ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 272 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 272 ~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~s--rG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
+.+-|.|+|....++-|..+...||.|+.|..+... .-..-|.|...+.+..||.+|+|..+....+++.+-
T Consensus 81 ------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 81 ------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred ------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 358999999999999999999999999998643221 223457788999999999999999999999999876
Q ss_pred CC
Q 004002 350 RP 351 (780)
Q Consensus 350 ~~ 351 (780)
-.
T Consensus 155 Pd 156 (584)
T KOG2193|consen 155 PD 156 (584)
T ss_pred ch
Confidence 43
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.07 E-value=1.3e-05 Score=81.40 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=66.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEE--EeCCCc----ccEEEEEEcCHHHHHHHHHHhCCCccC---CceEEE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALKSLNRSDIA---GKRIKL 346 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v--~~~g~s----rG~aFV~F~~~e~A~~Ai~~LnG~~i~---Gr~L~V 346 (780)
..+||||.+||.++..-||..+|.+|-.-+.+ +.+.+. +-+|||.|.+..+|++|+.+|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999998554444 444433 368999999999999999999999886 688999
Q ss_pred EecCCCch
Q 004002 347 EPSRPGGA 354 (780)
Q Consensus 347 ~~a~~k~~ 354 (780)
++++....
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987654
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.02 E-value=9.4e-06 Score=93.46 Aligned_cols=84 Identities=18% Similarity=0.375 Sum_probs=72.6
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--------CCCcceEEEEEEecHHHHHHHHHHccCccc
Q 004002 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (780)
Q Consensus 183 g~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~--------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l 254 (780)
|....++...++|||+||++.++++.|...|.+||+|.++++ ..+-+-||||.|.+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 333334456689999999999999999999999999999882 345677999999999999999999999999
Q ss_pred cccccccccCCC
Q 004002 255 RRRKLDIHFSIP 266 (780)
Q Consensus 255 ~gr~I~V~~a~p 266 (780)
.+..+++.|+++
T Consensus 245 ~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 245 MEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeccccc
Confidence 999999999854
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.01 E-value=4.7e-05 Score=82.48 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=106.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC-----CCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~y-----G~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
....+..++|||.-++.+|..+|.-. |.+......++..|.|.|.|.+.|.-+-|++. +...+.++.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 34567788999999999999999732 33333335678889999999999999999995 7777888888887654
Q ss_pred CCCCC------------CCCCCCccceeecCCCCCCChhHHHHHhccc----CCeeEE---E-eCCCcccEEEEEEcCHH
Q 004002 266 PKDNP------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAY----GEVKEI---R-ETPHKRHHKFIEFYDVR 325 (780)
Q Consensus 266 pk~~~------------s~~~~~~~~L~V~NLp~~vteedL~~~Fs~y----G~I~~v---~-~~g~srG~aFV~F~~~e 325 (780)
..+-- --...++-.|.+++||++.++.|+.++|.+- |.++.| + -+++..|-|||.|...+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 43210 0011234467789999999999999999732 222333 2 26778899999999999
Q ss_pred HHHHHHHH
Q 004002 326 AAEAALKS 333 (780)
Q Consensus 326 ~A~~Ai~~ 333 (780)
+|+.||.+
T Consensus 218 ~aq~aL~k 225 (508)
T KOG1365|consen 218 DAQFALRK 225 (508)
T ss_pred HHHHHHHH
Confidence 99999985
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.95 E-value=1.7e-05 Score=83.25 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
...+|+|.|||..|++++|+++|+.||.+..+- ..|++.|.|-|.|...++|.+|++.+++..+.|++|++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 347899999999999999999999999877664 5788999999999999999999999999999999998876544
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=92.89 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=70.6
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe--------CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--------TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~--------~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
+...++|||+||++.++++.|...|+.||.|..+++ ....+.+|||-|-++.+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 456689999999999999999999999999999975 233467999999999999999999999999999999
Q ss_pred EEecCC
Q 004002 346 LEPSRP 351 (780)
Q Consensus 346 V~~a~~ 351 (780)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999965
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.86 E-value=3.7e-05 Score=80.65 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
....|+|.|||..|+++||+++|..||.++.+-+ .+.+.|.|-|.|...++|++|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3467999999999999999999999998888754 677789999999999999999999999999999999987766
Q ss_pred Cc
Q 004002 352 GG 353 (780)
Q Consensus 352 k~ 353 (780)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00012 Score=82.52 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=102.1
Q ss_pred CCCCCchHHhhhcCCceeeeccCCCCCChHHHHHHhcCCCcEEEeccC-----ccCcccc---eEEEeecCccccCcc--
Q 004002 100 NSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEP-----QESLSMS---MSKISISDSASGNGL-- 169 (780)
Q Consensus 100 nlLP~deddl~s~v~~el~V~~Lp~s~~E~el~dlFs~~G~i~V~~d~-----~esa~~g---~~~v~~~~~~~a~~~-- 169 (780)
+.++.. +.-...+..+++|++||++++|.++...|..||.+.|+-.. .....+| ++++-|.+...-..+
T Consensus 246 ~~~~~~-~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 246 GSLPPR-GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccCCC-CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 344433 33344457899999999999999999999999999776541 1122345 888777754322100
Q ss_pred ------ccc-------ccCCCCcc----------cCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhh-cCCCEEEEE--
Q 004002 170 ------LHY-------SVPNGAGT----------VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLY-- 223 (780)
Q Consensus 170 ------~~~-------~l~n~~~k----------~~g~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~-~yG~I~sv~-- 223 (780)
..+ .+..+... ...+....-++.+|||||+||.-++.+||..+|+ -||.|..+-
T Consensus 325 aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID 404 (520)
T KOG0129|consen 325 ACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID 404 (520)
T ss_pred HHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec
Confidence 000 11111000 0112223456789999999999999999999999 899998764
Q ss_pred ---eCCCcceEEEEEEecHHHHHHHHHH
Q 004002 224 ---TACKHRGFVMISYYDIRAARTAMRA 248 (780)
Q Consensus 224 ---~tgkskG~aFV~F~~~e~A~~Al~~ 248 (780)
..+-.+|-|-|+|.+..+-.+||.+
T Consensus 405 tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 405 TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 2345789999999999999999985
No 137
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.83 E-value=1.2e-05 Score=80.95 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=51.0
Q ss_pred CCcceeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEee--ccccC--CcceeeEEeccCCccchHHHHHHhcCceeEEE
Q 004002 691 EDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP--IDFKN--KCNVGYAFINMLSPLHIIPFYEVLFSCAIGIL 766 (780)
Q Consensus 691 ~d~rtt~mirniPn~~~~~~l~~~i~~~~~~~ydf~ylp--~d~~~--~~n~gyafin~~~~~~~~~f~~~f~~~~~~~~ 766 (780)
+..++.|.||+||+.+|.+.+++.|+......++|-|++ .+... .+-..-|||||.+.+++..|.+.|+|+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~---- 79 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV---- 79 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE----
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE----
Confidence 346789999999999999999998887666676666665 33332 2334569999999999999999999997
Q ss_pred EeeCCCc
Q 004002 767 FFNNNNN 773 (780)
Q Consensus 767 ~~~~~~~ 773 (780)
|-|+..
