Query 004002
Match_columns 780
No_of_seqs 553 out of 3234
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.7E-32 5.9E-37 290.1 22.2 238 114-361 22-273 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 6.4E-32 2.2E-36 286.9 20.0 230 114-352 41-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 8.6E-31 2.9E-35 267.0 16.1 165 190-356 13-185 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 2.4E-29 8.1E-34 242.7 18.4 157 193-351 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 7.9E-29 2.7E-33 240.2 18.8 155 191-349 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 9.9E-29 3.4E-33 238.5 18.6 155 191-349 1-167 (167)
7 2qfj_A FBP-interacting repress 100.0 2.1E-28 7.1E-33 247.2 17.7 163 191-353 27-206 (216)
8 1l3k_A Heterogeneous nuclear r 100.0 2.8E-28 9.6E-33 242.5 17.4 167 188-356 9-187 (196)
9 1fje_B Nucleolin RBD12, protei 100.0 5.7E-29 2E-33 243.7 11.4 161 189-352 10-174 (175)
10 3pgw_A U1-A; protein-RNA compl 100.0 8.5E-28 2.9E-32 253.8 19.8 163 189-351 6-282 (282)
11 2adc_A Polypyrimidine tract-bi 100.0 1.4E-27 4.7E-32 246.0 20.5 163 190-352 32-228 (229)
12 2cjk_A Nuclear polyadenylated 100.0 1.8E-28 6.3E-33 237.7 12.7 155 191-352 2-166 (167)
13 3nmr_A Cugbp ELAV-like family 100.0 1E-27 3.5E-32 233.5 18.1 157 191-350 2-175 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 5.9E-28 2E-32 235.2 15.8 153 191-349 3-171 (172)
15 3tyt_A Heterogeneous nuclear r 100.0 1.1E-27 3.8E-32 243.8 17.0 159 191-349 3-204 (205)
16 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-27 3.6E-32 239.9 15.5 161 192-352 3-197 (198)
17 2yh0_A Splicing factor U2AF 65 99.9 1.4E-27 4.8E-32 237.8 15.6 162 191-354 3-196 (198)
18 3smz_A Protein raver-1, ribonu 99.9 3E-27 1E-31 249.9 17.8 178 191-380 21-211 (284)
19 2ghp_A U4/U6 snRNA-associated 99.9 2.2E-26 7.7E-31 244.2 17.4 182 187-380 36-237 (292)
20 3sde_A Paraspeckle component 1 99.9 1.5E-25 5E-30 235.4 16.2 155 190-355 20-182 (261)
21 4f02_A Polyadenylate-binding p 99.8 9.4E-20 3.2E-24 185.4 11.3 155 114-268 15-182 (213)
22 2i2y_A Fusion protein consists 99.8 1.3E-19 4.4E-24 174.5 11.6 127 226-353 10-149 (150)
23 2qfj_A FBP-interacting repress 99.8 7.4E-19 2.5E-23 177.1 14.9 157 114-270 28-208 (216)
24 2kn4_A Immunoglobulin G-bindin 99.8 6.8E-19 2.3E-23 170.4 13.7 130 225-354 9-152 (158)
25 3md3_A Nuclear and cytoplasmic 99.8 1.1E-18 3.7E-23 167.9 13.3 150 115-265 1-165 (166)
26 1b7f_A Protein (SXL-lethal pro 99.8 1.2E-18 4.1E-23 168.4 13.2 150 115-264 4-168 (168)
27 2cjk_A Nuclear polyadenylated 99.8 2.2E-19 7.6E-24 173.6 7.8 152 115-267 4-166 (167)
28 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 172.3 13.5 157 114-271 13-187 (196)
29 3nmr_A Cugbp ELAV-like family 99.8 1.8E-18 6E-23 168.1 13.4 152 114-265 3-175 (175)
30 1fxl_A Paraneoplastic encephal 99.8 2E-18 6.9E-23 166.1 13.1 150 115-264 3-167 (167)
31 4f25_A Polyadenylate-binding p 99.8 8.2E-19 2.8E-23 161.8 9.6 103 191-293 4-113 (115)
32 1fje_B Nucleolin RBD12, protei 99.8 4.8E-19 1.7E-23 173.0 6.3 154 114-267 13-174 (175)
33 2g4b_A Splicing factor U2AF 65 99.7 1.2E-17 4.1E-22 162.2 11.1 148 114-264 4-171 (172)
34 2yh0_A Splicing factor U2AF 65 99.7 1.5E-17 5.2E-22 165.1 11.7 156 114-269 4-196 (198)
35 2adc_A Polypyrimidine tract-bi 99.7 9.7E-17 3.3E-21 164.9 14.3 149 114-267 34-228 (229)
36 3pgw_A U1-A; protein-RNA compl 99.7 1.2E-16 4.2E-21 168.3 13.7 75 191-265 206-281 (282)
37 1qm9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 159.0 13.0 150 115-267 4-197 (198)
38 4fxv_A ELAV-like protein 1; RN 99.7 1.9E-16 6.5E-21 142.4 9.1 76 191-266 18-98 (99)
39 4fxv_A ELAV-like protein 1; RN 99.6 2.8E-16 9.7E-21 141.3 9.4 75 277-351 19-98 (99)
40 3tyt_A Heterogeneous nuclear r 99.6 2.8E-16 9.4E-21 159.7 10.4 147 115-264 5-204 (205)
41 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-16 3.8E-21 146.8 6.0 102 190-303 6-109 (115)
42 2lea_A Serine/arginine-rich sp 99.6 2.1E-16 7E-21 150.2 7.6 120 230-354 5-129 (135)
43 3s8s_A Histone-lysine N-methyl 99.6 1E-15 3.5E-20 140.4 10.8 84 276-359 5-93 (110)
44 3sde_A Paraspeckle component 1 99.6 1E-15 3.5E-20 160.4 11.3 146 114-268 22-180 (261)
45 4f25_A Polyadenylate-binding p 99.6 1.3E-15 4.6E-20 140.2 9.3 80 277-356 5-87 (115)
46 2hvz_A Splicing factor, argini 99.6 1E-15 3.6E-20 137.0 8.2 95 193-287 1-101 (101)
47 2lxi_A RNA-binding protein 10; 99.6 6.1E-16 2.1E-20 136.8 5.4 80 192-271 1-87 (91)
48 3s8s_A Histone-lysine N-methyl 99.6 2.9E-15 9.8E-20 137.4 9.6 78 190-267 4-86 (110)
49 3lqv_A PRE-mRNA branch site pr 99.6 6.8E-15 2.3E-19 134.8 11.3 103 276-382 7-111 (115)
50 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.9E-15 1E-19 146.6 9.4 122 234-355 11-155 (165)
51 1whw_A Hypothetical protein ri 99.6 6.9E-15 2.3E-19 131.0 11.0 81 190-270 6-91 (99)
52 2dgv_A HnRNP M, heterogeneous 99.6 8.7E-15 3E-19 128.5 11.3 81 190-270 6-89 (92)
53 1whw_A Hypothetical protein ri 99.6 8.3E-15 2.8E-19 130.5 10.9 80 275-354 6-90 (99)
54 1x5u_A Splicing factor 3B subu 99.6 1.2E-14 4.1E-19 130.8 11.8 82 188-269 11-97 (105)
55 2do4_A Squamous cell carcinoma 99.6 1E-14 3.4E-19 130.4 11.0 82 188-269 13-98 (100)
56 1sjq_A Polypyrimidine tract-bi 99.6 7.2E-15 2.4E-19 133.9 10.1 83 189-272 13-97 (105)
57 3md1_A Nuclear and cytoplasmic 99.6 6.1E-15 2.1E-19 126.8 9.2 77 192-268 1-82 (83)
58 2dnz_A Probable RNA-binding pr 99.6 1E-14 3.5E-19 128.8 10.8 81 190-270 3-88 (95)
59 2dgs_A DAZ-associated protein 99.6 1.3E-14 4.3E-19 129.4 11.4 81 189-270 7-92 (99)
60 2dnm_A SRP46 splicing factor; 99.6 8.1E-15 2.8E-19 131.6 10.2 83 188-270 9-96 (103)
61 2do4_A Squamous cell carcinoma 99.6 1.3E-14 4.3E-19 129.7 11.3 81 274-354 14-98 (100)
62 2x1f_A MRNA 3'-END-processing 99.6 6.9E-15 2.3E-19 130.6 9.3 78 191-268 1-83 (96)
63 2lxi_A RNA-binding protein 10; 99.6 1.9E-15 6.3E-20 133.7 5.6 77 278-354 2-85 (91)
64 2dnh_A Bruno-like 5, RNA bindi 99.6 1.8E-14 6.2E-19 129.7 12.1 82 189-270 12-100 (105)
65 2d9p_A Polyadenylate-binding p 99.6 1.3E-14 4.4E-19 130.4 11.0 83 189-271 12-97 (103)
66 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.5E-15 1.9E-19 128.2 8.2 77 191-267 5-86 (87)
67 1x4a_A Splicing factor, argini 99.6 1.8E-14 6.2E-19 130.8 12.0 83 188-270 18-102 (109)
68 2cph_A RNA binding motif prote 99.6 1.8E-14 6E-19 130.1 11.8 83 188-270 11-100 (107)
69 2cq0_A Eukaryotic translation 99.6 1E-14 3.4E-19 131.1 10.0 83 188-270 11-98 (103)
70 2d9p_A Polyadenylate-binding p 99.6 1.4E-14 4.9E-19 130.1 11.0 83 273-355 11-96 (103)
71 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.8E-19 125.2 9.7 76 278-353 2-82 (83)
72 1x5u_A Splicing factor 3B subu 99.6 1.4E-14 4.7E-19 130.5 10.8 81 274-354 12-97 (105)
73 1p27_B RNA-binding protein 8A; 99.6 8.4E-15 2.9E-19 132.1 9.3 80 189-268 20-104 (106)
74 2cph_A RNA binding motif prote 99.6 1.9E-14 6.4E-19 129.9 11.5 82 273-354 11-99 (107)
75 3bs9_A Nucleolysin TIA-1 isofo 99.6 1E-14 3.4E-19 126.6 9.4 77 276-352 5-86 (87)
76 3r27_A HnRNP L, heterogeneous 99.6 7.8E-15 2.7E-19 132.4 8.9 79 189-268 18-98 (100)
77 1x4a_A Splicing factor, argini 99.5 1.7E-14 5.8E-19 131.0 11.1 81 274-354 19-101 (109)
78 2cpf_A RNA binding motif prote 99.5 1.2E-14 4.2E-19 129.1 10.0 81 190-270 3-91 (98)
79 2dgo_A Cytotoxic granule-assoc 99.5 2.1E-14 7.1E-19 131.6 11.7 83 188-270 11-98 (115)
80 3mdf_A Peptidyl-prolyl CIS-tra 99.5 9.6E-15 3.3E-19 126.1 8.9 76 190-265 5-85 (85)
81 1x4h_A RNA-binding protein 28; 99.5 2E-14 6.8E-19 130.6 11.1 83 188-270 11-104 (111)
82 2wbr_A GW182, gawky, LD47780P; 99.5 8.2E-15 2.8E-19 128.7 8.0 73 277-350 7-79 (89)
83 2lkz_A RNA-binding protein 5; 99.5 4.8E-15 1.7E-19 132.6 6.7 76 276-351 8-94 (95)
84 2cqc_A Arginine/serine-rich sp 99.5 2.3E-14 7.9E-19 126.4 11.0 78 274-351 12-94 (95)
85 2cq3_A RNA-binding protein 9; 99.5 2.9E-14 9.8E-19 128.0 11.8 83 188-270 11-96 (103)
86 2cq0_A Eukaryotic translation 99.5 1.9E-14 6.5E-19 129.2 10.6 82 274-355 12-98 (103)
87 2jrs_A RNA-binding protein 39; 99.5 2.1E-14 7E-19 131.0 11.0 81 188-268 22-107 (108)
88 2cqi_A Nucleolysin TIAR; RNA r 99.5 2E-14 7E-19 129.0 10.8 83 188-270 11-96 (103)
89 2cpz_A CUG triplet repeat RNA- 99.5 1.4E-14 4.8E-19 132.9 9.7 81 275-355 23-108 (115)
90 2jvr_A Nucleolar protein 3; RN 99.5 9.4E-15 3.2E-19 134.5 8.5 89 258-353 16-106 (111)
91 2cpz_A CUG triplet repeat RNA- 99.5 1.3E-14 4.5E-19 133.0 9.5 83 188-270 21-108 (115)
92 3p5t_L Cleavage and polyadenyl 99.5 4.3E-15 1.5E-19 130.5 5.9 77 193-269 2-85 (90)
93 2dnz_A Probable RNA-binding pr 99.5 2.3E-14 8E-19 126.5 10.6 79 276-354 4-87 (95)
94 2dhg_A TRNA selenocysteine ass 99.5 3.4E-14 1.2E-18 127.7 11.8 82 189-270 6-93 (104)
95 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.7E-14 5.7E-19 124.6 9.4 75 276-350 6-85 (85)
96 1x5t_A Splicing factor 3B subu 99.5 7.7E-15 2.6E-19 129.8 7.4 81 190-270 3-89 (96)
97 2x1f_A MRNA 3'-END-processing 99.5 2.8E-14 9.6E-19 126.6 11.1 79 277-355 2-85 (96)
98 2dnh_A Bruno-like 5, RNA bindi 99.5 2.7E-14 9.4E-19 128.5 11.1 81 275-355 13-100 (105)
99 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.6E-14 8.9E-19 128.3 10.9 82 274-355 12-96 (103)
100 1x5s_A Cold-inducible RNA-bind 99.5 1.4E-14 4.7E-19 129.8 9.1 81 189-269 9-94 (102)
101 1sjq_A Polypyrimidine tract-bi 99.5 8.1E-15 2.8E-19 133.5 7.5 79 276-355 15-95 (105)
102 2dgs_A DAZ-associated protein 99.5 2.9E-14 9.8E-19 127.1 10.9 80 275-355 8-92 (99)
103 3r27_A HnRNP L, heterogeneous 99.5 1.7E-14 5.8E-19 130.2 9.4 77 276-353 20-98 (100)
104 2dgp_A Bruno-like 4, RNA bindi 99.5 1.8E-14 6.2E-19 129.9 9.7 82 188-269 9-98 (106)
105 2dgo_A Cytotoxic granule-assoc 99.5 2.9E-14 9.9E-19 130.6 11.2 82 274-355 12-98 (115)
106 2kn4_A Immunoglobulin G-bindin 99.5 2.1E-14 7.1E-19 138.8 10.7 82 189-270 67-153 (158)
107 1p27_B RNA-binding protein 8A; 99.5 1.8E-14 6.1E-19 129.9 9.5 80 274-353 20-104 (106)
108 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.2E-14 4.1E-19 130.2 8.2 82 189-270 9-95 (102)
109 2cqc_A Arginine/serine-rich sp 99.5 1.7E-14 5.7E-19 127.2 9.0 78 189-266 12-94 (95)
110 2dnq_A RNA-binding protein 4B; 99.5 2.9E-14 1E-18 125.0 10.4 78 190-270 6-83 (90)
111 2ad9_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 133.9 9.9 86 186-272 25-112 (119)
112 3p5t_L Cleavage and polyadenyl 99.5 5.6E-15 1.9E-19 129.8 5.8 77 278-354 2-85 (90)
113 3pgw_S U1-70K; protein-RNA com 99.5 4.9E-15 1.7E-19 166.9 6.8 145 209-353 9-183 (437)
114 2div_A TRNA selenocysteine ass 99.5 1.8E-14 6.3E-19 128.3 9.1 80 190-269 7-96 (99)
115 2e5h_A Zinc finger CCHC-type a 99.5 3.9E-14 1.3E-18 124.8 11.1 76 275-350 14-94 (94)
116 1oo0_B CG8781-PA, drosophila Y 99.5 2.2E-14 7.5E-19 130.4 9.7 82 274-355 23-109 (110)
117 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.9E-14 6.4E-19 128.9 9.1 81 275-355 10-95 (102)
118 1why_A Hypothetical protein ri 99.5 3.8E-14 1.3E-18 126.0 10.9 78 276-354 16-95 (97)
119 2cq3_A RNA-binding protein 9; 99.5 5.2E-14 1.8E-18 126.4 11.9 82 273-354 11-95 (103)
120 1wf1_A RNA-binding protein RAL 99.5 2E-14 6.8E-19 130.9 9.3 95 255-353 6-101 (110)
121 2e5h_A Zinc finger CCHC-type a 99.5 1.8E-14 6.2E-19 126.9 8.7 77 189-265 13-94 (94)
122 1wex_A Hypothetical protein (r 99.5 4.5E-14 1.6E-18 128.3 11.6 81 188-269 11-93 (104)
123 2dnm_A SRP46 splicing factor; 99.5 2.3E-14 8E-19 128.6 9.6 80 275-354 11-95 (103)
124 2dnq_A RNA-binding protein 4B; 99.5 2.9E-14 9.9E-19 125.0 9.9 77 275-354 6-82 (90)
125 1oo0_B CG8781-PA, drosophila Y 99.5 1.8E-14 6.1E-19 131.0 8.8 81 188-268 22-107 (110)
126 2kxn_B Transformer-2 protein h 99.5 2.6E-14 8.8E-19 134.7 10.2 81 188-268 42-127 (129)
127 1why_A Hypothetical protein ri 99.5 5.5E-14 1.9E-18 124.9 11.7 79 189-268 14-94 (97)
128 4a8x_A RNA-binding protein wit 99.5 2.1E-14 7.3E-19 124.6 8.9 79 276-354 3-87 (88)
129 2cpf_A RNA binding motif prote 99.5 1.8E-14 6.3E-19 128.0 8.6 79 276-354 4-90 (98)
130 1x5s_A Cold-inducible RNA-bind 99.5 1.8E-14 6.1E-19 129.0 8.6 79 276-354 11-94 (102)
131 2lkz_A RNA-binding protein 5; 99.5 7.4E-15 2.5E-19 131.3 6.0 77 190-266 7-94 (95)
132 1x4h_A RNA-binding protein 28; 99.5 5E-14 1.7E-18 127.9 11.6 81 275-355 13-104 (111)
133 2ywk_A Putative RNA-binding pr 99.5 1.8E-14 6E-19 127.3 8.3 78 188-265 12-93 (95)
134 2dgp_A Bruno-like 4, RNA bindi 99.5 2.9E-14 1E-18 128.5 9.9 82 273-354 9-98 (106)
135 2a3j_A U1 small nuclear ribonu 99.5 2.5E-14 8.6E-19 134.7 9.7 80 189-268 26-111 (127)
136 4a8x_A RNA-binding protein wit 99.5 2.5E-14 8.5E-19 124.2 9.0 78 191-268 3-86 (88)
137 1fjc_A Nucleolin RBD2, protein 99.5 1.3E-14 4.3E-19 128.6 7.2 81 189-269 13-93 (96)
138 2cq1_A PTB-like protein L; RRM 99.5 4.4E-14 1.5E-18 127.8 10.9 81 189-270 12-94 (101)
139 2dgv_A HnRNP M, heterogeneous 99.5 2.7E-14 9.1E-19 125.3 9.2 79 276-354 7-88 (92)
140 1fjc_A Nucleolin RBD2, protein 99.5 1.7E-14 5.7E-19 127.8 8.0 82 274-355 13-94 (96)
141 2jrs_A RNA-binding protein 39; 99.5 3.6E-14 1.2E-18 129.4 10.2 80 274-353 23-107 (108)
142 2cq1_A PTB-like protein L; RRM 99.5 5.5E-14 1.9E-18 127.1 11.1 79 275-354 13-93 (101)
143 2khc_A Testis-specific RNP-typ 99.5 3.1E-14 1E-18 131.0 9.6 78 188-265 36-118 (118)
144 1u6f_A Tcubp1, RNA-binding pro 99.5 4.5E-14 1.5E-18 133.6 11.0 83 273-355 38-125 (139)
145 1wi8_A EIF-4B, eukaryotic tran 99.5 4.2E-14 1.4E-18 127.3 10.3 81 188-270 11-97 (104)
146 2dgx_A KIAA0430 protein; RRM d 99.5 3.5E-14 1.2E-18 126.3 9.6 79 276-354 8-92 (96)
147 1x4d_A Matrin 3; structural ge 99.5 2.3E-14 7.8E-19 129.9 8.4 79 189-268 12-93 (102)
148 2e5j_A Methenyltetrahydrofolat 99.5 2.8E-14 9.6E-19 126.9 8.9 79 275-353 17-95 (97)
149 2fy1_A RNA-binding motif prote 99.5 2.9E-14 1E-18 131.6 9.3 81 190-270 5-89 (116)
150 1x4e_A RNA binding motif, sing 99.5 2.5E-14 8.4E-19 123.8 8.2 76 190-265 3-83 (85)
151 1x4d_A Matrin 3; structural ge 99.5 2.2E-14 7.6E-19 130.0 8.3 77 276-353 14-93 (102)
152 1x5t_A Splicing factor 3B subu 99.5 2.1E-14 7.3E-19 127.0 7.8 80 276-355 4-89 (96)
153 2ywk_A Putative RNA-binding pr 99.5 3.6E-14 1.2E-18 125.2 9.3 77 275-351 14-94 (95)
154 2dgt_A RNA-binding protein 30; 99.5 3.7E-14 1.3E-18 124.8 9.3 80 188-270 6-85 (92)
155 2cqd_A RNA-binding region cont 99.5 5.7E-14 1.9E-18 129.0 11.0 82 188-270 13-99 (116)
156 2dh8_A DAZ-associated protein 99.5 3.5E-14 1.2E-18 127.9 9.4 82 188-270 12-98 (105)
157 3ns6_A Eukaryotic translation 99.5 9.8E-15 3.4E-19 131.1 5.7 77 191-267 5-93 (100)
158 2kxn_B Transformer-2 protein h 99.5 4.9E-14 1.7E-18 132.8 10.7 79 275-353 44-127 (129)
159 2err_A Ataxin-2-binding protei 99.5 2.8E-14 9.7E-19 130.1 8.8 81 272-352 24-107 (109)
160 2dgt_A RNA-binding protein 30; 99.5 5.3E-14 1.8E-18 123.8 10.2 78 274-354 7-84 (92)
161 2la6_A RNA-binding protein FUS 99.5 3.3E-14 1.1E-18 126.8 9.0 77 189-265 10-99 (99)
162 2la6_A RNA-binding protein FUS 99.5 5.1E-14 1.8E-18 125.6 10.2 76 275-350 11-99 (99)
163 2dng_A Eukaryotic translation 99.5 5.5E-14 1.9E-18 126.3 10.4 80 189-270 12-96 (103)
164 2jvo_A Nucleolar protein 3; nu 99.5 3.1E-14 1.1E-18 129.9 8.9 79 273-354 27-105 (108)
165 2m2b_A RNA-binding protein 10; 99.5 2.8E-14 9.6E-19 134.3 8.9 83 187-270 18-111 (131)
166 2fc9_A NCL protein; structure 99.5 3.1E-14 1E-18 127.4 8.7 83 188-270 11-94 (101)
167 2la4_A Nuclear and cytoplasmic 99.5 2.6E-14 9E-19 127.8 8.2 76 191-267 26-101 (101)
168 2do0_A HnRNP M, heterogeneous 99.5 7.4E-14 2.5E-18 127.5 11.3 80 189-268 12-95 (114)
169 1wex_A Hypothetical protein (r 99.5 4.8E-14 1.6E-18 128.2 9.8 78 276-354 14-93 (104)
170 2a3j_A U1 small nuclear ribonu 99.5 4.1E-14 1.4E-18 133.2 9.6 81 276-356 28-114 (127)
171 2e5j_A Methenyltetrahydrofolat 99.5 4.4E-14 1.5E-18 125.7 9.3 79 190-268 17-95 (97)
172 2cpe_A RNA-binding protein EWS 99.5 3.7E-14 1.3E-18 129.4 9.0 83 188-270 11-106 (113)
173 3ex7_B RNA-binding protein 8A; 99.5 4.2E-14 1.4E-18 131.6 9.5 83 188-270 18-105 (126)
174 2dnp_A RNA-binding protein 14; 99.5 5E-14 1.7E-18 123.5 9.4 78 274-354 6-83 (90)
175 3ns6_A Eukaryotic translation 99.5 1.3E-14 4.6E-19 130.2 5.8 77 277-353 6-94 (100)
176 2fy1_A RNA-binding motif prote 99.5 4.4E-14 1.5E-18 130.4 9.4 78 276-353 6-87 (116)
177 2krb_A Eukaryotic translation 99.5 4.1E-14 1.4E-18 121.7 8.6 71 192-262 1-81 (81)
178 1u6f_A Tcubp1, RNA-binding pro 99.5 4.5E-14 1.5E-18 133.6 9.7 83 188-270 38-125 (139)
179 2ytc_A PRE-mRNA-splicing facto 99.5 5.1E-14 1.8E-18 121.7 9.2 77 188-265 8-85 (85)
180 2nlw_A Eukaryotic translation 99.5 5.1E-14 1.8E-18 127.4 9.6 80 189-268 12-101 (105)
181 1nu4_A U1A RNA binding domain; 99.5 2.2E-14 7.7E-19 127.1 7.0 80 189-268 5-90 (97)
182 2la4_A Nuclear and cytoplasmic 99.5 3E-14 1E-18 127.5 7.9 76 276-352 26-101 (101)
183 2cpj_A Non-POU domain-containi 99.5 4.3E-14 1.5E-18 126.1 8.9 79 190-269 13-91 (99)
184 2ad9_A Polypyrimidine tract-bi 99.5 3.6E-14 1.2E-18 132.1 8.7 79 276-355 30-110 (119)
185 1wi8_A EIF-4B, eukaryotic tran 99.5 6.1E-14 2.1E-18 126.2 10.0 79 275-355 13-97 (104)
186 2khc_A Testis-specific RNP-typ 99.5 4.9E-14 1.7E-18 129.7 9.4 77 274-350 37-118 (118)
187 2dis_A Unnamed protein product 99.5 6.1E-14 2.1E-18 127.1 9.9 82 190-271 6-96 (109)
188 2wbr_A GW182, gawky, LD47780P; 99.5 2.4E-14 8.1E-19 125.8 6.8 73 191-264 6-78 (89)
189 1p1t_A Cleavage stimulation fa 99.5 1.3E-14 4.6E-19 130.2 5.4 79 190-268 6-89 (104)
190 1p1t_A Cleavage stimulation fa 99.5 4.1E-14 1.4E-18 126.9 8.6 81 276-356 7-92 (104)
191 2cpj_A Non-POU domain-containi 99.5 6.5E-14 2.2E-18 124.9 9.7 78 275-353 13-90 (99)
192 2err_A Ataxin-2-binding protei 99.5 2.9E-14 9.8E-19 130.1 7.5 80 188-267 25-107 (109)
193 2xnq_A Nuclear polyadenylated 99.5 8.2E-14 2.8E-18 124.4 10.3 76 275-353 20-96 (97)
194 2fc8_A NCL protein; structure 99.5 5.7E-14 1.9E-18 125.7 9.1 83 188-270 11-95 (102)
195 2ytc_A PRE-mRNA-splicing facto 99.5 7E-14 2.4E-18 120.8 9.4 76 274-350 9-85 (85)
196 2cpe_A RNA-binding protein EWS 99.5 5.5E-14 1.9E-18 128.3 9.2 82 274-355 12-106 (113)
197 2cq4_A RNA binding motif prote 99.5 2E-14 6.7E-19 131.6 6.2 79 275-354 23-106 (114)
198 3ulh_A THO complex subunit 4; 99.5 5.7E-14 2E-18 126.8 9.1 77 189-265 26-106 (107)
199 3ucg_A Polyadenylate-binding p 99.5 5E-14 1.7E-18 122.6 8.4 76 191-267 5-85 (89)
200 2dhg_A TRNA selenocysteine ass 99.5 4.8E-14 1.7E-18 126.7 8.5 80 276-355 8-93 (104)
201 1x4g_A Nucleolysin TIAR; struc 99.5 5.8E-14 2E-18 127.6 9.1 79 275-354 23-101 (109)
202 2cpx_A Hypothetical protein FL 99.5 4.6E-14 1.6E-18 129.1 8.5 82 189-270 22-108 (115)
203 2cpi_A CCR4-NOT transcription 99.5 6.9E-14 2.4E-18 127.8 9.5 81 273-353 11-102 (111)
204 3ex7_B RNA-binding protein 8A; 99.5 5.9E-14 2E-18 130.6 9.2 81 275-355 20-105 (126)
205 2dgu_A Heterogeneous nuclear r 99.5 6.6E-14 2.3E-18 125.9 9.2 77 276-355 10-86 (103)
206 2cpd_A Apobec-1 stimulating pr 99.5 1.3E-13 4.5E-18 122.9 11.1 77 275-354 13-91 (99)
207 2dgu_A Heterogeneous nuclear r 99.5 8.4E-14 2.9E-18 125.2 9.9 78 190-270 9-86 (103)
208 3ucg_A Polyadenylate-binding p 99.5 6.5E-14 2.2E-18 122.0 8.8 76 276-352 5-85 (89)
209 2fc9_A NCL protein; structure 99.5 5.1E-14 1.8E-18 125.9 8.4 81 274-354 12-93 (101)
210 2dgx_A KIAA0430 protein; RRM d 99.5 4.9E-14 1.7E-18 125.4 8.2 80 191-270 8-93 (96)
211 2do0_A HnRNP M, heterogeneous 99.5 1.2E-13 4E-18 126.2 10.9 79 275-353 13-95 (114)
212 2lea_A Serine/arginine-rich sp 99.5 2.4E-14 8.3E-19 135.8 6.5 84 188-271 43-131 (135)
213 2dng_A Eukaryotic translation 99.5 1.1E-13 3.7E-18 124.4 10.5 78 275-354 13-95 (103)
214 2kvi_A Nuclear polyadenylated 99.5 5.3E-14 1.8E-18 125.0 8.3 78 190-270 8-86 (96)
215 2cqd_A RNA-binding region cont 99.5 9.1E-14 3.1E-18 127.6 10.2 80 273-353 13-97 (116)
