Query 004004
Match_columns 779
No_of_seqs 490 out of 3178
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 4E-130 8E-135 1184.1 72.3 569 201-777 122-701 (1381)
2 PLN03130 ABC transporter C fam 100.0 5E-106 1E-110 1022.6 89.4 748 7-777 29-798 (1622)
3 PLN03232 ABC transporter C fam 100.0 3E-104 6E-109 1006.0 88.7 752 8-777 30-798 (1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-98 6E-103 952.4 90.3 570 199-777 199-820 (1522)
5 TIGR01271 CFTR_protein cystic 100.0 4.4E-97 1E-101 938.8 70.9 568 201-777 3-606 (1490)
6 PTZ00243 ABC transporter; Prov 100.0 4.1E-86 8.9E-91 839.3 68.1 574 199-777 57-840 (1560)
7 TIGR02868 CydC thiol reductant 100.0 6.3E-72 1.4E-76 649.5 64.6 499 267-777 5-527 (529)
8 PRK11174 cysteine/glutathione 100.0 6.8E-72 1.5E-76 657.2 64.5 499 264-777 11-542 (588)
9 KOG0058 Peptide exporter, ABC 100.0 2E-72 4.3E-77 635.5 56.1 500 266-777 138-661 (716)
10 COG2274 SunT ABC-type bacterio 100.0 3.9E-70 8.5E-75 639.7 65.8 503 263-777 142-666 (709)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.9E-69 1.7E-73 641.3 65.9 499 265-777 126-643 (686)
12 TIGR03375 type_I_sec_LssB type 100.0 8.9E-69 1.9E-73 641.6 66.2 502 264-777 136-658 (694)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.8E-69 1.5E-73 644.4 63.2 500 265-777 144-670 (710)
14 TIGR00958 3a01208 Conjugate Tr 100.0 2.9E-68 6.4E-73 637.1 66.0 498 268-777 154-672 (711)
15 TIGR01193 bacteriocin_ABC ABC- 100.0 5.6E-67 1.2E-71 627.5 65.1 497 266-777 147-667 (708)
16 TIGR02203 MsbA_lipidA lipid A 100.0 7.7E-67 1.7E-71 612.4 64.8 500 266-777 5-526 (571)
17 PRK11176 lipid transporter ATP 100.0 2.4E-66 5.2E-71 609.5 64.4 500 266-777 16-537 (582)
18 TIGR02857 CydD thiol reductant 100.0 2.2E-66 4.8E-71 603.0 63.3 492 274-777 2-515 (529)
19 PRK10790 putative multidrug tr 100.0 2.3E-65 5E-70 602.1 66.7 498 266-777 14-533 (592)
20 TIGR02204 MsbA_rel ABC transpo 100.0 3.3E-65 7.2E-70 599.2 64.3 503 265-777 8-533 (576)
21 TIGR01842 type_I_sec_PrtD type 100.0 2E-64 4.4E-69 588.1 63.0 491 271-777 2-512 (544)
22 PRK13657 cyclic beta-1,2-gluca 100.0 4.2E-64 9.2E-69 590.8 65.1 493 268-777 12-528 (588)
23 PRK11160 cysteine/glutathione 100.0 4.1E-64 8.9E-69 588.5 64.4 500 268-777 9-532 (574)
24 COG1132 MdlB ABC-type multidru 100.0 7.5E-64 1.6E-68 586.3 63.4 481 268-764 9-509 (567)
25 TIGR01846 type_I_sec_HlyB type 100.0 7.5E-64 1.6E-68 598.9 64.5 501 265-777 129-650 (694)
26 PRK10789 putative multidrug tr 100.0 1.7E-63 3.6E-68 583.0 62.9 484 284-777 4-508 (569)
27 KOG0055 Multidrug/pheromone ex 100.0 9.5E-64 2.1E-68 593.2 59.4 485 270-764 659-1169(1228)
28 PTZ00265 multidrug resistance 100.0 2.2E-62 4.9E-67 618.1 65.7 496 270-777 820-1417(1466)
29 TIGR01192 chvA glucan exporter 100.0 1E-61 2.2E-66 569.2 65.2 493 268-777 12-528 (585)
30 COG4988 CydD ABC-type transpor 100.0 1.5E-61 3.3E-66 538.4 60.1 482 279-777 4-513 (559)
31 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-59 3.3E-64 598.0 63.7 426 343-777 1030-1478(1522)
32 KOG0057 Mitochondrial Fe/S clu 100.0 4.9E-60 1.1E-64 518.2 50.4 480 288-777 43-544 (591)
33 PLN03130 ABC transporter C fam 100.0 2E-58 4.3E-63 587.4 63.3 426 343-777 978-1431(1622)
34 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-57 3.2E-62 531.1 57.9 487 268-777 10-529 (555)
35 PLN03232 ABC transporter C fam 100.0 1.5E-57 3.2E-62 579.1 61.7 425 343-777 975-1428(1495)
36 KOG0055 Multidrug/pheromone ex 100.0 4.1E-59 8.9E-64 553.8 41.6 424 333-764 90-532 (1228)
37 PTZ00243 ABC transporter; Prov 100.0 4.6E-57 1E-61 574.1 62.8 420 350-777 1030-1503(1560)
38 COG4987 CydC ABC-type transpor 100.0 1.3E-56 2.8E-61 491.0 53.7 497 264-778 6-532 (573)
39 PTZ00265 multidrug resistance 100.0 5.8E-56 1.3E-60 560.0 62.4 494 270-777 55-638 (1466)
40 COG4618 ArpD ABC-type protease 100.0 2.2E-56 4.7E-61 484.9 49.1 483 263-762 11-514 (580)
41 KOG0056 Heavy metal exporter H 100.0 1.3E-58 2.7E-63 495.7 26.7 469 280-760 220-714 (790)
42 PRK10522 multidrug transporter 100.0 1.8E-54 3.9E-59 504.7 58.4 481 265-777 3-508 (547)
43 TIGR01271 CFTR_protein cystic 100.0 2.3E-54 4.9E-59 549.1 63.6 423 344-777 951-1410(1490)
44 TIGR00954 3a01203 Peroxysomal 100.0 4.6E-54 1E-58 509.3 55.6 487 276-777 97-637 (659)
45 COG5265 ATM1 ABC-type transpor 100.0 4.9E-52 1.1E-56 442.0 34.0 402 351-761 15-440 (497)
46 KOG0054 Multidrug resistance-a 100.0 1.2E-49 2.5E-54 483.8 54.3 417 344-770 884-1324(1381)
47 PRK14257 phosphate ABC transpo 100.0 4.6E-42 1E-46 374.5 17.9 231 525-777 23-282 (329)
48 COG4178 ABC-type uncharacteriz 100.0 2E-36 4.3E-41 343.1 49.3 425 339-777 107-572 (604)
49 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-37 2.3E-42 332.0 18.2 165 590-761 2-179 (275)
50 cd03250 ABCC_MRP_domain1 Domai 100.0 1.6E-37 3.5E-42 317.2 18.5 182 591-777 1-186 (204)
51 COG1116 TauB ABC-type nitrate/ 100.0 5.8E-37 1.3E-41 311.9 15.0 168 590-777 3-189 (248)
52 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.1E-35 8.9E-40 313.3 21.5 190 564-765 15-204 (282)
53 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5E-35 1.1E-39 301.6 17.2 168 589-777 3-197 (254)
54 COG1126 GlnQ ABC-type polar am 100.0 4.6E-35 1E-39 289.7 15.8 153 590-761 2-177 (240)
55 cd03290 ABCC_SUR1_N The SUR do 100.0 9.4E-35 2E-39 299.8 18.8 164 592-762 2-182 (218)
56 cd03244 ABCC_MRP_domain2 Domai 100.0 1.9E-34 4.2E-39 298.0 20.1 166 590-761 2-180 (221)
57 cd03252 ABCC_Hemolysin The ABC 100.0 2E-34 4.3E-39 301.2 17.7 166 591-762 1-180 (237)
58 KOG0060 Long-chain acyl-CoA tr 100.0 1.2E-31 2.6E-36 295.7 40.2 420 336-764 140-614 (659)
59 cd03288 ABCC_SUR2 The SUR doma 100.0 2.2E-34 4.9E-39 304.6 18.1 168 588-761 17-197 (257)
60 cd03245 ABCC_bacteriocin_expor 100.0 3.8E-34 8.2E-39 295.6 18.5 167 590-762 2-182 (220)
61 cd03254 ABCC_Glucan_exporter_l 100.0 2.9E-34 6.2E-39 298.3 17.5 169 590-766 2-184 (229)
62 COG1136 SalX ABC-type antimicr 100.0 5.9E-34 1.3E-38 289.7 17.6 171 591-777 2-201 (226)
63 COG3839 MalK ABC-type sugar tr 100.0 3.5E-34 7.6E-39 307.5 16.4 154 590-762 3-175 (338)
64 COG1117 PstB ABC-type phosphat 100.0 1.9E-34 4.1E-39 284.1 13.1 165 589-769 6-197 (253)
65 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-33 2.2E-38 295.1 17.8 169 591-766 1-183 (234)
66 cd03253 ABCC_ATM1_transporter 100.0 2.1E-33 4.5E-38 293.2 19.5 164 591-761 1-178 (236)
67 COG1135 AbcC ABC-type metal io 100.0 5.5E-34 1.2E-38 295.4 14.3 157 591-761 2-182 (339)
68 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.2E-33 7E-38 292.2 18.7 166 591-761 1-180 (238)