T Consensus 80 -F~D~kg 85 (176)
T PF03467_consen 80 -FVDSKG 85 (176)
T ss_dssp -EE-TTS
T ss_pred -EECCCC
Confidence 555543
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.79 E-value=2.9e-05 Score=87.41 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=65.0
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~-----g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
..|||+|||.++++++|+++|..||.|+..++. ++...||||+|++.++++.||++ +-..+++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 459999999999999999999999999987541 33338999999999999999996 577889999999988775
Q ss_pred c
Q 004002 353 G 353 (780)
Q Consensus 353 ~ 353 (780)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.79 E-value=2.3e-05 Score=88.18 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=61.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---e--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY---T--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~---~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+|||+|||.++++++|+++|..||+|+... . .++..+||||+|.+.++++.||.+ +-..|+++++.|+--
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 5699999999999999999999999998765 1 255559999999999999999997 577788999988743
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.76 E-value=3.8e-05 Score=79.54 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=66.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE-----EEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-----LYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s-----v~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
...+-+||.+.|..+++++.|-..|.+|-.... -+.+++++||+||.|.++.++..|+++|+|+.++.++|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 344579999999999999999999999864332 226899999999999999999999999999999999999875
Q ss_pred CC
Q 004002 264 SI 265 (780)
Q Consensus 264 a~ 265 (780)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 53
No 141
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.73 E-value=5.7e-05 Score=81.18 Aligned_cols=74 Identities=14% Similarity=0.314 Sum_probs=66.4
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEE--------Ee----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--------RE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v--------~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L 344 (780)
.+.|||.|||.++|.+++.++|++||.|..= ++ .|+-+|-|.|.|-..++..-|++.|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4579999999999999999999999988652 22 56778999999999999999999999999999999
Q ss_pred EEEecC
Q 004002 345 KLEPSR 350 (780)
Q Consensus 345 ~V~~a~ 350 (780)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 998775
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.70 E-value=0.00013 Score=63.91 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=48.4
Q ss_pred cceeecCCCCCCChh----HHHHHhccc-CCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 278 GTLVVFNLDPSVSNE----DLRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 278 ~~L~V~NLp~~vtee----dL~~~Fs~y-G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
..|+|.|||.+.+.. .|++++.-+ |.|..| . .+.|+|+|.+.+.|++|.+.|+|..+-|.+|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 469999999988754 467788888 567766 2 367999999999999999999999999999999998543
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.69 E-value=4.9e-05 Score=79.69 Aligned_cols=80 Identities=24% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 004002 272 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (780)
Q Consensus 272 ~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V 346 (780)
.+.+....+||+|++..+|.+++..+|+.||.|..+. ..++.+||+||+|.+.+.+++|++ |+|..|.|+.|+|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3455667899999999999999999999999996443 466789999999999999999999 9999999999999
Q ss_pred EecCCC
Q 004002 347 EPSRPG 352 (780)
Q Consensus 347 ~~a~~k 352 (780)
.+.+-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887644
No 144
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.66 E-value=0.00011 Score=84.65 Aligned_cols=161 Identities=14% Similarity=0.036 Sum_probs=116.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~-yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
.++.+-++..+.+.++.+++++|.. +-.-..+. +.+...|-++|.|....++++|++. +......|.+.|..+..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 4466667789999999999999963 32222222 3444578999999999999999984 55556666666543211
Q ss_pred CCC-------------CC-------------CC---------CCCccceeecCCCCCCChhHHHHHhcccCCeeE-EEe-
Q 004002 267 KDN-------------PS-------------DK---------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE- 309 (780)
Q Consensus 267 k~~-------------~s-------------~~---------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~-v~~- 309 (780)
... .. +. .....+|||..||..+++.++-++|...-.|++ |.+
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 100 00 00 011258999999999999999999998777766 665
Q ss_pred ---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 310 ---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 310 ---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
+++-++.|||.|...+++.+|+..-+...++.+.|+|.....+
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 3455688999999999999999877777788899999765443
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.49 E-value=4.1e-05 Score=83.22 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=115.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC--------CCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t--------gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..|-|.||.+.+|.++++.||.-.|+|..++.. ....-.|||.|.+...+..|-. |.++++-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999987732 2345689999999999887776 7777777766555331
Q ss_pred CCCCCC-----------------------------C--CCC-------------------C--CccceeecCCCCCCChh
Q 004002 265 IPKDNP-----------------------------S--DKD-------------------L--NQGTLVVFNLDPSVSNE 292 (780)
Q Consensus 265 ~pk~~~-----------------------------s--~~~-------------------~--~~~~L~V~NLp~~vtee 292 (780)
...-.+ . +.. + -..+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 100000 0 000 0 01479999999999999
Q ss_pred HHHHHhcccCCeeEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 293 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 293 dL~~~Fs~yG~I~~v~~~-g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
++-+.|..+|+|...++. +....+|-|+|........|++ ++|.++.-....+...+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 999999999999998763 3344678899999999999998 577777644444433333
No 146
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.47 E-value=0.00023 Score=84.42 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=109.8
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE-EEeccCc-cCcccceEEEeecCccccC----cccccccCCCCcccCCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQ-ESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 187 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i-~V~~d~~-esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g~~~~ 187 (780)
.+.+++++|...+++.+++..|..+|.+ .|.++.. -.+..+++++.+.....+- ...+..+.++..+. +-...
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~-glG~~ 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI-GLGQP 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc-ccccc
Confidence 4789999999999999999999999988 6766654 3344455555544332221 11111121111111 11111
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccc--cccccccCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 265 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g--r~I~V~~a~ 265 (780)
...+.+.+||++|...+....|...|..||.|..|.. -+..-||+|.|.+...|+.|++.|-|..|++ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 3456789999999999999999999999999998863 3345699999999999999999999999974 678888876
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.46 E-value=0.0004 Score=63.15 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=57.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccc----cccccc
Q 004002 193 RTLFVRNINSNVEDSELRALFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 261 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~y--G~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~----gr~I~V 261 (780)
+||-|+|||...|.++|.+++... |...=++ .+..+.|||||.|.+++.|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988753 3322222 35668999999999999999999999998875 334455
Q ss_pred ccCC
Q 004002 262 HFSI 265 (780)
Q Consensus 262 ~~a~ 265 (780)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.35 E-value=0.00011 Score=74.54 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=66.7
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
..++|||.|+-..++||-|.++|-+-|.|..|.+ .++.| ||||.|.+.-...-|++-|||..+.+..|++++-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3579999999999999999999999999999976 33344 999999999999999999999999999999887543
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.34 E-value=0.0005 Score=60.35 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=48.5
Q ss_pred cEEEEeCCCCCCCHHH----HHHHhhcCC-CEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 193 RTLFVRNINSNVEDSE----LRALFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 193 ~tLfVgNLp~~vteee----Lr~lF~~yG-~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..|+|.|||.+.+-.. |+.++.-+| .|..| +.+.|.|.|.+.+.|++|.+.|+|..+.|++|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4799999999998765 556776775 67765 24789999999999999999999999999999999974
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.31 E-value=0.00024 Score=74.48 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=67.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
.+...+.+||+|+...+|.+++...|+.||.|..+. ..+..|||+||+|.+.+.+++|++ |++..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345668999999999999999999999999996433 356789999999999999999999 99999999999997
Q ss_pred cCC
Q 004002 263 FSI 265 (780)
Q Consensus 263 ~a~ 265 (780)
+.+
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 754
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.30 E-value=0.00049 Score=74.49 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=106.1
Q ss_pred cCCceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc---cccc-cc---------C
Q 004002 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG---LLHY-SV---------P 175 (780)
Q Consensus 112 ~v~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~---~~~~-~l---------~ 175 (780)
+.....+++.+-+.+++.++..++...|.. .+.+.......+++..+.|........ +... .+ .