216 2dnp_A RNA-binding protein 14; 99.5 8.5E-14 2.9E-18 122.0 9.5 78 189-269 6-83 (90)
217 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.3E-14 1.5E-18 126.7 7.8 78 189-268 16-99 (100)
218 2div_A TRNA selenocysteine ass 99.5 5.2E-14 1.8E-18 125.3 8.2 78 276-353 8-95 (99)
219 2fc8_A NCL protein; structure 99.5 1E-13 3.5E-18 124.0 10.1 84 272-355 10-95 (102)
220 1x4c_A Splicing factor, argini 99.5 1.2E-13 4.2E-18 125.4 10.7 80 189-270 12-96 (108)
221 1x5o_A RNA binding motif, sing 99.5 1.4E-13 4.8E-18 125.8 11.2 79 189-267 22-112 (114)
222 2nlw_A Eukaryotic translation 99.5 7.2E-14 2.4E-18 126.5 9.0 78 275-352 13-100 (105)
223 2xnq_A Nuclear polyadenylated 99.5 9.6E-14 3.3E-18 124.0 9.7 76 189-267 19-95 (97)
224 2cqp_A RNA-binding protein 12; 99.5 6.3E-14 2.2E-18 124.5 8.5 78 275-352 13-95 (98)
225 1x4c_A Splicing factor, argini 99.5 8.7E-14 3E-18 126.4 9.5 77 276-354 14-95 (108)
226 1x4f_A Matrin 3; structural ge 99.5 3.6E-14 1.2E-18 130.8 6.9 80 189-269 22-104 (112)
227 1x4g_A Nucleolysin TIAR; struc 99.5 1E-13 3.4E-18 126.0 9.8 80 190-270 23-102 (109)
228 1whx_A Hypothetical protein ri 99.5 6.4E-14 2.2E-18 128.3 8.6 76 276-352 9-84 (111)
229 1nu4_A U1A RNA binding domain; 99.5 5.4E-14 1.8E-18 124.6 7.8 80 276-355 7-92 (97)
230 2kvi_A Nuclear polyadenylated 99.5 5.7E-14 2E-18 124.8 8.0 77 275-354 8-85 (96)
231 2cpx_A Hypothetical protein FL 99.5 7.4E-14 2.5E-18 127.7 8.8 81 275-355 23-108 (115)
232 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.1E-13 3.8E-18 133.8 10.5 80 276-355 38-122 (156)
233 2cpi_A CCR4-NOT transcription 99.5 4.9E-14 1.7E-18 128.8 7.6 79 190-268 13-102 (111)
234 2cqp_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 126.1 6.5 79 189-267 12-95 (98)
235 2kt5_A RNA and export factor-b 99.5 2.5E-13 8.5E-18 126.3 12.5 79 275-353 33-115 (124)
236 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.1E-14 1.7E-18 126.2 7.5 77 275-353 17-99 (100)
237 1whx_A Hypothetical protein ri 99.5 4.4E-14 1.5E-18 129.4 7.1 77 190-267 8-84 (111)
238 2cpd_A Apobec-1 stimulating pr 99.5 2E-13 6.8E-18 121.8 11.2 77 190-269 13-91 (99)
239 2hvz_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 127.0 6.4 76 278-353 1-76 (101)
240 2cqh_A IGF-II mRNA-binding pro 99.5 4E-14 1.4E-18 124.7 6.5 77 276-354 7-85 (93)
241 3ulh_A THO complex subunit 4; 99.5 1.3E-13 4.3E-18 124.6 9.9 75 276-350 28-106 (107)
242 2jvo_A Nucleolar protein 3; nu 99.5 6.2E-14 2.1E-18 127.9 7.9 79 188-269 27-105 (108)
243 1x4f_A Matrin 3; structural ge 99.5 6.1E-14 2.1E-18 129.2 7.9 78 276-354 24-104 (112)
244 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.4E-19 134.1 3.9 77 276-353 35-116 (124)
245 2jvr_A Nucleolar protein 3; RN 99.5 4.3E-14 1.5E-18 130.0 6.8 77 191-267 27-105 (111)
246 3s7r_A Heterogeneous nuclear r 99.5 8.1E-14 2.8E-18 121.1 8.2 75 189-264 8-87 (87)
247 3n9u_C Cleavage and polyadenyl 99.5 6.8E-14 2.3E-18 136.2 8.5 78 276-353 54-138 (156)
248 2cqh_A IGF-II mRNA-binding pro 99.5 4.7E-14 1.6E-18 124.3 6.7 79 190-270 6-86 (93)
249 2dh8_A DAZ-associated protein 99.5 9E-14 3.1E-18 125.2 8.6 80 274-354 13-97 (105)
250 1s79_A Lupus LA protein; RRM, 99.5 1E-13 3.5E-18 125.6 9.0 78 274-352 8-89 (103)
251 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.4E-13 4.9E-18 133.0 10.5 80 190-269 37-121 (156)
252 1s79_A Lupus LA protein; RRM, 99.5 6.9E-14 2.4E-18 126.7 7.7 76 190-266 9-88 (103)
253 1x5p_A Negative elongation fac 99.5 2E-13 6.8E-18 121.4 10.5 77 275-354 13-89 (97)
254 2ek1_A RNA-binding protein 12; 99.5 2.9E-14 9.8E-19 125.9 5.0 76 190-265 13-93 (95)
255 2mss_A Protein (musashi1); RNA 99.5 6.6E-14 2.3E-18 118.2 6.9 70 279-349 1-75 (75)
256 3s7r_A Heterogeneous nuclear r 99.5 1.4E-13 4.8E-18 119.5 9.2 75 274-349 8-87 (87)
257 3n9u_C Cleavage and polyadenyl 99.5 6.9E-14 2.3E-18 136.2 8.0 77 191-267 54-137 (156)
258 2i2y_A Fusion protein consists 99.5 1.6E-13 5.6E-18 131.7 10.5 80 189-268 70-149 (150)
259 2ki2_A SS-DNA binding protein 99.5 2.4E-14 8.2E-19 125.2 4.2 76 193-269 2-82 (90)
260 1x5o_A RNA binding motif, sing 99.5 2.3E-13 7.8E-18 124.4 10.9 78 275-352 23-112 (114)
261 2cqg_A TDP-43, TAR DNA-binding 99.5 2.2E-13 7.7E-18 122.2 10.6 81 188-270 11-96 (103)
262 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.8E-18 130.6 9.0 76 278-353 29-107 (130)
263 2rs2_A Musashi-1, RNA-binding 99.5 1.2E-13 4E-18 126.1 8.8 81 274-355 22-107 (109)
264 2dgw_A Probable RNA-binding pr 99.5 1.1E-13 3.7E-18 121.4 8.3 78 189-268 7-88 (91)
265 2m2b_A RNA-binding protein 10; 99.5 5.2E-14 1.8E-18 132.5 6.6 79 274-353 20-109 (131)
266 1x5p_A Negative elongation fac 99.5 2.9E-13 9.8E-18 120.4 11.1 79 189-270 12-90 (97)
267 2ek1_A RNA-binding protein 12; 99.5 5.5E-14 1.9E-18 124.1 6.3 76 276-351 14-94 (95)
268 2mss_A Protein (musashi1); RNA 99.5 5.4E-14 1.8E-18 118.8 5.8 70 194-264 1-75 (75)
269 2rs2_A Musashi-1, RNA-binding 99.5 9.5E-14 3.3E-18 126.7 7.9 80 189-269 22-106 (109)
270 1wf1_A RNA-binding protein RAL 99.5 1.3E-13 4.3E-18 125.5 8.7 76 190-268 25-101 (110)
271 1x4e_A RNA binding motif, sing 99.5 4E-14 1.4E-18 122.5 5.1 76 276-351 4-84 (85)
272 1x4b_A Heterogeneous nuclear r 99.5 7.5E-14 2.6E-18 128.1 7.2 79 275-354 25-108 (116)
273 2krb_A Eukaryotic translation 99.4 5.9E-14 2E-18 120.7 6.0 69 278-346 2-80 (81)
274 2kt5_A RNA and export factor-b 99.4 1.3E-13 4.6E-18 128.1 8.8 81 189-269 32-116 (124)
275 2dis_A Unnamed protein product 99.4 1.5E-13 5.3E-18 124.4 8.8 79 276-354 7-94 (109)
276 1wg5_A Heterogeneous nuclear r 99.4 2.5E-13 8.7E-18 122.6 10.1 78 190-268 13-95 (104)
277 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.7E-13 5.7E-18 129.3 9.3 77 188-264 59-140 (140)
278 1fj7_A Nucleolin RBD1, protein 99.4 6.3E-14 2.1E-18 125.4 5.9 79 190-269 15-97 (101)
279 1wg1_A KIAA1579 protein, homol 99.4 1.2E-13 4.2E-18 120.7 7.6 76 276-353 4-79 (88)
280 2dgw_A Probable RNA-binding pr 99.4 2.4E-13 8.2E-18 119.2 9.1 77 275-353 8-88 (91)
281 2ki2_A SS-DNA binding protein 99.4 4.6E-14 1.6E-18 123.5 4.3 75 278-353 2-81 (90)
282 1uaw_A Mouse-musashi-1; RNP-ty 99.4 5.1E-14 1.8E-18 119.2 4.4 71 193-264 1-76 (77)
283 1sjr_A Polypyrimidine tract-bi 99.4 2.2E-13 7.6E-18 133.3 9.2 77 277-353 46-125 (164)
284 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 3.8E-13 1.3E-17 126.8 10.6 76 274-349 60-140 (140)
285 2e44_A Insulin-like growth fac 99.4 3.7E-13 1.3E-17 119.1 9.8 78 276-353 14-93 (96)
286 1fj7_A Nucleolin RBD1, protein 99.4 7.4E-14 2.5E-18 124.9 5.2 80 275-355 15-98 (101)
287 1wg1_A KIAA1579 protein, homol 99.4 9.7E-14 3.3E-18 121.3 5.7 76 190-267 3-78 (88)
288 2jwn_A Embryonic polyadenylate 99.4 2.6E-13 9E-18 125.8 9.0 77 191-268 35-116 (124)
289 3zzy_A Polypyrimidine tract-bi 99.4 3.5E-13 1.2E-17 127.2 9.7 78 193-270 29-109 (130)
290 2cqg_A TDP-43, TAR DNA-binding 99.4 5.6E-13 1.9E-17 119.6 10.6 79 274-354 12-95 (103)
291 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.3E-13 4.4E-18 116.8 6.0 71 278-349 1-76 (77)
292 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.5E-13 8.7E-18 132.8 9.0 82 188-269 68-154 (165)
293 2hgl_A HNRPF protein, heteroge 99.4 1.4E-13 4.9E-18 131.1 6.9 77 276-353 43-126 (136)
294 2e5i_A Heterogeneous nuclear r 99.4 4E-13 1.4E-17 126.0 9.7 75 278-353 26-103 (124)
295 2e44_A Insulin-like growth fac 99.4 5.2E-13 1.8E-17 118.1 9.9 79 190-268 13-93 (96)
296 1sjr_A Polypyrimidine tract-bi 99.4 4.5E-13 1.5E-17 131.2 10.3 80 191-270 45-127 (164)
297 3egn_A RNA-binding protein 40; 99.4 2.2E-13 7.5E-18 129.8 7.9 80 190-269 43-132 (143)
298 2cq4_A RNA binding motif prote 99.4 1.2E-13 4E-18 126.4 5.8 77 190-267 23-104 (114)
299 1x4b_A Heterogeneous nuclear r 99.4 1.8E-13 6.1E-18 125.6 7.0 79 191-270 26-109 (116)
300 1wg5_A Heterogeneous nuclear r 99.4 6.4E-13 2.2E-17 120.0 10.5 78 275-353 13-95 (104)
301 2diu_A KIAA0430 protein; struc 99.4 5.8E-13 2E-17 118.2 9.8 75 191-270 7-87 (96)
302 3d2w_A TAR DNA-binding protein 99.4 5.6E-13 1.9E-17 117.3 9.2 76 275-354 9-86 (89)
303 2cq2_A Hypothetical protein LO 99.4 3.8E-13 1.3E-17 124.3 8.2 78 189-267 22-106 (114)
304 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.7E-17 115.3 11.6 80 190-270 6-85 (94)
305 2hgn_A Heterogeneous nuclear r 99.4 1.2E-13 4.2E-18 132.0 5.1 121 229-354 1-125 (139)
306 2cpy_A RNA-binding protein 12; 99.4 2.4E-13 8.3E-18 124.8 6.9 79 275-354 13-96 (114)
307 1wez_A HnRNP H', FTP-3, hetero 99.4 3.5E-13 1.2E-17 121.7 7.5 78 189-268 12-93 (102)
308 2cq2_A Hypothetical protein LO 99.4 3.5E-13 1.2E-17 124.4 7.6 77 276-353 24-107 (114)
309 3beg_B Splicing factor, argini 99.4 5.3E-13 1.8E-17 122.9 8.6 75 276-352 15-94 (115)
310 2e5g_A U6 snRNA-specific termi 99.4 6.7E-13 2.3E-17 117.3 8.6 77 276-353 7-83 (94)
311 3d2w_A TAR DNA-binding protein 99.4 6.5E-13 2.2E-17 116.9 8.2 75 190-268 9-85 (89)
312 2diu_A KIAA0430 protein; struc 99.4 8E-13 2.7E-17 117.3 8.7 73 277-354 9-86 (96)
313 2lcw_A RNA-binding protein FUS 99.1 3.5E-14 1.2E-18 130.5 0.0 82 189-270 4-98 (116)
314 2db1_A Heterogeneous nuclear r 99.4 3.8E-13 1.3E-17 124.5 6.8 76 276-352 16-98 (118)
315 1wez_A HnRNP H', FTP-3, hetero 99.4 4.9E-13 1.7E-17 120.7 7.3 76 276-353 14-93 (102)
316 1wel_A RNA-binding protein 12; 99.4 2.3E-13 7.9E-18 126.7 4.9 77 276-353 24-105 (124)
317 1wel_A RNA-binding protein 12; 99.4 1.3E-13 4.3E-18 128.5 3.1 76 190-266 23-103 (124)
318 2xs2_A Deleted in azoospermia- 99.4 1.7E-13 5.8E-18 122.7 3.8 78 190-269 7-88 (102)
319 1iqt_A AUF1, heterogeneous nuc 99.4 1.9E-13 6.6E-18 115.2 3.9 70 194-264 1-75 (75)
320 2e5i_A Heterogeneous nuclear r 99.4 1.3E-12 4.4E-17 122.5 9.9 75 194-269 27-104 (124)
321 2cpy_A RNA-binding protein 12; 99.4 1.4E-13 4.9E-18 126.3 3.3 78 189-267 12-94 (114)
322 3egn_A RNA-binding protein 40; 99.4 7.8E-13 2.7E-17 125.9 8.5 80 276-355 44-133 (143)
323 3q2s_C Cleavage and polyadenyl 99.4 4.5E-13 1.5E-17 138.4 7.1 79 276-354 67-152 (229)
324 2lmi_A GRSF-1, G-rich sequence 99.4 4.3E-13 1.5E-17 121.8 6.1 78 275-353 9-93 (107)
325 1iqt_A AUF1, heterogeneous nuc 99.4 3E-13 1E-17 114.0 4.6 70 279-349 1-75 (75)
326 3q2s_C Cleavage and polyadenyl 99.4 4.7E-13 1.6E-17 138.3 7.0 76 191-266 67-149 (229)
327 2lcw_A RNA-binding protein FUS 99.1 6E-14 2.1E-18 128.9 0.0 80 275-354 5-97 (116)
328 2dnn_A RNA-binding protein 12; 99.4 1E-12 3.4E-17 120.4 8.0 73 277-351 16-92 (109)
329 2db1_A Heterogeneous nuclear r 99.4 5.5E-13 1.9E-17 123.4 6.1 76 190-266 15-97 (118)
330 2lmi_A GRSF-1, G-rich sequence 99.4 4.8E-13 1.7E-17 121.4 5.6 76 190-266 9-91 (107)
331 1wf0_A TDP-43, TAR DNA-binding 99.4 4.4E-13 1.5E-17 116.9 5.1 79 190-270 3-81 (88)
332 3beg_B Splicing factor, argini 99.3 1.4E-12 4.7E-17 120.1 8.3 72 190-263 14-85 (115)
333 2hgl_A HNRPF protein, heteroge 99.3 4.4E-13 1.5E-17 127.7 4.9 76 190-266 42-124 (136)
334 2voo_A Lupus LA protein; RNA-b 99.3 2.1E-12 7.2E-17 129.9 10.0 115 238-353 63-188 (193)
335 2hzc_A Splicing factor U2AF 65 99.3 1.3E-12 4.3E-17 113.2 7.3 72 190-263 4-86 (87)
336 2bz2_A Negative elongation fac 99.3 1.7E-12 5.9E-17 120.9 8.4 76 276-354 38-113 (121)
337 3u1l_A PRE-mRNA-splicing facto 99.3 2.4E-12 8.1E-17 133.7 10.1 104 251-355 108-232 (240)
338 1wf0_A TDP-43, TAR DNA-binding 99.3 7.4E-13 2.5E-17 115.5 5.2 75 276-354 4-80 (88)
339 2f3j_A RNA and export factor b 99.3 1.5E-12 5.2E-17 129.2 8.2 78 190-267 86-167 (177)
340 2hzc_A Splicing factor U2AF 65 99.3 2.2E-12 7.6E-17 111.6 8.1 71 276-348 5-86 (87)
341 2hgn_A Heterogeneous nuclear r 99.3 7.6E-13 2.6E-17 126.5 5.4 78 189-268 43-124 (139)
342 2xs2_A Deleted in azoospermia- 99.3 7.9E-13 2.7E-17 118.4 4.8 78 275-354 7-88 (102)
343 2f3j_A RNA and export factor b 99.3 3.3E-12 1.1E-16 126.8 9.7 78 276-353 87-168 (177)
344 2bz2_A Negative elongation fac 99.3 2.3E-12 7.9E-17 120.0 7.7 77 190-269 37-113 (121)
345 2dnn_A RNA-binding protein 12; 99.3 9.5E-13 3.2E-17 120.6 4.9 74 191-266 15-92 (109)
346 2hgm_A HNRPF protein, heteroge 99.3 2.3E-12 8E-17 121.1 7.4 75 190-266 40-120 (126)
347 2dha_A FLJ20171 protein; RRM d 99.3 1.2E-12 4.3E-17 122.4 5.0 77 276-353 22-106 (123)
348 2dnl_A Cytoplasmic polyadenyla 99.3 4.4E-12 1.5E-16 116.4 7.7 71 190-263 6-84 (114)
349 2dha_A FLJ20171 protein; RRM d 99.3 1.4E-12 4.7E-17 122.2 4.3 76 190-266 21-104 (123)
350 3u1l_A PRE-mRNA-splicing facto 99.3 4.1E-12 1.4E-16 131.9 7.9 82 189-271 131-233 (240)
351 2hgm_A HNRPF protein, heteroge 99.3 3.9E-12 1.3E-16 119.6 6.1 75 276-352 41-121 (126)
352 2dnl_A Cytoplasmic polyadenyla 99.2 1.4E-11 4.7E-16 113.1 8.8 76 276-354 7-90 (114)
353 2j8a_A Histone-lysine N-methyl 99.2 7.1E-12 2.4E-16 117.4 6.9 77 278-354 3-98 (136)
354 2pe8_A Splicing factor 45; RRM 99.2 1.9E-11 6.6E-16 111.1 9.4 76 276-351 7-93 (105)
355 2dit_A HIV TAT specific factor 99.2 2.6E-11 9E-16 110.9 10.3 79 275-353 13-103 (112)
356 3pgw_S U1-70K; protein-RNA com 99.2 1.3E-11 4.4E-16 139.1 9.8 79 190-268 100-183 (437)
357 2dit_A HIV TAT specific factor 99.2 2.8E-11 9.7E-16 110.7 10.2 82 188-269 11-104 (112)
358 2pe8_A Splicing factor 45; RRM 99.2 3.2E-11 1.1E-15 109.6 8.8 77 190-266 6-93 (105)
359 2j8a_A Histone-lysine N-methyl 99.2 1.4E-11 4.8E-16 115.4 4.4 73 193-265 3-94 (136)
360 2voo_A Lupus LA protein; RNA-b 99.2 4.5E-11 1.5E-15 120.1 8.2 75 191-266 108-186 (193)
361 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4.1E-15 105.8 8.7 77 276-352 4-97 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.1 1E-10 3.4E-15 105.5 7.8 67 286-354 26-92 (100)
363 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.9E-10 1.3E-14 101.7 11.5 75 192-268 10-91 (100)
364 1jmt_A Splicing factor U2AF 35 99.1 4.7E-11 1.6E-15 108.3 3.2 68 282-349 20-103 (104)
365 3v4m_A Splicing factor U2AF 65 99.0 2.5E-10 8.5E-15 103.7 7.5 77 190-266 3-96 (105)
366 3tht_A Alkylated DNA repair pr 99.0 2.9E-10 1E-14 123.9 8.6 74 276-350 17-97 (345)
367 1jmt_A Splicing factor U2AF 35 99.0 7.9E-11 2.7E-15 106.8 3.1 68 197-264 20-103 (104)
368 3tht_A Alkylated DNA repair pr 99.0 3.6E-10 1.2E-14 123.2 8.3 75 189-264 15-96 (345)
369 3s6e_A RNA-binding protein 39; 99.0 1.2E-09 4E-14 100.9 8.7 76 276-351 6-92 (114)
370 3ue2_A Poly(U)-binding-splicin 98.9 1E-09 3.5E-14 101.8 7.6 76 276-351 19-108 (118)
371 3ue2_A Poly(U)-binding-splicin 98.9 1.4E-09 4.8E-14 101.0 8.1 75 191-265 19-107 (118)
372 3s6e_A RNA-binding protein 39; 98.8 7.8E-09 2.7E-13 95.3 7.5 76 190-265 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.7 2.3E-08 8E-13 87.9 7.8 73 276-352 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.6 1.2E-07 4E-12 88.3 10.4 86 276-363 17-106 (121)
375 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 4.9E-12 83.4 5.9 73 275-351 13-94 (95)
376 1uw4_A UPF3X; nonsense mediate 98.4 5E-07 1.7E-11 79.8 7.9 66 695-762 2-69 (91)
377 3dxb_A Thioredoxin N-terminall 98.4 5.1E-07 1.7E-11 91.8 7.7 63 289-351 141-212 (222)
378 1owx_A Lupus LA protein, SS-B, 98.4 1.2E-06 4E-11 81.5 9.1 72 191-263 17-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.3 6.2E-07 2.1E-11 78.9 6.4 73 191-267 6-86 (91)
380 2l08_A Regulator of nonsense t 98.3 2.1E-07 7.2E-12 82.8 3.2 75 695-776 10-86 (97)
381 3dxb_A Thioredoxin N-terminall 98.2 1.8E-06 6.1E-11 87.7 7.0 62 204-265 141-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.2 3.8E-06 1.3E-10 75.9 7.6 73 276-349 20-97 (117)
383 1ufw_A Synaptojanin 2; RNP dom 98.0 4.1E-06 1.4E-10 74.1 4.5 71 191-265 14-93 (95)
384 2l9w_A U4/U6 snRNA-associated- 97.6 0.00011 3.7E-09 66.5 6.4 71 191-262 20-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.5 0.0005 1.7E-08 61.6 10.6 88 191-290 7-99 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.3 0.00057 1.9E-08 61.3 7.8 83 277-363 8-95 (104)
387 1wey_A Calcipressin 1; structu 97.0 0.00056 1.9E-08 61.5 4.4 75 278-353 6-85 (104)
388 1wey_A Calcipressin 1; structu 96.5 0.0033 1.1E-07 56.5 5.9 77 191-268 4-85 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.4 0.0073 2.5E-07 55.6 7.8 76 274-352 21-97 (119)
390 1uw4_A UPF3X; nonsense mediate 95.7 0.027 9.2E-07 49.5 7.4 65 193-257 2-73 (91)
391 1whv_A Poly(A)-specific ribonu 95.6 0.021 7.1E-07 50.7 6.5 54 278-335 17-70 (100)
392 3ctr_A Poly(A)-specific ribonu 94.9 0.018 6.1E-07 51.2 3.9 54 278-335 7-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 93.6 0.16 5.5E-06 46.7 7.3 71 191-264 23-94 (119)
394 3p3d_A Nucleoporin 53; structu 92.9 0.078 2.7E-06 49.5 4.2 73 277-351 7-98 (132)
395 1whv_A Poly(A)-specific ribonu 92.5 0.19 6.4E-06 44.6 5.9 55 192-250 16-70 (100)
396 2l08_A Regulator of nonsense t 92.1 0.16 5.5E-06 45.0 5.0 67 191-257 8-81 (97)
397 3ctr_A Poly(A)-specific ribonu 91.6 0.17 5.7E-06 45.0 4.4 53 193-250 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 91.5 0.076 2.6E-06 59.8 2.8 56 277-333 53-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 90.1 0.11 3.9E-06 58.3 2.6 57 191-248 52-108 (464)
400 3p3d_A Nucleoporin 53; structu 88.1 0.23 7.7E-06 46.4 2.6 71 192-264 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 71.0 8.1 0.00028 43.9 8.1 54 278-335 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 58.2 19 0.00065 40.8 7.9 55 193-251 441-495 (507)
403 2qih_A Protein USPA1; trimeric 22.1 20 0.00068 33.3 0.2 16 551-566 2-17 (157)
404 2ls0_1 Zoocin A endopeptidase; 21.0 58 0.002 29.6 2.9 14 551-564 2-15 (128)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.7e-32 Score=290.10 Aligned_cols=238 Identities=16% Similarity=0.231 Sum_probs=199.6
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcEEEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPYGE 189 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~~~~e 189 (780)
.+.++|++||.++++.+++++|+.+|-+.+.. ...+|++++.|.+...|.. +++..+.+....+.. .
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-----~ 92 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-----Q 92 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-----C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-----c
Confidence 46899999999999999999999999334443 4567899999998766642 233334433333222 2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
...++|||+|||+++|+++|+++|++||.|..++ .+++++|||||+|.+.++|.+|++.|+|..+.|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3568999999999999999999999999999886 26789999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccceeecCCCCCC-ChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCcc
Q 004002 265 IPKDNPSDKDLNQGTLVVFNLDPSV-SNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (780)
Q Consensus 265 ~pk~~~s~~~~~~~~L~V~NLp~~v-teedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i 339 (780)
.++.... ......+|||+|||.++ ++++|+++|++||.|..|++ ++.++|+|||+|.+.++|.+|++.|||..+
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 33456789999999996 99999999999999999875 456789999999999999999999999999
Q ss_pred CCceEEEEecCCCchhhhHhhh
Q 004002 340 AGKRIKLEPSRPGGARRNLMLQ 361 (780)
Q Consensus 340 ~Gr~L~V~~a~~k~~r~~~l~q 361 (780)
.|++|+|.++.++..++..+.+
T Consensus 252 ~g~~l~v~~a~~~~~~~~~~~~ 273 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRSMLAA 273 (284)
T ss_dssp TTEECEEEECCSSSCHHHHHHH
T ss_pred CCeEEEEEEecCCCcccchhhh
Confidence 9999999999999877654443
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=6.4e-32 Score=286.85 Aligned_cols=230 Identities=18% Similarity=0.287 Sum_probs=188.3
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCccc---ccccCCCCcccCCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLL---HYSVPNGAGTVAGEHPY 187 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~~---~~~l~n~~~k~~g~~~~ 187 (780)
.+.++|++||.++++.+++++|+.+|.| .|..+... .++++++.|.+...|..+. +..+.+....+..
