BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004004
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 87/116 (75%), Gaps = 1/116 (0%)
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705
E+ ++ G + + G AYVPQ +WIQ ++RENILFG + + +Y V++ CAL D+E+
Sbjct: 54 EMDKVEGH-VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEI 112
Query: 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
GD + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+
Sbjct: 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 71/112 (63%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +A+ D
Sbjct: 73 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 132
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 133 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 184
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 71/112 (63%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +A+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 151 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 202
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 150 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q+SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LS GQ+ +I LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 151 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 202
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q+SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 119
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 120 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 171
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
V+GE GI LS GQ+ +I LARAVY ++D+Y+ D PF +D T +F++
Sbjct: 150 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/494 (23%), Positives = 196/494 (39%), Gaps = 54/494 (10%)
Query: 295 PFLITNFVSFLSGKH----DHSSYHYGLVLA-SVFLFA---KTVESLTQRQWYFGANRIG 346
P LI + + H D +H + + ++F+F +E + Q + +N+I
Sbjct: 34 PLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKIL 93
Query: 347 IRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQV 402
+R L Y A+ +A G +I+ + DVE+ DF L + IWL + +
Sbjct: 94 YDIRKKL----YNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149
Query: 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLK 462
+AL I++ L AALF F +++ R + +A E ++
Sbjct: 150 IIALSIMFF-LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQ 208
Query: 463 SMRVLKLLSWE-QEFXXXXXXXXEIERDSLKKY---LYTCSAIAFLFWASPTLVSVITFG 518
+ V+K + E E +LK Y+ +AI + P +V I G
Sbjct: 209 GISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIV--IGVG 266
Query: 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED-NQKK 577
+ + +T G + + + +L P+ L + + Q+ S+ R+ + I ED + K
Sbjct: 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKN 326
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXXXXXXXXX 637
+ + IDI+ + ++ E P +K I
Sbjct: 327 GVGAQPIEIKQGRIDIDHVSFQYNDNE----APILK-----DINLSIEKGETVAFVGMSG 377
Query: 638 XXXXXXXXEIPR----------ISGAAIK------VHGKKAYVPQSSWIQTGTIRENILF 681
IPR I G IK + + V Q + + + T++ENIL
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 682 GKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
G+ EEV+E + + I G + VGERG+ LSGGQKQR+ +AR +N
Sbjct: 438 GRPTATD--EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495
Query: 739 SDVYIFDDPFSAVD 752
+ I D+ SA+D
Sbjct: 496 PPILILDEATSALD 509
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVGERG 718
A V Q + TI ENI GK+ EE++ C + + I+ +G ++VG+RG
Sbjct: 495 AVVSQEPALFNCTIEENISLGKEGITR--EEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
LSGGQKQRI +ARA+ N + + D+ SA+DA +
Sbjct: 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVGERG 718
A V Q + +I ENI++G D +V E L + I +G + VG+RG
Sbjct: 1156 AIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
LSGGQKQRI +ARA+ N + + D+ SA+D +
Sbjct: 1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 662 AYVPQSSWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V Q S I GTIREN+ +G D +VL+ +E D + VGERG+
Sbjct: 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
+SGGQ+QR+ +ARA N + + D+ +++D+ + + + KA
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD----IEMWADGDLS 712
+ K V Q + + +I ENI +G D S E ++ A + I + G +
Sbjct: 416 LRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNT 475
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
VVGE+G+ LSGGQKQRI +ARA+ N + + D+ SA+DA
Sbjct: 476 VVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 660 KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD----IEMWADGDLSVVG 715
K V Q + + +I ENI +G D S E ++ A + I + G +VVG
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
E+G+ LSGGQKQRI +ARA+ N + + D+ SA+DA
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 549
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMWADGDLSV 713
+ G + VPQ + + +GTI+EN+ +G++ + +E++E + Q I +G S
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSR 472
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
V G N SGGQKQR+ +ARA+ V I DD S+VD T
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730
+I ENI +G + R YEE++ ++Q I+ D + VG++G LSGGQKQRI
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHT 755
+ARA+ + + D+ SA+D +
Sbjct: 1182 IARALVRQPHILLLDEATSALDTES 1206
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 664 VPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q + TI ENI +G++ + V E A + +++ D ++VGERG L
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD-TLVGERGAQL 527
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
SGGQKQRI +ARA+ N + + D+ SA+D +
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730
+I ENI +G + R YEE++ ++Q I+ D + VG++G LSGGQKQRI