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 346788999999999988787888888864 222223344555666666554432221 1110 00 0
Q ss_pred CCCcc-cCCCC-CCCCCCCcEEE-EeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHH
Q 004002 176 NGAGT-VAGEH-PYGEHPSRTLF-VRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMR 247 (780)
Q Consensus 176 n~~~k-~~g~~-~~~e~~s~tLf-VgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~ 247 (780)
..... ..... .....+..++| |++|+.++++++|+..|..+|.|..++ .++..+|||+|.|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 00000 00000 11112334555 999999999999999999999999987 468899999999999999999999
Q ss_pred HccCccccccccccccCCCCC
Q 004002 248 ALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 248 ~Lng~~l~gr~I~V~~a~pk~ 268 (780)
. +...+.++++.+.+..+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 8889999999999877654
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.28 E-value=0.00047 Score=63.69 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=49.1
Q ss_pred ceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC-----ccCCceEEEEecCCCc
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-----DIAGKRIKLEPSRPGG 353 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~-----~i~Gr~L~V~~a~~k~ 353 (780)
.|.|.+++..++.++|++.|++||.|..|.+.. ....|+|+|.+.++|++|+.++.-. .+.+..+.++.-.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGe- 80 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGE- 80 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HH-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCH-
Confidence 578899999999999999999999999999853 2347999999999999999988543 566666666554322
Q ss_pred hhhhHhhhh
Q 004002 354 ARRNLMLQL 362 (780)
Q Consensus 354 ~r~~~l~ql 362 (780)
+-..+++..
T Consensus 81 eE~~Yw~ki 89 (105)
T PF08777_consen 81 EEEEYWKKI 89 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 223355444
No 153
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=0.00015 Score=85.68 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=115.0
Q ss_pred CcEEEEeCCCCCCCHH-HHHHHhhcCCCEEEEEeCC----Ccce-EEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 192 SRTLFVRNINSNVEDS-ELRALFEQYGDIRTLYTAC----KHRG-FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 192 s~tLfVgNLp~~vtee-eLr~lF~~yG~I~sv~~tg----kskG-~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.+...+.++.+...+. ..+..|..+|.|+.++... .+.. ++++.+....+++.|.. ..+.-+.++.+.|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3567788888887776 5678999999999987321 2223 78899999999999988 57888888988888877
Q ss_pred CCCCCCCCC------CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 004002 266 PKDNPSDKD------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 334 (780)
Q Consensus 266 pk~~~s~~~------~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~L 334 (780)
++....... ....++||+||+..+.+++|...|.++|.+..+++ .++-+|+|+|.|...++|.+||...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 654222111 12258999999999999999999999998877753 4667899999999999999999865
Q ss_pred CCCccC
Q 004002 335 NRSDIA 340 (780)
Q Consensus 335 nG~~i~ 340 (780)
.++.++
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 555444
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.72 E-value=0.0042 Score=66.71 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=62.3
Q ss_pred ccceeecCCCCCCChhH----H--HHHhcccCCeeEEEeCCCc------ccE--EEEEEcCHHHHHHHHHHhCCCccCCc
Q 004002 277 QGTLVVFNLDPSVSNED----L--RQIFGAYGEVKEIRETPHK------RHH--KFIEFYDVRAAEAALKSLNRSDIAGK 342 (780)
Q Consensus 277 ~~~L~V~NLp~~vteed----L--~~~Fs~yG~I~~v~~~g~s------rG~--aFV~F~~~e~A~~Ai~~LnG~~i~Gr 342 (780)
..-+||-+|++.+-.|+ | .++|++||.|+.|.+..+- .++ .||.|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34689999999987766 3 3889999999999763321 122 39999999999999999999999999
Q ss_pred eEEEEecCCC
Q 004002 343 RIKLEPSRPG 352 (780)
Q Consensus 343 ~L~V~~a~~k 352 (780)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.0026 Score=66.35 Aligned_cols=89 Identities=24% Similarity=0.347 Sum_probs=75.4
Q ss_pred HHHHHHHHHccCccccccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEE----EeCCCccc
Q 004002 240 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRH 315 (780)
Q Consensus 240 e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v----~~~g~srG 315 (780)
.-|+.|.++|++....++.++|.|+.. +.|||.||..-++.|.|++-|+.||.|... +..++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 357888899999999999999999863 469999999999999999999999998653 33556667
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCcc
Q 004002 316 HKFIEFYDVRAAEAALKSLNRSDI 339 (780)
Q Consensus 316 ~aFV~F~~~e~A~~Ai~~LnG~~i 339 (780)
-++|+|...-.|.+|+...+-.-+
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCcc
Confidence 899999999999999998754433
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.53 E-value=0.002 Score=70.06 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=69.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEE-------------EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-------------RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v-------------~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr 342 (780)
...++||.+||..+++++|.++|.++|.|+.= +.|...|+-|.|.|+|...|+.||.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 34689999999999999999999999988653 24677899999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 004002 343 RIKLEPSRPGG 353 (780)
Q Consensus 343 ~L~V~~a~~k~ 353 (780)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887654
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.42 E-value=0.0036 Score=69.35 Aligned_cols=67 Identities=33% Similarity=0.469 Sum_probs=55.9
Q ss_pred CCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCC------------------cccEEEEEEcCHHHHHHHHH
Q 004002 271 SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALK 332 (780)
Q Consensus 271 s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~------------------srG~aFV~F~~~e~A~~Ai~ 332 (780)
.++....++|.+.|||.+-.-|-|.+||+.+|.|+.|++-.- .+-+|+|+|+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344567789999999999999999999999999999986211 14579999999999999999
Q ss_pred HhCCC
Q 004002 333 SLNRS 337 (780)
Q Consensus 333 ~LnG~ 337 (780)
.|+-.