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~---- 114 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH---- 114 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE----
Confidence 4789999999999999999999999997 44444432 4799999999887665332 2223222222221
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG-~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...++|||+|||+++++++|+++|++|| +|..|+. .++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 115 --~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 115 --LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred --CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 2578999999999999999999999999 9999873 36789999999999999999999999999999999999
Q ss_pred cCCCCCCCCC---CCCCccceeecCCCCC-CChhHHHHHhcccCCeeEEEeC------CCcccEEEEEEcCHHHHHHHHH
Q 004002 263 FSIPKDNPSD---KDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALK 332 (780)
Q Consensus 263 ~a~pk~~~s~---~~~~~~~L~V~NLp~~-vteedL~~~Fs~yG~I~~v~~~------g~srG~aFV~F~~~e~A~~Ai~ 332 (780)
++.+...... ......+|||+|||.+ +++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 9987654332 2334579999999999 9999999999999999999862 677899999999999999999
Q ss_pred HhCCCccCCceEEEEecCCC
Q 004002 333 SLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 333 ~LnG~~i~Gr~L~V~~a~~k 352 (780)
.|||..+.|++|+|.+++++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999886
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=8.6e-31 Score=267.03 Aligned_cols=165 Identities=19% Similarity=0.351 Sum_probs=147.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||+++|+++|+++|++||+|.+|+. +++++|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46789999999999999999999999999999872 5889999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 265 ~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
...... ......+|||+|||.++|+++|+++|++||.|+.|++ .+.++|||||+|.+.++|++||+.|||..|.|
T Consensus 93 ~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 93 QRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 654321 2224568999999999999999999999999999976 34578999999999999999999999999999
Q ss_pred ceEEEEecCCCchhh
Q 004002 342 KRIKLEPSRPGGARR 356 (780)
Q Consensus 342 r~L~V~~a~~k~~r~ 356 (780)
++|+|.+++++.++.
T Consensus 171 ~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 171 RKVFVGRFKSRKERE 185 (213)
T ss_dssp EECEEEECCCHHHHH
T ss_pred EEEEEEEcCCCcccc
Confidence 999999999876544
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-29 Score=242.70 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=143.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
|+|||+|||.++|+++|+++|++||+|.+++. .++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999873 47789999999999999999999999999999999999987665
Q ss_pred CCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 004002 269 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (780)
Q Consensus 269 ~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~ 343 (780)
.. ......+|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 42 3345679999999999999999999999999999876 4667899999999999999999999999999999
Q ss_pred EEEEecCC
Q 004002 344 IKLEPSRP 351 (780)
Q Consensus 344 L~V~~a~~ 351 (780)
|+|.+|++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=7.9e-29 Score=240.15 Aligned_cols=155 Identities=23% Similarity=0.431 Sum_probs=142.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
++++|||+|||+++++++|+++|++||+|.+++ .+++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 568999999999999999999999999999987 267789999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~ 340 (780)
+... .....+|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 7543 335679999999999999999999999999999875 4566899999999999999999999999998
Q ss_pred C--ceEEEEec
Q 004002 341 G--KRIKLEPS 349 (780)
Q Consensus 341 G--r~L~V~~a 349 (780)
| ++|+|++|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999886
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=9.9e-29 Score=238.55 Aligned_cols=155 Identities=25% Similarity=0.441 Sum_probs=141.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
++++|||+|||+++|+++|+++|++||+|.+++. +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999872 67889999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~ 340 (780)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6542 335578999999999999999999999999999876 4556899999999999999999999999999
Q ss_pred Cce--EEEEec
Q 004002 341 GKR--IKLEPS 349 (780)
Q Consensus 341 Gr~--L~V~~a 349 (780)
|+. |+|++|
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.1e-28 Score=247.15 Aligned_cols=163 Identities=20% Similarity=0.387 Sum_probs=144.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4589999999999999999999999999999984 67799999999999999999999999999999999998876
Q ss_pred CCCCCC-------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 004002 266 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 266 pk~~~s-------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
...... .......+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543211 01234579999999999999999999999999999976 456789999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 004002 334 LNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~k~ 353 (780)
|||..|.|+.|+|.++.++.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998764
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.8e-28 Score=242.50 Aligned_cols=167 Identities=19% Similarity=0.370 Sum_probs=140.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
.....++|||+|||+++|+++|+++|++||+|.+|+. +++++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 3446799999999999999999999999999999872 577899999999999999999985 8999999999999
Q ss_pred cCCCCCCCCC--CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhC
Q 004002 263 FSIPKDNPSD--KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN 335 (780)
Q Consensus 263 ~a~pk~~~s~--~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~Ln 335 (780)
++.+...... ......+|||+|||.++|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+||.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 9876543321 2234579999999999999999999999999999976 466799999999999999999986 8
Q ss_pred CCccCCceEEEEecCCCchhh
Q 004002 336 RSDIAGKRIKLEPSRPGGARR 356 (780)
Q Consensus 336 G~~i~Gr~L~V~~a~~k~~r~ 356 (780)
|..+.|+.|.|.++.++.+..
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CCEETTEECEEEECC------
T ss_pred CcEECCEEEEEEecCChhHhc
Confidence 999999999999999876543
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=5.7e-29 Score=243.69 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=144.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE----EeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv----~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+.++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 3467999999999999999999999999864331 1468899999999999999999995 9999999999999999
Q ss_pred CCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 004002 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (780)
Q Consensus 265 ~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L 344 (780)
.++... ......+|||+|||.++++++|+++|++||.|..+..++.++|+|||+|.+.++|.+|++.|||..+.|++|
T Consensus 89 ~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 89 KGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp CCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred CCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 876532 334567999999999999999999999999999996678889999999999999999999999999999999
Q ss_pred EEEecCCC
Q 004002 345 KLEPSRPG 352 (780)
Q Consensus 345 ~V~~a~~k 352 (780)
+|.+++++
T Consensus 167 ~v~~a~~k 174 (175)
T 1fje_B 167 SLYYTGEK 174 (175)
T ss_dssp EEEECSSC
T ss_pred EEEecCCC
Confidence 99999876
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=8.5e-28 Score=253.84 Aligned_cols=163 Identities=23% Similarity=0.449 Sum_probs=145.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr----~lF~~yG~I~sv~~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
..++++|||+|||.++|+++|+ ++|++||+|.+|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3578999999999999999977 89999999999883 78899999999999999999999999999999999999
Q ss_pred cCCCCCCCC-----------------------------------------------------------------------
Q 004002 263 FSIPKDNPS----------------------------------------------------------------------- 271 (780)
Q Consensus 263 ~a~pk~~~s----------------------------------------------------------------------- 271 (780)
|+..+....
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 986544200
Q ss_pred ------------------------------------CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCccc
Q 004002 272 ------------------------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRH 315 (780)
Q Consensus 272 ------------------------------------~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG 315 (780)
.......+|||+|||.++++++|+++|++||.|+.|++....+|
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g 245 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD 245 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 01113467999999999999999999999999999998766679
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCC
Q 004002 316 HKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRP 351 (780)
Q Consensus 316 ~aFV~F~~~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~~ 351 (780)
+|||+|.+.++|++|++.|||..+. |+.|+|.|+++
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 9999999999999999999999999 99999999863
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.4e-27 Score=245.98 Aligned_cols=163 Identities=26% Similarity=0.359 Sum_probs=146.1
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 190 HPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 190 ~~s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
.++++|||+|||+ ++++++|+++|++||+|.+|+.....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 4679999999999 999999999999999999998655568999999999999999999999999999999999987552
Q ss_pred CCCCC-------------------------------CCCccceeecCCCCCCChhHHHHHhcccC-CeeEEEeCCCcccE
Q 004002 269 NPSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRHH 316 (780)
Q Consensus 269 ~~s~~-------------------------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG-~I~~v~~~g~srG~ 316 (780)
....+ .....+|||+|||.++++++|+++|++|| .|..|++....+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~ 191 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKM 191 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTC
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcE
Confidence 11100 11246899999999999999999999999 99999997777999
Q ss_pred EEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCCC
Q 004002 317 KFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 352 (780)
Q Consensus 317 aFV~F~~~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~~k 352 (780)
|||+|.+.++|.+|++.|||..+. |++|+|.+++++
T Consensus 192 afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 192 ALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999999999 999999999874
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.8e-28 Score=237.66 Aligned_cols=155 Identities=20% Similarity=0.434 Sum_probs=140.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
++++|||+|||+++|+++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999998 2578999999999999999999994 678999999999886
Q ss_pred CCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~ 340 (780)
++. ......+|||+|||.++++++|+++|++||.|..|++ ++.++|+|||+|.+.++|.+|++ ++|..+.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 543 2234568999999999999999999999999999975 46678999999999999999998 8999999
Q ss_pred CceEEEEecCCC
Q 004002 341 GKRIKLEPSRPG 352 (780)
Q Consensus 341 Gr~L~V~~a~~k 352 (780)
|++|+|.++.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=1e-27 Score=233.54 Aligned_cols=157 Identities=20% Similarity=0.405 Sum_probs=137.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CC--CcceEEEEEEecHHHHHHHHHHccCcccc---ccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 260 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tg--kskG~aFV~F~~~e~A~~Al~~Lng~~l~---gr~I~ 260 (780)
..++|||+|||+++|+++|+++|++||+|.+|+. ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999872 22 79999999999999999999999998875 56777
Q ss_pred cccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004002 261 IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (780)
Q Consensus 261 V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG 336 (780)
+.++.+... ......+|||+|||.++|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 776654432 2335679999999999999999999999999999976 455789999999999999999999999
Q ss_pred CccC---CceEEEEecC
Q 004002 337 SDIA---GKRIKLEPSR 350 (780)
Q Consensus 337 ~~i~---Gr~L~V~~a~ 350 (780)
..+. |++|+|++|.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999974
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=5.9e-28 Score=235.24 Aligned_cols=153 Identities=16% Similarity=0.345 Sum_probs=139.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~y----G-------~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I 259 (780)
+.++|||+|||+++|+++|+++|++| | .|.+++ .++++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-EETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 46899999999999999999999999 7 788776 4678999999999999999999 899999999999
Q ss_pred ccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 004002 260 DIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 334 (780)
Q Consensus 260 ~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~L 334 (780)
.|.++.+.... ....+|||+|||.++++++|+++|++||.|..|++ ++.++|+|||+|.+.++|++|++.|
T Consensus 81 ~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99987654322 24678999999999999999999999999999976 5667899999999999999999999
Q ss_pred CCCccCCceEEEEec
Q 004002 335 NRSDIAGKRIKLEPS 349 (780)
Q Consensus 335 nG~~i~Gr~L~V~~a 349 (780)
||..+.|++|+|++|
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999987
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.1e-27 Score=243.78 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=136.9
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 191 PSRTLFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 191 ~s~tLfVgNLp-~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
++++|||+||| .++|+++|+++|++||+|.+|+.....+|||||+|.+.++|++|++.|||..|.|++|.|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46899999999 89999999999999999999997666799999999999999999999999999999999999864321
Q ss_pred CC-C--------------------C------------CCCccceeecCCCCCCChhHHHHHhcccCCe--eEEEeCC---
Q 004002 270 PS-D--------------------K------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV--KEIRETP--- 311 (780)
Q Consensus 270 ~s-~--------------------~------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I--~~v~~~g--- 311 (780)
.. . + .....+|||+|||.++|+++|+++|++||.| +.|++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 00 0 0 0123579999999999999999999999999 8887632
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCCCccCCc----eEEEEec
Q 004002 312 HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK----RIKLEPS 349 (780)
Q Consensus 312 ~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr----~L~V~~a 349 (780)
.++|+|||+|.+.++|.+||..|||..+.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 4569999999999999999999999999885 5666654
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.1e-27 Score=239.85 Aligned_cols=161 Identities=26% Similarity=0.368 Sum_probs=144.6
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCC
Q 004002 192 SRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 270 (780)
Q Consensus 192 s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~ 270 (780)
+++|||+|||+ ++++++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 58999999999 99999999999999999999865555899999999999999999999999999999999998754211
Q ss_pred CCC-------------------------------CCCccceeecCCCCCCChhHHHHHhcccC-CeeEEEeCCCcccEEE
Q 004002 271 SDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRHHKF 318 (780)
Q Consensus 271 s~~-------------------------------~~~~~~L~V~NLp~~vteedL~~~Fs~yG-~I~~v~~~g~srG~aF 318 (780)
..+ .....+|||+|||..+++++|+++|++|| .|..|++....+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 100 12256899999999999999999999999 9999999777799999
Q ss_pred EEEcCHHHHHHHHHHhCCCccC-CceEEEEecCCC
Q 004002 319 IEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 352 (780)
Q Consensus 319 V~F~~~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~~k 352 (780)
|+|.+.++|.+|++.|||..+. |++|+|.+++++
T Consensus 163 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 163 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999 999999999874
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.4e-27 Score=237.83 Aligned_cols=162 Identities=16% Similarity=0.323 Sum_probs=142.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~y----G-------~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I 259 (780)
.+++|||+|||+++|+++|+++|++| | .|..++ .++++|||||+|.+.++|++|+ .|+|..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~-~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE-EETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE-ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46899999999999999999999999 5 677776 4778999999999999999999 799999999999
Q ss_pred ccccCCCCCCCCC----------------CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEE
Q 004002 260 DIHFSIPKDNPSD----------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKF 318 (780)
Q Consensus 260 ~V~~a~pk~~~s~----------------~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aF 318 (780)
.|.++.+...... ......+|||+|||.++++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999876532110 1134579999999999999999999999999999876 556689999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 319 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 319 V~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
|+|.+.++|++|++.|||..+.|+.|+|.+++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998753
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=3e-27 Score=249.89 Aligned_cols=178 Identities=19% Similarity=0.320 Sum_probs=161.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 270 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~ 270 (780)
++++|||+|||+++|+++|+++|++|| |..|+. ++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----
Confidence 568999999999999999999999999 999876 7899999999999999999999999999999999999864
Q ss_pred CCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 271 SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 271 s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
...+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 2358999999999999999999999999999875 566789999999999999999999999999999999
Q ss_pred EEecCCCch-------hhhHhhhhchhc-cHHHHHHHHhhhCC
Q 004002 346 LEPSRPGGA-------RRNLMLQLNQEL-EQDESRILQHQVGS 380 (780)
Q Consensus 346 V~~a~~k~~-------r~~~l~ql~~~~-~~~~~~~~~~~~Gs 380 (780)
|.++.++.. +..++.++...+ +++++..+|..+|.
T Consensus 169 v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~ 211 (284)
T 3smz_A 169 VHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS 211 (284)
T ss_dssp EEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC
T ss_pred EEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC
Confidence 999987653 234678888886 88999999887753
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=2.2e-26 Score=244.16 Aligned_cols=182 Identities=19% Similarity=0.260 Sum_probs=155.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 187 ~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.+.++|||+|||+++|+++|+++|++||+|..|+. ...++|||||+|.+.++|++|++ +++..+.|++|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 34567899999999999999999999999999999873 23368999999999999999995 999999999999988
Q ss_pred CCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccC-CeeEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 264 a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG-~I~~v~~~----g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
+ ...+|||+|||.++++++|+++|++|| .|..|++. +.++|||||+|.+.++|.+|++.|||..
T Consensus 115 ~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 115 L-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp C-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred C-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 6 256899999999999999999999999 99999863 4578999999999999999999999999
Q ss_pred cCCceEEEEecCCCchh-----------hhHhhhhchh-ccHHHHHHHHhhhCC
Q 004002 339 IAGKRIKLEPSRPGGAR-----------RNLMLQLNQE-LEQDESRILQHQVGS 380 (780)
Q Consensus 339 i~Gr~L~V~~a~~k~~r-----------~~~l~ql~~~-~~~~~~~~~~~~~Gs 380 (780)
+.|+.|.|.++.+.... ..++.++... +++++++.+|.++|.
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS 237 (292)
T ss_dssp ETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC
T ss_pred eCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC
Confidence 99999999998875432 3457788888 999999999998863
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.5e-25 Score=235.42 Aligned_cols=155 Identities=28% Similarity=0.423 Sum_probs=140.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
...++|||+|||+++|+++|+++|++||.|..|+. .+++|||||+|.+.++|++|++.|+|..|.|++|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---
Confidence 45689999999999999999999999999999985 56799999999999999999999999999999999999864
Q ss_pred CCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCC-CccC---C
Q 004002 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR-SDIA---G 341 (780)
Q Consensus 270 ~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG-~~i~---G 341 (780)
..+|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..||+ ..+. +
T Consensus 96 -------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 96 -------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp -------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred -------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 358999999999999999999999999999875 567799999999999999999999954 4444 8
Q ss_pred ceEEEEecCCCchh
Q 004002 342 KRIKLEPSRPGGAR 355 (780)
Q Consensus 342 r~L~V~~a~~k~~r 355 (780)
++|.|.++.+....
T Consensus 169 r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 169 RPVIVEPMEQFDDE 182 (261)
T ss_dssp CBCEEEECCCEESS
T ss_pred ceEEEeeccccCcc
Confidence 99999999876543
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=9.4e-20 Score=185.39 Aligned_cols=155 Identities=13% Similarity=0.236 Sum_probs=125.1
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCcc----cccccCCCCcccCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPNGAGTVAGEHP 186 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~----~~~~l~n~~~k~~g~~~ 186 (780)
.+.+||++||.+++|.+|+++|+.+|.| .|..|..+...+|++++.|.+...+..+ +...+.+...++.....
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 4689999999999999999999999997 6777888888999999999987665422 22222222222211111
Q ss_pred ---CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCccccccccc
Q 004002 187 ---YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (780)
Q Consensus 187 ---~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~ 260 (780)
......++|||+|||+++|+++|+++|++||.|..|+ ..+.++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 1122457999999999999999999999999999987 3566899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 004002 261 IHFSIPKD 268 (780)
Q Consensus 261 V~~a~pk~ 268 (780)
|.++.++.
T Consensus 175 V~~a~~~~ 182 (213)
T 4f02_A 175 VGRFKSRK 182 (213)
T ss_dssp EEECCCHH
T ss_pred EEEcCCCc
Confidence 99998753
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.3e-19 Score=174.50 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=113.1
Q ss_pred CCcceEEEEEEecHHHHHHHHHHc-cCccccccccccccCCCCC------------CCCCCCCCccceeecCCCCCCChh
Q 004002 226 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSDKDLNQGTLVVFNLDPSVSNE 292 (780)
Q Consensus 226 gkskG~aFV~F~~~e~A~~Al~~L-ng~~l~gr~I~V~~a~pk~------------~~s~~~~~~~~L~V~NLp~~vtee 292 (780)
.+.+|+++|+|.+.++|++|++++ +|..+.| .+.+.++..+. .........++|||+|||.+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 99999876521 112233456799999999999999
Q ss_pred HHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 293 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 293 dL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
+|+++|++||.|+.|++...++|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998764
No 23
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=7.4e-19 Score=177.08 Aligned_cols=157 Identities=13% Similarity=0.224 Sum_probs=125.9
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP 186 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~~ 186 (780)
.+.++|++||.++++.+++++|+.+|.| .|..+..+...++++++.|.+...+.. ++...+.+....+.....
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5789999999999999999999999987 555566677889999999998776652 333334444333322211
Q ss_pred C------------CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHc
Q 004002 187 Y------------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249 (780)
Q Consensus 187 ~------------~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~L 249 (780)
. .....++|||+|||.++|+++|+++|++||.|..|+. +++++|||||+|.+.++|.+|++.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 1 1234589999999999999999999999999999873 5788999999999999999999999
Q ss_pred cCccccccccccccCCCCCCC
Q 004002 250 QNKPLRRRKLDIHFSIPKDNP 270 (780)
Q Consensus 250 ng~~l~gr~I~V~~a~pk~~~ 270 (780)
+|..|.|++|.|.|+.++..+
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSST
T ss_pred cCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999876543
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=6.8e-19 Score=170.43 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=103.6
Q ss_pred CCCcceEEEEEEecHHHHHHHHHHccCcccc-------ccccccccCCCCC--CCCCCCCCccceeecCCCCCCChhHHH
Q 004002 225 ACKHRGFVMISYYDIRAARTAMRALQNKPLR-------RRKLDIHFSIPKD--NPSDKDLNQGTLVVFNLDPSVSNEDLR 295 (780)
Q Consensus 225 tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~-------gr~I~V~~a~pk~--~~s~~~~~~~~L~V~NLp~~vteedL~ 295 (780)
..+++|||||+|.+.++|++|++.+++.... +............ ..........+|||+|||.++++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4578999999999999999999988764322 2222222111111 111223446799999999999999999
Q ss_pred HHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 296 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 296 ~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
++|++||.|..|++ ++.++|||||+|.+.++|++||+.|||..+.|+.|+|.+++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999986 567899999999999999999999999999999999999987653
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-18 Score=167.91 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=120.9
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccC---CC
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVA---GE 184 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~---g~ 184 (780)
+.++|++||.++++.++.++|+.+|.| .+..+. .+..++++++.|.+...+. .+++..+.+....+. ..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 368999999999999999999999997 444443 4668899999999876654 223333443322221 11
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccc
Q 004002 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (780)
Q Consensus 185 ~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I 259 (780)
......+.++|||+|||.++|+++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 1233456789999999999999999999999999999873 57889999999999999999999999999999999
Q ss_pred ccccCC
Q 004002 260 DIHFSI 265 (780)
Q Consensus 260 ~V~~a~ 265 (780)
.|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999986
No 26
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=1.2e-18 Score=168.38 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=122.5
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCCC-
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP- 186 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~~- 186 (780)
+.++|++||.++++.+++++|+.+|.| .+..+..++..+|++++.|.+...|.. +.+..+.+....+....+
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 679999999999999999999999987 444555677889999999998876652 333344443333322222
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccc--ccc
Q 004002 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKL 259 (780)
Q Consensus 187 ~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g--r~I 259 (780)
....+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.| ++|
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 23346789999999999999999999999999998872 67789999999999999999999999999977 999
Q ss_pred ccccC
Q 004002 260 DIHFS 264 (780)
Q Consensus 260 ~V~~a 264 (780)
.|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 27
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=2.2e-19 Score=173.63 Aligned_cols=152 Identities=18% Similarity=0.281 Sum_probs=121.6
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCcccc--cccCCCCcccCCCCC-CC
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLH--YSVPNGAGTVAGEHP-YG 188 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~~~--~~l~n~~~k~~g~~~-~~ 188 (780)
+.++|++||.++++.+++++|+.+|.| .|..+..++..+|++++.|.+...+..+.. ..+.+....+....+ ..
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~ 83 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE 83 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh
Confidence 689999999999999999999999997 455565678889999999998766543221 112222222211111 11
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||.++|+++|+++|++||.|..++ .+++++|||||+|.+.++|++|++ +++..+.|++|.|.|
T Consensus 84 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKR 162 (167)
T ss_dssp HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEE
T ss_pred ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEee
Confidence 23457999999999999999999999999999987 257899999999999999999998 899999999999999
Q ss_pred CCCC
Q 004002 264 SIPK 267 (780)
Q Consensus 264 a~pk 267 (780)
+.|+
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 28
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.4e-18 Score=172.28 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=120.3
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCcc---cccccCCCCcccCC----
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTVAG---- 183 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~~---~~~~l~n~~~k~~g---- 183 (780)
...++|++||.++++.+++++|+.+|.| .|..+..++..+|++++.|.+...|..+ .+..+.+....+..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 4789999999999999999999999987 6666777788899999999987665532 22222222111111
Q ss_pred ---CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 184 ---EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 184 ---~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
..+....+.++|||+|||.++|+++|+++|++||.|..|+. +++++|||||+|.+.++|++|++. ++..|.
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 11112235589999999999999999999999999999872 578899999999999999999996 799999
Q ss_pred ccccccccCCCCCCCC
Q 004002 256 RRKLDIHFSIPKDNPS 271 (780)
Q Consensus 256 gr~I~V~~a~pk~~~s 271 (780)
|+.|.|.++.++....
T Consensus 172 G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 172 GHNCEVRKALSKQEMA 187 (196)
T ss_dssp TEECEEEECC------
T ss_pred CEEEEEEecCChhHhc
Confidence 9999999998876543
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=1.8e-18 Score=168.10 Aligned_cols=152 Identities=15% Similarity=0.263 Sum_probs=119.3
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccC--cccceEEEeecCccccCc----ccccccCCC---Cccc
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQES--LSMSMSKISISDSASGNG----LLHYSVPNG---AGTV 181 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~es--a~~g~~~v~~~~~~~a~~----~~~~~l~n~---~~k~ 181 (780)
.++++|++||.++++.+++++|+.+|.| .|..+.... ..++++++.|.+...|.. +++..+... ...+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 3689999999999999999999999997 555565554 788999999998766542 222222211 1111
Q ss_pred --CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 182 --AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 182 --~g~~~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
...........++|||+|||.++|+++|+++|++||.|..++ ..++++|||||+|.+.++|++|++.|+|..+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 111122233568999999999999999999999999999987 35778999999999999999999999998876
Q ss_pred ---ccccccccCC
Q 004002 256 ---RRKLDIHFSI 265 (780)
Q Consensus 256 ---gr~I~V~~a~ 265 (780)
+++|.|.|+.
T Consensus 163 ~g~~~~l~V~~ad 175 (175)
T 3nmr_A 163 EGCSSPMVVKFAD 175 (175)
T ss_dssp TTCSSCCEEEECC
T ss_pred CCCCCCeEEEecC
Confidence 4999999873
No 30
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2e-18 Score=166.12 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=121.5
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCCCC
Q 004002 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPY 187 (780)
Q Consensus 115 ~el~V~~Lp~s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~~~ 187 (780)
+.++|++||.++++.+++++|+.+|.| .+..+..++..+|++++.|.+...|.. +++..+.+....+....+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 579999999999999999999999997 566666678888999999998876652 3334444433333222222
Q ss_pred -CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccc--c
Q 004002 188 -GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK--L 259 (780)
Q Consensus 188 -~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~--I 259 (780)
.....++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|+. |
T Consensus 83 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 83 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 2345689999999999999999999999999999873 5778999999999999999999999999999975 6
Q ss_pred ccccC
Q 004002 260 DIHFS 264 (780)
Q Consensus 260 ~V~~a 264 (780)
.|.||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 66664
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=8.2e-19 Score=161.85 Aligned_cols=103 Identities=16% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
..++|||+|||+++|+++|+++|++||.|.+|+ ..+.+||||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 357999999999999999999999999999987 35668999999999999999999999999999999999999876
Q ss_pred CCCCC----CCCCccceeecCCCCCCChhH
Q 004002 268 DNPSD----KDLNQGTLVVFNLDPSVSNED 293 (780)
Q Consensus 268 ~~~s~----~~~~~~~L~V~NLp~~vteed 293 (780)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 223346899999999999874
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=4.8e-19 Score=173.01 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=125.0
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE--EEeccCccCcccceEEEeecCccccCc---ccccccCCCCcccCCCC---
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM--ELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGTVAGEH--- 185 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i--~V~~d~~esa~~g~~~v~~~~~~~a~~---~~~~~l~n~~~k~~g~~--- 185 (780)
...++|++||.++++.+++++|+.+|.+ .+..+...+..+|++++.|.+...|.. +++..+.+....+....
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence 4789999999999999999999999875 133455667788999999998766543 33333444333332222
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 186 ~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.....+.++|||+|||.++|+++|+++|++||+|..+..+++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+.
T Consensus 93 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 93 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 12334568999999999999999999999999999886678899999999999999999999999999999999999998
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=1.2e-17 Score=162.21 Aligned_cols=148 Identities=14% Similarity=0.263 Sum_probs=116.5
Q ss_pred CceeeeccCCCCCChHHHHHHhcCC----C-------cEEEeccCccCcccceEEEeecCccccCcc---cccccCCCCc
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSG----G-------GMELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAG 179 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~----G-------~i~V~~d~~esa~~g~~~v~~~~~~~a~~~---~~~~l~n~~~ 179 (780)
..+++|++||.++++.+++++|+.+ | .|. +......++++++.|.+...|..+ ++..+.+...