69 cd03248 ABCC_TAP TAP, the Tran 100.0 3.3E-33 7.2E-38 289.8 18.4 169 588-761 9-191 (226)
70 PRK11650 ugpC glycerol-3-phosp 100.0 6.7E-33 1.5E-37 305.4 17.5 169 590-777 3-193 (356)
71 COG3840 ThiQ ABC-type thiamine 100.0 2E-33 4.3E-38 270.0 11.5 149 591-760 2-169 (231)
72 COG3842 PotA ABC-type spermidi 100.0 3.4E-33 7.3E-38 301.5 14.6 169 589-777 4-195 (352)
73 COG4615 PvdE ABC-type sideroph 100.0 3.3E-29 7.1E-34 265.0 43.1 470 266-770 4-497 (546)
74 TIGR00960 3a0501s02 Type II (G 100.0 9.6E-33 2.1E-37 284.4 15.8 159 591-767 2-184 (216)
75 COG1120 FepC ABC-type cobalami 100.0 1.2E-32 2.6E-37 285.4 15.8 153 590-761 2-179 (258)
76 cd03260 ABC_PstB_phosphate_tra 100.0 1.1E-32 2.3E-37 286.2 15.2 159 591-767 1-187 (227)
77 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-32 2.7E-37 283.0 15.5 157 591-767 1-176 (213)
78 cd03223 ABCD_peroxisomal_ALDP 100.0 1.4E-32 3.1E-37 271.8 15.2 130 591-761 1-132 (166)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-32 3.1E-37 283.4 15.4 163 591-769 1-188 (218)
80 cd03226 ABC_cobalt_CbiO_domain 100.0 2.5E-32 5.5E-37 279.1 16.4 157 592-767 1-172 (205)
81 PRK13631 cbiO cobalt transport 100.0 2.9E-32 6.3E-37 296.6 17.7 175 589-777 20-234 (320)
82 cd03261 ABC_Org_Solvent_Resist 100.0 2.4E-32 5.2E-37 285.1 15.6 157 591-767 1-182 (235)
83 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.8E-32 1.9E-36 275.5 19.3 149 589-761 5-166 (207)
84 cd03235 ABC_Metallic_Cations A 100.0 3.6E-32 7.9E-37 279.5 16.4 151 592-761 1-173 (213)
85 COG1125 OpuBA ABC-type proline 100.0 7.4E-33 1.6E-37 279.1 10.8 168 591-777 2-194 (309)
86 TIGR01186 proV glycine betaine 100.0 1.3E-32 2.9E-37 302.6 13.4 156 609-777 6-188 (363)
87 cd03301 ABC_MalK_N The N-termi 100.0 3.9E-32 8.4E-37 279.2 15.5 157 591-767 1-176 (213)
88 PRK11432 fbpC ferric transport 100.0 4.1E-32 9E-37 298.5 16.5 160 590-769 6-184 (351)
89 cd03296 ABC_CysA_sulfate_impor 100.0 6.3E-32 1.4E-36 282.8 17.1 158 591-768 3-183 (239)
90 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.6E-32 1.2E-36 279.5 16.1 157 591-762 1-173 (220)
91 PRK13650 cbiO cobalt transport 100.0 4.8E-32 1.1E-36 290.1 16.0 171 590-777 4-199 (279)
92 cd03268 ABC_BcrA_bacitracin_re 100.0 6.4E-32 1.4E-36 276.7 16.1 167 591-777 1-184 (208)
93 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-32 1E-36 296.7 15.8 171 591-777 2-199 (343)
94 cd03292 ABC_FtsE_transporter F 100.0 6.5E-32 1.4E-36 277.6 15.6 153 591-761 1-177 (214)
95 PRK14269 phosphate ABC transpo 100.0 4.5E-32 9.9E-37 285.1 14.8 161 590-766 2-187 (246)
96 COG3638 ABC-type phosphate/pho 100.0 5.4E-32 1.2E-36 271.2 14.5 154 590-761 3-188 (258)
97 TIGR02211 LolD_lipo_ex lipopro 100.0 8.6E-32 1.9E-36 278.2 16.3 161 591-767 2-187 (221)
98 PRK09452 potA putrescine/sperm 100.0 8.3E-32 1.8E-36 298.1 17.2 161 589-769 13-192 (375)
99 PRK13637 cbiO cobalt transport 100.0 7.5E-32 1.6E-36 289.7 16.2 175 590-777 2-203 (287)
100 PRK11247 ssuB aliphatic sulfon 100.0 1.6E-31 3.5E-36 282.4 18.2 160 589-768 11-180 (257)
101 TIGR02673 FtsE cell division A 100.0 8.6E-32 1.9E-36 276.9 15.7 154 591-762 2-179 (214)
102 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-31 2.6E-36 281.1 17.1 168 591-777 2-204 (243)
103 cd03225 ABC_cobalt_CbiO_domain 100.0 8.4E-32 1.8E-36 276.3 15.5 158 592-767 1-180 (211)
104 PRK11000 maltose/maltodextrin 100.0 8.8E-32 1.9E-36 298.4 16.8 168 590-777 3-192 (369)
105 PRK14242 phosphate transporter 100.0 8.6E-32 1.9E-36 284.1 15.8 163 589-767 5-195 (253)
106 COG1118 CysA ABC-type sulfate/ 100.0 6.8E-32 1.5E-36 279.2 14.4 152 590-760 2-177 (345)
107 cd03264 ABC_drug_resistance_li 100.0 6E-32 1.3E-36 277.5 13.9 151 591-761 1-171 (211)
108 TIGR00972 3a0107s01c2 phosphat 100.0 1E-31 2.3E-36 282.5 15.8 161 591-767 2-190 (247)
109 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.9E-31 4.1E-36 273.8 17.1 155 591-767 1-174 (211)
110 PRK14250 phosphate ABC transpo 100.0 2.5E-31 5.4E-36 278.7 18.2 160 590-768 3-178 (241)
111 PRK10247 putative ABC transpor 100.0 2.8E-31 6E-36 275.4 18.3 161 589-768 6-184 (225)
112 COG1122 CbiO ABC-type cobalt t 100.0 9.3E-32 2E-36 278.3 14.6 169 590-777 3-197 (235)
113 PRK10851 sulfate/thiosulfate t 100.0 1.4E-31 3.1E-36 294.6 16.9 168 590-777 2-195 (353)
114 TIGR03265 PhnT2 putative 2-ami 100.0 1E-31 2.2E-36 295.7 15.4 160 590-769 4-182 (353)
115 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-31 2.5E-36 277.2 14.8 167 591-777 1-190 (220)
116 PRK14273 phosphate ABC transpo 100.0 2E-31 4.2E-36 281.6 16.8 161 590-766 7-195 (254)
117 PRK11629 lolD lipoprotein tran 100.0 1.9E-31 4.2E-36 278.0 16.5 162 590-767 5-191 (233)
118 PRK10744 pstB phosphate transp 100.0 1.9E-31 4.1E-36 282.7 16.5 162 589-766 12-201 (260)
119 cd03263 ABC_subfamily_A The AB 100.0 1.4E-31 3.1E-36 276.4 15.1 154 591-761 1-174 (220)
120 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-31 2.6E-36 279.9 14.7 152 591-761 1-184 (236)
121 cd03266 ABC_NatA_sodium_export 100.0 1.9E-31 4.1E-36 275.1 15.9 161 591-767 2-182 (218)
122 PRK13647 cbiO cobalt transport 100.0 2E-31 4.4E-36 284.5 16.1 159 590-767 4-184 (274)
123 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-31 3.5E-36 294.7 15.6 161 589-769 4-185 (362)
124 cd03256 ABC_PhnC_transporter A 100.0 2.5E-31 5.4E-36 278.3 16.2 168 591-777 1-203 (241)
125 COG2884 FtsE Predicted ATPase 100.0 1.9E-31 4.1E-36 258.5 13.9 153 591-761 2-178 (223)
126 cd03262 ABC_HisP_GlnQ_permease 100.0 2.9E-31 6.2E-36 272.7 16.1 156 591-766 1-180 (213)
127 PRK10584 putative ABC transpor 100.0 3.9E-31 8.5E-36 274.7 17.2 161 590-767 6-192 (228)
128 PRK13634 cbiO cobalt transport 100.0 3.5E-31 7.7E-36 284.9 17.0 163 591-767 3-191 (290)
129 cd03269 ABC_putative_ATPase Th 100.0 3.3E-31 7.1E-36 271.8 15.6 153 591-762 1-170 (210)
130 cd03247 ABCC_cytochrome_bd The 100.0 2.4E-31 5.2E-36 266.0 14.2 128 591-762 1-140 (178)
131 PRK14259 phosphate ABC transpo 100.0 4.3E-31 9.3E-36 281.3 16.9 162 589-766 12-199 (269)
132 cd03258 ABC_MetN_methionine_tr 100.0 4E-31 8.6E-36 275.6 16.2 162 591-768 2-187 (233)
133 cd03231 ABC_CcmA_heme_exporter 100.0 8E-31 1.7E-35 267.3 18.0 156 591-766 1-170 (201)
134 PRK13643 cbiO cobalt transport 100.0 4.5E-31 9.8E-36 283.8 16.9 158 591-761 2-185 (288)
135 PRK13632 cbiO cobalt transport 100.0 3.6E-31 7.8E-36 282.3 15.9 161 590-768 7-189 (271)
136 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.6E-31 3.5E-36 284.5 13.0 155 593-767 27-206 (269)
137 TIGR01277 thiQ thiamine ABC tr 100.0 5.7E-31 1.2E-35 270.7 16.5 149 592-761 2-169 (213)