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 87644
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.40 E-value=0.0052 Score=49.72 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=42.8
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHH
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 331 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai 331 (780)
+.|-|.|.+.+..+. +...|..||+|..+.++ ......+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 357888888777644 55588899999999986 44678999999999999995
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.38 E-value=0.0069 Score=55.48 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=52.2
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEE------------eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce-
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR- 343 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~------------~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~- 343 (780)
..-|.|.|.|... -..+.+.|++||+|.+.. -......+--|+|+++.+|.+||+ -||..+.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4568999999884 466778899999998885 123446789999999999999998 5999999864
Q ss_pred EEEEecC
Q 004002 344 IKLEPSR 350 (780)
Q Consensus 344 L~V~~a~ 350 (780)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466664
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.36 E-value=0.0025 Score=70.13 Aligned_cols=70 Identities=17% Similarity=0.335 Sum_probs=58.8
Q ss_pred CcceeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEee-ccccCC-cceeeEEeccCCccchHHHHHHhcCce
Q 004002 692 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP-IDFKNK-CNVGYAFINMLSPLHIIPFYEVLFSCA 762 (780)
Q Consensus 692 d~rtt~mirniPn~~~~~~l~~~i~~~~~~~ydf~ylp-~d~~~~-~n~gyafin~~~~~~~~~f~~~f~~~~ 762 (780)
+....|.||++|+++|.+.|++.||- +...+.|-|+- -|+... |-.+.|||||..+.++..|.+.|+|+.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 34568999999999999999999999 77888888866 555433 335669999999999999999999985
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.27 E-value=0.0059 Score=65.64 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=61.2
Q ss_pred CcEEEEeCCCCCCCHHH----H--HHHhhcCCCEEEEEeCCC------cceE--EEEEEecHHHHHHHHHHccCcccccc
Q 004002 192 SRTLFVRNINSNVEDSE----L--RALFEQYGDIRTLYTACK------HRGF--VMISYYDIRAARTAMRALQNKPLRRR 257 (780)
Q Consensus 192 s~tLfVgNLp~~vteee----L--r~lF~~yG~I~sv~~tgk------skG~--aFV~F~~~e~A~~Al~~Lng~~l~gr 257 (780)
..-+||-+||+.+..|+ | .++|.+||.|..|.+..+ ..+. .||+|.+.++|.+||.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35789999999998887 3 269999999998873222 1222 49999999999999999999999999
Q ss_pred ccccccCCC
Q 004002 258 KLDIHFSIP 266 (780)
Q Consensus 258 ~I~V~~a~p 266 (780)
-|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988653
No 162
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.22 E-value=0.0055 Score=67.59 Aligned_cols=100 Identities=26% Similarity=0.351 Sum_probs=77.0
Q ss_pred ceeecCCCCCCChhHHHHHhccc--CCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC-ccCCceEEEEecCCCchh
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-DIAGKRIKLEPSRPGGAR 355 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~y--G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~-~i~Gr~L~V~~a~~k~~r 355 (780)
.||++||.+.++..||+.+|... +.-...- ...||+||.+.+..-|.+|++.++|+ ++.|+++.+..+-++..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 68999999999999999999864 1111111 23589999999999999999999997 889999999999887765
Q ss_pred h--hHhhhhchhccHHHHHHHHhhhCCC
Q 004002 356 R--NLMLQLNQELEQDESRILQHQVGSP 381 (780)
Q Consensus 356 ~--~~l~ql~~~~~~~~~~~~~~~~Gsp 381 (780)
. ..+++.++++..+-+.....+||.+
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 3 3455556666666666666666654
No 163
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.15 E-value=0.011 Score=54.62 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCc
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 252 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~ 252 (780)
+.|.|.+++..++.++|++.|++||+|.-|.. .+...-|+|.|.+.++|++|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999998873 233457999999999999999987544
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.05 E-value=0.014 Score=47.21 Aligned_cols=52 Identities=17% Similarity=0.420 Sum_probs=42.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHH
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 246 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al 246 (780)
+.|-|.+.+++..+.-| ..|..||+|..+... ...-+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 56788888887775555 588899999998754 45678999999999999985
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.04 E-value=0.0032 Score=65.72 Aligned_cols=68 Identities=29% Similarity=0.523 Sum_probs=58.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCC-------------ccc----EEEEEEcCHHHHHHHHHHhCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-------------KRH----HKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~-------------srG----~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
+.+.||+++||+.+....|++||+.||+|-.|.+.+. ++. -|.|+|.+-..|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999865321 111 28999999999999999999999
Q ss_pred cCCce
Q 004002 339 IAGKR 343 (780)
Q Consensus 339 i~Gr~ 343 (780)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99964
No 166
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.02 E-value=0.015 Score=67.81 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=61.7
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCee-EE--E--eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVK-EI--R--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~-~v--~--~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
+.|-+.|+|++++-+||.++|..|-.+- +| + ..+...|.+.|.|++.++|.+|...|+++.|..++|+|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999995442 22 2 3677889999999999999999999999999999998864
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.98 E-value=0.0071 Score=65.95 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-------------eCCCcceEEEEEEecHHHHHHHHHHccCcccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-------------~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr 257 (780)
...+|||-+||..+++++|.++|.++|.|..-+ .|++.||-|.|+|.+..+|+.|+.-++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 447999999999999999999999999886422 4788999999999999999999999999999999
Q ss_pred ccccccCCCC
Q 004002 258 KLDIHFSIPK 267 (780)
Q Consensus 258 ~I~V~~a~pk 267 (780)
+|+|..+..+
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999877543
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.57 E-value=0.0058 Score=63.92 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=49.3
Q ss_pred hHHHHHhc-ccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 292 EDLRQIFG-AYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 292 edL~~~Fs-~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
|||...|+ +||+|+++++ -..-.|-++|.|...++|++|+..||+.++.|++|.+++..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44455555 8999999854 2233677999999999999999999999999999999887543
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.025 Score=64.75 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCccceeecCCCCCC--C----hhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC-Cce
Q 004002 275 LNQGTLVVFNLDPSV--S----NEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKR 343 (780)
Q Consensus 275 ~~~~~L~V~NLp~~v--t----eedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~-Gr~ 343 (780)
.-...|+|.|+|.-- . ..-|..+|+++|+|..... .+..+||.|++|.+..+|+.|++.|||+.++ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 344688999998522 1 2346688999999988753 5668999999999999999999999999886 466
Q ss_pred EEEE
Q 004002 344 IKLE 347 (780)
Q Consensus 344 L~V~ 347 (780)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.18 E-value=0.019 Score=63.82 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=59.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC----------CC--------cceEEEEEEecHHHHHHHHHHcc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----------CK--------HRGFVMISYYDIRAARTAMRALQ 250 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t----------gk--------skG~aFV~F~~~e~A~~Al~~Ln 250 (780)
+-++++|.+-|||.+-.-+-|.++|+.+|.|..|++- +. .+-+|+|+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4588999999999999999999999999999998731 11 26689999999999999999876
Q ss_pred Cccccccccccc
Q 004002 251 NKPLRRRKLDIH 262 (780)
Q Consensus 251 g~~l~gr~I~V~ 262 (780)
...-+..-++|.
T Consensus 308 ~e~~wr~glkvk 319 (484)
T KOG1855|consen 308 PEQNWRMGLKVK 319 (484)
T ss_pred hhhhhhhcchhh
Confidence 555444444443
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.91 E-value=0.058 Score=52.54 Aligned_cols=73 Identities=32% Similarity=0.454 Sum_probs=53.0
Q ss_pred CccceeecCCCC------CCC---hhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 004002 276 NQGTLVVFNLDP------SVS---NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (780)
Q Consensus 276 ~~~~L~V~NLp~------~vt---eedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V 346 (780)
..+|+.|.=+.. ... -.+|.+.|..||+|.-||+.+ +.-.|.|.+-+.|.+|+. |+|.++.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 446776664441 122 236788899999999999865 458999999999999997 8999999999999
Q ss_pred EecCCC
Q 004002 347 EPSRPG 352 (780)
Q Consensus 347 ~~a~~k 352 (780)
+...|.