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~---~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL---AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE---EEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCcee---eeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 3689999999999999999999999 5 331 112234579999999987666533 2333333333
Q ss_pred ccCCCCCC-CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcc
Q 004002 180 TVAGEHPY-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 253 (780)
Q Consensus 180 k~~g~~~~-~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~ 253 (780)
.+...... .....++|||+|||.++|+++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|+|..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 33222221 2234689999999999999999999999999999873 67889999999999999999999999999
Q ss_pred ccccccccccC
Q 004002 254 LRRRKLDIHFS 264 (780)
Q Consensus 254 l~gr~I~V~~a 264 (780)
+.|++|.|.||
T Consensus 161 ~~g~~l~V~~A 171 (172)
T 2g4b_A 161 LGDKKLLVQRA 171 (172)
T ss_dssp ETTEECEEEEC
T ss_pred ECCeEEEEEeC
Confidence 99999999987
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=1.5e-17 Score=165.13 Aligned_cols=156 Identities=12% Similarity=0.202 Sum_probs=118.1
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE---E-----EeccCccCcccceEEEeecCccccCcc---cccccCCCCcccC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---E-----LEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTVA 182 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i---~-----V~~d~~esa~~g~~~v~~~~~~~a~~~---~~~~l~n~~~k~~ 182 (780)
.++++|++||.++++.+++++|+.+|.+ . ...+......++++++.|.+...|..+ ++..+.+....+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~ 83 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEe
Confidence 5789999999999999999999999421 0 011222345678999999887655432 2222222211111
Q ss_pred CCC---------------------CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEE
Q 004002 183 GEH---------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISY 236 (780)
Q Consensus 183 g~~---------------------~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F 236 (780)
... .....+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 84 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEE
Confidence 100 011245689999999999999999999999999999872 677899999999
Q ss_pred ecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 237 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 237 ~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
.+.++|++|++.|+|..|.|++|.|.|+.++..
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999987653
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=9.7e-17 Score=164.88 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=117.5
Q ss_pred CceeeeccCCC-CCChHHHHHHhcCCCcE---EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCC
Q 004002 114 MDDFDLRGLPS-SLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEH 185 (780)
Q Consensus 114 ~~el~V~~Lp~-s~~E~el~dlFs~~G~i---~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~ 185 (780)
...++|++||. ++++.+++++|+.+|.| .|..+. ++++++.|.+...|.. +++..+.+....+....
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 47899999999 99999999999999997 333332 6889999988765542 33333333322221000
Q ss_pred C------------------------------------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEeCCCc
Q 004002 186 P------------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKH 228 (780)
Q Consensus 186 ~------------------------------------~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG-~I~sv~~tgks 228 (780)
. ....+.++|||+|||.++++++|+++|++|| +|..++...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 0 0123468999999999999999999999999 99999876667
Q ss_pred ceEEEEEEecHHHHHHHHHHccCcccc-ccccccccCCCC
Q 004002 229 RGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 267 (780)
Q Consensus 229 kG~aFV~F~~~e~A~~Al~~Lng~~l~-gr~I~V~~a~pk 267 (780)
+|||||+|.+.++|++|++.|+|..+. |++|.|.|+.++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999999999999 999999999764
No 36
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.2e-16 Score=168.28 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccc-ccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~-gr~I~V~~a~ 265 (780)
+.++|||+|||.++|+++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|+|..|. |++|+|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 56889999999999999999999999999999865545799999999999999999999999999 9999999985
No 37
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=158.96 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=115.8
Q ss_pred ceeeeccCCC-CCChHHHHHHhcCCCcE-EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCC---
Q 004002 115 DDFDLRGLPS-SLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEH--- 185 (780)
Q Consensus 115 ~el~V~~Lp~-s~~E~el~dlFs~~G~i-~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~--- 185 (780)
..++|++||. ++++.+++++|+.+|.| .|.+-... ++++++.|.+...|.. +++..+.+....+....
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 6799999999 99999999999999987 33222211 6788888887665541 22333333322111000
Q ss_pred ---------------------------------CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEeCCCcceE
Q 004002 186 ---------------------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKHRGF 231 (780)
Q Consensus 186 ---------------------------------~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG-~I~sv~~tgkskG~ 231 (780)
.....+.++|||+|||.++++++|+++|++|| .|..++.....+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~ 160 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKM 160 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSC
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcE
Confidence 00123478999999999999999999999999 99999876667999
Q ss_pred EEEEEecHHHHHHHHHHccCcccc-ccccccccCCCC
Q 004002 232 VMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 267 (780)
Q Consensus 232 aFV~F~~~e~A~~Al~~Lng~~l~-gr~I~V~~a~pk 267 (780)
|||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 161 afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 161 ALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999999999 999999998764
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=142.43 Aligned_cols=76 Identities=22% Similarity=0.478 Sum_probs=71.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|||+|||+++|+++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|+|..|.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 357999999999999999999999999999987 358899999999999999999999999999999999999997
Q ss_pred C
Q 004002 266 P 266 (780)
Q Consensus 266 p 266 (780)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=141.29 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=70.9
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
.++|||+|||.++|+++|+++|++||.|++|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 468999999999999999999999999999975 577899999999999999999999999999999999999986
No 40
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=2.8e-16 Score=159.66 Aligned_cols=147 Identities=12% Similarity=0.134 Sum_probs=108.0
Q ss_pred ceeeeccCC-CCCChHHHHHHhcCCCcE-EEeccCccCcccceEEEeecCccccC----cccccccCCCCcccCC-----
Q 004002 115 DDFDLRGLP-SSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAG----- 183 (780)
Q Consensus 115 ~el~V~~Lp-~s~~E~el~dlFs~~G~i-~V~~d~~esa~~g~~~v~~~~~~~a~----~~~~~~l~n~~~k~~g----- 183 (780)
..++|++|+ .++++.+|+++|+.+|.| .|.+-. . .+|++++.|.+...|. .+++..+.+..+.+..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~-~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK-S--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT-T--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec-C--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 579999999 899999999999999998 232221 1 3688999998876554 2233333222111100
Q ss_pred ----C-------------------CC----------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCE--EEEEe---C
Q 004002 184 ----E-------------------HP----------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDI--RTLYT---A 225 (780)
Q Consensus 184 ----~-------------------~~----------~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I--~sv~~---t 225 (780)
. .. ....+.++|||+|||+++|+++|+++|++||.| .+++. .
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 0 00 011356799999999999999999999999998 77763 2
Q ss_pred CCcceEEEEEEecHHHHHHHHHHccCcccccc----ccccccC
Q 004002 226 CKHRGFVMISYYDIRAARTAMRALQNKPLRRR----KLDIHFS 264 (780)
Q Consensus 226 gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr----~I~V~~a 264 (780)
++.+|||||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 45679999999999999999999999999876 5555554
No 41
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=1.1e-16 Score=146.77 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
.+.++|||+|||.++|+++|+++|++||.|..|+. .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 46789999999999999999999999999999873 5778999999999999999999999999999999999998764
Q ss_pred CCCCCCCCCccceeecCCCCCCChhHHHHHhcccCC
Q 004002 268 DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303 (780)
Q Consensus 268 ~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~ 303 (780)
... .+++...++++|+++|++||.
T Consensus 86 ~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 RAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 321 567778899999999999985
No 42
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2.1e-16 Score=150.17 Aligned_cols=120 Identities=22% Similarity=0.333 Sum_probs=77.6
Q ss_pred eEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe
Q 004002 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (780)
Q Consensus 230 G~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~ 309 (780)
-++|++|.+...|..|+..++|....++. .+.+..+. ......++|||+|||.++++++|+++|++||.|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCSC----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 47889999999999999999888776654 33343332 23345679999999999999999999999999999986
Q ss_pred -----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 310 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 310 -----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
++.++|||||+|.+.++|++||+.|||..+.|++|+|++++++..
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 456789999999999999999999999999999999999987654
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=140.40 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=76.3
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|++|++ +++++|||||+|.+.++|++||+.|||..+.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999976 57789999999999999999999999999999999999998
Q ss_pred CCchhhhHh
Q 004002 351 PGGARRNLM 359 (780)
Q Consensus 351 ~k~~r~~~l 359 (780)
.+..++.+.
T Consensus 85 ~~~~~~~~~ 93 (110)
T 3s8s_A 85 KGQQRMKYY 93 (110)
T ss_dssp TTHHHHHHH
T ss_pred CCcHHHHHH
Confidence 876655433
No 44
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1e-15 Score=160.40 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=116.0
Q ss_pred CceeeeccCCCCCChHHHHHHhcCCCcE-EEeccCccCcccceEEEeecCccccCc----ccccccCCCCcccCCCCCCC
Q 004002 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPYG 188 (780)
Q Consensus 114 ~~el~V~~Lp~s~~E~el~dlFs~~G~i-~V~~d~~esa~~g~~~v~~~~~~~a~~----~~~~~l~n~~~k~~g~~~~~ 188 (780)
.+.++|++||.++++.+++++|+.+|.| .|.+. ..+|++++.|.+...|.. +++..+.+....+..
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~----- 92 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF----- 92 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE-----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee-----
Confidence 3689999999999999999999999997 33321 347899999998766542 333334433333322
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCc-ccc---ccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNK-PLR---RRKLD 260 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~-~l~---gr~I~ 260 (780)
..+.++|||+|||.++|+++|+++|++||.|..|+ .+++++|||||+|.+.++|.+|++.|++. .+. +++|.
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 23568999999999999999999999999999987 36789999999999999999999999554 433 89999
Q ss_pred cccCCCCC
Q 004002 261 IHFSIPKD 268 (780)
Q Consensus 261 V~~a~pk~ 268 (780)
|.++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987654
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=1.3e-15 Score=140.24 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=72.2
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
..+|||+|||.++|+++|+++|++||.|++|++ .+.++|||||+|.+.++|++||+.|||..+.|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 468999999999999999999999999999876 34568999999999999999999999999999999999998876
Q ss_pred hhh
Q 004002 354 ARR 356 (780)
Q Consensus 354 ~r~ 356 (780)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=137.02 Aligned_cols=95 Identities=24% Similarity=0.357 Sum_probs=81.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 272 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~ 272 (780)
++|||+|||+++|+++|+++|++||+|..|+....++|||||+|.+.++|++|++.|++..+.|++|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999885333899999999999999999999999999999999999987654322
Q ss_pred C------CCCccceeecCCCC
Q 004002 273 K------DLNQGTLVVFNLDP 287 (780)
Q Consensus 273 ~------~~~~~~L~V~NLp~ 287 (780)
. .....+|||+||+.
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCCCccccCCCceecCCCCC
Confidence 1 12246899999973
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-16 Score=136.79 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHcc-CccccccccccccC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYG-DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 264 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG-~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Ln-g~~l~gr~I~V~~a 264 (780)
+++|||+|||+++|+++|+++|++|| +|.+|+ .++++||||||+|.+.++|++|++.++ +..+.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 788876 358899999999999999999999874 56799999999999
Q ss_pred CCCCCCC
Q 004002 265 IPKDNPS 271 (780)
Q Consensus 265 ~pk~~~s 271 (780)
.|+....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8876543
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=137.43 Aligned_cols=78 Identities=18% Similarity=0.383 Sum_probs=72.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999873 5889999999999999999999999999999999999998
Q ss_pred CCC
Q 004002 265 IPK 267 (780)
Q Consensus 265 ~pk 267 (780)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 49
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=6.8e-15 Score=134.80 Aligned_cols=103 Identities=20% Similarity=0.400 Sum_probs=90.0
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3468999999999999999999999999999987 56678999999999999999999999999999999999998765
Q ss_pred hhhhHhhhhchhccHHHHHHHHhhhCCCC
Q 004002 354 ARRNLMLQLNQELEQDESRILQHQVGSPI 382 (780)
Q Consensus 354 ~r~~~l~ql~~~~~~~~~~~~~~~~Gsp~ 382 (780)
.. +++....+++++..++.++|...
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~~ 111 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGINT 111 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCCC
Confidence 43 44555667788888899887553
No 50
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=2.9e-15 Score=146.58 Aligned_cols=122 Identities=18% Similarity=0.274 Sum_probs=73.3
Q ss_pred EEEecHHHHHHHHHHccCcccc--ccccccccCCCCC----------------CCCCCCCCccceeecCCCCCCChhHHH
Q 004002 234 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD----------------NPSDKDLNQGTLVVFNLDPSVSNEDLR 295 (780)
Q Consensus 234 V~F~~~e~A~~Al~~Lng~~l~--gr~I~V~~a~pk~----------------~~s~~~~~~~~L~V~NLp~~vteedL~ 295 (780)
.+|.+.++|+.|+..|++.... |+.....+..... ..........+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999999887665 5555555422110 001122345689999999999999999
Q ss_pred HHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchh
Q 004002 296 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (780)
Q Consensus 296 ~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r 355 (780)
++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++.++..+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999976 4557899999999999999999999999999999999999877654
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=131.03 Aligned_cols=81 Identities=26% Similarity=0.399 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999984 6788999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 265 IPKDNP 270 (780)
Q Consensus 265 ~pk~~~ 270 (780)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=8.7e-15 Score=128.45 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=74.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
.+.++|||+|||.++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|++..+.|++|.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4679999999999999999999999999999887 3677899999999999999999999999999999999999987
Q ss_pred CCCC
Q 004002 267 KDNP 270 (780)
Q Consensus 267 k~~~ 270 (780)
...+
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.3e-15 Score=130.50 Aligned_cols=80 Identities=28% Similarity=0.401 Sum_probs=74.5
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999987 5667899999999999999999999999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 98764
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=130.84 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=75.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456799999999999999999999999999999983 67899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004002 263 FSIPKDN 269 (780)
Q Consensus 263 ~a~pk~~ 269 (780)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987654
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=130.36 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
...+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999873 478899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 264 SIPKDN 269 (780)
Q Consensus 264 a~pk~~ 269 (780)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987653
No 56
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.2e-15 Score=133.87 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccC--ccccccccccccCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSIP 266 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng--~~l~gr~I~V~~a~p 266 (780)
..+.++|||+|||+++|+++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 3467999999999999999999999999999999853 3489999999999999999998864 789999999999987
Q ss_pred CCCCCC
Q 004002 267 KDNPSD 272 (780)
Q Consensus 267 k~~~s~ 272 (780)
+.....
T Consensus 92 ~~~~~~ 97 (105)
T 1sjq_A 92 KELKTD 97 (105)
T ss_dssp SSCCCT
T ss_pred CCCCcc
Confidence 665443
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.57 E-value=6.1e-15 Score=126.81 Aligned_cols=77 Identities=27% Similarity=0.458 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
+.+|||+|||.++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999987 2578899999999999999999999999999999999999987
Q ss_pred CC
Q 004002 267 KD 268 (780)
Q Consensus 267 k~ 268 (780)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 58
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=128.76 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=74.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999873 5778999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 265 IPKDNP 270 (780)
Q Consensus 265 ~pk~~~ 270 (780)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=129.45 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++ |++..|.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999983 47789999999999999999999 999999999999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9887654
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.1e-15 Score=131.64 Aligned_cols=83 Identities=27% Similarity=0.407 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456799999999999999999999999999999983 47889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876543
No 61
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=129.71 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=74.2
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345679999999999999999999999999999976 3567899999999999999999999999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98753
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.56 E-value=6.9e-15 Score=130.57 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
++++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999983 47889999999999999999999999999999999999998
Q ss_pred CCC
Q 004002 266 PKD 268 (780)
Q Consensus 266 pk~ 268 (780)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-15 Score=133.69 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=70.0
Q ss_pred cceeecCCCCCCChhHHHHHhcccC-CeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhC-CCccCCceEEEEecC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIAGKRIKLEPSR 350 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG-~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~Ln-G~~i~Gr~L~V~~a~ 350 (780)
.+|||+|||.++|+++|+++|++|| .|++|++ ++.++|||||+|.+.++|++||+.|+ +..+.|++|+|.+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 8999875 57789999999999999999999885 568999999999998
Q ss_pred CCch
Q 004002 351 PGGA 354 (780)
Q Consensus 351 ~k~~ 354 (780)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=1.8e-14 Score=129.66 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccc---ccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLDI 261 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g---r~I~V 261 (780)
..+.++|||+|||.++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..+.+ ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34679999999999999999999999999999987 357789999999999999999999999999988 99999
Q ss_pred ccCCCCCCC
Q 004002 262 HFSIPKDNP 270 (780)
Q Consensus 262 ~~a~pk~~~ 270 (780)
.|+.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=130.36 Aligned_cols=83 Identities=18% Similarity=0.414 Sum_probs=75.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 446799999999999999999999999999999873 56899999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 004002 266 PKDNPS 271 (780)
Q Consensus 266 pk~~~s 271 (780)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=128.25 Aligned_cols=77 Identities=18% Similarity=0.415 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
+.++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5689999999999999999999999999999873 67789999999999999999999999999999999999987
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=130.83 Aligned_cols=83 Identities=17% Similarity=0.335 Sum_probs=75.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
...+.++|||+|||.++|+++|+++|++||+|..|+ ..++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 345679999999999999999999999999999987 356689999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004002 266 PKDNP 270 (780)
Q Consensus 266 pk~~~ 270 (780)
++...
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=130.05 Aligned_cols=83 Identities=25% Similarity=0.490 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcceEEEEEEecHHHHHHHHHHc-cCccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLD 260 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~------tgkskG~aFV~F~~~e~A~~Al~~L-ng~~l~gr~I~ 260 (780)
...+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.| ++..|.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456799999999999999999999999999999983 5678999999999999999999999 99999999999
Q ss_pred cccCCCCCCC
Q 004002 261 IHFSIPKDNP 270 (780)
Q Consensus 261 V~~a~pk~~~ 270 (780)
|.|+.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=131.06 Aligned_cols=83 Identities=22% Similarity=0.450 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999873 57889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876543
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=130.05 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=75.5
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
.....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3446689999999999999999999999999999876 3567899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987643
No 71
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.1e-14 Score=125.19 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
.+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999875 4667899999999999999999999999999999999999886
Q ss_pred c
Q 004002 353 G 353 (780)
Q Consensus 353 ~ 353 (780)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 72
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=130.46 Aligned_cols=81 Identities=25% Similarity=0.303 Sum_probs=74.7
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
.....+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999999999999999999999999999986 566789999999999999999999999999999999999
Q ss_pred cCCCch
Q 004002 349 SRPGGA 354 (780)
Q Consensus 349 a~~k~~ 354 (780)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 988764
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.4e-15 Score=132.12 Aligned_cols=80 Identities=18% Similarity=0.458 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 346689999999999999999999999999999873 478899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004002 264 SIPKD 268 (780)
Q Consensus 264 a~pk~ 268 (780)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=129.91 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=74.7
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe------CCCcccEEEEEEcCHHHHHHHHHHh-CCCccCCceEE
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIK 345 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~------~g~srG~aFV~F~~~e~A~~Ai~~L-nG~~i~Gr~L~ 345 (780)
......+|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.| ||..+.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445689999999999999999999999999999987 4456899999999999999999999 99999999999
Q ss_pred EEecCCCch
Q 004002 346 LEPSRPGGA 354 (780)
Q Consensus 346 V~~a~~k~~ 354 (780)
|.+++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999998754
No 75
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=126.59 Aligned_cols=77 Identities=18% Similarity=0.390 Sum_probs=70.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4568999999999999999999999999999976 55678999999999999999999999999999999999998
Q ss_pred CC
Q 004002 351 PG 352 (780)
Q Consensus 351 ~k 352 (780)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 76
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=132.42 Aligned_cols=79 Identities=13% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcc--ccccccccccCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIP 266 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~--l~gr~I~V~~a~p 266 (780)
..++++|||+|||.++|+++|+++|++||.|.+++. .+.||||||+|.+.++|++|++.|++.. |.|++|.|.|+.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 347899999999999999999999999999999975 3578999999999999999999999986 7899999999986
Q ss_pred CC
Q 004002 267 KD 268 (780)
Q Consensus 267 k~ 268 (780)
++
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=131.03 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=73.6
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.+++||||+|.+.++|++||+.||+..+.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345679999999999999999999999999999886 445689999999999999999999999999999999999988
Q ss_pred Cch
Q 004002 352 GGA 354 (780)
Q Consensus 352 k~~ 354 (780)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=129.12 Aligned_cols=81 Identities=25% Similarity=0.452 Sum_probs=73.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--------CCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~--------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
.+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46789999999999999999999999999998872 3378999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 004002 262 HFSIPKDNP 270 (780)
Q Consensus 262 ~~a~pk~~~ 270 (780)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 79
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=2.1e-14 Score=131.56 Aligned_cols=83 Identities=17% Similarity=0.394 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++|+++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999873 67889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876544
No 80
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=9.6e-15 Score=126.13 Aligned_cols=76 Identities=26% Similarity=0.488 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4679999999999999999999999999999987 35778999999999999999999999999999999999987
Q ss_pred C
Q 004002 265 I 265 (780)
Q Consensus 265 ~ 265 (780)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=130.56 Aligned_cols=83 Identities=20% Similarity=0.460 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHcc------Cccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLRR 256 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Ln------g~~l~g 256 (780)
...+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456799999999999999999999999999999983 46789999999999999999999999 999999
Q ss_pred cccccccCCCCCCC
Q 004002 257 RKLDIHFSIPKDNP 270 (780)
Q Consensus 257 r~I~V~~a~pk~~~ 270 (780)
++|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999887544
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=8.2e-15 Score=128.74 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..-|||+||+..+|+++|+++|.+||+|+++++. .+||||||+|.+.++|++|++.||+..+.|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4579999999999999999999999999999984 479999999999999999999999999999999999993
No 83
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=132.55 Aligned_cols=76 Identities=22% Similarity=0.396 Sum_probs=68.3
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCC--eeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC----ccCCceE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGKRI 344 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~--I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~----~i~Gr~L 344 (780)
.-.+|||+|||+++|+++|+++|++||. |.+|++ ++.+||||||+|.+.++|++||+.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 567764 5778999999999999999999999997 4899999
Q ss_pred EEEecCC
Q 004002 345 KLEPSRP 351 (780)
Q Consensus 345 ~V~~a~~ 351 (780)
.|++|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=126.35 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=72.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 356789999999999999999999999999999999999
Q ss_pred cCC
Q 004002 349 SRP 351 (780)
Q Consensus 349 a~~ 351 (780)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 976
No 85
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=128.04 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
...+.++|||+|||+++|+++|+++|++||+|..|+. ...++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999873 3447999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 265 IPKDNP 270 (780)
Q Consensus 265 ~pk~~~ 270 (780)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 876644
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=129.21 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345689999999999999999999999999999976 456789999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004002 349 SRPGGAR 355 (780)
Q Consensus 349 a~~k~~r 355 (780)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987643
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=130.98 Aligned_cols=81 Identities=22% Similarity=0.471 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999872 57889999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004002 263 FSIPKD 268 (780)
Q Consensus 263 ~a~pk~ 268 (780)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=129.02 Aligned_cols=83 Identities=18% Similarity=0.429 Sum_probs=74.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
...+.++|||+|||+++++++|+++|++||.|..|+. ...++|||||+|.+.++|++|++.|++..|.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3456799999999999999999999999999999873 3447899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 265 IPKDNP 270 (780)
Q Consensus 265 ~pk~~~ 270 (780)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 876543
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=1.4e-14 Score=132.85 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=74.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999875 5667899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 987643
No 90
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=9.4e-15 Score=134.46 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=71.9
Q ss_pred ccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccC-CeeEEEe-CCCcccEEEEEEcCHHHHHHHHHHhC
Q 004002 258 KLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLN 335 (780)
Q Consensus 258 ~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG-~I~~v~~-~g~srG~aFV~F~~~e~A~~Ai~~Ln 335 (780)
++.+.|..+.. ...+|||+|||.++++++|+++|++|| +|..+++ ...++|||||+|.+.++|++||+.||
T Consensus 16 ~~~~~~~~~p~-------~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 16 PRGSHMSKLPA-------KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp ---------CC-------CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTT
T ss_pred ecchhcCCCCC-------CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcC
Confidence 45566654322 356899999999999999999999999 9999988 46789999999999999999999999
Q ss_pred CCccCCceEEEEecCCCc
Q 004002 336 RSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 336 G~~i~Gr~L~V~~a~~k~ 353 (780)
|..+.|++|+|++++...
T Consensus 89 g~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 89 NIEFRGSVITVERDDNPP 106 (111)
T ss_dssp TEEETTEEEEEEESCC--
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999997653
No 91
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=1.3e-14 Score=133.01 Aligned_cols=83 Identities=16% Similarity=0.360 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3346689999999999999999999999999988872 68899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=4.3e-15 Score=130.55 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG--~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.+|||+|||+++|+++|+++|++|| +|.+++ .+++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 888876 378899999999999999999999999999999999999998
Q ss_pred CCCC
Q 004002 266 PKDN 269 (780)
Q Consensus 266 pk~~ 269 (780)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 93
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=126.47 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=73.0
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3568999999999999999999999999999976 45678999999999999999999999999999999999998
Q ss_pred CCch
Q 004002 351 PGGA 354 (780)
Q Consensus 351 ~k~~ 354 (780)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8754
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=127.68 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=75.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCcc-ccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDIH 262 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~-yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~-l~gr~I~V~ 262 (780)
..+.++|||+|||+++|+++|+++|++ ||.|..|+. +++++|||||+|.+.++|++|++.|++.. |.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346799999999999999999999999 999999873 67899999999999999999999999999 999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876543
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.7e-14 Score=124.60 Aligned_cols=75 Identities=27% Similarity=0.462 Sum_probs=70.0
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999975 45578999999999999999999999999999999999985
No 96
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.7e-15 Score=129.84 Aligned_cols=81 Identities=20% Similarity=0.439 Sum_probs=74.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE-E-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-Y-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv-~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
.+.++|||+|||.++++++|+++|++||.|..+ + .+++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999877 5 3577899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9877644
No 97
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=2.8e-14 Score=126.59 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=73.4
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 468999999999999999999999999999986 366789999999999999999999999999999999999998
Q ss_pred Cchh
Q 004002 352 GGAR 355 (780)
Q Consensus 352 k~~r 355 (780)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7644
No 98
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=2.7e-14 Score=128.49 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=73.9
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC---ceEEEE
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG---KRIKLE 347 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G---r~L~V~ 347 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34679999999999999999999999999999976 45568999999999999999999999999998 999999
Q ss_pred ecCCCchh
Q 004002 348 PSRPGGAR 355 (780)
Q Consensus 348 ~a~~k~~r 355 (780)
+++++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987654
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=128.31 Aligned_cols=82 Identities=30% Similarity=0.397 Sum_probs=74.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~---g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
....++|||+|||.++++++|+++|++||.|+.|++. ..++|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 3456799999999999999999999999999999863 3367999999999999999999999999999999999999
Q ss_pred CCchh
Q 004002 351 PGGAR 355 (780)
Q Consensus 351 ~k~~r 355 (780)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 86543
No 100
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=129.80 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999883 567899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 264 SIPKDN 269 (780)
Q Consensus 264 a~pk~~ 269 (780)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.1e-15 Score=133.53 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=71.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG--~~i~Gr~L~V~~a~~k~ 353 (780)
...+|||+|||.++|+++|+++|++||.|++|++.. .||||||+|++.++|++|++.|++ ..+.|++|+|.+++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 457899999999999999999999999999999854 489999999999999999999874 78999999999998765
Q ss_pred hh
Q 004002 354 AR 355 (780)
Q Consensus 354 ~r 355 (780)
..
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 102
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=127.12 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=73.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+ |||..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999986 35678999999999999999998 9999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987643
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=130.22 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=70.9
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~--i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++|+++|+++|++||.|++|++. +.||+|||+|++.++|.+|++.|+|.. +.|++|+|.+++++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 45789999999999999999999999999999985 468999999999999999999999985 789999999998753
No 104
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=1.8e-14 Score=129.92 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=74.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccc---ccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKL 259 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l---~gr~I 259 (780)
.+.+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456799999999999999999999999999999983 577899999999999999999999999987 89999
Q ss_pred ccccCCCCCC
Q 004002 260 DIHFSIPKDN 269 (780)
Q Consensus 260 ~V~~a~pk~~ 269 (780)
.|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 105
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=2.9e-14 Score=130.60 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.8
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
.....+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999976 456789999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004002 349 SRPGGAR 355 (780)
Q Consensus 349 a~~k~~r 355 (780)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9987643
No 106
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.53 E-value=2.1e-14 Score=138.79 Aligned_cols=82 Identities=28% Similarity=0.478 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
....++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999983 688999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++..+
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 107
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=129.94 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=73.5
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345678999999999999999999999999999976 366789999999999999999999999999999999999
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98765
No 108
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=130.15 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346799999999999999999999999999999873 467899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876643
No 109
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=127.24 Aligned_cols=78 Identities=21% Similarity=0.381 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 356799999999999999999999999999999873 478899999999999999999999999999999999999
Q ss_pred CCC
Q 004002 264 SIP 266 (780)
Q Consensus 264 a~p 266 (780)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=124.97 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
.+.++|||+|||.++|+++|+++|++||+|..|+.. +|||||+|.+.++|++|++.|++..|.|++|.|.++.++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 467999999999999999999999999999999864 79999999999999999999999999999999999987664
Q ss_pred C
Q 004002 270 P 270 (780)
Q Consensus 270 ~ 270 (780)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=133.88 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccC--cccccccccccc
Q 004002 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHF 263 (780)
Q Consensus 186 ~~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng--~~l~gr~I~V~~ 263 (780)
.....++++|||+|||+++|+++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3344578999999999999999999999999999998843 3589999999999999999999875 689999999999
Q ss_pred CCCCCCCCC
Q 004002 264 SIPKDNPSD 272 (780)
Q Consensus 264 a~pk~~~s~ 272 (780)
+.++.....