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHT 755
+ARA+ + + D+ SA+D +
Sbjct: 1182 IARALVRQPHILLLDEATSALDTES 1206
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 664 VPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q + TI ENI +G++ + V E A + +++ D ++VGERG L
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD-TLVGERGAQL 527
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
SGGQKQRI +ARA+ N + + D+ SA+D +
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIE 704
+I +++ A+++ H VPQ + + TI +NI +G+ E + ++ I
Sbjct: 117 DISQVTQASLRSH--IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+ +G + VGERG+ LSGG+KQR+ +AR + + + D+ SA+D
Sbjct: 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 222
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ--D-IEMWADGDLSVVGERGIN 720
VPQ + + TI+ NIL+GK + EEV++ Q D IE ++VG +G+
Sbjct: 98 VPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
LSGG++QRI +AR + + + IFD+ S++D+ T
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 662 AYVPQSSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
A V Q+ + TI NI + G+ R+ + + A+ + IE G +V+GE G
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENG 478
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
+LSGGQ+QR+ +ARA+ ++ V I D+ SA+D +
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQD-IEMWADGDLSVVGERG 718
A V Q+ + T+ NI + + Q E++ E A D I +G +V+GE G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYAR-TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
+ LSGGQ+QRI +ARA+ +S + I D+ SA+D +
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 173
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 173
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD SA+D
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD 177
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQD-IEMWADGDLSVVGERG 718
A V Q+ + T+ NI + + S E++ E A D I +G +++GE G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYS-REQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
+ LSGGQ+QRI +ARA+ +S + I D+ SA+D +
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LEGCALNQDIEMWADGDLS 712
+H + A V Q + + RENI +G R EE+ +E A + I + G +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGA-HDFISGFPQGYDT 148
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
VGE G LSGGQ+Q + LARA+ + I D+ SA+DA
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
+++N+ FG M++ + + A + IE D + LSGG++QR+ LAR
Sbjct: 88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTLSGGEQQRVALAR 140
Query: 734 AVYSNSDVYIFDDPFSAVDAHT 755
A+ +N + + D+P SA+D T
Sbjct: 141 ALVTNPKILLLDEPLSALDPRT 162
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LEGCALNQDIEMWADGDLS 712
+H + A V Q + + RENI +G R EE+ +E A + I + G +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGA-HDFISGFPQGYDT 148
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
VGE G LSGGQ+Q + LARA+ + I D SA+DA
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
D G+ ++LSGGQ+QR+ +ARA+ DV +FD+P SA+D
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765
LSGGQ+QR+ LARA+ V +FD+PF+A+D L RTF
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL---RTF 187
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSV 713
+H + A V Q + +++ENI +G + + EE+ + I G +
Sbjct: 89 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTM-EEITAAAVKSGAHSFISGLPQGYDTE 147
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
V E G LSGGQ+Q + LARA+ V I DD SA+DA++
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
NLSGGQKQR+ +ARA+ SN V + D+ SA+D T
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
T+ ENI F R+ +EV E + ++ D +++ + LSGGQ+QR+ LAR
Sbjct: 91 TVFENIAFPLRARRISKDEV-EKRVVEIARKLLID---NLLDRKPTQLSGGQQQRVALAR 146
Query: 734 AVYSNSDVYIFDDPFSAVDAH 754
A+ V +FD+P S +DA+
Sbjct: 147 ALVKQPKVLLFDEPLSNLDAN 167
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ +ARA+ DV + D+P S +DA
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 175
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ +ARA+ DV + D+P S +DA
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLSGGQKQRIQL 731
T+ +NI F +R+ +E+ +Q + A+ G ++ + LSGGQ+QR+ L
Sbjct: 97 TVYDNIAFPLKLRKVPRQEI------DQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150
Query: 732 ARAVYSNSDVYIFDDPFSAVDAH 754
RA+ V++ D+P S +DA
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLDAK 173
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
NLSGGQKQR+ +ARA+ SN V + D SA+D T
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
NLSGGQKQR+ +ARA+ SN V + D SA+D T
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756
LSGGQ+QR+ +ARA+ +N + + D+P A+D+ TG
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
LSGGQ+QR+ LARA+ + + + D+PFS +DA
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LEGCALNQDIEMWADGDLS 712
+H + A V Q + + RENI +G R EE+ +E A + I + G +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGA-HDFISGFPQGYDT 148
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
VGE G L+ GQ+Q + LARA+ + I D+ SA+DA
Sbjct: 149 EVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ +ARA+ +V + D+P S +DA
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ L RA+ V++ D+P S +DA
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA 175
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765
LSGG++QR+ LARA+ + + D+P SAVD T L + F
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
+V+ + LSGG KQR+ +A A+ + V I D+P SA+D T H+ +
Sbjct: 146 AVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+LSGGQ QR+ +ARA+ + +FD+P SA+D
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+LSGGQ QR+ +ARA+ + +FD+P SA+D