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 988765
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.89 E-value=0.043 Score=50.36 Aligned_cols=73 Identities=11% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE------------eCCCcceEEEEEEecHHHHHHHHHHccCcccccc-
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~------------~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr- 257 (780)
..+-|.|=+.|+. ....+.+.|++||+|.+.. ..........|+|.++.+|++||++ ||..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3466888888888 5567788999999998875 1123456899999999999999995 99999875
Q ss_pred ccccccCC
Q 004002 258 KLDIHFSI 265 (780)
Q Consensus 258 ~I~V~~a~ 265 (780)
.+-|.+..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 44466653
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.05 Score=62.35 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=54.7
Q ss_pred CcEEEEeCCCCCCC------HHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccc-ccccc
Q 004002 192 SRTLFVRNINSNVE------DSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLD 260 (780)
Q Consensus 192 s~tLfVgNLp~~vt------eeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~-gr~I~ 260 (780)
...|+|.|+|.-=. ..-|..+|+++|+|...+ ..|+.+||.|++|.+..+|+.|++.|+|+.|. ..+..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 35677888775322 234668999999998877 45779999999999999999999999999884 44444
Q ss_pred c
Q 004002 261 I 261 (780)
Q Consensus 261 V 261 (780)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.58 E-value=0.03 Score=60.66 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=58.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG--~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
.-.+||+||-|.+|+++|.+.....| .+.+++ ..|.+||||+|...+..+.++.|+.|..+.|+|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35799999999999999998887666 233333 57999999999999999999999999999999876544
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.51 E-value=0.029 Score=58.80 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=57.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC-------------CCcce----EEEEEEecHHHHHHHHHHccCcc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-------------CKHRG----FVMISYYDIRAARTAMRALQNKP 253 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t-------------gkskG----~aFV~F~~~e~A~~Al~~Lng~~ 253 (780)
....||+.+||+.+.-.-||++|+.||.|-.|+.. +.+++ -|.|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 44689999999999999999999999999988721 22232 26799999999999999999999
Q ss_pred ccccc
Q 004002 254 LRRRK 258 (780)
Q Consensus 254 l~gr~ 258 (780)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.35 E-value=0.073 Score=56.69 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=49.2
Q ss_pred hhHHHHHhcccCCeeEEEe--C-CCc---ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 291 NEDLRQIFGAYGEVKEIRE--T-PHK---RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 291 eedL~~~Fs~yG~I~~v~~--~-g~s---rG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
++++++.+++||.|..|-+ . +.. .---||+|...++|.+|+-.|||+.|+|+.+...|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678889999999988754 1 111 11379999999999999999999999999999887653
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.74 E-value=0.22 Score=48.14 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=58.5
Q ss_pred CCCCccceeecCCCCCCC-hhHHH---HHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 273 KDLNQGTLVVFNLDPSVS-NEDLR---QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vt-eedL~---~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
++..-.+|.|.=|...+. .+||+ +..+.||.|.+|...|+ .-|.|.|.|..+|.+|+.++.. ...|..+.+.|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 344557888876666652 34444 55678999999998764 5699999999999999999876 66788888888
Q ss_pred cCC
Q 004002 349 SRP 351 (780)
Q Consensus 349 a~~ 351 (780)
.++
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 754
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.56 E-value=0.031 Score=58.64 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHHHHHhh-cCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 207 SELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 207 eeLr~lF~-~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
+++...|+ +||+|+.+++ .-.-+|-++|.|...++|++|+..||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444555 8999998752 22357889999999999999999999999999999988753
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.54 E-value=0.23 Score=43.89 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=42.4
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~Ln 335 (780)
...+|. .|..+...||.++|++||.|.---+.. .-|||...+++.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 345565 999999999999999999998777753 359999999999999999886
No 180
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=90.70 E-value=0.25 Score=53.76 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=60.9
Q ss_pred cceeecCCCCCCChhHHHHHhcccCC--eeEE-----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGE--VKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~--I~~v-----~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
-++||+||-.-+|++||.+.....|. +.++ +..+.+||||+|-..+..+.++-++-|-.++|.|..-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 47999999999999999988876653 3333 3478899999999999999999999999999999776665554
Q ss_pred CC
Q 004002 351 PG 352 (780)
Q Consensus 351 ~k 352 (780)
+.
T Consensus 161 K~ 162 (498)
T KOG4849|consen 161 KT 162 (498)
T ss_pred hh
Confidence 33
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.60 E-value=0.18 Score=58.33 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccc---ccccccc
Q 004002 187 YGEHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDIH 262 (780)
Q Consensus 187 ~~e~~s~tLfVgNLp~~vteeeLr~lF~~-yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~---gr~I~V~ 262 (780)
.....+..|+|.||-.-.|.-+|+.++.+ .|.|...- .-+-|-.|||.|.+.++|.+.+.+|+|..+. .+.|.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W-mDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW-MDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHH-HHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 45567889999999999999999999995 45555442 2345678999999999999999999998763 5666666
Q ss_pred cCC
Q 004002 263 FSI 265 (780)
Q Consensus 263 ~a~ 265 (780)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 653
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.51 E-value=0.37 Score=54.57 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=55.2
Q ss_pred CCCCC-ChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 285 LDPSV-SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 285 Lp~~v-teedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
.+..+ +.++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|-. .++..|+++-|+|.|-.+..
T Consensus 380 ~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 380 SPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34443 57899999999999999987433 4569999999999977765 68999999999999998855
No 183
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.33 E-value=1 Score=48.50 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=57.6
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEecCCCc
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPGG 353 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr-~L~V~~a~~k~ 353 (780)
+.=|.|.++|..-. .-|..+|++||+|++.... ....+-.|+|.++.+|.+||.. ||+.|+|. -|-|+.+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 44577888887644 4577889999999887653 5567999999999999999985 99999985 45577765543
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.08 E-value=1 Score=37.72 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=41.5
Q ss_pred cceeecCCCCCCChhHHHHHhccc---CCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHh
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAY---GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 334 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~y---G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~L 334 (780)
..|+|.|++ +++.++|+.+|..| .....|.+.... -+=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 479999996 48889999999998 123455543322 3789999999999999875
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.03 E-value=0.25 Score=57.27 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=62.5
Q ss_pred ccceeecCCCCCCChhHHHHHhc-ccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc---CCceEEEEecCCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIKLEPSRPG 352 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs-~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i---~Gr~L~V~~a~~k 352 (780)
...|||.||-..+|.-+|+.++. ..|.|++..+ .+-|.+|||.|.+.++|.+.+.+|||... +++.|.+.|....