T Consensus 104 a~~k~~~~~ 112 (119)
T 2ad9_A 104 SNHKELKTD 112 (119)
T ss_dssp CSSSSCCCC
T ss_pred ccCCCCCcc
Confidence 987765443
No 112
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=5.6e-15 Score=129.82 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=66.1
Q ss_pred cceeecCCCCCCChhHHHHHhcccC--CeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG--~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
.+|||+|||.++++++|+++|++|| .|.+|++ +++++|||||+|.+.++|++||+.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 8988875 66789999999999999999999999999999999999998
Q ss_pred CCch
Q 004002 351 PGGA 354 (780)
Q Consensus 351 ~k~~ 354 (780)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 113
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=4.9e-15 Score=166.94 Aligned_cols=145 Identities=25% Similarity=0.354 Sum_probs=104.5
Q ss_pred HHHHhhcCCCEEEEEe-------CCCcceEE-----EEEEecHHHHHHHHHHccCccccccc-------------ccccc
Q 004002 209 LRALFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRRK-------------LDIHF 263 (780)
Q Consensus 209 Lr~lF~~yG~I~sv~~-------tgkskG~a-----FV~F~~~e~A~~Al~~Lng~~l~gr~-------------I~V~~ 263 (780)
|..+|.++|+|..|.. ..+..+|+ |+.|....+|..++..++......+. ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999887631 11233444 77887766655555433332221110 01111
Q ss_pred CCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 264 a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
..+...+........+|||+|||..+|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 2222222223344579999999999999999999999999999976 56679999999999999999999999999
Q ss_pred cCCceEEEEecCCCc
Q 004002 339 IAGKRIKLEPSRPGG 353 (780)
Q Consensus 339 i~Gr~L~V~~a~~k~ 353 (780)
|.|+.|.|.++.++.
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 114
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=128.25 Aligned_cols=80 Identities=11% Similarity=0.344 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccc----c
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK----L 259 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~-sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~----I 259 (780)
.+.++|||+|||+++++++|+++|++||+|. .|+ .+++++|||||+|.+.++|++|++.|+|..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999998 876 25789999999999999999999999999999999 9
Q ss_pred ccccCCCCCC
Q 004002 260 DIHFSIPKDN 269 (780)
Q Consensus 260 ~V~~a~pk~~ 269 (780)
+|.|+.+...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987653
No 115
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=124.77 Aligned_cols=76 Identities=30% Similarity=0.444 Sum_probs=70.5
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45679999999999999999999999999999986 3567899999999999999999999999999999999998
Q ss_pred C
Q 004002 350 R 350 (780)
Q Consensus 350 ~ 350 (780)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 116
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=2.2e-14 Score=130.35 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=74.5
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999986 456789999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004002 349 SRPGGAR 355 (780)
Q Consensus 349 a~~k~~r 355 (780)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9877643
No 117
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=128.91 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=74.2
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35679999999999999999999999999999986 3567899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887643
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.8e-14 Score=125.99 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=72.3
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccC--CceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~--Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++++++|+++|++||.|+.|++... +|||||+|.+.++|++|++.|||..+. |++|+|.+++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4578999999999999999999999999999998543 899999999999999999999999999 9999999999875
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.2e-14 Score=126.37 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=74.1
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~---g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
.....++|||+|||.++++++|+++|++||.|+.|++. ..++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34456899999999999999999999999999999873 235899999999999999999999999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 88754
No 120
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=2e-14 Score=130.91 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=81.2
Q ss_pred cccccccccCCCCCCCCCCCCCccceeecCCCCC-CChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 004002 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 255 ~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~-vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
.|.+|.|..+.+.... ......++|||+|||.+ +++++|+++|++||.|+.|++ ++|||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4667777766544332 22334579999999999 999999999999999999998 689999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 004002 334 LNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 334 LnG~~i~Gr~L~V~~a~~k~ 353 (780)
|||..+.|++|+|+++++..
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998654
No 121
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=126.94 Aligned_cols=77 Identities=25% Similarity=0.466 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 346789999999999999999999999999999883 477899999999999999999999999999999999998
Q ss_pred CC
Q 004002 264 SI 265 (780)
Q Consensus 264 a~ 265 (780)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=128.30 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCc--cccccccccccCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHFSI 265 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~--~l~gr~I~V~~a~ 265 (780)
...++++|||+|||+++++++|+++|++||+|..|+.. +.||||||+|.+.++|++|++.|++. .|.|++|.|.|+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34577999999999999999999999999999998853 35899999999999999999999765 4899999999998
Q ss_pred CCCC
Q 004002 266 PKDN 269 (780)
Q Consensus 266 pk~~ 269 (780)
++..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7553
No 123
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=128.63 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=73.6
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34679999999999999999999999999999986 3667899999999999999999999999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87653
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=124.99 Aligned_cols=77 Identities=26% Similarity=0.416 Sum_probs=72.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
...++|||+|||.++++++|+++|++||.|+.|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 79999999999999999999999999999999999988754
No 125
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=1.8e-14 Score=130.97 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446789999999999999999999999999999983 57789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004002 263 FSIPKD 268 (780)
Q Consensus 263 ~a~pk~ 268 (780)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998754
No 126
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.52 E-value=2.6e-14 Score=134.70 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999883 47899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004002 263 FSIPKD 268 (780)
Q Consensus 263 ~a~pk~ 268 (780)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998754
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.5e-14 Score=124.94 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccc--ccccccccCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 266 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~--gr~I~V~~a~p 266 (780)
..+.++|||+|||.++|+++|+++|++||+|..|+... .+|||||+|.+.++|++|++.|++..|. |++|.|.|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 34679999999999999999999999999999998543 3899999999999999999999999999 99999999987
Q ss_pred CC
Q 004002 267 KD 268 (780)
Q Consensus 267 k~ 268 (780)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 128
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=124.59 Aligned_cols=79 Identities=25% Similarity=0.435 Sum_probs=71.7
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeC-----CC-cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PH-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~-----g~-srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
..++|||+|||.++++++|+++|++||.|..|++. +. ++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 45689999999999999999999999999999862 12 7899999999999999999999999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 129
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=128.02 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=72.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~--------g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
..++|||+|||.++++++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45689999999999999999999999999998762 2678999999999999999999999999999999999
Q ss_pred ecCCCch
Q 004002 348 PSRPGGA 354 (780)
Q Consensus 348 ~a~~k~~ 354 (780)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988653
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=129.02 Aligned_cols=79 Identities=24% Similarity=0.511 Sum_probs=73.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999986 34578999999999999999999999999999999999998
Q ss_pred CCch
Q 004002 351 PGGA 354 (780)
Q Consensus 351 ~k~~ 354 (780)
++..
T Consensus 91 ~~~~ 94 (102)
T 1x5s_A 91 KSSD 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 131
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=7.4e-15 Score=131.34 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC--EEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcc----ccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP----LRRRK 258 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~--I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~----l~gr~ 258 (780)
..-.||||+|||+++|+++|+++|++||. |.+|+ .++++||||||+|.+.++|++|++.|++.. |.||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 44565 368899999999999999999999999974 88999
Q ss_pred cccccCCC
Q 004002 259 LDIHFSIP 266 (780)
Q Consensus 259 I~V~~a~p 266 (780)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5e-14 Score=127.90 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=74.4
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhC------CCccCCce
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN------RSDIAGKR 343 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~Ln------G~~i~Gr~ 343 (780)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++||+.|| |..+.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 35679999999999999999999999999999986 35689999999999999999999999 99999999
Q ss_pred EEEEecCCCchh
Q 004002 344 IKLEPSRPGGAR 355 (780)
Q Consensus 344 L~V~~a~~k~~r 355 (780)
|+|.++.++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999987643
No 133
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=127.25 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=72.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
.+.+.++|||+|||+++++++|+++|++||+|..|+. .++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456799999999999999999999999999999872 467899999999999999999999999999999999998
Q ss_pred CC
Q 004002 264 SI 265 (780)
Q Consensus 264 a~ 265 (780)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 134
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=2.9e-14 Score=128.53 Aligned_cols=82 Identities=18% Similarity=0.376 Sum_probs=74.3
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCcc---CCceE
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRI 344 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i---~Gr~L 344 (780)
......+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3445689999999999999999999999999999986 356789999999999999999999999988 89999
Q ss_pred EEEecCCCch
Q 004002 345 KLEPSRPGGA 354 (780)
Q Consensus 345 ~V~~a~~k~~ 354 (780)
+|.+++++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999988754
No 135
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=134.69 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr----~lF~~yG~I~sv~~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
..+.++|||+|||+++++++|+ ++|++||+|.+|.. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3467899999999999999876 69999999999874 57899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004002 263 FSIPKD 268 (780)
Q Consensus 263 ~a~pk~ 268 (780)
|+.++.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 136
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=124.20 Aligned_cols=78 Identities=12% Similarity=0.325 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..++|||+|||.++|+++|+++|++||+|..++. .++++|||||+|.+.++|++|++.|+|..+.|++|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4589999999999999999999999999999873 1238999999999999999999999999999999999999
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=128.58 Aligned_cols=81 Identities=22% Similarity=0.385 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
+.+.++|||+|||.++++++|+++|++||+|..+..+++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34679999999999999999999999999998887788999999999999999999999999999999999999998765
Q ss_pred C
Q 004002 269 N 269 (780)
Q Consensus 269 ~ 269 (780)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 138
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=127.78 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHcc--CccccccccccccCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 266 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Ln--g~~l~gr~I~V~~a~p 266 (780)
..++++|||+|||+++|+++|+++|++||+|..|+.. +.||||||+|.+.++|++|++.|+ +..|.|++|.|.|+.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 3577999999999999999999999999999998743 348999999999999999999875 5679999999999987
Q ss_pred CCCC
Q 004002 267 KDNP 270 (780)
Q Consensus 267 k~~~ 270 (780)
+...
T Consensus 91 ~~~~ 94 (101)
T 2cq1_A 91 KELK 94 (101)
T ss_dssp SSCC
T ss_pred ccCc
Confidence 6543
No 139
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=2.7e-14 Score=125.34 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=73.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
...+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4579999999999999999999999999999876 4567899999999999999999999999999999999999886
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=127.78 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.7
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
.....+|||+|||..+++++|+++|++||.|..+..++.++|||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34567999999999999999999999999998887788889999999999999999999999999999999999998876
Q ss_pred hh
Q 004002 354 AR 355 (780)
Q Consensus 354 ~r 355 (780)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 141
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=129.40 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=73.5
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999875 456789999999999999999999999999999999999
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98864
No 142
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.5e-14 Score=127.14 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=71.2
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHh--CCCccCCceEEEEecCCC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL--NRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~L--nG~~i~Gr~L~V~~a~~k 352 (780)
...++|||+|||.++++++|+++|++||.|+.|++.. .||||||+|++.++|++|++.| ++..+.|++|+|.+++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3557999999999999999999999999999998754 4899999999999999999987 467899999999999876
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 92 ~~ 93 (101)
T 2cq1_A 92 EL 93 (101)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=3.1e-14 Score=131.03 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456799999999999999999999999999999873 47889999999999999999999999999999999999
Q ss_pred cCC
Q 004002 263 FSI 265 (780)
Q Consensus 263 ~a~ 265 (780)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 144
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=4.5e-14 Score=133.64 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=75.1
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
.....++|||+|||.++++++|+++|++||.|+.|++ +++++|||||+|.+.++|++||+.|||..+.|++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445679999999999999999999999999999976 35678999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 004002 348 PSRPGGAR 355 (780)
Q Consensus 348 ~a~~k~~r 355 (780)
+++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987643
No 145
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.2e-14 Score=127.32 Aligned_cols=81 Identities=16% Similarity=0.374 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----C-CCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----A-CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----t-gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
...+.++|||+|||+++|+++|+++|++|| |..|++ + ++++|||||+|.+.++|++|+ .|++..|.|++|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999883 2 788999999999999999999 89999999999999
Q ss_pred ccCCCCCCC
Q 004002 262 HFSIPKDNP 270 (780)
Q Consensus 262 ~~a~pk~~~ 270 (780)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 146
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-14 Score=126.33 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=72.0
Q ss_pred CccceeecCCCCCCChhHHH----HHhcccCCeeEEEeCC--CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~----~~Fs~yG~I~~v~~~g--~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...+|||+|||.++++++|+ ++|++||.|++|++.. ..+|||||+|.+.++|++||+.|||..+.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999 9999999999998742 22899999999999999999999999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 147
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=129.93 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcc--ccccccccccCC
Q 004002 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 265 (780)
Q Consensus 189 e~~s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~--l~gr~I~V~~a~ 265 (780)
..++++|||+|||+ ++|+++|+++|++||+|.+|++. +.+|||||+|.+.++|++|++.|++.. |.|++|.|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 34789999999999 99999999999999999999853 467999999999999999999998754 899999999998
Q ss_pred CCC
Q 004002 266 PKD 268 (780)
Q Consensus 266 pk~ 268 (780)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 644
No 148
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=126.95 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
....+|||+|||.++++++|+++|++||.|....+++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3457999999999999999999999999996333456789999999999999999999999999999999999998865
No 149
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=131.62 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.+.++|||+|||.++|+++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999998873 57889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004002 266 PKDNP 270 (780)
Q Consensus 266 pk~~~ 270 (780)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 150
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=123.84 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3678999999999999999999999999999987 35788999999999999999999999999999999999876
Q ss_pred C
Q 004002 265 I 265 (780)
Q Consensus 265 ~ 265 (780)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=130.01 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=70.1
Q ss_pred CccceeecCCCC-CCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCC
Q 004002 276 NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPG 352 (780)
Q Consensus 276 ~~~~L~V~NLp~-~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~--~i~Gr~L~V~~a~~k 352 (780)
..++|||+|||. ++|+++|+++|++||.|++|++. ..++||||+|++.++|++||+.||+. .+.|++|+|.++++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 457899999999 99999999999999999999985 45799999999999999999999865 599999999999865
Q ss_pred c
Q 004002 353 G 353 (780)
Q Consensus 353 ~ 353 (780)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 152
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=126.97 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=72.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEE-Ee-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v-~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
..++|||+|||.++++++|+++|++||.|..| ++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999888 65 4557899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887643
No 153
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=125.25 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...++|||+|||..+++++|+++|++||.|+.|++ .+.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35679999999999999999999999999999976 34568999999999999999999999999999999999987
Q ss_pred C
Q 004002 351 P 351 (780)
Q Consensus 351 ~ 351 (780)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 154
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=124.84 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=73.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
...+.++|||+|||+++|+++|+++|++||+|..|+.. ++||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 34567999999999999999999999999999999863 569999999999999999999999999999999999876
Q ss_pred CCC
Q 004002 268 DNP 270 (780)
Q Consensus 268 ~~~ 270 (780)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 155
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=128.96 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=74.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
.+.+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++ .|.|++|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4456799999999999999999999999999999883 577899999999999999999999998 8999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
++.++..+
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99775543
No 156
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=127.95 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++++++|+++|++||+|..|+ .+++++|||||+|.+.++|++|++. ++..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345679999999999999999999999999999987 2578899999999999999999998 9999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99887644
No 157
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=9.8e-15 Score=131.10 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccc-cc
Q 004002 191 PSRTLFVRNINS------NVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RK 258 (780)
Q Consensus 191 ~s~tLfVgNLp~------~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g-r~ 258 (780)
.+++|||+|||. ++++++|+++|++||.|.+|+. +++++|||||+|.+.++|++|++.|+|..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999983 48899999999999999999999999999999 99
Q ss_pred cccccCCCC
Q 004002 259 LDIHFSIPK 267 (780)
Q Consensus 259 I~V~~a~pk 267 (780)
|.|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 158
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=4.9e-14 Score=132.77 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=73.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..|.|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999986 3577899999999999999999999999999999999999
Q ss_pred CCCc
Q 004002 350 RPGG 353 (780)
Q Consensus 350 ~~k~ 353 (780)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8865
No 159
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=130.08 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=73.7
Q ss_pred CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 272 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 272 ~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~---g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
......++|||+|||.++++++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344566899999999999999999999999999999873 34689999999999999999999999999999999999
Q ss_pred cCCC
Q 004002 349 SRPG 352 (780)
Q Consensus 349 a~~k 352 (780)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 160
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.3e-14 Score=123.81 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
....++|||+|||.++++++|+++|++||.|+.|++. ++||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998875
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 161
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=126.84 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s--------v~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
..+.++|||+|||.++|+++|+++|++||.|.. ++ .+++++|||||+|.+.++|++|++.|+|..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346799999999999999999999999999988 65 25788999999999999999999999999999
Q ss_pred ccccccccCC
Q 004002 256 RRKLDIHFSI 265 (780)
Q Consensus 256 gr~I~V~~a~ 265 (780)
|++|+|+++.
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999873
No 162
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=125.60 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~--------v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
....+|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35679999999999999999999999999998 765 46678999999999999999999999999999
Q ss_pred ceEEEEecC
Q 004002 342 KRIKLEPSR 350 (780)
Q Consensus 342 r~L~V~~a~ 350 (780)
++|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 163
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=5.5e-14 Score=126.34 Aligned_cols=80 Identities=20% Similarity=0.420 Sum_probs=72.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||+++++++|+++|++|| |..|+. +++++|||||+|.+.++|++|+ .|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45679999999999999999999999997 988872 5788999999999999999999 8999999999999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 164
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=3.1e-14 Score=129.90 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=72.9
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
.....++|||+|||.++++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..+.|+.|+|.+++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34566899999999999999999999999999999986 899999999999999999999999999999999999987
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 165
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=134.29 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--EE-----eCCCcceEEEEEEecHHHHHHHHHHccCc----ccc
Q 004002 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--LY-----TACKHRGFVMISYYDIRAARTAMRALQNK----PLR 255 (780)
Q Consensus 187 ~~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s--v~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~----~l~ 255 (780)
..+.+.++|||+|||+++|+++|+++|++||.|.. |+ .++++||||||+|.+. +|++|++.|+|. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999965 65 3788999999999999 999999999999 999
Q ss_pred ccccccccCCCCCCC
Q 004002 256 RRKLDIHFSIPKDNP 270 (780)
Q Consensus 256 gr~I~V~~a~pk~~~ 270 (780)
|++|.|.++.++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999886543
No 166
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=127.40 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
...+.++|||+|||.++|+++|+++|++||.|.-++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 345679999999999999999999999999995444 3678999999999999999999999999999999999999987
Q ss_pred CCCC
Q 004002 267 KDNP 270 (780)
Q Consensus 267 k~~~ 270 (780)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 167
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.6e-14 Score=127.83 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
..++|||+|||.++++++|+++|++||.|.+++.. +++|||||+|.+.++|++|++.|+|..+.|++|.|.|+.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 46899999999999999999999999999998853 78999999999999999999999999999999999998763
No 168
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.4e-14 Score=127.53 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+.++|||+|||.++++++|+++|++||+|..|+ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34679999999999999999999999999999887 25678999999999999999999999999999999999998
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.+..
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 169
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.8e-14 Score=128.16 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=70.6
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~--~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++++++|+++|++||.|+.|++.. .||||||+|++.++|++|++.|++. .+.|++|+|.+++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 457999999999999999999999999999998753 4899999999999999999999765 5999999999998765
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 170
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=133.22 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=73.6
Q ss_pred CccceeecCCCCCCChhHHH----HHhcccCCeeEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~----~~Fs~yG~I~~v~~--~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...+|||+|||..+++++|+ ++|++||.|.+|.+ +++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 45689999999999999876 69999999999876 4678999999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004002 350 RPGGARR 356 (780)
Q Consensus 350 ~~k~~r~ 356 (780)
+++....
T Consensus 108 ~~~~~~~ 114 (127)
T 2a3j_A 108 ETPQSQV 114 (127)
T ss_dssp CCCCHHH
T ss_pred cCcchhc
Confidence 9876543
No 171
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=125.66 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
...++|||+|||+++|+++|+++|++||.|.....+++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 4568999999999999999999999999986222467899999999999999999999999999999999999998764
No 172
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=129.45 Aligned_cols=83 Identities=22% Similarity=0.373 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEE--------EEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR--------TLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~--------sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l 254 (780)
.+.+.++|||+|||.++|+++|+++|++||.|. .|+ .+++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999998 465 3578899999999999999999999999999
Q ss_pred cccccccccCCCCCCC
Q 004002 255 RRRKLDIHFSIPKDNP 270 (780)
Q Consensus 255 ~gr~I~V~~a~pk~~~ 270 (780)
.|++|.|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876543
No 173
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=4.2e-14 Score=131.64 Aligned_cols=83 Identities=18% Similarity=0.464 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++|+++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3345789999999999999999999999999999983 67889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
|+.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876543
No 174
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=123.46 Aligned_cols=78 Identities=28% Similarity=0.409 Sum_probs=72.2
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
....++|||+|||.++++++|+++|++||.|+.|++. ++||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998765
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.50 E-value=1.3e-14 Score=130.21 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=71.7
Q ss_pred ccceeecCCCC------CCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC-ceE
Q 004002 277 QGTLVVFNLDP------SVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRI 344 (780)
Q Consensus 277 ~~~L~V~NLp~------~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G-r~L 344 (780)
.++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 9999999999999999999986 47789999999999999999999999999999 999
Q ss_pred EEEecCCCc
Q 004002 345 KLEPSRPGG 353 (780)
Q Consensus 345 ~V~~a~~k~ 353 (780)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999997643
No 176
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=130.45 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=72.7
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
..++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999999976 456789999999999999999999999999999999999987
Q ss_pred Cc
Q 004002 352 GG 353 (780)
Q Consensus 352 k~ 353 (780)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 177
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=121.66 Aligned_cols=71 Identities=15% Similarity=0.371 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCcccccc-cccc
Q 004002 192 SRTLFVRNINSNV------EDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 261 (780)
Q Consensus 192 s~tLfVgNLp~~v------teeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr-~I~V 261 (780)
+++|||+|||.++ ++++|+++|++||+|.+++ .+++++|||||+|.+.++|++|++.|+|..|.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3799999999999 7799999999999999987 4678899999999999999999999999999999 8887
Q ss_pred c
Q 004002 262 H 262 (780)
Q Consensus 262 ~ 262 (780)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=4.5e-14 Score=133.64 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=75.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++|+++|+++|++||+|.+|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999873 47789999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 179
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=121.66 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=70.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHc-cCccccccccccccCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSI 265 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~L-ng~~l~gr~I~V~~a~ 265 (780)
.+.+.++|||+|||.++++++|+++|++||+|..|+.. +++|||||+|.+.++|++|++.| ++..+.|++|.|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567999999999999999999999999999999853 46899999999999999999999 9999999999999874
No 180
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=127.40 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCC------CHHHHHHHhhcCCCEEEEE---eCCCcceEEEEEEecHHHHHHHHHHccCcccccc-c
Q 004002 189 EHPSRTLFVRNINSNV------EDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-K 258 (780)
Q Consensus 189 e~~s~tLfVgNLp~~v------teeeLr~lF~~yG~I~sv~---~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr-~ 258 (780)
....++|||+|||+.+ |+++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|+|..|.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999999 7899999999999999988 3678899999999999999999999999999999 9
Q ss_pred cccccCCCCC
Q 004002 259 LDIHFSIPKD 268 (780)
Q Consensus 259 I~V~~a~pk~ 268 (780)
|.|.++...+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987543
No 181
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=2.2e-14 Score=127.06 Aligned_cols=80 Identities=24% Similarity=0.597 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr----~lF~~yG~I~sv~~--tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
..++++|||+|||.++++++|+ ++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467999999999999999999 99999999999974 45789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004002 263 FSIPKD 268 (780)
Q Consensus 263 ~a~pk~ 268 (780)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998754
No 182
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3e-14 Score=127.51 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
..++|||+|||.++++++|+++|++||.|+.|++. .++|||||+|.+.++|++|+..|||..+.|++|+|.+++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35789999999999999999999999999999986 67899999999999999999999999999999999999864
No 183
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=126.11 Aligned_cols=79 Identities=30% Similarity=0.544 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
.+.++|||+|||+++|+++|+++|++||+|..|+. .+.+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 46789999999999999999999999999999875 35689999999999999999999999999999999999987553
No 184
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.6e-14 Score=132.13 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=71.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG--~~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++|+++|+++|++||.|++|++.. .||||||+|++.++|++|++.|++ ..+.|++|+|.+++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999998753 489999999999999999999984 68999999999998765
Q ss_pred hh
Q 004002 354 AR 355 (780)
Q Consensus 354 ~r 355 (780)
.+
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 185
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.1e-14 Score=126.24 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=72.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeC------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~------g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....+|||+|||.++++++|+++|++|| |+.|++. +.++|||||+|.+.++|++|| .|||..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3557999999999999999999999999 9999863 677899999999999999999 9999999999999999
Q ss_pred cCCCchh
Q 004002 349 SRPGGAR 355 (780)
Q Consensus 349 a~~k~~r 355 (780)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987643
No 186
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=4.9e-14 Score=129.66 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|+.|++ +++++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999986 356789999999999999999999999999999999998
Q ss_pred cC
Q 004002 349 SR 350 (780)
Q Consensus 349 a~ 350 (780)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 187
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.1e-14 Score=127.08 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEEe------CCCcceEEEEEEecHHHHHHHHHHcc--Cccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 260 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~-I~sv~~------tgkskG~aFV~F~~~e~A~~Al~~Ln--g~~l~gr~I~ 260 (780)
.+.++|||+|||+++|+++|+++|++||. |..|+. +++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 999884 35789999999999999999999996 5899999999
Q ss_pred cccCCCCCCCC
Q 004002 261 IHFSIPKDNPS 271 (780)
Q Consensus 261 V~~a~pk~~~s 271 (780)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 188
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=2.4e-14 Score=125.82 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.-|||+||++.+||++|+++|.+||+|.+++. ..+||||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999985 458999999999999999999999999999999999987
No 189
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-14 Score=130.17 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=72.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999988872 5788999999999999999999999999999999999999
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8754
No 190
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.1e-14 Score=126.95 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=74.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4579999999999999999999999999999875 45668999999999999999999999999999999999999
Q ss_pred CCchhh
Q 004002 351 PGGARR 356 (780)
Q Consensus 351 ~k~~r~ 356 (780)
++..+.