138 COG1124 DppF ABC-type dipeptid 100.0 1E-30 2.3E-35 263.9 17.8 157 590-761 3-182 (252)
139 cd03257 ABC_NikE_OppD_transpor 100.0 3.4E-31 7.5E-36 274.8 14.8 172 591-777 2-204 (228)
140 PRK13635 cbiO cobalt transport 100.0 7E-31 1.5E-35 281.0 17.6 161 590-768 5-187 (279)
141 PRK11607 potG putrescine trans 100.0 4.1E-31 8.9E-36 293.0 16.2 161 589-769 18-197 (377)
142 PRK13646 cbiO cobalt transport 100.0 5.2E-31 1.1E-35 283.1 16.5 159 590-761 2-186 (286)
143 PRK14237 phosphate transporter 100.0 5E-31 1.1E-35 280.5 16.2 162 589-766 19-208 (267)
144 cd03224 ABC_TM1139_LivF_branch 100.0 5.2E-31 1.1E-35 272.5 15.8 157 591-766 1-177 (222)
145 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.1E-31 1.1E-35 275.4 15.8 158 591-768 2-179 (236)
146 PRK14235 phosphate transporter 100.0 4.8E-31 1E-35 280.7 15.7 163 588-766 17-208 (267)
147 PRK10908 cell division protein 100.0 7.2E-31 1.6E-35 271.7 16.4 158 591-767 2-183 (222)
148 TIGR03608 L_ocin_972_ABC putat 100.0 5.2E-31 1.1E-35 269.3 15.2 155 593-767 1-180 (206)
149 PRK14264 phosphate ABC transpo 100.0 6.3E-31 1.4E-35 284.9 16.6 162 589-766 44-245 (305)
150 PRK14251 phosphate ABC transpo 100.0 3.7E-31 8.1E-36 278.9 14.3 162 590-767 4-193 (251)
151 cd03246 ABCC_Protease_Secretio 100.0 6.4E-31 1.4E-35 261.7 14.9 124 591-761 1-137 (173)
152 PRK11153 metN DL-methionine tr 100.0 4.7E-31 1E-35 290.1 15.3 156 591-761 2-181 (343)
153 PRK14245 phosphate ABC transpo 100.0 4.2E-31 9.2E-36 278.4 14.2 161 590-766 3-191 (250)
154 PRK13640 cbiO cobalt transport 100.0 8.2E-31 1.8E-35 281.0 16.6 161 589-767 4-189 (282)
155 PRK14239 phosphate transporter 100.0 6E-31 1.3E-35 277.4 15.2 161 590-766 5-193 (252)
156 PRK13645 cbiO cobalt transport 100.0 8E-31 1.7E-35 282.1 16.4 173 589-777 5-209 (289)
157 PRK14254 phosphate ABC transpo 100.0 8.3E-31 1.8E-35 281.3 16.4 158 589-761 38-221 (285)
158 cd03218 ABC_YhbG The ABC trans 100.0 9.7E-31 2.1E-35 272.4 16.4 157 591-767 1-179 (232)
159 PRK14240 phosphate transporter 100.0 8.3E-31 1.8E-35 276.1 16.0 162 590-767 3-192 (250)
160 PRK14270 phosphate ABC transpo 100.0 9E-31 2E-35 276.0 16.3 162 590-767 4-193 (251)
161 PRK11124 artP arginine transpo 100.0 9E-31 2E-35 274.5 16.1 158 590-767 2-187 (242)
162 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.6E-31 9.9E-36 276.8 13.8 170 591-777 1-194 (242)
163 PRK14248 phosphate ABC transpo 100.0 6.8E-31 1.5E-35 279.7 15.2 163 589-767 20-210 (268)
164 PRK14249 phosphate ABC transpo 100.0 1.4E-30 3.1E-35 274.5 17.5 162 590-767 4-193 (251)
165 PRK09493 glnQ glutamine ABC tr 100.0 8.8E-31 1.9E-35 274.2 15.8 157 591-767 2-182 (240)
166 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-30 2.3E-35 262.6 15.4 170 588-777 6-204 (263)
167 PRK14236 phosphate transporter 100.0 8.8E-31 1.9E-35 279.4 15.9 162 589-766 24-213 (272)
168 PRK13651 cobalt transporter AT 100.0 9.9E-31 2.2E-35 282.9 16.4 158 591-761 3-206 (305)
169 PRK14274 phosphate ABC transpo 100.0 8.3E-31 1.8E-35 277.6 15.5 162 590-767 12-201 (259)
170 PRK13636 cbiO cobalt transport 100.0 1.2E-30 2.6E-35 279.9 16.9 160 590-768 5-188 (283)
171 PRK13540 cytochrome c biogenes 100.0 1.9E-30 4.1E-35 264.3 17.5 152 591-761 2-168 (200)
172 TIGR01189 ccmA heme ABC export 100.0 1.3E-30 2.8E-35 265.1 16.0 157 591-767 1-173 (198)
173 PRK10575 iron-hydroxamate tran 100.0 1.6E-30 3.6E-35 276.3 17.5 159 589-767 10-193 (265)
174 PRK11300 livG leucine/isoleuci 100.0 1.4E-30 2.9E-35 275.2 16.6 158 590-767 5-199 (255)
175 PRK10771 thiQ thiamine transpo 100.0 2E-30 4.4E-35 270.2 17.4 156 591-768 2-176 (232)
176 PRK14247 phosphate ABC transpo 100.0 1.1E-30 2.3E-35 275.3 15.4 158 590-762 3-188 (250)
177 PRK11248 tauB taurine transpor 100.0 1.9E-30 4.2E-35 274.2 17.4 152 591-761 2-169 (255)
178 PRK14243 phosphate transporter 100.0 2.3E-30 4.9E-35 275.0 18.0 163 589-767 9-197 (264)
179 PRK13538 cytochrome c biogenes 100.0 2.1E-30 4.5E-35 264.9 17.0 152 591-761 2-170 (204)
180 PRK13644 cbiO cobalt transport 100.0 2E-30 4.4E-35 276.8 17.6 154 591-762 2-178 (274)
181 COG4619 ABC-type uncharacteriz 100.0 3.1E-31 6.8E-36 251.6 10.0 148 608-768 15-180 (223)
182 PRK11831 putative ABC transpor 100.0 1.8E-30 4E-35 276.5 16.9 159 590-768 7-190 (269)
183 PRK14266 phosphate ABC transpo 100.0 1E-30 2.2E-35 275.4 14.8 161 590-766 3-191 (250)
184 PRK14261 phosphate ABC transpo 100.0 1.3E-30 2.8E-35 275.1 15.5 161 590-766 6-194 (253)
185 PRK14252 phosphate ABC transpo 100.0 1.6E-30 3.5E-35 276.4 16.2 158 589-761 15-202 (265)
186 TIGR03411 urea_trans_UrtD urea 100.0 1.6E-30 3.5E-35 272.5 15.7 156 591-766 3-188 (242)
187 PRK09544 znuC high-affinity zi 100.0 2.8E-30 6.2E-35 272.1 17.5 158 590-767 4-166 (251)
188 PRK13642 cbiO cobalt transport 100.0 2.2E-30 4.8E-35 277.0 16.8 161 590-767 4-186 (277)
189 cd03230 ABC_DR_subfamily_A Thi 100.0 1.8E-30 3.8E-35 258.5 14.8 128 591-767 1-141 (173)
190 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-30 3.7E-35 274.1 15.5 159 591-769 1-194 (252)
191 PRK14268 phosphate ABC transpo 100.0 1.2E-30 2.7E-35 276.2 14.5 162 589-766 11-199 (258)
192 PRK11231 fecE iron-dicitrate t 100.0 3.1E-30 6.7E-35 272.6 17.5 152 591-761 3-179 (255)
193 PRK14253 phosphate ABC transpo 100.0 1.9E-30 4E-35 273.3 15.6 162 590-767 3-191 (249)
194 PRK13541 cytochrome c biogenes 100.0 1.7E-30 3.8E-35 263.5 14.9 151 591-761 2-164 (195)
195 PRK13649 cbiO cobalt transport 100.0 2.2E-30 4.7E-35 277.5 16.4 160 590-762 2-187 (280)
196 PRK14271 phosphate ABC transpo 100.0 1.8E-30 3.8E-35 277.6 15.5 157 590-761 21-204 (276)
197 PRK14267 phosphate ABC transpo 100.0 1.4E-30 3E-35 274.9 14.5 157 590-761 4-190 (253)
198 TIGR02982 heterocyst_DevA ABC 100.0 2.3E-30 5E-35 267.6 15.8 162 591-768 2-188 (220)
199 PRK13633 cobalt transporter AT 100.0 3.5E-30 7.6E-35 275.9 17.3 164 590-767 4-190 (280)
200 PRK14262 phosphate ABC transpo 100.0 1.6E-30 3.5E-35 273.9 14.2 161 590-766 3-191 (250)
201 PRK14238 phosphate transporter 100.0 2.1E-30 4.6E-35 276.3 15.2 163 589-767 23-213 (271)
202 PRK14263 phosphate ABC transpo 100.0 2.8E-30 6.1E-35 273.8 15.9 159 589-762 7-191 (261)
203 PRK13648 cbiO cobalt transport 100.0 3.1E-30 6.7E-35 274.8 16.2 160 590-767 7-188 (269)
204 PRK14244 phosphate ABC transpo 100.0 1.5E-30 3.3E-35 274.3 13.7 161 591-767 6-195 (251)
205 PRK14260 phosphate ABC transpo 100.0 2.5E-30 5.4E-35 274.0 15.3 157 590-761 7-191 (259)
206 cd03233 ABC_PDR_domain1 The pl 100.0 3.2E-30 6.9E-35 263.1 15.4 148 590-769 3-166 (202)
207 TIGR01166 cbiO cobalt transpor 100.0 2.2E-30 4.8E-35 261.6 14.1 140 609-761 5-168 (190)