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 46899999999999999999999 5667777644 34567899999999999999999999744 3588999988654
No 186
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.23 E-value=0.35 Score=53.52 Aligned_cols=72 Identities=22% Similarity=0.517 Sum_probs=59.2
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCC--------cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~--------srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
+.|.|.||.+.+|.++++.+|.-.|+|.++++.+. ..-.|||.|.|...+..|.. |..+.+=++.|.|-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999987442 23479999999999888875 7777777777777655
Q ss_pred C
Q 004002 350 R 350 (780)
Q Consensus 350 ~ 350 (780)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.96 E-value=1.3 Score=42.98 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=56.6
Q ss_pred CCCCcEEEEeCCCCCCCH-HHHH---HHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVED-SELR---ALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vte-eeLr---~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
+.+-.||.|+=|..++.- +||+ ..++.||+|.+|...|+ --|.|.|.|..+|-+|+.+++. ...|..+.+.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 446689999887777643 4444 55678999999876554 5699999999999999999876 556777787775
Q ss_pred C
Q 004002 265 I 265 (780)
Q Consensus 265 ~ 265 (780)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.91 E-value=0.81 Score=52.78 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhh--cCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccC--ccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFE--QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~--~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng--~~l~gr~I~V~ 262 (780)
..+..|.|+++-||.++-.|+++.||. .+-++.+|.- ... ---||+|++..+|++|.+.|.. +.|.|++|..+
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscef-a~N-~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEF-AHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee-eec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 334568899999999999999999997 3667777752 111 2368999999999999998754 44667665443
No 189
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.88 E-value=0.67 Score=45.30 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=51.7
Q ss_pred CCcEEEEeCCCC-----CCCH----HHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 191 PSRTLFVRNINS-----NVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 191 ~s~tLfVgNLp~-----~vte----eeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
+..||.|.=+.+ ..-+ .+|.+.|..||++.-+|..+ +.-.|+|.+-+.|-+|+. ++|..+.|+.|.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 567877775551 1223 36778899999998777333 467899999999999999 8999999999999
Q ss_pred ccCCC
Q 004002 262 HFSIP 266 (780)
Q Consensus 262 ~~a~p 266 (780)
+...|
T Consensus 102 ~LKtp 106 (146)
T PF08952_consen 102 RLKTP 106 (146)
T ss_dssp EE---
T ss_pred EeCCc
Confidence 86554
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.54 E-value=0.25 Score=53.97 Aligned_cols=79 Identities=15% Similarity=0.313 Sum_probs=61.9
Q ss_pred ccceeecCCCCCCChhHH-H--HHhcccCCeeEEEeCCCc--------ccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 277 QGTLVVFNLDPSVSNEDL-R--QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL-~--~~Fs~yG~I~~v~~~g~s--------rG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
..-+||-+|+..+.++.+ + +.|++||.|..|...... ..-++|.|...++|..||...+|...+|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 346788889887755544 3 579999999998763321 11389999999999999999999999999998
Q ss_pred EEecCCCchh
Q 004002 346 LEPSRPGGAR 355 (780)
Q Consensus 346 V~~a~~k~~r 355 (780)
..++..+...
T Consensus 157 a~~gttkycs 166 (327)
T KOG2068|consen 157 ASLGTTKYCS 166 (327)
T ss_pred HhhCCCcchh
Confidence 8888776543
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.26 E-value=1.2 Score=50.53 Aligned_cols=66 Identities=24% Similarity=0.159 Sum_probs=57.1
Q ss_pred ceeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEeeccccCCcceeeEEeccCCccchHHHHHHhcCce
Q 004002 694 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEVLFSCA 762 (780)
Q Consensus 694 rtt~mirniPn~~~~~~l~~~i~~~~~~~ydf~ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~~~~ 762 (780)
-|+|-|=-+|+.+|..+|+..+....+-=-|+--++ | .--|.=-+-|-|.+..++..||+.|||+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCc
Confidence 589999999999999999999998887777888888 2 33344338999999999999999999998
No 192
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.15 E-value=0.95 Score=48.52 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCEEEEEeC---C--Cc-ceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 206 DSELRALFEQYGDIRTLYTA---C--KH-RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 206 eeeLr~lF~~yG~I~sv~~t---g--ks-kG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
++++++..++||.|..|.+. + .. .--.||+|...++|.+|+-.|||..|+||.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35788899999999887621 1 11 1237999999999999999999999999998877643
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.61 E-value=2.6 Score=37.43 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=41.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng 251 (780)
...+|. .|..+...||.++|+.||.|.---+. -.-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 456676 99999999999999999998754332 24599999999999999998753
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.17 E-value=2.2 Score=39.88 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=54.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEeeccccCCcceeeEEeccCCccchHHHHHHhcCce
Q 004002 693 TRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEVLFSCA 762 (780)
Q Consensus 693 ~rtt~mirniPn~~~~~~l~~~i~~~~~~~ydf~ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~~~~ 762 (780)
.+|+|-+=-+|+.++..+++..+-+.......-+.+.-|.. -|.==+-|-|.+...|..||+.|||++
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 34666666889999988877777787777777777776654 344338999999999999999999998
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.13 E-value=0.83 Score=46.20 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=49.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-CCCE---EEEE--e-----CCCcceEEEEEEecHHHHHHHHHHccCcccccc--
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-- 257 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~-yG~I---~sv~--~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr-- 257 (780)
...+|.||+||+.+|++++.+.+.. +++- ..+. . ....-.-|||.|.+.+++..-+..++|..+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999999987776 6665 2332 1 011234599999999999999999999887543
Q ss_pred ---ccccccCCC
Q 004002 258 ---KLDIHFSIP 266 (780)
Q Consensus 258 ---~I~V~~a~p 266 (780)
...|.+|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 334555543
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.03 E-value=0.45 Score=51.99 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=59.8
Q ss_pred cEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEeCCCc--------ceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 193 RTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTACKH--------RGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr---~lF~~yG~I~sv~~tgks--------kG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
.-+||-+|+..+.++.+. +.|.+||.|.++...... ..-++|+|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888999887766554 489999999988732211 123899999999999999999999999999888
Q ss_pred ccCCCC
Q 004002 262 HFSIPK 267 (780)
Q Consensus 262 ~~a~pk 267 (780)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 876654
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.64 E-value=1.3 Score=45.06 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=45.4
Q ss_pred ChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEecCCCc
Q 004002 290 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 290 teedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~Ln--G~~i~Gr~L~V~~a~~k~ 353 (780)
..+.|+++|..|+.+......+.- +-..|.|.+.++|.+|...|+ +..+.|..++|.+++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 357899999999998887654322 348999999999999999999 999999999999996544
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.77 E-value=2.1 Score=49.53 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=66.6
Q ss_pred HHHHHHHccCccccccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcc--cCCeeEEEeCCCcccEEEE
Q 004002 242 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA--YGEVKEIRETPHKRHHKFI 319 (780)
Q Consensus 242 A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~--yG~I~~v~~~g~srG~aFV 319 (780)
-..+++...+..+..+-.+|+-. .+.+.+.++-||..+-.|+++.||+. +-.+++|.+.- .. -=||
T Consensus 150 I~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~-N~-nWyI 217 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH-ND-NWYI 217 (684)
T ss_pred HHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee-cC-ceEE
Confidence 34455655555565555555422 23457888999999999999999984 77888887632 22 2599
Q ss_pred EEcCHHHHHHHHHHhCC--CccCCceEEE
Q 004002 320 EFYDVRAAEAALKSLNR--SDIAGKRIKL 346 (780)
Q Consensus 320 ~F~~~e~A~~Ai~~LnG--~~i~Gr~L~V 346 (780)
+|++..||+.|.+.|.. ++|.||.|..