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 876543
No 191
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=6.5e-14 Score=124.94 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=72.7
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
...++|||+|||.++++++|+++|++||.|+.|++. +.+|||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 355799999999999999999999999999999985 458999999999999999999999999999999999998865
No 192
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=130.07 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~---tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.....++|||+|||.++|+++|+++|++||+|..|+. .++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3456799999999999999999999999999998873 3557999999999999999999999999999999999999
Q ss_pred CCC
Q 004002 265 IPK 267 (780)
Q Consensus 265 ~pk 267 (780)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 193
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=8.2e-14 Score=124.44 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=71.1
Q ss_pred CCccceeecCCCC-CCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 275 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 275 ~~~~~L~V~NLp~-~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
...++|||+|||. ++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3567999999998 99999999999999999999983 8999999999999999999999999999999999998754
No 194
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=125.75 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=75.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
...+.++|||+|||.++|+++|+++|++|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345679999999999999999999999998887776 467899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004002 266 PKDNP 270 (780)
Q Consensus 266 pk~~~ 270 (780)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87643
No 195
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=120.80 Aligned_cols=76 Identities=30% Similarity=0.470 Sum_probs=70.3
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEecC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSR 350 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~L-nG~~i~Gr~L~V~~a~ 350 (780)
+...++|||+|||.++++++|+++|++||.|..|++. .++|||||+|.+.++|++|++.| +|..+.|++|+|++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456799999999999999999999999999999985 35899999999999999999999 9999999999999985
No 196
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=128.31 Aligned_cols=82 Identities=26% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCee--------EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~--------~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~ 340 (780)
....++|||+|||.++++++|+++|++||.|+ .|++ ++.++|||||+|.+.++|++||+.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999998 4764 4567899999999999999999999999999
Q ss_pred CceEEEEecCCCchh
Q 004002 341 GKRIKLEPSRPGGAR 355 (780)
Q Consensus 341 Gr~L~V~~a~~k~~r 355 (780)
|++|+|.+++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987643
No 197
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=131.63 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=72.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~-----g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++. +.++|||||+|.+.++|++|| .|||..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999873 677899999999999999999 99999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 77543
No 198
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.49 E-value=5.7e-14 Score=126.82 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+.++|||+|||+++|+++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35679999999999999999999999999999887 35788999999999999999999999999999999999987
Q ss_pred C
Q 004002 265 I 265 (780)
Q Consensus 265 ~ 265 (780)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 199
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.49 E-value=5e-14 Score=122.65 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 358999999999999999999999999999987 26788999999999999999999 899999999999999987
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 200
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=126.65 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=73.9
Q ss_pred CccceeecCCCCCCChhHHHHHhcc-cCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCc-cCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD-IAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~-yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~-i~Gr~L~V~~a 349 (780)
...+|||+|||.++++++|+++|++ ||.|+.|++ ++.++|||||+|.+.++|++||+.|||.. +.|++|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4578999999999999999999999 999999976 56689999999999999999999999999 99999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
.++..+
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 887644
No 201
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=127.57 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=73.2
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
...++|||+|||.++++++|+++|++||.|..|++... +|||||+|.+.++|++|++.|||..+.|++|+|.+++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34579999999999999999999999999999998644 89999999999999999999999999999999999998764
No 202
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.6e-14 Score=129.10 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCE----EEEE-eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I----~sv~-~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||.++|+++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467999999999999999999999999998 4444 5789999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 203
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.9e-14 Score=127.84 Aligned_cols=81 Identities=12% Similarity=0.310 Sum_probs=72.9
Q ss_pred CCCCccceeecCCCCCCChhHHH---HHhcccCCeeEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~---~~Fs~yG~I~~v~~~g--------~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
+.....+|||+|||.++++++|+ ++|++||.|+.|++.. .++|||||+|.+.++|++||+.|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456799999999999999999 9999999999998632 345899999999999999999999999999
Q ss_pred ceEEEEecCCCc
Q 004002 342 KRIKLEPSRPGG 353 (780)
Q Consensus 342 r~L~V~~a~~k~ 353 (780)
++|+|.+++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 204
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=5.9e-14 Score=130.60 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=74.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....+|||+|||.++|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34679999999999999999999999999999986 5667999999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
.++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 205
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=6.6e-14 Score=125.92 Aligned_cols=77 Identities=25% Similarity=0.478 Sum_probs=72.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCchh
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~r 355 (780)
+.++|||+|||.++|+++|+++|++||.|+.|++. ++||||+|.+.++|++||+.|||..+.|+.|+|.+++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45799999999999999999999999999999985 679999999999999999999999999999999999987654
No 206
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=122.94 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=71.6
Q ss_pred CCccceeecCCCCCCChhHHHHHhccc--CCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~y--G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
...++|||+|||..+++++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|.+++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356799999999999999999999999 999999874 789999999999999999999999999999999999886
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 207
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=8.4e-14 Score=125.24 Aligned_cols=78 Identities=26% Similarity=0.502 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
.+.++|||+|||+++|+++|+++|++||+|..|+.. +|||||+|.+.++|++|++.|++..|.|++|.|.|+.++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 467999999999999999999999999999999853 68999999999999999999999999999999999987654
Q ss_pred C
Q 004002 270 P 270 (780)
Q Consensus 270 ~ 270 (780)
.
T Consensus 86 ~ 86 (103)
T 2dgu_A 86 K 86 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 208
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=6.5e-14 Score=121.95 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999875 5667999999999999999999 999999999999999998
Q ss_pred CC
Q 004002 351 PG 352 (780)
Q Consensus 351 ~k 352 (780)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 209
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=125.93 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=72.6
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
....++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++||+.|||..+.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345689999999999999999999999999854443 6678999999999999999999999999999999999999887
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 210
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=125.35 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEeC--CCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr----~lF~~yG~I~sv~~t--gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..++|||+|||+++++++|+ ++|++||+|.+|+.. ...+|||||+|.+.++|++|++.|+|..|.|++|+|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45899999999999999999 999999999999842 222899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 265 IPKDNP 270 (780)
Q Consensus 265 ~pk~~~ 270 (780)
.+...+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 211
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=126.24 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34579999999999999999999999999999875 34568999999999999999999999999999999999998
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 212
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.48 E-value=2.4e-14 Score=135.85 Aligned_cols=84 Identities=27% Similarity=0.469 Sum_probs=76.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999873 57899999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 004002 263 FSIPKDNPS 271 (780)
Q Consensus 263 ~a~pk~~~s 271 (780)
|+.++..+.
T Consensus 123 ~a~~~~~~~ 131 (135)
T 2lea_A 123 MARYGRPPD 131 (135)
T ss_dssp ECCCCCCCT
T ss_pred ECCCCCCCc
Confidence 998765443
No 213
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=124.38 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....+|||+|||.++++++|+++|++|| |+.|++ ++.++|||||+|.+.++|++|| .|||..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567999999999999999999999997 999876 4667899999999999999999 89999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88754
No 214
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.3e-14 Score=125.03 Aligned_cols=78 Identities=24% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 190 HPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 190 ~~s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
.+.++|||+|||+ ++|+++|+++|++||+|..|+. ++|||||+|.+.++|++|++.|++..+.|++|.|.++.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4679999999998 9999999999999999999986 48999999999999999999999999999999999998765
Q ss_pred CC
Q 004002 269 NP 270 (780)
Q Consensus 269 ~~ 270 (780)
.+
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 215
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.1e-14 Score=127.58 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=72.9
Q ss_pred CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 273 ~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
++...++|||+|||.++++++|+++|++||.|+.|++ +++++|||||+|.+.++|++||+.|++ .+.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4456689999999999999999999999999999986 456789999999999999999999998 8999999999
Q ss_pred ecCCCc
Q 004002 348 PSRPGG 353 (780)
Q Consensus 348 ~a~~k~ 353 (780)
++.++.
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 998754
No 216
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=121.98 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
..+.++|||+|||+++|+++|+++|++||+|..|+.. ++||||+|.+.++|++|++.|++..+.|++|.|.++.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3467899999999999999999999999999999864 5699999999999999999999999999999999998765
Q ss_pred C
Q 004002 269 N 269 (780)
Q Consensus 269 ~ 269 (780)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=126.68 Aligned_cols=78 Identities=18% Similarity=0.399 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
....++|||+|||.++++++|+++|++|| |.+|+. +++++|||||+|.+.++|++|+ .|+|..|.|++|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34669999999999999999999999999 999983 5778999999999999999999 899999999999999
Q ss_pred cCCCCC
Q 004002 263 FSIPKD 268 (780)
Q Consensus 263 ~a~pk~ 268 (780)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 218
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-14 Score=125.31 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=72.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCee-EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce----EE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR----IK 345 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~-~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~----L~ 345 (780)
..++|||+|||.++++++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 467999999999999999999999999999 8875 4667899999999999999999999999999999 99
Q ss_pred EEecCCCc
Q 004002 346 LEPSRPGG 353 (780)
Q Consensus 346 V~~a~~k~ 353 (780)
|.++++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998764
No 219
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=124.03 Aligned_cols=84 Identities=23% Similarity=0.401 Sum_probs=74.5
Q ss_pred CCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEE--eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 272 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 272 ~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~--~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
......++|||+|||.++++++|+++|+.|+.|..++ .++.++|||||+|.+.++|++||+.|||..|.|++|+|.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3445668999999999999999999999998777665 36678899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987643
No 220
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=125.42 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccc-----ccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g-----r~I~V~~ 263 (780)
....++|||+|||+++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.|++..|.| ++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 346789999999999999999999999999999985333 999999999999999999999999999 9999999
Q ss_pred CCCCCCC
Q 004002 264 SIPKDNP 270 (780)
Q Consensus 264 a~pk~~~ 270 (780)
+.++...
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9886543
No 221
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=125.79 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccc--------cc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------RR 256 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l--------~g 256 (780)
+.+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 446799999999999999999999999999999873 578899999999999999999999999999 56
Q ss_pred cccccccCCCC
Q 004002 257 RKLDIHFSIPK 267 (780)
Q Consensus 257 r~I~V~~a~pk 267 (780)
++|.|.|+.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888888754
No 222
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=126.46 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCccceeecCCCCCC------ChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eE
Q 004002 275 LNQGTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RI 344 (780)
Q Consensus 275 ~~~~~L~V~NLp~~v------teedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr-~L 344 (780)
...++|||+|||..+ ++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 345789999999999 78999999999999999986 456789999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 004002 345 KLEPSRPG 352 (780)
Q Consensus 345 ~V~~a~~k 352 (780)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 223
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=9.6e-14 Score=123.99 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 189 e~~s~tLfVgNLp~-~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
..+.++|||+|||. ++++++|+++|++||.|..++. .+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34679999999998 9999999999999999999986 4899999999999999999999999999999999998764
No 224
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=124.52 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....+|||+|||.++++++|+++|++||.|+.++ .++.++|||||+|.+.++|++||+.|||..+.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3457899999999999999999999999986543 25677899999999999999999999999999999999999
Q ss_pred CCC
Q 004002 350 RPG 352 (780)
Q Consensus 350 ~~k 352 (780)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 225
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=8.7e-14 Score=126.43 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=71.4
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCC-----ceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-----KRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G-----r~L~V~~a~ 350 (780)
...+|||+|||.++++++|+++|++||.|+.|++... |||||+|.+.++|++||+.|||..+.| +.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4578999999999999999999999999999998544 999999999999999999999999999 999999999
Q ss_pred CCch
Q 004002 351 PGGA 354 (780)
Q Consensus 351 ~k~~ 354 (780)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 226
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.6e-14 Score=130.78 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccC--ccccccccccccCC
Q 004002 189 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 265 (780)
Q Consensus 189 e~~s~tLfVgNLp~~-vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng--~~l~gr~I~V~~a~ 265 (780)
..++++|||+|||++ +|+++|+++|++||+|.+|++ .++||||||+|.+.++|++|++.|++ ..|.|++|.|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 457899999999998 999999999999999999985 46799999999999999999999875 45999999999997
Q ss_pred CCCC
Q 004002 266 PKDN 269 (780)
Q Consensus 266 pk~~ 269 (780)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6553
No 227
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=126.02 Aligned_cols=80 Identities=14% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
...++|||+|||.++++++|+.+|++||.|..|+... .+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 4568999999999999999999999999999998533 389999999999999999999999999999999999987654
Q ss_pred C
Q 004002 270 P 270 (780)
Q Consensus 270 ~ 270 (780)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 228
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-14 Score=128.32 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=71.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
..++|||+|||.++++++|+++|++||.|+.|++. .+++||||+|.+.++|++||+.|||..+.|++|+|++++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 45799999999999999999999999999999985 57899999999999999999999999999999999999764
No 229
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=5.4e-14 Score=124.61 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=73.5
Q ss_pred CccceeecCCCCCCChhHHH----HHhcccCCeeEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~----~~Fs~yG~I~~v~~~--g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
..++|||+|||.++++++|+ ++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999 999999999999873 456899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++...
T Consensus 87 ~~~~~~ 92 (97)
T 1nu4_A 87 KTDSDI 92 (97)
T ss_dssp SSCCTH
T ss_pred cCCCcc
Confidence 987644
No 230
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.7e-14 Score=124.81 Aligned_cols=77 Identities=29% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCccceeecCCCC-CCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 275 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 275 ~~~~~L~V~NLp~-~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
...++|||+|||. .+++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 99999999999999999999983 8999999999999999999999999999999999998765
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.4e-14 Score=127.72 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=73.0
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCe----eEEE-eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I----~~v~-~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....+|||+|||.++|+++|+++|++||.| ..++ .++.++|||||+|.+.++|++||+.|||..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 345799999999999999999999999998 4554 37888999999999999999999999999999999999999
Q ss_pred CCCchh
Q 004002 350 RPGGAR 355 (780)
Q Consensus 350 ~~k~~r 355 (780)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987643
No 232
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=1.1e-13 Score=133.80 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=74.2
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..|.|++|+|++++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5579999999999999999999999999999987 46678999999999999999999999999999999999998
Q ss_pred CCchh
Q 004002 351 PGGAR 355 (780)
Q Consensus 351 ~k~~r 355 (780)
+...+
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 86543
No 233
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-14 Score=128.81 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEe--------CCCcceEEEEEEecHHHHHHHHHHccCccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr---~lF~~yG~I~sv~~--------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~ 258 (780)
...++|||+|||+++++++|+ ++|++||+|..|+. .++++|||||+|.+.++|++|++.|++..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 99999999999873 2256799999999999999999999999999999
Q ss_pred cccccCCCCC
Q 004002 259 LDIHFSIPKD 268 (780)
Q Consensus 259 I~V~~a~pk~ 268 (780)
|.|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 234
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.6e-14 Score=126.12 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
....++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999985432 4678999999999999999999999999999999999999
Q ss_pred CCCC
Q 004002 264 SIPK 267 (780)
Q Consensus 264 a~pk 267 (780)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 235
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=2.5e-13 Score=126.25 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...++|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45579999999999999999999999999999976 45578999999999999999999999999999999999998
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 236
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=126.21 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe------CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~------~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
...++|||+|||.++++++|+++|++|| |++|++ +++++|||||+|.+.++|++|| .|||..+.|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3567999999999999999999999999 999986 4557899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 237
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=4.4e-14 Score=129.43 Aligned_cols=77 Identities=13% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
...++|||+|||+++|+++|+++|++||.|..|+. .+++|||||+|.+.++|++|++.|+|..|.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34689999999999999999999999999999985 358999999999999999999999999999999999998653
No 238
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2e-13 Score=121.76 Aligned_cols=77 Identities=21% Similarity=0.420 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~y--G~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
.+.++|||+|||+++|+++|+++|++| |.|..|+. .+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 467899999999999999999999999 99999874 4799999999999999999999999999999999999876
Q ss_pred CC
Q 004002 268 DN 269 (780)
Q Consensus 268 ~~ 269 (780)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 239
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=3.6e-14 Score=126.96 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=71.5
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
++|||+|||.++|+++|+++|++||.|+.|++...++|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 3799999999999999999999999999998755578999999999999999999999999999999999998865
No 240
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4e-14 Score=124.73 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=70.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCC-eeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC-CccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR-SDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~-I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG-~~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..+.|++|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4578999999999999999999999999 666665 3689999999999999999999999 99999999999998875
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 241
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.47 E-value=1.3e-13 Score=124.56 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=70.0
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...+|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4579999999999999999999999999999875 45678999999999999999999999999999999999985
No 242
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=6.2e-14 Score=127.88 Aligned_cols=79 Identities=24% Similarity=0.509 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
.+.+.++|||+|||.++|+++|+++|++||+|..|+.. +|||||+|.+.++|++|++.|+|..+.|++|.|.|+.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 44567999999999999999999999999999998864 899999999999999999999999999999999999876
Q ss_pred CC
Q 004002 268 DN 269 (780)
Q Consensus 268 ~~ 269 (780)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 243
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.1e-14 Score=129.20 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=70.7
Q ss_pred CccceeecCCCCC-CChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCC
Q 004002 276 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPG 352 (780)
Q Consensus 276 ~~~~L~V~NLp~~-vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG--~~i~Gr~L~V~~a~~k 352 (780)
..++|||+|||.+ +++++|+++|++||.|++|++. ++||||||+|++.++|++|++.|++ ..+.|++|+|.+++++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 4579999999998 9999999999999999999985 5689999999999999999999864 5699999999999876
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 103 ~~ 104 (112)
T 1x4f_A 103 KK 104 (112)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 244
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.47 E-value=1.6e-14 Score=134.15 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=71.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|| .|||..+.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999875 5677999999999999999999 899999999999999998
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 245
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=4.3e-14 Score=130.02 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEe-CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG-~I~sv~~-tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
..++|||+|||+++|+++|+++|++|| +|..+++ ..+++|||||+|.+.++|++|++.|+|..|.|++|.|.++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 458999999999999999999999999 8999885 4678999999999999999999999999999999999998643
No 246
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.47 E-value=8.1e-14 Score=121.07 Aligned_cols=75 Identities=19% Similarity=0.393 Sum_probs=68.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
+.+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++ +++..|.|++|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 456799999999999999999999999999999872 58889999999999999999997 588889999999987
Q ss_pred C
Q 004002 264 S 264 (780)
Q Consensus 264 a 264 (780)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 247
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=6.8e-14 Score=136.21 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=71.9
Q ss_pred CccceeecCCCCCCChhHHHHHhcccC--CeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG--~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
...+|||+|||.++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346999999999999999999999999 8999876 677899999999999999999999999999999999999
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 248
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.7e-14 Score=124.26 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEEeCCCcceEEEEEEecHHHHHHHHHHccC-ccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~-I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng-~~l~gr~I~V~~a~pk 267 (780)
.+.++|||+|||.++|+++|+++|++||+ |..+.. .++|||||+|.+.++|++|++.|++ ..|.|++|.|.|+.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 45689999999999999999999999999 555543 4789999999999999999999999 9999999999999876
Q ss_pred CCC
Q 004002 268 DNP 270 (780)
Q Consensus 268 ~~~ 270 (780)
...
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 249
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9e-14 Score=125.21 Aligned_cols=80 Identities=33% Similarity=0.473 Sum_probs=73.2
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 445679999999999999999999999999999875 456789999999999999999998 99999999999999
Q ss_pred cCCCch
Q 004002 349 SRPGGA 354 (780)
Q Consensus 349 a~~k~~ 354 (780)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 998764
No 250
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=125.58 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=71.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
+...++|||+|||.++|+++|+++|++||.|..|++ .+.++|||||+|.+.++|++||. ++|..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999976 26689999999999999999999 9999999999999988
Q ss_pred CCC
Q 004002 350 RPG 352 (780)
Q Consensus 350 ~~k 352 (780)
..-
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 251
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=1.4e-13 Score=133.01 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++||+.|++..|.|++|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999884 5789999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004002 265 IPKDN 269 (780)
Q Consensus 265 ~pk~~ 269 (780)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 252
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.9e-14 Score=126.75 Aligned_cols=76 Identities=12% Similarity=0.306 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
...++|||+|||+++|+++|+++|++||+|.+|+. .++++|||||+|.+.++|++|++ +++..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 35689999999999999999999999999999872 37899999999999999999999 89999999999998864
Q ss_pred C
Q 004002 266 P 266 (780)
Q Consensus 266 p 266 (780)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 253
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=121.44 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=71.0
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
...++|||+|| ++++++|+++|++||.|..|++ +.++|||||+|.+.++|++||+.|||..+.|++|+|.+++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 35579999996 8999999999999999999998 47789999999999999999999999999999999999988653
No 254
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=2.9e-14 Score=125.89 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||+++|+++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999986433 35789999999999999999999999999999999999987
Q ss_pred C
Q 004002 265 I 265 (780)
Q Consensus 265 ~ 265 (780)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 255
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.46 E-value=6.6e-14 Score=118.21 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.6
Q ss_pred ceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ |||..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999975 56678999999999999999998 9999999999999875
No 256
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.46 E-value=1.4e-13 Score=119.55 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=68.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +++..+.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 46778999999999999999996 588899999999987
Q ss_pred c
Q 004002 349 S 349 (780)
Q Consensus 349 a 349 (780)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 257
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=136.17 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG--~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++||+.|+|..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999873 688999999999999999999999999999999999999
Q ss_pred CCCC
Q 004002 264 SIPK 267 (780)
Q Consensus 264 a~pk 267 (780)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 258
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=1.6e-13 Score=131.70 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
..+.++|||+|||+++|+++|+++|++||+|.+|+....++|||||+|.+.++|++|++.|+|..|.|++|.|.|+.++.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 45679999999999999999999999999999999766689999999999999999999999999999999999998754
No 259
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.4e-14 Score=125.24 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=67.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.+ |++|++.|+|..+.|++|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999873 4788999999999999 99999999999999999999999875
Q ss_pred CC
Q 004002 268 DN 269 (780)
Q Consensus 268 ~~ 269 (780)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 260
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.3e-13 Score=124.40 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCcc--------CCc
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI--------AGK 342 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i--------~Gr 342 (780)
....+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45579999999999999999999999999999976 456789999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 004002 343 RIKLEPSRPG 352 (780)
Q Consensus 343 ~L~V~~a~~k 352 (780)
.|.|.+++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 261
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=122.18 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++ ++..|.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999872 58899999999999999999999 4778999999999
Q ss_pred cCCCCCCC
Q 004002 263 FSIPKDNP 270 (780)
Q Consensus 263 ~a~pk~~~ 270 (780)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887654
No 262
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.1e-13 Score=130.62 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=70.8
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~-aFV~F~~~e~A~~Ai~~LnG~~i~G--r~L~V~~a~~k~ 353 (780)
-.|||+||+..+|+++|+++|++||.|.+|++..+++|+ |||+|.+.++|++|++.|||..|.| ++|+|.+++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 468899999999999999999999999999886666788 9999999999999999999999988 899999999864
No 263
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.46 E-value=1.2e-13 Score=126.09 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=70.9
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.+ +..+.|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999986 3667899999999999999999986 5999999999999
Q ss_pred cCCCchh
Q 004002 349 SRPGGAR 355 (780)
Q Consensus 349 a~~k~~r 355 (780)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987643
No 264
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=121.45 Aligned_cols=78 Identities=9% Similarity=0.220 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
....++|||+|||+++|+++|+++|++| .|..|+ .+++++|||||+|.+.++|++|++ |++..|.|++|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3466899999999999999999999999 888876 367889999999999999999999 9999999999999998
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7754
No 265
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=132.45 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=72.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeE--EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC----ccCCc
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGK 342 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~--v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~----~i~Gr 342 (780)
....++|||+|||.++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|++||+.|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 764 677899999999999 999999999999 99999
Q ss_pred eEEEEecCCCc
Q 004002 343 RIKLEPSRPGG 353 (780)
Q Consensus 343 ~L~V~~a~~k~ 353 (780)
+|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 266
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=120.39 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
..+.++|||+|| ++|+++|+++|++||+|..|++ ++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 346789999996 9999999999999999999986 5789999999999999999999999999999999999998765
Q ss_pred CC
Q 004002 269 NP 270 (780)
Q Consensus 269 ~~ 270 (780)
..
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 267
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=5.5e-14 Score=124.05 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=68.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...+|||+|||.++++++|+++|++||.|+.+++ ++.++|||||+|.+.++|++||+.|||..+.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3479999999999999999999999999876542 45778999999999999999999999999999999999986
Q ss_pred C
Q 004002 351 P 351 (780)
Q Consensus 351 ~ 351 (780)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 268
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=5.4e-14 Score=118.78 Aligned_cols=70 Identities=16% Similarity=0.401 Sum_probs=65.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
+|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++ |++..+.|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999872 67889999999999999999998 9999999999999875
No 269
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=9.5e-14 Score=126.68 Aligned_cols=80 Identities=16% Similarity=0.420 Sum_probs=70.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.+ +..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 346799999999999999999999999999999983 4788999999999999999999976 5899999999999
Q ss_pred CCCCCC
Q 004002 264 SIPKDN 269 (780)
Q Consensus 264 a~pk~~ 269 (780)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 270
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=1.3e-13 Score=125.55 Aligned_cols=76 Identities=25% Similarity=0.510 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCC
Q 004002 190 HPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (780)
Q Consensus 190 ~~s~tLfVgNLp~~-vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~ 268 (780)
...++|||+|||++ +|+++|+++|++||+|..|+. ++|||||+|.+.++|++|++.|++..|.|++|.|.++.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 35589999999999 999999999999999999987 78999999999999999999999999999999999997544
No 271
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4e-14 Score=122.49 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=69.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3568999999999999999999999999999975 45678999999999999999999999999999999988765
Q ss_pred C
Q 004002 351 P 351 (780)
Q Consensus 351 ~ 351 (780)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 272
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.5e-14 Score=128.14 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=72.2
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+. ++..|.|++|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34579999999999999999999999999999976 356789999999999999999998 999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
+++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 98764
No 273
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.45 E-value=5.9e-14 Score=120.70 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=64.0
Q ss_pred cceeecCCCCCC------ChhHHHHHhcccCCeeEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEE
Q 004002 278 GTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKL 346 (780)
Q Consensus 278 ~~L~V~NLp~~v------teedL~~~Fs~yG~I~~v~~---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr-~L~V 346 (780)
++|||+|||..+ ++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 579999999999 67999999999999999976 456789999999999999999999999999999 8876
No 274
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=1.3e-13 Score=128.07 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456789999999999999999999999999998873 5778999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004002 265 IPKDN 269 (780)
Q Consensus 265 ~pk~~ 269 (780)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87543
No 275
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=124.41 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=72.3
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCC-eeEEEeC------CCcccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKL 346 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~-I~~v~~~------g~srG~aFV~F~~~e~A~~Ai~~Ln--G~~i~Gr~L~V 346 (780)
..++|||+|||.++++++|+++|++||. |+.|++. +.++|||||+|.+.++|++|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9999864 4678999999999999999999996 58999999999
Q ss_pred EecCCCch
Q 004002 347 EPSRPGGA 354 (780)
Q Consensus 347 ~~a~~k~~ 354 (780)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998764
No 276
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-13 Score=122.62 Aligned_cols=78 Identities=12% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE-EE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s-v~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
...++|||+|||+++|+++|+++|++||.|.. |+ .+++++|||||+|.+.++|++||+. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 65 3688999999999999999999997 999999999999988
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 277
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=129.31 Aligned_cols=77 Identities=26% Similarity=0.490 Sum_probs=70.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||.++|+++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999983 47789999999999999999999999999999999998
Q ss_pred cC
Q 004002 263 FS 264 (780)
Q Consensus 263 ~a 264 (780)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 278
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=6.3e-14 Score=125.37 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE----EeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv----~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.+.++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..|.|++|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 456899999999999999999999999977551 1457899999999999999999999 99999999999999998
Q ss_pred CCCC
Q 004002 266 PKDN 269 (780)
Q Consensus 266 pk~~ 269 (780)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 279
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=1.2e-13 Score=120.69 Aligned_cols=76 Identities=13% Similarity=0.302 Sum_probs=70.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++++++|+++|++| .|+.|++. +++|||||+|.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 35689999999999999999999999 99999885 789999999999999999999999999999999999997653
No 280
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=119.21 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
....+|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++||+ |||..+.|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 345789999999999999999999999 9999875 46678999999999999999999 99999999999999998
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 281
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.43 E-value=4.6e-14 Score=123.46 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=67.4
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.+ |++|++.|||..+.|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999986 3677999999999999 99999999999999999999999876
Q ss_pred c
Q 004002 353 G 353 (780)
Q Consensus 353 ~ 353 (780)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 282
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=5.1e-14 Score=119.23 Aligned_cols=71 Identities=17% Similarity=0.424 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999998877 257889999999999999999999999 9999999999886
No 283
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=2.2e-13 Score=133.32 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=70.4
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~-g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G--r~L~V~~a~~k~ 353 (780)
..+|||+||+..+|+++|+++|++||+|++|++. ..++|||||+|.+.++|++|++.|||..|.| ++|+|++++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4579999999999999999999999999999874 4457899999999999999999999999965 999999999864
No 284
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=126.82 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.7
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999986 356789999999999999999999999999999999987
Q ss_pred c
Q 004002 349 S 349 (780)
Q Consensus 349 a 349 (780)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 285
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=119.10 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=70.4
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEE-e-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-E-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~-~-~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
...+|||+|||.++++++|+++|++||.|+.|+ + .....+.|||+|.+.++|++|++.|||..+.|++|+|.++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457899999999999999999999999999995 4 33345669999999999999999999999999999999999874
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=7.4e-14 Score=124.92 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEE----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v----~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
....+|||+|||.++++++|+++|++||.|..+ +.++.++|||||+|.+.++|++||+ |||..+.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 346799999999999999999999999988662 2356789999999999999999998 99999999999999999
Q ss_pred CCchh
Q 004002 351 PGGAR 355 (780)
Q Consensus 351 ~k~~r 355 (780)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 287
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=9.7e-14 Score=121.34 Aligned_cols=76 Identities=16% Similarity=0.371 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
...++|||+|||+++++++|+++|++| +|..++.. +++|||||+|.+.++|++|++.|+|..+.|++|+|.++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356899999999999999999999999 99988763 89999999999999999999999999999999999998643
No 288
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=2.6e-13 Score=125.84 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999998873 6888999999999999999999 799999999999999987
Q ss_pred CCC
Q 004002 266 PKD 268 (780)
Q Consensus 266 pk~ 268 (780)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 289
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=3.5e-13 Score=127.22 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=71.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceE-EEEEEecHHHHHHHHHHccCccccc--cccccccCCCCCC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 269 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~-aFV~F~~~e~A~~Al~~Lng~~l~g--r~I~V~~a~pk~~ 269 (780)
-.|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.+ ++|+|.|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 578899999999999999999999999999865567888 9999999999999999999999988 8999999988654
Q ss_pred C
Q 004002 270 P 270 (780)
Q Consensus 270 ~ 270 (780)
.