208 PRK10619 histidine/lysine/argi 100.0 3.4E-30 7.3E-35 272.7 16.1 160 589-767 4-198 (257)
209 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-30 4E-35 270.0 13.8 158 591-767 1-177 (230)
210 PRK10253 iron-enterobactin tra 100.0 5.2E-30 1.1E-34 272.5 17.5 155 588-761 5-184 (265)
211 cd03300 ABC_PotA_N PotA is an 100.0 2.9E-30 6.3E-35 269.0 15.3 152 591-761 1-171 (232)
212 PRK10070 glycine betaine trans 100.0 2.8E-30 6E-35 287.5 16.0 154 610-777 42-223 (400)
213 PRK13641 cbiO cobalt transport 100.0 4.5E-30 9.8E-35 276.0 17.1 164 590-767 2-191 (287)
214 PRK13539 cytochrome c biogenes 100.0 5.5E-30 1.2E-34 262.3 16.9 152 591-761 3-168 (207)
215 PRK13543 cytochrome c biogenes 100.0 6.8E-30 1.5E-34 263.0 17.6 159 589-767 10-183 (214)
216 PRK11264 putative amino-acid A 100.0 7.6E-30 1.6E-34 268.7 18.2 158 590-767 3-190 (250)
217 PRK09984 phosphonate/organopho 100.0 4.4E-30 9.6E-35 272.5 16.4 159 590-768 4-199 (262)
218 PRK13548 hmuV hemin importer A 100.0 9.1E-30 2E-34 269.5 18.6 158 591-768 3-187 (258)
219 PRK14256 phosphate ABC transpo 100.0 5E-30 1.1E-34 270.5 16.4 163 589-767 3-194 (252)
220 PRK11144 modC molybdate transp 100.0 4.8E-30 1E-34 283.1 16.9 164 591-777 2-187 (352)
221 TIGR01288 nodI ATP-binding ABC 100.0 6.1E-30 1.3E-34 277.1 17.2 154 589-761 3-176 (303)
222 TIGR03740 galliderm_ABC gallid 100.0 6E-30 1.3E-34 265.0 16.3 157 591-767 1-170 (223)
223 cd03229 ABC_Class3 This class 100.0 4.6E-30 1E-34 256.7 14.6 130 591-767 1-146 (178)
224 TIGR02769 nickel_nikE nickel i 100.0 8.3E-30 1.8E-34 270.9 17.4 166 591-769 3-198 (265)
225 PRK10895 lipopolysaccharide AB 100.0 8.7E-30 1.9E-34 266.9 17.2 157 590-766 3-182 (241)
226 TIGR00968 3a0106s01 sulfate AB 100.0 6.7E-30 1.5E-34 267.2 16.3 156 591-766 1-175 (237)
227 PRK13652 cbiO cobalt transport 100.0 9E-30 1.9E-34 272.3 17.6 154 590-761 3-178 (277)
228 PRK14255 phosphate ABC transpo 100.0 4.6E-30 1E-34 270.8 15.0 157 590-761 5-189 (252)
229 PRK13638 cbiO cobalt transport 100.0 8.1E-30 1.8E-34 271.8 16.8 157 591-767 2-182 (271)
230 PRK13639 cbiO cobalt transport 100.0 6.3E-30 1.4E-34 273.2 15.7 158 591-767 2-183 (275)
231 PRK14265 phosphate ABC transpo 100.0 9E-30 1.9E-34 271.9 16.8 158 589-761 19-202 (274)
232 TIGR03873 F420-0_ABC_ATP propo 100.0 1E-29 2.2E-34 268.9 16.7 157 591-767 2-183 (256)
233 PRK15056 manganese/iron transp 100.0 1.1E-29 2.3E-34 271.0 17.1 159 590-767 6-188 (272)
234 TIGR01978 sufC FeS assembly AT 100.0 9E-30 2E-34 266.9 16.2 159 591-767 1-190 (243)
235 cd03234 ABCG_White The White s 100.0 9.4E-30 2E-34 264.1 16.1 165 590-766 3-188 (226)
236 PRK14275 phosphate ABC transpo 100.0 5.7E-30 1.2E-34 275.0 14.9 163 588-766 37-227 (286)
237 PRK09536 btuD corrinoid ABC tr 100.0 9.1E-30 2E-34 283.5 16.9 153 590-761 3-180 (402)
238 PRK13537 nodulation ABC transp 100.0 1E-29 2.2E-34 275.4 16.5 159 589-767 6-184 (306)
239 PRK11614 livF leucine/isoleuci 100.0 1.5E-29 3.2E-34 264.5 17.1 158 590-761 5-178 (237)
240 TIGR03415 ABC_choXWV_ATP choli 100.0 6E-30 1.3E-34 282.9 14.3 143 609-764 37-208 (382)
241 PRK15079 oligopeptide ABC tran 100.0 1.4E-29 2.9E-34 276.8 16.9 176 589-777 7-220 (331)
242 PRK10418 nikD nickel transport 100.0 1.9E-29 4.2E-34 266.4 17.4 170 590-777 4-199 (254)
243 PRK14241 phosphate transporter 100.0 9.2E-30 2E-34 269.5 14.9 157 590-761 4-189 (258)
244 TIGR02324 CP_lyasePhnL phospho 100.0 2E-29 4.3E-34 261.2 16.4 164 591-767 2-195 (224)
245 cd03213 ABCG_EPDR ABCG transpo 100.0 1.5E-29 3.2E-34 256.7 15.0 142 590-767 3-157 (194)
246 PRK14272 phosphate ABC transpo 100.0 1.5E-29 3.2E-34 266.8 15.6 157 590-761 4-189 (252)
247 PRK11701 phnK phosphonate C-P 100.0 1.7E-29 3.6E-34 267.5 15.7 169 590-777 6-210 (258)
248 cd03228 ABCC_MRP_Like The MRP 100.0 2E-29 4.4E-34 250.5 15.4 124 591-761 1-137 (171)
249 cd03297 ABC_ModC_molybdenum_tr 100.0 2.2E-29 4.8E-34 259.1 15.9 160 595-777 5-190 (214)
250 cd03299 ABC_ModC_like Archeal 100.0 1.8E-29 3.9E-34 263.6 15.4 151 591-761 1-170 (235)
251 PRK13547 hmuV hemin importer A 100.0 2.7E-29 6E-34 267.6 16.7 159 591-769 2-202 (272)
252 PRK14258 phosphate ABC transpo 100.0 3.6E-29 7.8E-34 265.4 16.6 159 589-762 6-192 (261)
253 PRK13536 nodulation factor exp 100.0 3.1E-29 6.8E-34 274.7 15.9 154 589-761 40-213 (340)
254 TIGR03522 GldA_ABC_ATP gliding 100.0 3.9E-29 8.5E-34 270.5 16.1 152 591-761 3-174 (301)
255 PRK15112 antimicrobial peptide 100.0 5.5E-29 1.2E-33 264.9 16.3 175 590-777 4-208 (267)
256 cd03215 ABC_Carb_Monos_II This 100.0 4.3E-29 9.2E-34 250.6 14.6 129 590-767 4-150 (182)
257 PRK10419 nikE nickel transport 100.0 6.2E-29 1.3E-33 264.6 16.0 167 590-769 3-199 (268)
258 cd03232 ABC_PDR_domain2 The pl 100.0 4.8E-29 1E-33 252.4 14.4 136 590-762 3-150 (192)
259 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.3E-29 1.1E-33 261.6 14.8 161 598-777 1-174 (246)
260 PRK11308 dppF dipeptide transp 100.0 1.1E-28 2.4E-33 269.4 17.3 175 590-777 5-213 (327)
261 TIGR01188 drrA daunorubicin re 100.0 4.6E-29 9.9E-34 270.1 14.3 145 609-767 6-170 (302)
262 PRK14246 phosphate ABC transpo 100.0 9.8E-29 2.1E-33 261.5 16.4 158 589-761 9-194 (257)
263 TIGR01184 ntrCD nitrate transp 100.0 9E-29 1.9E-33 257.5 15.7 152 612-777 1-173 (230)
264 TIGR00955 3a01204 The Eye Pigm 100.0 3.3E-29 7.1E-34 295.8 13.9 148 608-764 37-210 (617)
265 TIGR02323 CP_lyasePhnK phospho 100.0 1.1E-28 2.5E-33 260.3 16.5 169 590-777 3-207 (253)
266 TIGR02142 modC_ABC molybdenum 100.0 8E-29 1.7E-33 273.7 15.7 161 595-777 4-190 (354)
267 CHL00131 ycf16 sulfate ABC tra 100.0 1.8E-28 3.9E-33 258.6 17.1 169 590-777 7-209 (252)
268 PRK11022 dppD dipeptide transp 100.0 1.6E-28 3.4E-33 268.2 16.3 160 591-762 4-195 (326)
269 COG4525 TauB ABC-type taurine 100.0 4.5E-29 9.9E-34 242.4 10.4 154 591-761 4-173 (259)
270 PRK15093 antimicrobial peptide 100.0 1.9E-28 4.1E-33 268.2 16.3 160 590-761 3-199 (330)
271 PRK13549 xylose transporter AT 100.0 2E-28 4.3E-33 283.4 16.7 168 590-777 5-201 (506)
272 COG1131 CcmA ABC-type multidru 100.0 2.6E-28 5.5E-33 262.4 16.1 162 590-770 4-185 (293)
273 PRK10762 D-ribose transporter 100.0 2E-28 4.2E-33 283.1 16.1 153 590-761 4-182 (501)
274 PRK15439 autoinducer 2 ABC tra 100.0 3.4E-28 7.3E-33 281.6 17.8 154 590-762 11-182 (510)
275 PRK09473 oppD oligopeptide tra 100.0 4.3E-28 9.3E-33 265.0 16.8 161 589-761 11-202 (330)
276 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2E-28 4.3E-33 253.9 13.4 152 591-761 23-183 (224)
277 PRK11288 araG L-arabinose tran 100.0 3.3E-28 7.3E-33 281.2 16.6 153 590-761 4-181 (501)