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
LSG Q+QR+ LARA+ + + + D+PFS +DA
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ + R + + V++ D+P S +DA
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ + R + + V++ D+P S +DA
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+K+ K YV +S GT+ E IL D R +EV E + +W + D ++
Sbjct: 86 LKIVHKIQYVEYASKFLKGTVNE-ILTKIDERGK-KDEVKELLNMTN---LW-NKDANI- 138
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFS 774
LSGG QR+ +A ++ +DVYIFD P S +D ++ KA L ++ +
Sbjct: 139 ------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
Query: 775 INH 777
++H
Sbjct: 193 VDH 195
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
F+EEV + L++ +E + +LSGG+ Q++ +A + +D+Y+ D P
Sbjct: 365 FFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEADLYVLDQPS 413
Query: 749 SAVDAHTG----------THLFKARTFSLFHQL 771
S +D T KA TF + H L
Sbjct: 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753
LSGGQ+QR+ + R + + V++ D P S +DA
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 660 KKAY--VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+KA+ +PQ +I +GT R+N+ +V + L IE + V+ +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755
G LS G KQ + LAR+V S + + + D+P + +D T
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762
LS G +R+QLA + N+++Y+ DDP A+D + + K+
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK--------ARTFSLF-HQL 771
LSGG+K+R+ +A + D+ I D+P +D T L + +T L H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 772 LFSINHI 778
INH+
Sbjct: 201 ETVINHV 207
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK--------ARTFSLF-HQL 771
LSGG+K+R+ +A + D+ I D+P +D T L + +T L H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 772 LFSINHI 778
INH+
Sbjct: 199 ETVINHV 205
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG K ++ LARAV N+D+ + D+P + +D
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+LSGGQ+Q I +ARA+ S + + D+P SA+D
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG K ++ LARAV N+D+ + D+P + +D
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG K ++ LARAV N+D+ + D+P + +D
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761
+NLSGGQKQR+ +A + ++ D+P S +D + +F+
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ 181
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+L V ER I +LSGG+ QR+ +A A+ N+ Y FD+P S +D
Sbjct: 147 ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 716 ERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
+R +N LSGG+ QR+ +A + ++D+Y+ D+P + +D
Sbjct: 396 DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDPFSAVDAHTGTHLFK-ARTFSLFH 769
+G+ LSGG+ QR++LA ++ S+ +YI D+P TG H+ AR + H
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT------TGLHVDDIARLLDVLH 892
Query: 770 QLL 772
+L+
Sbjct: 893 RLV 895
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDPFSAVDAHTGTHLFK-ARTFSLFH 769
+G+ LSGG+ QR++LA ++ S+ +YI D+P TG H+ AR + H
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT------TGLHVDDIARLLDVLH 590
Query: 770 QLL 772
+L+
Sbjct: 591 RLV 593
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDPFSAVDAHTGTHLFK-ARTFSLFH 769
+G+ LSGG+ QR++LA ++ S+ +YI D+P TG H+ AR + H
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT------TGLHVDDIARLLDVLH 892
Query: 770 QLL 772
+L+
Sbjct: 893 RLV 895
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG+ QR + + +DVY+FD+P S +D
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDL---SVVGERGINLSGGQKQRIQLARAVYS 737
F +RQ F++++ G LN + L ++ + +LSGG+ QR+ + A+
Sbjct: 426 FPGTVRQLFFKKI-RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI 484
Query: 738 NSDVYIFDDPFSAVDAH 754
+D+Y+ D+P + +D+
Sbjct: 485 PADIYLIDEPSAYLDSE 501
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LS G+KQR+ +ARA+ V I D+P + +D
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754
+LSGG+ QR+ +A + ++D+Y+ D+P + +D
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 491
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG+ QR+ +A A+ + Y FD+P S +D
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
+LSGG+ QR+ +A + ++D+Y+ D+P + +D
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG+ QR+ +A A+ + Y FD+P S +D
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF--------KARTFSLF-HQL 771
LSGGQ + +++ RA+ +N + + D+P + V +F K TF + H+L
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 772 LFSINHI 778
+N+I
Sbjct: 214 DIVLNYI 220
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF--------KARTFSLF-HQL 771
LSGGQ + +++ RA+ +N + + D+P + V +F K TF + H+L
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 772 LFSINHI 778
+N+I
Sbjct: 214 DIVLNYI 220
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 704 EMWADGDLSVVGERGIN-LSGGQKQRIQLARAVY-----SNSDVYIF-DDPFSAVDAHTG 756
++ A D + +R LSGG++QR+QLAR + + ++F D+P SA+D +
Sbjct: 124 QVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183
Query: 757 THLFK 761
H +
Sbjct: 184 QHTLR 188
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF--------KARTFSLF-HQL 771
LSGGQ + +++ RA+ +N + + D P + V +F K TF + H+L
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 772 LFSINHI 778
+N+I
Sbjct: 214 DIVLNYI 220
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ 770
+G+ LSGG+ QR++LA + S VYI D+P TG H F +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT------TGLH------FDDIRK 904
Query: 771 LLFSINHI 778
LL IN +
Sbjct: 905 LLNVINGL 912
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,153,355
Number of Sequences: 62578
Number of extensions: 694378
Number of successful extensions: 1901
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 107
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)