T Consensus 109 ~ 109 (130)
T 3zzy_A 109 N 109 (130)
T ss_dssp C
T ss_pred e
Confidence 3
No 290
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.6e-13 Score=119.57 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=71.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
....++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+ ++..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345678999999999999999999999999999976 46778999999999999999999 57899999999999
Q ss_pred cCCCch
Q 004002 349 SRPGGA 354 (780)
Q Consensus 349 a~~k~~ 354 (780)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988754
No 291
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-13 Score=116.78 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=66.2
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
++|||+|||.++++++|+++|++||.|..|++ ++.++|+|||+|.+.++|++|++.++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999999999875 45678999999999999999999999 9999999999987
No 292
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.42 E-value=2.5e-13 Score=132.77 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=73.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...+.++|||+|||+++|+++|+.+|++||.|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999873 67789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004002 263 FSIPKDN 269 (780)
Q Consensus 263 ~a~pk~~ 269 (780)
|+.++..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987654
No 293
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=1.4e-13 Score=131.05 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=69.6
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCC---eeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~---I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
...+|||+|||.++|+++|+++|++||. |+.|++ .++++|||||+|.+.++|++||+ |||..+.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4578999999999999999999999999 777764 46788999999999999999999 999999999999999
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
+.++.
T Consensus 122 a~~~e 126 (136)
T 2hgl_A 122 SHRTE 126 (136)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 86543
No 294
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=4e-13 Score=125.99 Aligned_cols=75 Identities=25% Similarity=0.257 Sum_probs=68.3
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~-aFV~F~~~e~A~~Ai~~LnG~~i~G--r~L~V~~a~~k~ 353 (780)
-.|||+||+..+++++|+++|++||.|++|++..+ .|+ |||+|.+.++|++|+++|||..|.| +.|+|.+|+++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 35789999999999999999999999999987544 586 9999999999999999999999987 699999999875
No 295
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.2e-13 Score=118.13 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk 267 (780)
...++|||+|||+++|+++|+++|++||+|..|+ ...+..|.|||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468999999999999999999999999999994 34445667999999999999999999999999999999999876
Q ss_pred C
Q 004002 268 D 268 (780)
Q Consensus 268 ~ 268 (780)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 296
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=4.5e-13 Score=131.18 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC-CCcceEEEEEEecHHHHHHHHHHccCccccc--cccccccCCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 267 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~t-gkskG~aFV~F~~~e~A~~Al~~Lng~~l~g--r~I~V~~a~pk 267 (780)
...+|||+||++.+|+++|+++|++||+|.+|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|.|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34679999999999999999999999999999853 4468999999999999999999999999965 99999999987
Q ss_pred CCC
Q 004002 268 DNP 270 (780)
Q Consensus 268 ~~~ 270 (780)
...
T Consensus 125 ~l~ 127 (164)
T 1sjr_A 125 SLN 127 (164)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 297
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=129.77 Aligned_cols=80 Identities=19% Similarity=0.386 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE----------EeCCCcceEEEEEEecHHHHHHHHHHccCcccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----------YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv----------~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I 259 (780)
.+.++|||+|||+++|+++|+.+|++||.|..+ ..+++++|||||+|.+.++|++|++.|+|..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 467899999999999999999999999987542 2578999999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 004002 260 DIHFSIPKDN 269 (780)
Q Consensus 260 ~V~~a~pk~~ 269 (780)
.|.|+.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999977543
No 298
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-13 Score=126.45 Aligned_cols=77 Identities=17% Similarity=0.389 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
...++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|+ .|++..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999984 3789999999999999999999 89999999999999998
Q ss_pred CCC
Q 004002 265 IPK 267 (780)
Q Consensus 265 ~pk 267 (780)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 299
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.8e-13 Score=125.61 Aligned_cols=79 Identities=19% Similarity=0.441 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++||+. ++..|.|++|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999988872 478899999999999999999997 9999999999999998
Q ss_pred CCCCC
Q 004002 266 PKDNP 270 (780)
Q Consensus 266 pk~~~ 270 (780)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 87643
No 300
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.4e-13 Score=119.96 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=70.7
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~-v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....+|||+|||.++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34579999999999999999999999999987 765 677899999999999999999997 999999999999998
Q ss_pred CCCc
Q 004002 350 RPGG 353 (780)
Q Consensus 350 ~~k~ 353 (780)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7643
No 301
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-13 Score=118.21 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=67.1
Q ss_pred CCcE-EEEeCCCCCCCHHH----HHHHhhcC-CCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 191 PSRT-LFVRNINSNVEDSE----LRALFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 191 ~s~t-LfVgNLp~~vteee----Lr~lF~~y-G~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
++.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4555 99999999999988 55899999 599998 34 99999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004002 265 IPKDNP 270 (780)
Q Consensus 265 ~pk~~~ 270 (780)
..+.+.
T Consensus 82 ~~~sd~ 87 (96)
T 2diu_A 82 PKNREL 87 (96)
T ss_dssp CCSCCC
T ss_pred CCCcce
Confidence 876543
No 302
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=5.6e-13 Score=117.25 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=63.8
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc--CCceEEEEecCCC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI--AGKRIKLEPSRPG 352 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i--~Gr~L~V~~a~~k 352 (780)
....+|||+|||.++|+++|+++|++||.|++|++...+||||||+|++.++|++ |+|..+ .|++|.|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3457999999999999999999999999999999877789999999999999983 566654 5999999999987
Q ss_pred ch
Q 004002 353 GA 354 (780)
Q Consensus 353 ~~ 354 (780)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 303
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.8e-13 Score=124.25 Aligned_cols=78 Identities=17% Similarity=0.320 Sum_probs=69.7
Q ss_pred CCCCcEEEE--eCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccc-----ccccccc
Q 004002 189 EHPSRTLFV--RNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLDI 261 (780)
Q Consensus 189 e~~s~tLfV--gNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l-----~gr~I~V 261 (780)
..++++||| +||++++|+++|+++|++||+|..|+.. ..||||||+|.+.++|++|+++|+|+.| .+++|.|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 356789999 6699999999999999999999998853 4689999999999999999999999988 6899999
Q ss_pred ccCCCC
Q 004002 262 HFSIPK 267 (780)
Q Consensus 262 ~~a~pk 267 (780)
.|+...
T Consensus 101 ~~a~~~ 106 (114)
T 2cq2_A 101 NFVEKV 106 (114)
T ss_dssp EEESCC
T ss_pred EecccC
Confidence 988643
No 304
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=115.30 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
...++|||+|||+++|+++|+++|++||+|..|........||||+|.+.++|++|++ |++..|.|++|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3568999999999999999999999999999985322211199999999999999999 999999999999999876554
Q ss_pred C
Q 004002 270 P 270 (780)
Q Consensus 270 ~ 270 (780)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 305
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=1.2e-13 Score=132.00 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=69.5
Q ss_pred ceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCCCCCCCCCccceeecCCCCCCChhHHHHHhcccCCeeEEE
Q 004002 229 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR 308 (780)
Q Consensus 229 kG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~ 308 (780)
+|+||..|...+.+..++..+... ..+....-..... ..........+|||+|||.++|+++|+++|++|| |+.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 367888888888888887765433 2332221111111 1112223456899999999999999999999999 66887
Q ss_pred e----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 309 E----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 309 ~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
+ .++++|||||+|.+.++|++|| .+|+..+.|+.|+|..+.+...
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 5 4677999999999999999999 7999999999999999887653
No 306
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.4e-13 Score=124.77 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCe-eEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I-~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
....+|||+|||.++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. ||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 355789999999999999999999999999 67765 467899999999999999999987 999999999999999
Q ss_pred CCCch
Q 004002 350 RPGGA 354 (780)
Q Consensus 350 ~~k~~ 354 (780)
.++..
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 86543
No 307
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=121.66 Aligned_cols=78 Identities=9% Similarity=0.215 Sum_probs=69.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
....++|||+|||+++|+++|+++|++||.+ .|+ .+++++|||||+|.+.++|++||+ +++..|.++.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3456899999999999999999999999955 665 368899999999999999999995 7999999999999988
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.5e-13 Score=124.44 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=69.5
Q ss_pred Cccceee--cCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc-----CCceEEEEe
Q 004002 276 NQGTLVV--FNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI-----AGKRIKLEP 348 (780)
Q Consensus 276 ~~~~L~V--~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i-----~Gr~L~V~~ 348 (780)
...+||| +||+.++++++|+++|++||.|..|.+. ..||||||+|.+.++|++|++.|||+++ .|+.|.|.+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4568999 7799999999999999999999999875 3589999999999999999999999988 689999999
Q ss_pred cCCCc
Q 004002 349 SRPGG 353 (780)
Q Consensus 349 a~~k~ 353 (780)
++...
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 87543
No 309
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=5.3e-13 Score=122.89 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=66.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce-----EEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-----IKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~-----L~V~~a~ 350 (780)
...+|||+|||.++++++|+++|++||+|+.|++... |||||+|.+.++|++||+.|||..|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3468999999999999999999999999999998544 99999999999999999999999999998 7777766
Q ss_pred CC
Q 004002 351 PG 352 (780)
Q Consensus 351 ~k 352 (780)
++
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 54
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.7e-13 Score=117.31 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=67.6
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++++++|+++|++||.|..|........||||+|.+.++|++||+ |||..+.|+.|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 456899999999999999999999999999985432222299999999999999999 99999999999999887654
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=6.5e-13 Score=116.88 Aligned_cols=75 Identities=23% Similarity=0.474 Sum_probs=63.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcc--ccccccccccCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIPK 267 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~--l~gr~I~V~~a~pk 267 (780)
.+..+|||+|||+++|+++|+++|++||+|.+|+...++||||||+|.+.++|++ +++.. +.|++|.|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 4678999999999999999999999999999999766799999999999999984 45554 45899999999876
Q ss_pred C
Q 004002 268 D 268 (780)
Q Consensus 268 ~ 268 (780)
.
T Consensus 85 ~ 85 (89)
T 3d2w_A 85 H 85 (89)
T ss_dssp -
T ss_pred C
Confidence 5
No 312
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=8e-13 Score=117.31 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=65.8
Q ss_pred ccceeecCCCCCCChhH----HHHHhccc-CCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNED----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteed----L~~~Fs~y-G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
.+.|||+|||.++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|||..+.||+|+|.+|+.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 34499999999999988 55899999 599998 33 9999999999999999999999999999999999998
Q ss_pred Cch
Q 004002 352 GGA 354 (780)
Q Consensus 352 k~~ 354 (780)
+..
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 753
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=3.5e-14 Score=130.49 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s--------v~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
..+.++|||+|||.++++++|+++|++||.|.. |+ .+++++|||||+|.+.++|++|++.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999987 54 35788999999999999999999999999999
Q ss_pred ccccccccCCCCCCC
Q 004002 256 RRKLDIHFSIPKDNP 270 (780)
Q Consensus 256 gr~I~V~~a~pk~~~ 270 (780)
|++|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 314
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=3.8e-13 Score=124.49 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=69.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCC---eeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~---I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
...+|||+|||.++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ |||..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4578999999999999999999999999 777765 46778999999999999999999 999999999999999
Q ss_pred cCCC
Q 004002 349 SRPG 352 (780)
Q Consensus 349 a~~k 352 (780)
+.++
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 315
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.9e-13 Score=120.74 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=68.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
...+|||+|||.++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|..+.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 45789999999999999999999999954 7765 56788999999999999999995 899999999999998876
Q ss_pred Cc
Q 004002 352 GG 353 (780)
Q Consensus 352 k~ 353 (780)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 316
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.3e-13 Score=126.70 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEE-E----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v-~----~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...+|||+|||.++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |||..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 2 367789999999999999999999 99999999999999997
Q ss_pred CCc
Q 004002 351 PGG 353 (780)
Q Consensus 351 ~k~ 353 (780)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 317
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.3e-13 Score=128.47 Aligned_cols=76 Identities=9% Similarity=0.198 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE---EE--eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRT---LY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~s---v~--~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
...++|||+|||+++|+++|+++|++||.|.. +. .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999754 22 468899999999999999999999 9999999999999988
Q ss_pred CC
Q 004002 265 IP 266 (780)
Q Consensus 265 ~p 266 (780)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 318
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=1.7e-13 Score=122.74 Aligned_cols=78 Identities=22% Similarity=0.483 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
...++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++ ++..+.|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45689999999999999999999999999999873 57799999999999999999999 8999999999999987
Q ss_pred CCCC
Q 004002 266 PKDN 269 (780)
Q Consensus 266 pk~~ 269 (780)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 319
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.37 E-value=1.9e-13 Score=115.19 Aligned_cols=70 Identities=19% Similarity=0.477 Sum_probs=64.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
+|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++. ++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6899999999999999999999999998872 478899999999999999999994 899999999999864
No 320
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.3e-12 Score=122.52 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=67.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceE-EEEEEecHHHHHHHHHHccCccccc--cccccccCCCCCC
Q 004002 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 269 (780)
Q Consensus 194 tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~-aFV~F~~~e~A~~Al~~Lng~~l~g--r~I~V~~a~pk~~ 269 (780)
.|||+||++.+|+++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|+++|+|..|.| ++|+|.|++++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 4689999999999999999999999999985434 496 9999999999999999999999987 6899999988754
No 321
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-13 Score=126.32 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCE-EEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDI-RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I-~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..+.++|||+|||+++|+++|+++|++||.| ..|+ .+++++|||||+|.+.++|++||+. ++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 5555 2578999999999999999999997 99999999999999
Q ss_pred CCCC
Q 004002 264 SIPK 267 (780)
Q Consensus 264 a~pk 267 (780)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.37 E-value=7.8e-13 Score=125.92 Aligned_cols=80 Identities=28% Similarity=0.380 Sum_probs=71.8
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeE--------E--EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~--------v--~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
...+|||+|||.++|+++|+++|++||.|.. + ..++.++|||||+|.+.++|.+||..|||..+.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4578999999999999999999999999865 3 24688899999999999999999999999999999999
Q ss_pred EEecCCCchh
Q 004002 346 LEPSRPGGAR 355 (780)
Q Consensus 346 V~~a~~k~~r 355 (780)
|.++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876543
No 323
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=4.5e-13 Score=138.40 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=72.1
Q ss_pred CccceeecCCCCCCChhHHHHHhcccC--CeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG--~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~ 348 (780)
...+|||+||+.++|+++|+++|++|| .|++|++ ++++||||||+|.+.++|++||+.|||+.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999975 677899999999999999999999999999999999999
Q ss_pred cCCCch
Q 004002 349 SRPGGA 354 (780)
Q Consensus 349 a~~k~~ 354 (780)
+++...
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 986543
No 324
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=121.75 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCC---eeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~---I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
....+|||+|||.++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ |||..+.|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 34578999999999999999999999988 888875 36678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 004002 348 PSRPGG 353 (780)
Q Consensus 348 ~a~~k~ 353 (780)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987644
No 325
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.36 E-value=3e-13 Score=114.00 Aligned_cols=70 Identities=23% Similarity=0.453 Sum_probs=64.7
Q ss_pred ceeecCCCCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 279 ~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999976 35678999999999999999998 4999999999999875
No 326
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.36 E-value=4.7e-13 Score=138.25 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEE-----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG--~I~sv~-----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
..++|||+|||+++|+++|+++|++|| +|.+|+ .++++||||||+|.+.++|++||+.|++..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999987 2788999999999999999999999999999999999999
Q ss_pred CCC
Q 004002 264 SIP 266 (780)
Q Consensus 264 a~p 266 (780)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6e-14 Score=128.92 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=72.5
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~--------v~~-----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
...++|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999988 654 45678999999999999999999999999999
Q ss_pred ceEEEEecCCCch
Q 004002 342 KRIKLEPSRPGGA 354 (780)
Q Consensus 342 r~L~V~~a~~k~~ 354 (780)
++|+|.+++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987654
No 328
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=120.44 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=67.1
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
..+|||+|||.++|+++|+++|++| .|..|++ .++++|||||+|.+.++|++|| .|||..+.|+.|+|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 8988876 4678999999999999999999 6999999999999988854
No 329
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=5.5e-13 Score=123.40 Aligned_cols=76 Identities=7% Similarity=0.124 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~---I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...++|||+|||+++|+++|+++|++||. |..|+ ..++++|||||+|.+.++|++||+ |++..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35689999999999999999999999998 66655 248899999999999999999999 99999999999998
Q ss_pred cCCC
Q 004002 263 FSIP 266 (780)
Q Consensus 263 ~a~p 266 (780)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 330
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.35 E-value=4.8e-13 Score=121.38 Aligned_cols=76 Identities=9% Similarity=0.054 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~---I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...++|||+|||+++|+++|+++|+.||. |..|+ ..++++|||||+|.+.++|++||+ +++..|.|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45689999999999999999999999988 77776 247899999999999999999999 99999999999999
Q ss_pred cCCC
Q 004002 263 FSIP 266 (780)
Q Consensus 263 ~a~p 266 (780)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8765
No 331
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.4e-13 Score=116.91 Aligned_cols=79 Identities=24% Similarity=0.452 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
.++++|||+|||+++|+++|+++|++||+|..|+....++|||||+|.+.++|++|+.. ...+.+++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35699999999999999999999999999999997667899999999999999865432 3455899999999987654
Q ss_pred C
Q 004002 270 P 270 (780)
Q Consensus 270 ~ 270 (780)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.4e-12 Score=120.07 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
...++|||+|||+++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.|++..|.|++|+|.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 34689999999999999999999999999999986433 9999999999999999999999999999944443
No 333
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=4.4e-13 Score=127.69 Aligned_cols=76 Identities=7% Similarity=0.102 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~---I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
...++|||+|||+++|+++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ |++..|.|++|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45689999999999999999999999998 65554 248899999999999999999999 99999999999999
Q ss_pred cCCC
Q 004002 263 FSIP 266 (780)
Q Consensus 263 ~a~p 266 (780)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 334
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=2.1e-12 Score=129.89 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHc--cCccccccccccccCCCCCCCCC-----CCCCccceeecCCCCCCChhHHHHHhcccCCeeEEEe-
Q 004002 238 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSD-----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 309 (780)
Q Consensus 238 ~~e~A~~Al~~L--ng~~l~gr~I~V~~a~pk~~~s~-----~~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~- 309 (780)
+.+.+..|++.. ....+.+....|........+.. +....++|||+|||.++|+++|+++|++||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567788888876 44455565556655422222211 2234579999999999999999999999999999976
Q ss_pred ---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 004002 310 ---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (780)
Q Consensus 310 ---~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~ 353 (780)
++.++|||||+|.+.++|++|+..++ ..+.|+.|.|.+++.-.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 36678999999999999999998665 59999999999887643
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=1.3e-12 Score=113.21 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=66.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~y----G-------~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~ 258 (780)
.+.++|||+|||+++++++|+++|++| | +|.+++. .+.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 356899999999999999999999999 8 9999875 456999999999999999999 99999999999
Q ss_pred ccccc
Q 004002 259 LDIHF 263 (780)
Q Consensus 259 I~V~~ 263 (780)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99864
No 336
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=1.7e-12 Score=120.85 Aligned_cols=76 Identities=20% Similarity=0.395 Sum_probs=70.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
..++|||+|| ++++++|+++|++||.|..|++. .++|||||+|.+.++|++||+.|||..+.|+.|+|.+++++..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 4579999996 69999999999999999999984 7789999999999999999999999999999999999998754
No 337
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.4e-12 Score=133.68 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=77.5
Q ss_pred CccccccccccccCCCCCCCCCCCCCccceeecCCCCCC---------ChhHHHHHhcccCCeeEEEeCCCcccEEEEEE
Q 004002 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV---------SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEF 321 (780)
Q Consensus 251 g~~l~gr~I~V~~a~pk~~~s~~~~~~~~L~V~NLp~~v---------teedL~~~Fs~yG~I~~v~~~g~srG~aFV~F 321 (780)
...+.|+.....+..............++|||+||+..+ ++++|+++|++||+|++|++. .++|||||+|
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F 186 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKF 186 (240)
T ss_dssp SBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEE
T ss_pred CcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEe
Confidence 344456654444433222112223456799999999998 799999999999999999985 4689999999
Q ss_pred cCHHHHHHHHHHhCCCcc------------CCceEEEEecCCCchh
Q 004002 322 YDVRAAEAALKSLNRSDI------------AGKRIKLEPSRPGGAR 355 (780)
Q Consensus 322 ~~~e~A~~Ai~~LnG~~i------------~Gr~L~V~~a~~k~~r 355 (780)
.+.++|++|+++|+|..+ .|+.|.|.||+.....
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 999999999999999999 8999999999876543
No 338
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=7.4e-13 Score=115.48 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=66.4
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCCc
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPGG 353 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~--~i~Gr~L~V~~a~~k~ 353 (780)
..++|||+|||.++++++|+++|++||.|+.|++...++|||||+|.+.++|++| ++. .+.|++|+|.+++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 3578999999999999999999999999999998777899999999999999764 444 5589999999998875
Q ss_pred h
Q 004002 354 A 354 (780)
Q Consensus 354 ~ 354 (780)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 339
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.33 E-value=1.5e-12 Score=129.20 Aligned_cols=78 Identities=22% Similarity=0.431 Sum_probs=72.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999874 47789999999999999999999999999999999999987
Q ss_pred CC
Q 004002 266 PK 267 (780)
Q Consensus 266 pk 267 (780)
+.
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=2.2e-12 Score=111.65 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=65.8
Q ss_pred CccceeecCCCCCCChhHHHHHhccc----C-------CeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~y----G-------~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L 344 (780)
..++|||+|||.++++++|+++|++| | .|..+++. ..+|||||+|.+.++|++|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45789999999999999999999999 8 89999885 45899999999999999999 999999999999
Q ss_pred EEEe
Q 004002 345 KLEP 348 (780)
Q Consensus 345 ~V~~ 348 (780)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9973
No 341
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=7.6e-13 Score=126.50 Aligned_cols=78 Identities=9% Similarity=0.203 Sum_probs=68.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 189 e~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
....++|||+|||+++|+++|+++|++|| |..|+ ..++++|||||+|.+.++|++|| .+++..|.++.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 55776 24789999999999999999999 68999999999999988
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.+++
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 342
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=7.9e-13 Score=118.37 Aligned_cols=78 Identities=24% Similarity=0.466 Sum_probs=70.4
Q ss_pred CCccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 004002 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 350 (780)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +|..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34579999999999999999999999999999976 45678999999999999999999 9999999999999998
Q ss_pred CCch
Q 004002 351 PGGA 354 (780)
Q Consensus 351 ~k~~ 354 (780)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7653
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=3.3e-12 Score=126.76 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=72.3
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
...+|||+|||..+++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++||+.|||..+.|+.|+|+++.+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4579999999999999999999999999999987 356789999999999999999999999999999999999987
Q ss_pred Cc
Q 004002 352 GG 353 (780)
Q Consensus 352 k~ 353 (780)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=2.3e-12 Score=119.99 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCCCCC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~pk~~ 269 (780)
.+.++|||+|| ++|+++|+++|++||+|..|+. .+++|||||+|.+.++|++|++.|+|..|.|++|.|.|+.++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 46799999996 7999999999999999999875 47899999999999999999999999999999999999987643
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=9.5e-13 Score=120.62 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
..++|||+|||+++|+++|+++|++| .|..|++ .++++|||||+|.+.++|++|| .+++..|.||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34799999999999999999999999 8888773 4789999999999999999999 5999999999999987643
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.30 E-value=2.3e-12 Score=121.09 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=66.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEE--EEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIR--TLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~--sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~ 263 (780)
...++|||+|||+++|+++|+++|++| .|. .|+ ..++++|||||+|.+.++|++||+. ++..|.||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 456899999999999999999999999 666 776 2488999999999999999999995 78999999999988
Q ss_pred CCC
Q 004002 264 SIP 266 (780)
Q Consensus 264 a~p 266 (780)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 347
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=122.42 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=67.7
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCe----eEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I----~~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
...+|||+|||.++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..+.|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 34689999999999999999999999975 45553 577899999999999999999996 9999999999999
Q ss_pred ecCCCc
Q 004002 348 PSRPGG 353 (780)
Q Consensus 348 ~a~~k~ 353 (780)
.+.++.
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.4e-12 Score=116.36 Aligned_cols=71 Identities=14% Similarity=0.296 Sum_probs=60.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----C---CCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----t---gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
...++|||+|||+++|+++|+++|++||+|. ++. + ++++|||||+|.+.++|++|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3568999999999999999999999999998 551 2 68899999999999999999999832 55555555
Q ss_pred cc
Q 004002 262 HF 263 (780)
Q Consensus 262 ~~ 263 (780)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 349
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=122.16 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCE----EEEE----eCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I----~sv~----~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
...++|||+|||+++|+++|+++|++||.| ..|+ .+++++|||||+|.+.++|++||+. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356899999999999999999999999975 3343 4688999999999999999999996 999999999999
Q ss_pred ccCCC
Q 004002 262 HFSIP 266 (780)
Q Consensus 262 ~~a~p 266 (780)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=4.1e-12 Score=131.88 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccc-----
Q 004002 189 EHPSRTLFVRNINSNV---------EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 254 (780)
Q Consensus 189 e~~s~tLfVgNLp~~v---------teeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l----- 254 (780)
....++|||+||+.++ ++++|+.+|++||+|.+|++ ..+||||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 3467999999999998 79999999999999999985 35799999999999999999999999999
Q ss_pred -------cccccccccCCCCCCCC
Q 004002 255 -------RRRKLDIHFSIPKDNPS 271 (780)
Q Consensus 255 -------~gr~I~V~~a~pk~~~s 271 (780)
.|+.|.|.|+.+..++.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TTGGGGGGSCCCEEEECC------
T ss_pred ccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998765543
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.26 E-value=3.9e-12 Score=119.60 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=66.5
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCee--EEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--EIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~--~v~~----~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
...+|||+|||+++|+++|+++|++| .|+ .|++ .++++|||||+|.+.++|++||+ +++..|.|+.|+|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 45789999999999999999999999 666 7765 46789999999999999999998 4789999999999988
Q ss_pred CCC
Q 004002 350 RPG 352 (780)
Q Consensus 350 ~~k 352 (780)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=113.05 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=65.0
Q ss_pred CccceeecCCCCCCChhHHHHHhcccCCeeEEEe-----C---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----T---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~-----~---g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
..++|||+|||.++++++|+++|++||.|. +++ + ++++|||||+|.+.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 654 2 5779999999999999999999995 4788888887
Q ss_pred ecCCCch
Q 004002 348 PSRPGGA 354 (780)
Q Consensus 348 ~a~~k~~ 354 (780)
.+.+...