278 PRK13546 teichoic acids export 100.0 7.2E-28 1.6E-32 255.5 17.5 161 589-762 3-185 (264)
279 TIGR02633 xylG D-xylose ABC tr 100.0 3.2E-28 6.9E-33 281.4 16.1 168 591-777 2-199 (500)
280 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-28 4.1E-33 286.3 14.1 176 590-777 4-216 (552)
281 PF00005 ABC_tran: ABC transpo 100.0 1.2E-28 2.7E-33 235.1 10.0 123 612-749 1-137 (137)
282 PRK09580 sufC cysteine desulfu 100.0 5.3E-28 1.2E-32 254.3 15.5 154 591-761 2-186 (248)
283 PRK11819 putative ABC transpor 100.0 4E-28 8.6E-33 283.7 15.9 176 590-777 6-218 (556)
284 PRK09700 D-allose transporter 100.0 4.1E-28 8.8E-33 281.1 15.7 153 590-761 5-186 (510)
285 cd03214 ABC_Iron-Siderophores_ 100.0 3.5E-28 7.6E-33 243.6 12.8 145 592-769 1-145 (180)
286 cd03267 ABC_NatA_like Similar 100.0 6E-28 1.3E-32 252.3 14.7 140 609-761 34-194 (236)
287 TIGR02770 nickel_nikD nickel i 100.0 3.1E-28 6.7E-33 253.4 12.2 145 612-767 2-171 (230)
288 cd03217 ABC_FeS_Assembly ABC-t 100.0 1E-27 2.2E-32 244.3 15.0 133 591-767 1-150 (200)
289 cd03216 ABC_Carb_Monos_I This 99.9 1E-27 2.2E-32 236.4 14.1 123 591-761 1-123 (163)
290 TIGR03269 met_CoM_red_A2 methy 99.9 8.5E-28 1.8E-32 279.1 15.7 167 591-777 1-227 (520)
291 PRK10261 glutathione transport 99.9 9E-28 1.9E-32 283.9 16.0 176 589-777 11-227 (623)
292 PRK10261 glutathione transport 99.9 1.2E-27 2.6E-32 282.8 16.3 175 589-777 312-522 (623)
293 COG0410 LivF ABC-type branched 99.9 1.2E-27 2.5E-32 240.3 13.6 160 590-762 3-178 (237)
294 PRK15064 ABC transporter ATP-b 99.9 1.3E-27 2.9E-32 278.0 16.2 167 591-777 2-210 (530)
295 PRK10982 galactose/methyl gala 99.9 2E-27 4.4E-32 274.1 17.3 151 593-762 1-176 (491)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.2E-27 2.6E-32 231.1 12.7 123 591-777 1-125 (144)
297 PRK13545 tagH teichoic acids e 99.9 3.2E-27 7E-32 266.2 17.3 160 590-766 21-188 (549)
298 TIGR03771 anch_rpt_ABC anchore 99.9 1.5E-27 3.3E-32 247.1 13.6 133 618-762 1-155 (223)
299 PLN03211 ABC transporter G-25; 99.9 2.1E-27 4.5E-32 280.9 16.4 144 609-761 81-247 (659)
300 PRK10938 putative molybdenum t 99.9 2.7E-27 5.8E-32 273.1 16.3 152 591-762 4-177 (490)
301 PRK15064 ABC transporter ATP-b 99.9 3.7E-27 8.1E-32 274.3 17.5 169 589-777 318-493 (530)
302 TIGR03269 met_CoM_red_A2 methy 99.9 2.2E-27 4.8E-32 275.7 14.8 178 590-777 279-486 (520)
303 PRK03695 vitamin B12-transport 99.9 5.1E-27 1.1E-31 247.1 16.1 142 611-767 11-179 (248)
304 PRK15134 microcin C ABC transp 99.9 5.7E-27 1.2E-31 272.7 16.2 175 590-777 5-215 (529)
305 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.7E-27 1.7E-31 272.8 17.2 169 589-777 321-498 (552)
306 PRK15177 Vi polysaccharide exp 99.9 1.7E-27 3.8E-32 244.9 10.3 154 611-777 2-161 (213)
307 PRK15134 microcin C ABC transp 99.9 5.6E-27 1.2E-31 272.8 15.8 173 590-777 275-484 (529)
308 PRK13549 xylose transporter AT 99.9 4.4E-27 9.5E-32 272.2 14.3 172 590-777 259-463 (506)
309 COG4181 Predicted ABC-type tra 99.9 5.3E-27 1.1E-31 223.6 12.1 160 590-764 6-190 (228)
310 PRK11819 putative ABC transpor 99.9 9.2E-27 2E-31 272.3 16.9 155 589-761 323-486 (556)
311 PRK09700 D-allose transporter 99.9 5.4E-27 1.2E-31 271.8 14.0 152 590-761 265-450 (510)
312 TIGR00956 3a01205 Pleiotropic 99.9 1.5E-26 3.2E-31 293.1 18.8 161 590-761 759-943 (1394)
313 TIGR02633 xylG D-xylose ABC tr 99.9 5.4E-27 1.2E-31 271.2 13.4 157 590-761 257-444 (500)
314 PRK13409 putative ATPase RIL; 99.9 1.4E-26 3.1E-31 270.7 16.8 168 589-777 339-512 (590)
315 cd03222 ABC_RNaseL_inhibitor T 99.9 1.7E-26 3.6E-31 230.1 13.1 123 594-777 4-130 (177)
316 PRK11288 araG L-arabinose tran 99.9 2.1E-26 4.5E-31 266.3 14.7 165 590-777 257-454 (501)
317 KOG0064 Peroxisomal long-chain 99.9 6.7E-23 1.5E-27 223.6 40.5 418 335-763 174-655 (728)
318 PRK10938 putative molybdenum t 99.9 2.1E-26 4.4E-31 265.7 14.1 170 589-777 259-460 (490)
319 COG4148 ModC ABC-type molybdat 99.9 1.8E-26 3.9E-31 235.5 11.4 134 615-760 16-168 (352)
320 COG4175 ProV ABC-type proline/ 99.9 1.6E-26 3.5E-31 239.5 11.1 153 612-777 44-223 (386)
321 cd03236 ABC_RNaseL_inhibitor_d 99.9 3.4E-26 7.4E-31 241.4 13.7 149 594-761 4-180 (255)
322 PLN03073 ABC transporter F fam 99.9 5.4E-26 1.2E-30 270.4 17.1 156 589-762 507-669 (718)
323 PRK10535 macrolide transporter 99.9 5.9E-26 1.3E-30 269.4 16.7 157 590-761 4-185 (648)
324 PRK11147 ABC transporter ATPas 99.9 8.4E-26 1.8E-30 267.9 17.6 155 588-760 317-480 (635)
325 TIGR01257 rim_protein retinal- 99.9 7.6E-26 1.6E-30 287.5 17.1 156 589-761 927-1102(2272)
326 COG1123 ATPase components of v 99.9 1.2E-25 2.5E-30 252.7 16.1 160 589-761 279-470 (539)
327 COG4559 ABC-type hemin transpo 99.9 8E-26 1.7E-30 222.8 12.9 156 591-761 2-182 (259)
328 PRK10762 D-ribose transporter 99.9 4.7E-26 1E-30 263.3 13.1 164 590-777 257-453 (501)
329 TIGR01187 potA spermidine/putr 99.9 4.4E-26 9.4E-31 249.1 11.9 137 628-777 1-159 (325)
330 PRK10636 putative ABC transpor 99.9 1.6E-25 3.4E-30 265.2 17.3 169 588-777 310-485 (638)
331 PRK10636 putative ABC transpor 99.9 2E-25 4.4E-30 264.2 16.9 167 591-777 2-204 (638)
332 COG1137 YhbG ABC-type (unclass 99.9 2.4E-26 5.1E-31 224.7 6.1 157 590-759 4-178 (243)
333 COG4136 ABC-type uncharacteriz 99.9 1.7E-25 3.7E-30 208.9 11.4 149 591-758 3-172 (213)
334 PRK10982 galactose/methyl gala 99.9 2E-25 4.2E-30 257.6 12.5 158 589-767 249-437 (491)
335 TIGR01257 rim_protein retinal- 99.9 6.1E-25 1.3E-29 279.3 17.3 161 589-767 1936-2116(2272)
336 PLN03140 ABC transporter G fam 99.9 1.1E-24 2.4E-29 275.4 19.1 163 590-761 867-1060(1470)
337 COG4598 HisP ABC-type histidin 99.9 3.8E-25 8.2E-30 212.3 11.0 154 589-761 5-193 (256)
338 cd00267 ABC_ATPase ABC (ATP-bi 99.9 8E-25 1.7E-29 214.3 13.2 122 593-777 2-138 (157)
339 COG1123 ATPase components of v 99.9 1.4E-24 3.1E-29 243.9 17.0 159 590-761 5-195 (539)
340 COG4608 AppF ABC-type oligopep 99.9 8.1E-25 1.7E-29 226.0 13.8 142 590-761 4-150 (268)
341 PRK11147 ABC transporter ATPas 99.9 8.1E-25 1.8E-29 259.5 15.8 174 590-777 3-211 (635)
342 COG4555 NatA ABC-type Na+ tran 99.9 5.9E-25 1.3E-29 215.1 11.3 152 591-760 2-173 (245)
343 PRK15439 autoinducer 2 ABC tra 99.9 5.5E-25 1.2E-29 254.8 12.9 149 590-761 268-444 (510)
344 cd03238 ABC_UvrA The excision 99.9 1.9E-24 4E-29 215.2 13.6 119 608-767 7-135 (176)
345 COG4161 ArtP ABC-type arginine 99.9 1E-24 2.2E-29 205.9 10.9 153 590-761 2-182 (242)
346 PRK13409 putative ATPase RIL; 99.9 7E-25 1.5E-29 256.4 11.8 146 595-761 78-253 (590)
347 COG1129 MglA ABC-type sugar tr 99.9 5.4E-24 1.2E-28 237.8 17.7 154 589-761 7-186 (500)