T Consensus 218 Tfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 218 TFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 99999999999998864 4777776554
No 199
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=84.25 E-value=1 Score=47.59 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=57.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccc----cccccccc
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPL----RRRKLDIH 262 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l----~gr~I~V~ 262 (780)
..|+|.||..-+..+.|..-|+.||+|+... ..++..+-++|.|...-.|.+|++.+.-.-+ .+++.-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7899999999999999999999999987633 4677888999999999999999998743332 34555554
No 200
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.41 E-value=2.6 Score=40.65 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCCHHHHHH----HhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCCCCCCc-
Q 004002 203 NVEDSELRA----LFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQ- 277 (780)
Q Consensus 203 ~vteeeLr~----lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~- 277 (780)
..+-..|.. ++...|.+.-.. -..++..+.|.+.+++.++++. ....+.+..+.++.-.|...+.+.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~---l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~ 103 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD---LGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHI 103 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE---eCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceecc
Confidence 345555544 444455544322 2468999999999999999983 5566778888887666555444333222
Q ss_pred -cceeecCCCCC-CChhHHHHHhcccCCeeEEEeCC
Q 004002 278 -GTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETP 311 (780)
Q Consensus 278 -~~L~V~NLp~~-vteedL~~~Fs~yG~I~~v~~~g 311 (780)
-=|.|.|||.. ++++-|+++-+.+|++.+++...
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 23667899987 58889999999999999998643
No 201
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=78.86 E-value=7.4 Score=32.70 Aligned_cols=52 Identities=19% Similarity=0.393 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC----CCEEEEE-eCCCcceEEEEEEecHHHHHHHHHHc
Q 004002 193 RTLFVRNINSNVEDSELRALFEQY----GDIRTLY-TACKHRGFVMISYYDIRAARTAMRAL 249 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~y----G~I~sv~-~tgkskG~aFV~F~~~e~A~~Al~~L 249 (780)
.+|+|+++ .+++.++|+.+|..| +.. .|. +.- --|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~-~IEWIdD---tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPF-RIEWIDD---TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCc-eEEEecC---CcEEEEECCHHHHHHHHHcC
Confidence 58999998 458889999999999 432 222 111 12678999999999999865
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.61 E-value=2.8 Score=45.37 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccc-cccccc
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHF 263 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr-~I~V~~ 263 (780)
=|-|=+.|+.-. .-|..+|++||+|.+.. +...-.+-+|.|.+.-+|++||.+ +|+.|.|. .|-|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 345556766544 45678999999999886 455666899999999999999995 88888754 334443
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.41 E-value=1.4 Score=50.13 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=62.6
Q ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 189 EHPSRTLFVRNINSNVE-DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vt-eeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
....+.|-+.-.|.... -++|...|.+||+|..|.+.. +.-.|.|+|.+..+|-+|-+ ..+..|.++.|+|.|-.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34456777777777764 578999999999999987533 34569999999999977777 5899999999999998764
Q ss_pred C
Q 004002 268 D 268 (780)
Q Consensus 268 ~ 268 (780)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=74.81 E-value=2.1 Score=51.85 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=60.4
Q ss_pred ceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc--CCceEEEEecCCC
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI--AGKRIKLEPSRPG 352 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i--~Gr~L~V~~a~~k 352 (780)
+.++.|..-..+-.-|..+|+.||.|.+++.- +.-..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 45666777778888999999999999999753 2235799999999999999999999976 4778889888764
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=72.96 E-value=3.3 Score=42.29 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=44.4
Q ss_pred CHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHcc--CccccccccccccCCCC
Q 004002 205 EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 205 teeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Ln--g~~l~gr~I~V~~a~pk 267 (780)
..+.|+++|..|+.+.....- ++-+=..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999998887632 233447899999999999999999 89999999999998543
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=71.52 E-value=13 Score=31.98 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=35.5
Q ss_pred CCCChhHHHHHhcccCC-----eeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 287 PSVSNEDLRQIFGAYGE-----VKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 287 ~~vteedL~~~Fs~yG~-----I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
..++..+|..++..-+. |-.|++. ..|.||+-.. +.|+.++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35677888888876643 4556664 4688998775 5899999999999999999999875
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.34 E-value=2.9 Score=37.57 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=43.5
Q ss_pred EEEEEecHHHHHHHHHHccCcc--ccccccccccCCCCCCC-----CCCCCCccceeecCCCCCCChhHHHHHh
Q 004002 232 VMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIPKDNP-----SDKDLNQGTLVVFNLDPSVSNEDLRQIF 298 (780)
Q Consensus 232 aFV~F~~~e~A~~Al~~Lng~~--l~gr~I~V~~a~pk~~~-----s~~~~~~~~L~V~NLp~~vteedL~~~F 298 (780)
|.|+|.+..-|++-++. .... +.+..+.|.-..-.... .......++|.|.|||..+++|+|++..