T Consensus 84 ~~~~~~~ 90 (114)
T 2dnl_A 84 SSPTIKD 90 (114)
T ss_dssp CCSSSCS
T ss_pred cCCCcCC
Confidence 6665443
No 353
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.24 E-value=7.1e-12 Score=117.39 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=68.8
Q ss_pred cceeecCC----CCCCChhHHHHHhcccCCeeEEEe-----CCCcccEEEEEEcC----HHH----HHHHHH--HhCCCc
Q 004002 278 GTLVVFNL----DPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALK--SLNRSD 338 (780)
Q Consensus 278 ~~L~V~NL----p~~vteedL~~~Fs~yG~I~~v~~-----~g~srG~aFV~F~~----~e~----A~~Ai~--~LnG~~ 338 (780)
.+|||+|| |+.+++++|+++|+.||+|.+|++ ++.++|||||+|.+ .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999974 78899999999996 333 899999 899999
Q ss_pred cCCceEEEEecCCCch
Q 004002 339 IAGKRIKLEPSRPGGA 354 (780)
Q Consensus 339 i~Gr~L~V~~a~~k~~ 354 (780)
|+|++|+|.+.+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999988765
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=1.9e-11 Score=111.10 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=66.6
Q ss_pred CccceeecCCCC-----CCChhHHHHHhcccCCeeEEEeC------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 004002 276 NQGTLVVFNLDP-----SVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (780)
Q Consensus 276 ~~~~L~V~NLp~-----~vteedL~~~Fs~yG~I~~v~~~------g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L 344 (780)
..++|+|.||-. +-++++|+++|++||.|++|++. ++++|+|||+|.+.++|++|++.|||+.+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456899999953 23689999999999999999762 4678999999999999999999999999999999
Q ss_pred EEEecCC
Q 004002 345 KLEPSRP 351 (780)
Q Consensus 345 ~V~~a~~ 351 (780)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999975
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.6e-11 Score=110.87 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=69.1
Q ss_pred CCccceeecCCCCCCC-----------hhHHHHHhcccCCeeEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 004002 275 LNQGTLVVFNLDPSVS-----------NEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (780)
Q Consensus 275 ~~~~~L~V~NLp~~vt-----------eedL~~~Fs~yG~I~~v~~-~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr 342 (780)
...++|+|.||-...+ +++|+++|++||.|+.|.+ ...++|||||+|.+.++|++|++.|||..+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3567999999944332 5899999999999999976 345789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 004002 343 RIKLEPSRPGG 353 (780)
Q Consensus 343 ~L~V~~a~~k~ 353 (780)
+|+|.++.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998764
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.23 E-value=1.3e-11 Score=139.13 Aligned_cols=79 Identities=28% Similarity=0.478 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~-----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
.+.++|||+|||++||+++|+.+|++||.|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|++|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999873 6788999999999999999999999999999999999999
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8654
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.8e-11 Score=110.66 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeCCCCCCC-----------HHHHHHHhhcCCCEEEEEe-CCCcceEEEEEEecHHHHHHHHHHccCcccc
Q 004002 188 GEHPSRTLFVRNINSNVE-----------DSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (780)
Q Consensus 188 ~e~~s~tLfVgNLp~~vt-----------eeeLr~lF~~yG~I~sv~~-tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~ 255 (780)
...++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|+|..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445789999999954433 6899999999999999874 4458999999999999999999999999999
Q ss_pred ccccccccCCCCCC
Q 004002 256 RRKLDIHFSIPKDN 269 (780)
Q Consensus 256 gr~I~V~~a~pk~~ 269 (780)
|++|.|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987653
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=3.2e-11 Score=109.61 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=67.7
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhhcCCCEEEEEe------CCCcceEEEEEEecHHHHHHHHHHccCccccccc
Q 004002 190 HPSRTLFVRNINS-----NVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (780)
Q Consensus 190 ~~s~tLfVgNLp~-----~vteeeLr~lF~~yG~I~sv~~------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~ 258 (780)
.++++|+|+|+.. +-++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4679999999963 2378999999999999999873 2578999999999999999999999999999999
Q ss_pred cccccCCC
Q 004002 259 LDIHFSIP 266 (780)
Q Consensus 259 I~V~~a~p 266 (780)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.4e-11 Score=115.36 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=65.0
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhcCCCEEEEE-----eCCCcceEEEEEEec----HHH----HHHHHH--HccCcc
Q 004002 193 RTLFVRNI----NSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 253 (780)
Q Consensus 193 ~tLfVgNL----p~~vteeeLr~lF~~yG~I~sv~-----~tgkskG~aFV~F~~----~e~----A~~Al~--~Lng~~ 253 (780)
++|||+|| |+.+++++|+.+|++||+|.+|. .+++++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999987 589999999999996 433 889988 789999
Q ss_pred ccccccccccCC
Q 004002 254 LRRRKLDIHFSI 265 (780)
Q Consensus 254 l~gr~I~V~~a~ 265 (780)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998754
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.15 E-value=4.5e-11 Score=120.14 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~p 266 (780)
..++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.+ +..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999873 4789999999999999999999865 5689999999998654
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1.2e-10 Score=105.81 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=65.8
Q ss_pred CccceeecCC--CCCCC--------hhHHHHHhcccCCeeEEEeC-------CCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 004002 276 NQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRET-------PHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (780)
Q Consensus 276 ~~~~L~V~NL--p~~vt--------eedL~~~Fs~yG~I~~v~~~-------g~srG~aFV~F~~~e~A~~Ai~~LnG~~ 338 (780)
+.+.|.+.|+ +.++. +++|++.|++||.|++|++. +.++|+|||+|.+.++|++|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899998 44443 37899999999999999873 2468999999999999999999999999
Q ss_pred cCCceEEEEecCCC
Q 004002 339 IAGKRIKLEPSRPG 352 (780)
Q Consensus 339 i~Gr~L~V~~a~~k 352 (780)
++||+|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=105.54 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=60.5
Q ss_pred CCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCch
Q 004002 286 DPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (780)
Q Consensus 286 p~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k~~ 354 (780)
+..+++++|+++|++||.|+.|++.++++|||||+|.+.++|++||+.+++ +.|+.|+|.+++++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 357899999999999999999999888999999999999999999998554 6799999999987653
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.9e-10 Score=101.68 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=64.3
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccC
Q 004002 192 SRTLFVRNIN-------SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (780)
Q Consensus 192 s~tLfVgNLp-------~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a 264 (780)
..+|.|.-.. .++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566666544 46899999999999999999997789999999999999999999998554 67999999999
Q ss_pred CCCC
Q 004002 265 IPKD 268 (780)
Q Consensus 265 ~pk~ 268 (780)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8664
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=4.7e-11 Score=108.26 Aligned_cols=68 Identities=28% Similarity=0.401 Sum_probs=58.5
Q ss_pred ecCCCCCCChhHHHHHh------------cccCCeeEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 282 VFNLDPSVSNEDLRQIF------------GAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 282 V~NLp~~vteedL~~~F------------s~yG~I~~v~~~----g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
+.||+..+++++|+++| ++||.|++|++. ++++|||||+|.+.++|++|++.|||+.+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45667777777776666 999999999873 45689999999999999999999999999999999
Q ss_pred EEec
Q 004002 346 LEPS 349 (780)
Q Consensus 346 V~~a 349 (780)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.05 E-value=2.5e-10 Score=103.69 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=66.7
Q ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHhhcCCCEEEEEeC-------CCcceEEEEEEecHHHHHHHHHHccCc
Q 004002 190 HPSRTLFVRNI--NSNVE--------DSELRALFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQNK 252 (780)
Q Consensus 190 ~~s~tLfVgNL--p~~vt--------eeeLr~lF~~yG~I~sv~~t-------gkskG~aFV~F~~~e~A~~Al~~Lng~ 252 (780)
.+++.|.++|+ |.++. +++|++.|++||+|.+|++. ++++|+|||+|.+.++|++|+++|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999998 44443 36899999999999999831 357899999999999999999999999
Q ss_pred cccccccccccCCC
Q 004002 253 PLRRRKLDIHFSIP 266 (780)
Q Consensus 253 ~l~gr~I~V~~a~p 266 (780)
.+.||+|.|.|+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=2.9e-10 Score=123.87 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=65.3
Q ss_pred CccceeecC--CCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccC---Cc--eEEEEe
Q 004002 276 NQGTLVVFN--LDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA---GK--RIKLEP 348 (780)
Q Consensus 276 ~~~~L~V~N--Lp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~---Gr--~L~V~~ 348 (780)
...+|||+| |+..+|+++|+++|++||+|++|++.. +||||||+|.+.++|++||++|||+++. |+ .|.|.+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 457999999 578999999999999999999998854 7899999999999999999999999883 44 578888
Q ss_pred cC
Q 004002 349 SR 350 (780)
Q Consensus 349 a~ 350 (780)
+.
T Consensus 96 ~~ 97 (345)
T 3tht_A 96 VE 97 (345)
T ss_dssp CS
T ss_pred ee
Confidence 75
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.02 E-value=7.9e-11 Score=106.76 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=60.1
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCCEEEEEe----CCCcceEEEEEEecHHHHHHHHHHccCccccccccc
Q 004002 197 VRNINSNVEDSELRALF------------EQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (780)
Q Consensus 197 VgNLp~~vteeeLr~lF------------~~yG~I~sv~~----tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~ 260 (780)
+.+|++++++++|++.| ++||+|.+|++ .++++|||||+|.+.++|++|++.|+|+.+.||+|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888877766 99999999984 356899999999999999999999999999999999
Q ss_pred cccC
Q 004002 261 IHFS 264 (780)
Q Consensus 261 V~~a 264 (780)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=3.6e-10 Score=123.21 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=65.2
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccc---cc--cccc
Q 004002 189 EHPSRTLFVRN--INSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLDI 261 (780)
Q Consensus 189 e~~s~tLfVgN--Lp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~---gr--~I~V 261 (780)
..++++|||+| |+..+||++|+++|++||+|.+|+. ..+||||||+|.+.++|++|+++|||+.+. |+ .|.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 45789999999 5789999999999999999999875 347899999999999999999999999873 34 5666
Q ss_pred ccC
Q 004002 262 HFS 264 (780)
Q Consensus 262 ~~a 264 (780)
.|+
T Consensus 94 ~~~ 96 (345)
T 3tht_A 94 NFV 96 (345)
T ss_dssp EEC
T ss_pred EEe
Confidence 665
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=1.2e-09 Score=100.89 Aligned_cols=76 Identities=18% Similarity=0.140 Sum_probs=64.0
Q ss_pred CccceeecCCCC--CC--------ChhHHHHHhcccCCeeEEEeCC-CcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 004002 276 NQGTLVVFNLDP--SV--------SNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (780)
Q Consensus 276 ~~~~L~V~NLp~--~v--------teedL~~~Fs~yG~I~~v~~~g-~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L 344 (780)
..++|.+.|+=. +. -++||++.|++||.|++|.+.. ..+|++||+|.+.++|++|++.|||+.++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 456788888722 21 2468999999999999998743 348999999999999999999999999999999
Q ss_pred EEEecCC
Q 004002 345 KLEPSRP 351 (780)
Q Consensus 345 ~V~~a~~ 351 (780)
+|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999864
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.95 E-value=1e-09 Score=101.84 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=64.2
Q ss_pred CccceeecCCC--CCC---ChhHHHHHhcccCCeeEEEeC---------CCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 004002 276 NQGTLVVFNLD--PSV---SNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (780)
Q Consensus 276 ~~~~L~V~NLp--~~v---teedL~~~Fs~yG~I~~v~~~---------g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G 341 (780)
..++|+|.|+- .++ -++||++.|++||.|++|++. ++++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 35688999983 222 368999999999999998752 2356999999999999999999999999999
Q ss_pred ceEEEEecCC
Q 004002 342 KRIKLEPSRP 351 (780)
Q Consensus 342 r~L~V~~a~~ 351 (780)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.94 E-value=1.4e-09 Score=100.95 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=65.2
Q ss_pred CCcEEEEeCCC--CCC---CHHHHHHHhhcCCCEEEEEe---------CCCcceEEEEEEecHHHHHHHHHHccCccccc
Q 004002 191 PSRTLFVRNIN--SNV---EDSELRALFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (780)
Q Consensus 191 ~s~tLfVgNLp--~~v---teeeLr~lF~~yG~I~sv~~---------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g 256 (780)
++++|+++|+- .++ .+++|++.|++||+|.+|++ +++++|+|||+|.+.++|++|+++|+|+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67999999983 222 36899999999999999872 24578999999999999999999999999999
Q ss_pred cccccccCC
Q 004002 257 RKLDIHFSI 265 (780)
Q Consensus 257 r~I~V~~a~ 265 (780)
|.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.79 E-value=7.8e-09 Score=95.33 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCcEEEEeCCCCCCC----------HHHHHHHhhcCCCEEEEEeC-CCcceEEEEEEecHHHHHHHHHHccCccccccc
Q 004002 190 HPSRTLFVRNINSNVE----------DSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (780)
Q Consensus 190 ~~s~tLfVgNLp~~vt----------eeeLr~lF~~yG~I~sv~~t-gkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~ 258 (780)
.+++.|.++|+=..-+ +++|++.|++||.|.+|++. ...+|+|||+|.+.++|++|++.|||..+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678899999733221 35889999999999999853 335899999999999999999999999999999
Q ss_pred cccccCC
Q 004002 259 LDIHFSI 265 (780)
Q Consensus 259 I~V~~a~ 265 (780)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=2.3e-08 Score=87.94 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=62.1
Q ss_pred CccceeecCCC----CCCCh----hHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 004002 276 NQGTLVVFNLD----PSVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (780)
Q Consensus 276 ~~~~L~V~NLp----~~vte----edL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~ 347 (780)
...||+|.-.+ ..+-+ .+|.+.|++||+|..+|+.. +.+||+|.+.++|.+||+ |||.++.||.|+|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 45688888776 23434 67999999999999999864 339999999999999998 99999999999999
Q ss_pred ecCCC
Q 004002 348 PSRPG 352 (780)
Q Consensus 348 ~a~~k 352 (780)
++.+.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 99875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=1.2e-07 Score=88.28 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=71.2
Q ss_pred CccceeecCCCCC-CChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcC-HHHHHHHHHHhC--CCccCCceEEEEecCC
Q 004002 276 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALKSLN--RSDIAGKRIKLEPSRP 351 (780)
Q Consensus 276 ~~~~L~V~NLp~~-vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~-~e~A~~Ai~~Ln--G~~i~Gr~L~V~~a~~ 351 (780)
....|+|+||+.+ +++++|+++|++||.|..|.+... ...|||+|.+ .++|++|+++|| |..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4568999999999 999999999999999999998543 3479999999 899999999995 7799999999987764
Q ss_pred CchhhhHhhhhc
Q 004002 352 GGARRNLMLQLN 363 (780)
Q Consensus 352 k~~r~~~l~ql~ 363 (780)
.. -+.+++...
T Consensus 96 ee-E~~yw~Ki~ 106 (121)
T 1owx_A 96 EV-EKEALKKII 106 (121)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 33 344555543
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.4e-07 Score=83.41 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=61.6
Q ss_pred CCccceeecCCCCC-----CCh----hHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 004002 275 LNQGTLVVFNLDPS-----VSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (780)
Q Consensus 275 ~~~~~L~V~NLp~~-----vte----edL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~ 345 (780)
....||+|.-++.+ +-+ .+|.+.|+.||+|..+|+.... +||+|.+.++|.+||+ |||.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 35679999988743 323 5689999999999999986433 9999999999999998 999999999999
Q ss_pred EEecCC
Q 004002 346 LEPSRP 351 (780)
Q Consensus 346 V~~a~~ 351 (780)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998765
No 376
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.42 E-value=5e-07 Score=79.80 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=56.7
Q ss_pred eeEEEecCCCCCCHHHHHHHHhhcCCCcceeEEe-eccccCC-cceeeEEeccCCccchHHHHHHhcCce
Q 004002 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYL-PIDFKNK-CNVGYAFINMLSPLHIIPFYEVLFSCA 762 (780)
Q Consensus 695 tt~mirniPn~~~~~~l~~~i~~~~~~~ydf~yl-p~d~~~~-~n~gyafin~~~~~~~~~f~~~f~~~~ 762 (780)
|.|+||++|..+|++.++++|.... ++||+|. |=+...+ +--+-|||||.+++++..|.+.|+|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 7899999999999999999999764 6888875 6665544 334679999999999999999999996
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.37 E-value=5.1e-07 Score=91.81 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=56.8
Q ss_pred CChhHHHHHhcccCCeeEEEe---------CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 289 VSNEDLRQIFGAYGEVKEIRE---------TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 289 vteedL~~~Fs~yG~I~~v~~---------~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
-.+++|++.|++||.|.++++ +++++|++||+|.+.++|++|++.|||+.++||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999976 226789999999999999999999999999999999999863
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=1.2e-06 Score=81.51 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=60.7
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEec-HHHHHHHHHHcc--Ccccccccccccc
Q 004002 191 PSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHF 263 (780)
Q Consensus 191 ~s~tLfVgNLp~~-vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~-~e~A~~Al~~Ln--g~~l~gr~I~V~~ 263 (780)
+.+.|+|+||+.+ +++++|+++|++||+|..|... +..-.|||.|.+ .++|++|+++|+ +..|.+..+.++.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 5689999999999 9999999999999999999832 223369999999 899999999994 6778887666653
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=6.2e-07 Score=78.89 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=60.8
Q ss_pred CCcEEEEeCCC----CCCCH----HHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 191 PSRTLFVRNIN----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 191 ~s~tLfVgNLp----~~vte----eeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
+..||+|.-.+ .++-+ .+|.+.|.+||+|..++... +.+||+|.+.++|.+|++ |+|..+.||.|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 56788888776 23434 67899999999999998533 238999999999999999 99999999999999
Q ss_pred cCCCC
Q 004002 263 FSIPK 267 (780)
Q Consensus 263 ~a~pk 267 (780)
++.|.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 88753
No 380
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.32 E-value=2.1e-07 Score=82.76 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=59.8
Q ss_pred eeEEEecCCCCCCHHHHHHHHhhcCCCcceeEE-eeccccCCcce-eeEEeccCCccchHHHHHHhcCceeEEEEeeCCC
Q 004002 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLY-LPIDFKNKCNV-GYAFINMLSPLHIIPFYEVLFSCAIGILFFNNNN 772 (780)
Q Consensus 695 tt~mirniPn~~~~~~l~~~i~~~~~~~ydf~y-lp~d~~~~~n~-gyafin~~~~~~~~~f~~~f~~~~~~~~~~~~~~ 772 (780)
-.|+||++|+.+|++.+++.|+.... .||+| .|=|...+-++ ..|||||+++++|..|.+.|+|+. |-|+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~-----F~D~k 82 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI-----FLDSK 82 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE-----EECTT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE-----EEeCC
Confidence 57999999999999999999997654 46665 56666554333 569999999999999999999997 66665
Q ss_pred ceee
Q 004002 773 NYYY 776 (780)
Q Consensus 773 ~~~~ 776 (780)
+..|
T Consensus 83 g~~~ 86 (97)
T 2l08_A 83 GLEY 86 (97)
T ss_dssp CCEE
T ss_pred CCEe
Confidence 5444
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.19 E-value=1.8e-06 Score=87.72 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCHHHHHHHhhcCCCEEEEEe---------CCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 204 VEDSELRALFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 204 vteeeLr~lF~~yG~I~sv~~---------tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
-.+++|++.|++||+|.++++ +++++|++||+|.+.++|++|++.|+|+.+.||.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999873 23789999999999999999999999999999999999874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=3.8e-06 Score=75.87 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=66.0
Q ss_pred CccceeecCCCCCCChhHHHHHhccc-----CCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 004002 276 NQGTLVVFNLDPSVSNEDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (780)
Q Consensus 276 ~~~~L~V~NLp~~vteedL~~~Fs~y-----G~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a 349 (780)
..++|-+-|||..+++..|+.+.++| |.|+.|.+.+... -|+|+|.|...|.+|.-+|+|.+|.|++|+|.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-EEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-ceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 35689999999999999999999999 9999998866654 4999999999999999999999999999999643
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=4.1e-06 Score=74.09 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=58.7
Q ss_pred CCcEEEEeCCCCC-----CCH----HHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCcccccccccc
Q 004002 191 PSRTLFVRNINSN-----VED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (780)
Q Consensus 191 ~s~tLfVgNLp~~-----vte----eeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V 261 (780)
+..||+|.-++.+ +-+ .+|.+.|.+||+|..++..... +||+|.+.++|.+||+ |+|..+.||.|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 6789999988743 322 5688999999999988842221 9999999999999999 9999999999999
Q ss_pred ccCC
Q 004002 262 HFSI 265 (780)
Q Consensus 262 ~~a~ 265 (780)
++..
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8643
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00011 Score=66.51 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC-----CCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~y-----G~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~ 262 (780)
..++|-+-|||.+|++..|+.+.+++ |+|..+.....+. =|+|+|.+...|-+|.-+|+|..|.|++|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 9999988545444 49999999999999999999999999999885
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.0005 Score=61.60 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-----CCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~-----yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
..++|.|.|||+++.++.|.-+|+. =|+|..+...+ +-|+|+|.+.+.|++.++. ....|.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 4589999999999999999999986 26888887544 7799999999999999983 4778889888886544
Q ss_pred CCCCCCCCCCCccceeecCCCCCCC
Q 004002 266 PKDNPSDKDLNQGTLVVFNLDPSVS 290 (780)
Q Consensus 266 pk~~~s~~~~~~~~L~V~NLp~~vt 290 (780)
+. ....|++.||++.++
T Consensus 83 ~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CC--------CCCCCCCCSCCCCCC
T ss_pred CC--------CcceEeeecCCCCCC
Confidence 43 245799999998875
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00057 Score=61.26 Aligned_cols=83 Identities=24% Similarity=0.317 Sum_probs=71.2
Q ss_pred ccceeecCCCCCCChhHHHHHhcc-----cCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGA-----YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~-----yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 351 (780)
..+|.|.|||.+++++.|+-.|+. =|+|..+...+ +-|+|+|.+.+.|++.|+. ..+.+.+..|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 468999999999999999999986 27899998766 6699999999999999973 36789999999999988
Q ss_pred CchhhhHhhhhc
Q 004002 352 GGARRNLMLQLN 363 (780)
Q Consensus 352 k~~r~~~l~ql~ 363 (780)
+..++.+++.+.
T Consensus 84 ~~~~r~ll~gl~ 95 (104)
T 2dhx_A 84 RAPARLLLQGLP 95 (104)
T ss_dssp CCCCCCCCCSCC
T ss_pred CCcceEeeecCC
Confidence 888887776654
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.00056 Score=61.48 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=62.1
Q ss_pred cceeecCCCCCC-Ch----hHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 004002 278 GTLVVFNLDPSV-SN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (780)
Q Consensus 278 ~~L~V~NLp~~v-te----edL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~k 352 (780)
.+|+|.||+.++ +. +.++++|..|+++.....-+.-| -..|.|.+.++|.+|...|++..+.|++|+|-++++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 579999998876 32 56789999999988865433322 3799999999999999999999999999999999854
Q ss_pred c
Q 004002 353 G 353 (780)
Q Consensus 353 ~ 353 (780)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.51 E-value=0.0033 Score=56.53 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCCC-C----HHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccccccccccCC
Q 004002 191 PSRTLFVRNINSNV-E----DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (780)
Q Consensus 191 ~s~tLfVgNLp~~v-t----eeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~gr~I~V~~a~ 265 (780)
-.++|+|.||+.+| + .++++++|..|+++.+...- ++-.=..|.|.+.++|.+|...|++..+.|++++|.|+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 34789999998876 3 25778999999998876532 232346899999999999999999999999999999988
Q ss_pred CCC
Q 004002 266 PKD 268 (780)
Q Consensus 266 pk~ 268 (780)
+..
T Consensus 83 ~~~ 85 (104)
T 1wey_A 83 TLH 85 (104)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.44 E-value=0.0073 Score=55.63 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCCccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCC-ceEEEEecCCC
Q 004002 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRPG 352 (780)
Q Consensus 274 ~~~~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~LnG~~i~G-r~L~V~~a~~k 352 (780)
.....-|.|.+.|... -..+.+.|++||+|.+... .....+-.|+|.++.+|++||. .||..+.| -.|-|.+...+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCH
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCH
Confidence 3456789999999885 5667788999999999887 3456899999999999999998 59999985 66777776544
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.67 E-value=0.027 Score=49.52 Aligned_cols=65 Identities=5% Similarity=0.051 Sum_probs=53.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eCCC------cceEEEEEEecHHHHHHHHHHccCcccccc
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-~tgk------skG~aFV~F~~~e~A~~Al~~Lng~~l~gr 257 (780)
++|.||+||+.+||+++.+.++.+.++.-.+ ..|+ .-.-|+|.|.+.+++..-.+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999988776544 2222 234699999999999999999999988643
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.62 E-value=0.021 Score=50.66 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=44.5
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~Ln 335 (780)
..++| ++|+.+...||.++|++||.|.--.++ ...|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999966444443 3469999999999999999763
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.94 E-value=0.018 Score=51.20 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=44.3
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~Ln 335 (780)
..++| ++|+.+...||.++|++||.|.--.+. ...|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 35666 999999999999999999955433343 3469999999999999999875
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.58 E-value=0.16 Score=46.70 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=56.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccCccccc-cccccccC
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHFS 264 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng~~l~g-r~I~V~~a 264 (780)
..+-|.|=+.|+.. ...+...|++||+|.+... .....+-.|.|.+..+|++||.+ ||..|.+ ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 35788898999885 6677889999999998875 33557899999999999999994 9999874 45555543
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.92 E-value=0.078 Score=49.53 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=56.3
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEE-EeC----------------C--CcccEEEEEEcCHHHHHHHHHHhCCC
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RET----------------P--HKRHHKFIEFYDVRAAEAALKSLNRS 337 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v-~~~----------------g--~srG~aFV~F~~~e~A~~Ai~~LnG~ 337 (780)
..-|.|.+.|.+.+ ..+.+.|++||.|.+- ... + ...++.-|+|++..+|.+||. -||+
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34688899987765 4566789999999772 111 1 135688999999999999998 5999
Q ss_pred ccCCceEEEEecCC
Q 004002 338 DIAGKRIKLEPSRP 351 (780)
Q Consensus 338 ~i~Gr~L~V~~a~~ 351 (780)
.|.|.-|=|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888888853
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.53 E-value=0.19 Score=44.59 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=43.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHcc
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 250 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Ln 250 (780)
.+.++| +.|+++...||..+|+.||.|.---+ .-..|||.|.+++.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 356777 99999999999999999996532112 12469999999999999999764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.14 E-value=0.16 Score=45.03 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=50.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eCCC------cceEEEEEEecHHHHHHHHHHccCcccccc
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-~tgk------skG~aFV~F~~~e~A~~Al~~Lng~~l~gr 257 (780)
.+-+|.||.||+.+||+++.+.++..=++...+ ..|+ .-.-|||.|.+.++...-.+..+|..+.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 457899999999999999888887665543222 1111 123589999999999999999999888543
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.57 E-value=0.17 Score=45.03 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=43.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eCCCcceEEEEEEecHHHHHHHHHHcc
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQ 250 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-~tgkskG~aFV~F~~~e~A~~Al~~Ln 250 (780)
+.++| +.|+++...||..+|+.||.|. |+ +. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999554 32 22 2469999999999999999764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.55 E-value=0.076 Score=59.77 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=43.4
Q ss_pred ccceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 004002 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (780)
Q Consensus 277 ~~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~ 333 (780)
.+.|+|. .+..+++.+|.+.|++||.|..+........|+.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689997 7999999999999999999999987766667999999999999977653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.14 E-value=0.11 Score=58.34 Aligned_cols=57 Identities=9% Similarity=0.271 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHH
Q 004002 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRA 248 (780)
Q Consensus 191 ~s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~ 248 (780)
..|.|+|. .|..+++.+|.++|++||+|.++.......-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 34899997 7999999999999999999999874444446999999999999977663
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.13 E-value=0.23 Score=46.42 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=52.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eC-------------C-----CcceEEEEEEecHHHHHHHHHHccCc
Q 004002 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TA-------------C-----KHRGFVMISYYDIRAARTAMRALQNK 252 (780)
Q Consensus 192 s~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~-~t-------------g-----kskG~aFV~F~~~e~A~~Al~~Lng~ 252 (780)
..-|.|=+.|++.+ ..+.+.|++||.|.+-. .. . ....+..|+|.+..+|++||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 45677777866655 45668899999997622 00 0 1356789999999999999995 999
Q ss_pred cccccccccccC
Q 004002 253 PLRRRKLDIHFS 264 (780)
Q Consensus 253 ~l~gr~I~V~~a 264 (780)
.|.|..|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999887777654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.96 E-value=8.1 Score=43.89 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=44.6
Q ss_pred cceeecCCCCCCChhHHHHHhcccCCeeEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 004002 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (780)
Q Consensus 278 ~~L~V~NLp~~vteedL~~~Fs~yG~I~~v~~~g~srG~aFV~F~~~e~A~~Ai~~Ln 335 (780)
..++|+ +|..+...+|.++|+.||.|.-..++ ...|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 456665 99999999999999999976444444 3469999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.17 E-value=19 Score=40.83 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=44.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcceEEEEEEecHHHHHHHHHHccC
Q 004002 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251 (780)
Q Consensus 193 ~tLfVgNLp~~vteeeLr~lF~~yG~I~sv~~tgkskG~aFV~F~~~e~A~~Al~~Lng 251 (780)
..++|+ +|..+...+|.++|+.||.|.-... ....|||.|.+.+.|..+++++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 577787 9999999999999999997643323 234699999999999999998753
No 403
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=22.07 E-value=20 Score=33.29 Aligned_cols=16 Identities=56% Similarity=0.738 Sum_probs=0.5
Q ss_pred CCCCCCCCCCCCCCCC
Q 004002 551 LGSSQHHHVGSAPSGV 566 (780)
Q Consensus 551 ~~~~~~hhvgsap~~~ 566 (780)
.++|||||-|||-+.+
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (157)
T 2qih_A 2 RGSHHHHHHGSATSAN 17 (157)
T ss_dssp ---------------C
T ss_pred CCcccccccccccccc
Confidence 4678899999997655
No 404
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=21.04 E-value=58 Score=29.65 Aligned_cols=14 Identities=57% Similarity=0.987 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCC
Q 004002 551 LGSSQHHHVGSAPS 564 (780)
Q Consensus 551 ~~~~~~hhvgsap~ 564 (780)
.++|||||-||-|.
T Consensus 2 ~~~~~~~~~~~~~~ 15 (128)
T 2ls0_1 2 RGSHHHHHHGSEPT 15 (128)
T ss_dssp CSCCCCCCCCSCCC
T ss_pred CccccccccCCCCC
Confidence 46788999999983
Done!