348 COG0444 DppD ABC-type dipeptid 99.9 6E-24 1.3E-28 223.9 13.8 156 591-761 2-194 (316)
349 COG0488 Uup ATPase components 99.9 1.5E-23 3.3E-28 239.8 16.7 160 590-761 3-194 (530)
350 COG4172 ABC-type uncharacteriz 99.9 3.7E-23 8.1E-28 220.2 17.7 160 588-761 274-467 (534)
351 TIGR00956 3a01205 Pleiotropic 99.9 1.7E-23 3.6E-28 265.5 14.3 149 609-767 74-255 (1394)
352 COG3845 ABC-type uncharacteriz 99.9 4E-23 8.7E-28 226.4 14.9 154 589-761 3-181 (501)
353 KOG0061 Transporter, ABC super 99.9 5E-23 1.1E-27 241.4 15.8 171 589-774 24-219 (613)
354 COG1119 ModF ABC-type molybden 99.9 1.9E-23 4.1E-28 211.6 10.5 155 588-761 29-212 (257)
355 COG0411 LivG ABC-type branched 99.9 2.6E-23 5.7E-28 210.5 10.8 152 591-761 5-190 (250)
356 PLN03140 ABC transporter G fam 99.9 3.3E-23 7.2E-28 262.1 13.4 156 609-767 178-382 (1470)
357 COG1101 PhnK ABC-type uncharac 99.9 3E-23 6.6E-28 205.1 10.2 151 608-762 18-190 (263)
358 COG4604 CeuD ABC-type enteroch 99.9 4.3E-23 9.4E-28 201.3 8.3 152 591-761 2-176 (252)
359 PF00664 ABC_membrane: ABC tra 99.9 6.2E-19 1.3E-23 183.5 38.4 267 278-546 2-275 (275)
360 PLN03073 ABC transporter F fam 99.9 5.6E-22 1.2E-26 236.2 16.2 160 589-761 176-385 (718)
361 COG4133 CcmA ABC-type transpor 99.9 1.5E-22 3.2E-27 196.9 8.7 142 609-764 15-173 (209)
362 COG0488 Uup ATPase components 99.9 5E-21 1.1E-25 219.1 21.1 158 587-761 318-480 (530)
363 COG4778 PhnL ABC-type phosphon 99.8 1E-21 2.2E-26 187.3 7.2 159 591-761 5-193 (235)
364 COG4167 SapF ABC-type antimicr 99.8 4.5E-21 9.7E-26 184.8 11.1 140 611-762 28-191 (267)
365 cd03278 ABC_SMC_barmotin Barmo 99.8 3E-21 6.5E-26 196.2 8.7 122 615-761 15-158 (197)
366 COG1134 TagH ABC-type polysacc 99.8 1.4E-20 3.1E-25 191.0 11.4 136 609-757 40-184 (249)
367 cd03270 ABC_UvrA_I The excisio 99.8 3.9E-20 8.4E-25 192.2 13.3 139 609-762 8-181 (226)
368 cd03271 ABC_UvrA_II The excisi 99.8 2.3E-20 5E-25 196.7 11.5 145 609-767 8-218 (261)
369 COG4172 ABC-type uncharacteriz 99.8 2.4E-19 5.2E-24 191.3 14.8 157 590-761 6-198 (534)
370 COG4152 ABC-type uncharacteriz 99.8 1.4E-19 3.1E-24 182.2 11.7 155 590-759 2-169 (300)
371 cd03272 ABC_SMC3_euk Eukaryoti 99.8 4.5E-20 9.7E-25 193.6 8.3 139 623-762 23-204 (243)
372 KOG0927 Predicted transporter 99.8 1.5E-19 3.3E-24 199.2 9.5 156 588-760 387-549 (614)
373 COG4107 PhnK ABC-type phosphon 99.8 8.4E-19 1.8E-23 167.9 13.3 167 590-771 6-201 (258)
374 COG4674 Uncharacterized ABC-ty 99.8 2.4E-19 5.2E-24 175.0 9.5 150 589-757 4-185 (249)
375 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.9E-19 6.2E-24 184.0 9.2 160 590-777 5-191 (213)
376 cd03240 ABC_Rad50 The catalyti 99.8 4.9E-19 1.1E-23 181.0 10.1 121 616-761 16-163 (204)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.8 2.8E-19 6.1E-24 188.7 8.2 139 623-761 25-211 (251)
378 cd03275 ABC_SMC1_euk Eukaryoti 99.8 5E-19 1.1E-23 186.3 7.1 151 625-777 24-217 (247)
379 COG0396 sufC Cysteine desulfur 99.7 2.9E-17 6.3E-22 165.0 16.2 157 591-766 4-189 (251)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.7 3.7E-18 8E-23 175.5 3.7 148 591-761 6-172 (212)
381 KOG0065 Pleiotropic drug resis 99.7 1.9E-17 4.2E-22 198.9 8.9 144 608-760 803-970 (1391)
382 cd03239 ABC_SMC_head The struc 99.7 3.4E-17 7.3E-22 163.8 8.2 119 622-768 21-145 (178)
383 KOG0059 Lipid exporter ABCA1 a 99.7 8.3E-17 1.8E-21 196.9 12.7 162 589-769 563-746 (885)
384 COG4586 ABC-type uncharacteriz 99.7 2.9E-17 6.3E-22 168.1 6.8 136 610-760 38-196 (325)
385 PRK00349 uvrA excinuclease ABC 99.7 1.4E-16 3E-21 193.1 10.6 54 713-767 823-879 (943)
386 KOG0066 eIF2-interacting prote 99.6 5.6E-16 1.2E-20 166.1 11.9 153 589-760 585-744 (807)
387 COG1245 Predicted ATPase, RNas 99.6 7.5E-16 1.6E-20 166.9 12.6 135 619-767 363-501 (591)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.6 7E-16 1.5E-20 157.0 11.0 129 615-768 14-160 (198)
389 PRK00635 excinuclease ABC subu 99.6 1.2E-15 2.6E-20 192.4 12.9 53 709-761 797-853 (1809)
390 KOG0927 Predicted transporter 99.6 1.3E-15 2.8E-20 168.5 11.4 160 589-761 74-262 (614)
391 KOG0062 ATPase component of AB 99.6 1.1E-15 2.4E-20 168.1 10.2 152 589-761 79-239 (582)
392 COG1129 MglA ABC-type sugar tr 99.6 3.2E-15 6.9E-20 167.8 11.6 143 611-761 274-442 (500)
393 TIGR00630 uvra excinuclease AB 99.6 8.3E-15 1.8E-19 177.5 12.2 49 713-761 821-872 (924)
394 KOG0062 ATPase component of AB 99.6 5.9E-15 1.3E-19 162.4 8.5 155 588-760 360-522 (582)
395 cd03280 ABC_MutS2 MutS2 homolo 99.5 5.5E-14 1.2E-18 143.3 8.0 110 615-767 19-137 (200)
396 KOG2355 Predicted ABC-type tra 99.5 1.4E-13 3.1E-18 135.6 10.1 155 587-761 10-188 (291)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.5 5.1E-14 1.1E-18 144.9 7.0 139 615-762 16-172 (213)
398 COG3845 ABC-type uncharacteriz 99.5 7.9E-13 1.7E-17 146.0 15.6 167 587-764 254-447 (501)
399 COG1245 Predicted ATPase, RNas 99.4 1.3E-13 2.7E-18 149.9 6.2 135 620-769 97-261 (591)
400 COG4138 BtuD ABC-type cobalami 99.4 9.1E-14 2E-18 133.8 4.2 134 612-760 15-172 (248)
401 cd03227 ABC_Class2 ABC-type Cl 99.4 2E-13 4.4E-18 134.5 6.5 116 617-777 15-139 (162)
402 cd03242 ABC_RecF RecF is a rec 99.4 1.3E-12 2.8E-17 139.6 12.7 57 706-762 165-234 (270)
403 COG2401 ABC-type ATPase fused 99.4 8.2E-13 1.8E-17 141.9 9.1 142 609-762 396-549 (593)
404 cd01128 rho_factor Transcripti 99.4 3.7E-13 8.1E-18 141.2 5.0 135 618-758 11-173 (249)
405 KOG0065 Pleiotropic drug resis 99.4 1E-12 2.2E-17 158.8 9.0 144 609-761 128-301 (1391)
406 cd00820 PEPCK_HprK Phosphoenol 99.4 8.8E-13 1.9E-17 119.7 6.2 62 610-681 3-77 (107)
407 cd03241 ABC_RecN RecN ATPase i 99.4 2.1E-12 4.6E-17 138.3 10.1 42 720-761 170-215 (276)
408 cd03283 ABC_MutS-like MutS-lik 99.3 1.9E-12 4E-17 132.0 6.9 119 609-767 14-134 (199)
409 TIGR00606 rad50 rad50. This fa 99.2 2E-11 4.4E-16 155.9 8.9 91 666-761 1147-1246(1311)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.2 2E-11 4.3E-16 126.6 6.3 111 609-759 17-133 (222)
411 cd03243 ABC_MutS_homologs The 99.2 4.1E-11 8.9E-16 122.4 7.9 111 616-765 22-135 (202)
412 PRK00635 excinuclease ABC subu 99.1 2E-10 4.4E-15 145.8 13.2 52 709-761 1689-1743(1809)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.1 2.8E-10 6.1E-15 116.3 9.5 121 609-768 16-138 (204)
414 PTZ00132 GTP-binding nuclear p 99.1 1.2E-10 2.6E-15 119.9 5.9 38 725-762 157-199 (215)
415 COG0178 UvrA Excinuclease ATPa 99.1 1.4E-09 3E-14 126.2 14.6 49 713-761 815-866 (935)
416 PF02463 SMC_N: RecF/RecN/SMC 99.0 4.6E-10 1E-14 116.0 8.7 127 617-761 19-181 (220)
417 cd03281 ABC_MSH5_euk MutS5 hom 99.0 1.2E-09 2.7E-14 112.5 10.3 119 617-777 21-152 (213)