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999998883 3332 44555555432111111 1123456789999999999999998754
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=67.51 E-value=2.7 Score=50.94 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=59.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccc--cccccccccCCCC
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSIPK 267 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l--~gr~I~V~~a~pk 267 (780)
+.++-|.+-..+..-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+.+|+|+++ -|-+.+|.++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4455566667788899999999999998863 34456799999999999999999999986 4778888887654
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=66.69 E-value=39 Score=31.69 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=44.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEE--eC-CCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGD-IRTLY--TA-CKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~-I~sv~--~t-gkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
...+.+-..|..++.++|..+.+.+-+ |..++ .+ ..++=.+.++|.+.++|+.-.+.+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344555555555666777666665543 44444 23 346668999999999999999999999885
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=64.70 E-value=5.9 Score=47.02 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=61.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
...++||+|+-..+.++-++.+...+|.|.+++... |||..|..+..+..|+..++-..++|+.+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445899999999999999999999999999886542 999999999999999999999999988777654
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=62.22 E-value=5.3 Score=47.42 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
.+..++||+||...+.++-++.+...+|-|.+++... |||..|.....+..|+..|....+.+.++.+.-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567999999999999999999999999998876322 999999999999999999998889888776643
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.35 E-value=11 Score=38.30 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=51.5
Q ss_pred ceeecCCCCCC-----ChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEecCCC
Q 004002 279 TLVVFNLDPSV-----SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 352 (780)
Q Consensus 279 ~L~V~NLp~~v-----teedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr-~L~V~~a~~k 352 (780)
++.+.+++..+ .....+.+|.+|-+..-.++. ++.+...|.|.+.+.|+.|...++++.+.|+ .+++-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 45566666544 223344566655544433332 2345578899999999999999999999998 8999999876
Q ss_pred c
Q 004002 353 G 353 (780)
Q Consensus 353 ~ 353 (780)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.12 E-value=31 Score=39.56 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=53.1
Q ss_pred ccceeecCCCCCCChhHHHHHhccc-CCeeEEEe--CCCccc-EEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE--TPHKRH-HKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~y-G~I~~v~~--~g~srG-~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
...|.|-.+|..++-.||..+...+ -.|..+++ ++.... ...|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999998876 45566654 333333 48999999999999999999998874
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=52.48 E-value=48 Score=28.21 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=43.5
Q ss_pred CCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 004002 288 SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (780)
Q Consensus 288 ~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V 346 (780)
.++-++++..+..|+- ..|+.. ..| =||.|.+.++|+++....+|+.+-+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d--~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD--RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec--CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999965 344432 344 489999999999999999999888777665
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.59 E-value=47 Score=39.27 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=60.1
Q ss_pred CCCCCCcEEEEeCCCCC-CCHHHHHHHhhcC----CCEEEEE---------------eCCC-------------------
Q 004002 187 YGEHPSRTLFVRNINSN-VEDSELRALFEQY----GDIRTLY---------------TACK------------------- 227 (780)
Q Consensus 187 ~~e~~s~tLfVgNLp~~-vteeeLr~lF~~y----G~I~sv~---------------~tgk------------------- 227 (780)
.....+++|-|.|+.|+ |..++|..+|..| |.|.+|. ++|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 44567899999999987 7889999998865 5788875 2232
Q ss_pred -----------------c-ceEEEEEEecHHHHHHHHHHccCcccc--ccccccccC
Q 004002 228 -----------------H-RGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFS 264 (780)
Q Consensus 228 -----------------s-kG~aFV~F~~~e~A~~Al~~Lng~~l~--gr~I~V~~a 264 (780)
- .=||.|+|.+++.|.+..+.+.|..+. +..+.++|-
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 127999999999999999999999986 445666653
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=47.34 E-value=47 Score=28.28 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 202 SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 202 ~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
..++-++++..+..|+-. .|.. ...|| ||.|.+.++|+++.+..++..+....|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357789999999999643 3332 22344 79999999999999999999887665543
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.00 E-value=16 Score=39.16 Aligned_cols=77 Identities=17% Similarity=0.357 Sum_probs=49.2
Q ss_pred ccceeecCCCCCC------------ChhHHHHHhcccCCeeEEEe----------CCCc-----ccE---------EEEE
Q 004002 277 QGTLVVFNLDPSV------------SNEDLRQIFGAYGEVKEIRE----------TPHK-----RHH---------KFIE 320 (780)
Q Consensus 277 ~~~L~V~NLp~~v------------teedL~~~Fs~yG~I~~v~~----------~g~s-----rG~---------aFV~ 320 (780)
..+||+.+||-.| +++.|+..|..||.|..|.+ +++. .|| |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 3588888887533 57889999999999988853 3332 233 2455
Q ss_pred EcCHHHHHHHHHHhCCCcc----CC----ceEEEEecCCCc
Q 004002 321 FYDVRAAEAALKSLNRSDI----AG----KRIKLEPSRPGG 353 (780)
Q Consensus 321 F~~~e~A~~Ai~~LnG~~i----~G----r~L~V~~a~~k~ 353 (780)
|-..---..|+.+|.|..+ +| -.++|.+.+.+.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 5544455667777776544 23 256777766543
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.48 E-value=1.6e+02 Score=32.08 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=37.8
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCe-eEEEeCCCcccEEEEEEcCHH
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKFIEFYDVR 325 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I-~~v~~~g~srG~aFV~F~~~e 325 (780)
.-|+++||+.++.-.||+..+.+-|.+ .++.+.|. .+-||..|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~-~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH-FGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecC-CcceeEecCCcc
Confidence 469999999999999999999887655 45566544 577999998854
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.54 E-value=1.3e+02 Score=34.27 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=43.2
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCe-eEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKFIEFYDVRAAEAALK 332 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I-~~v~~~g~srG~aFV~F~~~e~A~~Ai~ 332 (780)
...|-|.++|.....+||...|+.|+.- -.|++. -+-++|-.|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhh
Confidence 3578899999999999999999999652 233332 24579999999999999997
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=26.37 E-value=50 Score=28.27 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhhcCCC-----EEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 202 SNVEDSELRALFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 202 ~~vteeeLr~lF~~yG~-----I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..++..+|..++..-+. |-.++.. ..|+||+-.. +.|+.+++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778888888876654 3445442 3578888654 5889999999999999999998753
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=25.53 E-value=96 Score=33.67 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=37.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEEeCCCcceEEEEEEecHHH
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIRA 241 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~-sv~~tgkskG~aFV~F~~~e~ 241 (780)
.+-|+|+||+.++.-.+|+..+.+-|-+- ++.- ..+.|-||+.|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCccC
Confidence 35699999999999999999998776432 2322 3367889999987543
No 222
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.91 E-value=1.1e+02 Score=33.51 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=37.2
Q ss_pred EEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcc
Q 004002 232 VMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA 300 (780)
Q Consensus 232 aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~ 300 (780)
|||+|.+.++|..|++.+....- +.+.++.|.+. ..|+-.||..+..+..+|.++.-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP----------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP----------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc----------ccccccccCCChHHHHHHHHHHH
Confidence 79999999999999996544332 44566554332 23666777666666666655543
No 223
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=22.81 E-value=1.9e+03 Score=29.10 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=10.9
Q ss_pred CcccCCCcCCCccccccCCCCCCCCCCC
Q 004002 389 NWVQFSSPIEHNPLQTISKSPNFRNMSP 416 (780)
Q Consensus 389 ~~~~~gsp~~~~~~~~~~~s~g~g~~sp 416 (780)
.|.++.+|..++..- .-+++|..-||
T Consensus 1432 p~~~~~~~~sp~~s~--~ssp~~s~tsp 1457 (1605)
T KOG0260|consen 1432 PWSNMSSPASPGSSY--SSSPGYSPTSP 1457 (1605)
T ss_pred cccccCCCCCCCCCC--CCCCCCCCCCC
Confidence 444444444443332 24444444443
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.15 E-value=2.4e+02 Score=33.73 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=55.7
Q ss_pred CccceeecCCCCC-CChhHHHHHhccc----CCeeEEEe---------------CCC-----------------------
Q 004002 276 NQGTLVVFNLDPS-VSNEDLRQIFGAY----GEVKEIRE---------------TPH----------------------- 312 (780)
Q Consensus 276 ~~~~L~V~NLp~~-vteedL~~~Fs~y----G~I~~v~~---------------~g~----------------------- 312 (780)
.++.|-|-||+.+ +..++|..+|..| |.|.+|.| .|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3567999999875 6889999888765 58888853 221
Q ss_pred --------------cccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEec
Q 004002 313 --------------KRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPS 349 (780)
Q Consensus 313 --------------srG~aFV~F~~~e~A~~Ai~~LnG~~i~G--r~L~V~~a 349 (780)
.--||.|+|++.+.|.+.-....|.++.. ..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01279999999999999999999999875 44555443
Done!