418 KOG0063 RNAse L inhibitor, ABC 99.0 1.4E-09 3E-14 117.9 9.5 143 596-756 341-492 (592)
419 TIGR01069 mutS2 MutS2 family p 98.9 2.8E-09 6.2E-14 128.4 10.5 116 616-767 314-431 (771)
420 COG4170 SapD ABC-type antimicr 98.9 3.9E-09 8.5E-14 104.7 8.4 139 610-761 21-199 (330)
421 smart00534 MUTSac ATPase domai 98.9 1.5E-09 3.3E-14 109.4 5.3 103 626-769 2-109 (185)
422 KOG0066 eIF2-interacting prote 98.9 4.4E-09 9.6E-14 113.8 8.9 169 590-771 264-462 (807)
423 cd03284 ABC_MutS1 MutS1 homolo 98.9 4E-09 8.6E-14 109.0 8.0 101 609-755 18-129 (216)
424 cd03287 ABC_MSH3_euk MutS3 hom 98.8 1.4E-08 3E-13 105.2 7.4 122 609-770 18-142 (222)
425 PRK00409 recombination and DNA 98.7 1.1E-07 2.4E-12 115.2 13.3 115 617-767 320-436 (782)
426 TIGR00101 ureG urease accessor 98.7 1.1E-08 2.5E-13 104.2 3.4 100 625-725 3-108 (199)
427 TIGR00630 uvra excinuclease AB 98.6 4.3E-08 9.3E-13 119.7 7.3 48 714-761 481-530 (924)
428 KOG0063 RNAse L inhibitor, ABC 98.6 1.4E-08 3.1E-13 110.1 2.3 123 621-757 98-250 (592)
429 PRK00349 uvrA excinuclease ABC 98.6 4.7E-08 1E-12 119.6 6.5 48 714-761 483-532 (943)
430 PRK12369 putative transporter; 98.6 0.00073 1.6E-08 74.1 38.5 223 338-572 83-321 (326)
431 PHA02562 46 endonuclease subun 98.6 2.5E-08 5.5E-13 117.4 3.4 71 705-777 447-535 (562)
432 TIGR03238 dnd_assoc_3 dnd syst 98.5 6.9E-08 1.5E-12 108.3 5.4 48 610-660 20-67 (504)
433 PRK11098 microcin B17 transpor 98.5 0.0015 3.2E-08 73.4 39.2 220 339-572 159-395 (409)
434 smart00382 AAA ATPases associa 98.5 1E-06 2.3E-11 82.0 11.7 100 622-761 1-101 (148)
435 TIGR02858 spore_III_AA stage I 98.5 1.4E-07 3.1E-12 100.3 5.8 36 624-660 112-147 (270)
436 PRK08533 flagellar accessory p 98.4 1.6E-06 3.5E-11 90.5 10.6 113 619-760 20-143 (230)
437 PRK13695 putative NTPase; Prov 98.4 3.9E-07 8.5E-12 90.8 5.6 111 625-754 2-114 (174)
438 TIGR00767 rho transcription te 98.4 1.1E-06 2.3E-11 97.4 9.0 100 556-668 100-209 (415)
439 PF06472 ABC_membrane_2: ABC t 98.3 0.0021 4.5E-08 69.3 33.0 201 278-482 30-237 (281)
440 cd02023 UMPK Uridine monophosp 98.3 4.9E-07 1.1E-11 91.9 4.5 108 625-755 1-115 (198)
441 PF13748 ABC_membrane_3: ABC t 98.3 0.003 6.5E-08 65.1 31.5 178 266-456 1-179 (237)
442 cd01131 PilT Pilus retraction 98.3 2E-06 4.3E-11 87.7 8.4 91 625-762 3-95 (198)
443 PRK06793 fliI flagellum-specif 98.3 2.3E-06 5E-11 96.3 8.7 112 611-756 146-264 (432)
444 TIGR02788 VirB11 P-type DNA tr 98.2 1.1E-06 2.4E-11 95.7 5.8 41 616-657 137-177 (308)
445 PRK01889 GTPase RsgA; Reviewed 98.2 1.6E-06 3.5E-11 96.2 6.7 120 615-738 187-321 (356)
446 cd01130 VirB11-like_ATPase Typ 98.2 1.2E-06 2.6E-11 88.3 4.5 44 615-659 17-60 (186)
447 TIGR01420 pilT_fam pilus retra 98.2 2.6E-06 5.7E-11 94.2 6.9 101 620-766 119-220 (343)
448 PRK10869 recombination and rep 98.2 1.3E-06 2.8E-11 102.4 4.6 57 720-777 430-491 (553)
449 cd01120 RecA-like_NTPases RecA 98.1 7.8E-06 1.7E-10 79.1 8.7 101 626-755 2-102 (165)
450 cd01124 KaiC KaiC is a circadi 98.1 9.2E-06 2E-10 81.3 9.4 101 626-752 2-109 (187)
451 TIGR00634 recN DNA repair prot 98.1 1.6E-06 3.5E-11 102.1 4.4 58 719-777 439-501 (563)
452 cd03286 ABC_MSH6_euk MutS6 hom 98.1 7.2E-06 1.6E-10 84.8 7.7 122 609-769 17-140 (218)
453 PRK06995 flhF flagellar biosyn 98.1 2.7E-06 5.9E-11 97.0 4.7 133 617-760 250-388 (484)
454 TIGR00235 udk uridine kinase. 98.0 6E-06 1.3E-10 84.7 4.4 44 621-673 4-47 (207)
455 PRK01156 chromosome segregatio 98.0 7.2E-06 1.6E-10 102.1 5.9 60 717-777 798-868 (895)
456 PRK00300 gmk guanylate kinase; 97.9 3.3E-06 7.1E-11 86.2 1.6 59 621-683 3-83 (205)
457 PRK00064 recF recombination pr 97.9 9.4E-06 2E-10 90.5 5.2 44 719-762 272-324 (361)
458 PRK05480 uridine/cytidine kina 97.9 2.1E-05 4.7E-10 80.6 6.9 112 621-755 4-122 (209)
459 PF13304 AAA_21: AAA domain; P 97.8 1.6E-05 3.4E-10 81.9 4.8 42 720-761 236-280 (303)
460 PRK06067 flagellar accessory p 97.8 6.1E-05 1.3E-09 78.7 9.2 109 619-753 21-135 (234)
461 TIGR02524 dot_icm_DotB Dot/Icm 97.8 2.6E-05 5.6E-10 86.6 6.3 77 621-697 132-234 (358)
462 TIGR00611 recf recF protein. A 97.8 1.7E-05 3.7E-10 88.4 4.6 56 707-762 258-326 (365)
463 PRK06002 fliI flagellum-specif 97.8 4.8E-05 1E-09 85.9 8.0 62 589-658 138-199 (450)
464 TIGR02168 SMC_prok_B chromosom 97.8 1.3E-05 2.8E-10 102.4 3.9 61 716-777 1085-1150(1179)
465 PRK10246 exonuclease subunit S 97.8 2.1E-05 4.5E-10 99.0 5.1 60 718-778 947-1016(1047)
466 PRK10733 hflB ATP-dependent me 97.8 1.4E-06 3E-11 104.0 -5.3 161 449-648 38-210 (644)
467 PRK03918 chromosome segregatio 97.8 2.3E-05 4.9E-10 97.5 5.1 58 719-777 787-852 (880)
468 cd01876 YihA_EngB The YihA (En 97.7 0.00011 2.4E-09 71.0 7.7 48 712-763 114-166 (170)
469 TIGR00618 sbcc exonuclease Sbc 97.6 4.3E-05 9.2E-10 96.6 5.1 44 718-761 948-1001(1042)
470 PRK15494 era GTPase Era; Provi 97.6 4.4E-05 9.4E-10 84.4 4.2 55 587-647 15-76 (339)
471 PRK00454 engB GTP-binding prot 97.6 0.0002 4.4E-09 72.0 8.7 52 713-769 140-194 (196)
472 PRK14079 recF recombination pr 97.6 5.8E-05 1.3E-09 83.7 5.1 42 720-761 263-313 (349)
473 cd01125 repA Hexameric Replica 97.6 9.1E-05 2E-09 77.7 6.1 22 623-644 1-22 (239)
474 PF13555 AAA_29: P-loop contai 97.5 8.6E-05 1.9E-09 60.8 4.0 33 615-647 14-47 (62)
475 PRK07196 fliI flagellum-specif 97.5 0.0001 2.3E-09 83.2 5.6 69 610-681 144-235 (434)
476 TIGR02169 SMC_prok_A chromosom 97.5 5.8E-05 1.3E-09 96.5 3.8 45 717-761 1071-1119(1164)
477 cd02025 PanK Pantothenate kina 97.5 0.00015 3.3E-09 75.2 6.0 70 625-699 1-76 (220)
478 PRK13830 conjugal transfer pro 97.4 0.00053 1.2E-08 84.3 10.4 40 616-655 449-488 (818)
479 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00063 1.4E-08 72.6 9.6 96 621-765 78-173 (264)
480 TIGR02322 phosphon_PhnN phosph 97.4 0.0001 2.2E-09 73.6 3.3 28 623-650 1-28 (179)
481 PRK00889 adenylylsulfate kinas 97.3 0.00089 1.9E-08 66.6 9.2 106 621-747 2-109 (175)
482 PRK07721 fliI flagellum-specif 97.3 0.0002 4.4E-09 81.3 4.8 90 610-704 147-244 (438)
483 TIGR02680 conserved hypothetic 97.3 0.0003 6.4E-09 90.7 6.7 45 717-761 1244-1300(1353)
484 cd00009 AAA The AAA+ (ATPases 97.3 0.00083 1.8E-08 63.0 8.1 32 621-652 17-48 (151)
485 PF09818 ABC_ATPase: Predicted 97.3 0.00054 1.2E-08 76.4 7.5 125 618-764 240-366 (448)
486 TIGR02533 type_II_gspE general 97.3 0.0012 2.6E-08 76.4 10.5 95 622-766 241-336 (486)
487 COG3910 Predicted ATPase [Gene 97.3 0.0011 2.3E-08 65.9 8.5 134 618-774 33-177 (233)
488 PF13558 SbcCD_C: Putative exo 97.3 0.00036 7.9E-09 61.9 4.8 54 708-761 20-86 (90)
489 PRK10522 multidrug transporter 97.2 0.73 1.6E-05 54.4 37.6 21 342-362 76-96 (547)
490 cd04104 p47_IIGP_like p47 (47- 97.2 0.00054 1.2E-08 69.7 6.6 33 625-658 3-35 (197)
491 PRK09270 nucleoside triphospha 97.2 0.00049 1.1E-08 71.7 6.4 35 621-656 31-65 (229)
492 TIGR00455 apsK adenylylsulfate 97.2 0.0018 4E-08 64.9 10.1 108 620-747 15-125 (184)
493 TIGR00554 panK_bact pantothena 97.2 0.00053 1.1E-08 73.9 6.5 66 624-696 63-136 (290)
494 PRK05922 type III secretion sy 97.2 0.00019 4.1E-09 81.0 3.2 42 617-659 151-192 (434)
495 PRK10078 ribose 1,5-bisphospho 97.1 0.00032 6.8E-09 70.7 3.6 28 622-649 1-28 (186)
496 PRK08149 ATP synthase SpaL; Va 97.1 0.0004 8.7E-09 78.4 4.6 39 610-650 140-178 (428)
497 PRK09825 idnK D-gluconate kina 97.1 0.00033 7.1E-09 70.1 3.4 28 622-649 2-29 (176)
498 PRK12727 flagellar biosynthesi 97.1 0.001 2.2E-08 76.5 7.7 124 621-754 348-475 (559)
499 PRK14722 flhF flagellar biosyn 97.1 0.00074 1.6E-08 75.1 6.5 62 610-679 125-186 (374)
500 PLN02796 D-glycerate 3-kinase 97.1 0.00017 3.7E-09 78.8 1.4 48 610-659 80-138 (347)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.8e-130 Score=1184.11 Aligned_cols=569 Identities=39% Similarity=0.696 Sum_probs=539.8
Q ss_pred CCCcccCCH--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC---CCCChhHHHHHHHHH
Q 004004 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (779)
Q Consensus 201 ~~p~~~a~~--~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~a~~~~~~f~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (779)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 999999999999999999999999999999999999999999999998853 467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (779)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~ 355 (779)
++++.+++..+...+.+++|.+++.+++++++++ ...+.||.++++++++.++++++.++|+|..+++|+|+|+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~--~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR--LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC--cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999999999998874 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCC---ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004004 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (779)
Q Consensus 356 ~iy~K~L~ls~~~~---~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~ 432 (779)
+||+|.|+++..++ ++|+|+|+|++|++|+.++..++|.+|.+|+|+++++++||..+| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999998775 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (779)
Q Consensus 433 ~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv 512 (779)
.+++++++++|++.|+.+|+|++.|+|+|+|||+||+||||+.|.+++++.|++|+++++|..+..+++.+.++.+|.++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC-CCCCCCCcc
Q 004004 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE-PTSKASDVA 590 (779)
Q Consensus 513 ~~~~f~~~~-l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~-~~~~~~~~~ 590 (779)
++++|++|. ..++.+|+.++|+++++|++++.|+.++|..++.+.|++||++|+++||..+|.+++..+ .+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 678899999999999999999999999999999999999999999999999998765544 234445568
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI 670 (779)
|+++|++|+|++ +++.|+|+ ||||+||+|+++||||+|||||||||++||||+++.+| ++.++|++|||||+|||
T Consensus 519 i~i~~~sfsW~~---~~~~~tL~-dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG-~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 519 IEIKNGSFSWDS---ESPEPTLK-DINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG-SVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred EEEeeeeEecCC---CCCccccc-ceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccc-eEEEcCeEEEeccccHh
Confidence 999999999987 44567999 99999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 004004 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (779)
Q Consensus 671 ~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SA 750 (779)
|||||||||+||+|||++||++|+++|+|++|++.||+||+|+|||||+||||||||||+||||+|+|+||||||||+||
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 751 VDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 751 LDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
||+||++|||++||+|.|+ +-++-++|
T Consensus 674 VDahvg~~if~~ci~~~L~~KT~ILVTH 701 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLRGKTVILVTH 701 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhcCCEEEEEeC
Confidence 9999999999999999998 45555666
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.7e-106 Score=1022.60 Aligned_cols=748 Identities=25% Similarity=0.408 Sum_probs=587.5
Q ss_pred chhhchhhhhhHHHHHHHHHHHHHHHHHHHhccCCcchhh--hhhhhHHHHHHHHHHHHHHHHHHhHhhHhhhhhccccc
Q 004004 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFK 84 (779)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (779)
+...-.|.++.++..++++++....+....+.....+... ........+.++|+....+++...+... ....+...+
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISV-LNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccccccc
Confidence 3344467677777777776666555544422111111101 1112345556666666666664444332 222211122
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh-----cccccchhHHHHHHHH---HHHHHHHHHHHHHhhhccCCCCCCCcchhhh
Q 004004 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (779)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (779)
...+...+..+++..+++.+.+.+. +..++++.+++||++. .++.. .........+.. .. ....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~----~~~~ 179 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNL-VLSVKEYYSSFV---LY----LYIS 179 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHH-HHHHHHHHhccc---cc----eehh
Confidence 3344443555666665521111121 2235699999999988 54432 111122222100 00 0011
Q ss_pred hhHHHHHHHHHHHHHhcccccCCCCCCCCCCCCcc------cchhhhccCCCCcccCCHhHHHHHHhHHHHHHhhccCCC
Q 004004 157 DFVSLPLLVLLCFNATYACCCARDPSDLDIPLLRE------EDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKL 230 (779)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L 230 (779)
.+.......++++..+...... ..+.|...+ .++.+...+++||++||++||++|||+||++++|||++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L 255 (1622)
T PLN03130 180 EVAAQVLFGILLLVYFPNLDPY----PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPL 255 (1622)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC----cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 1111111122222222211110 011110000 001123457799999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004004 231 ELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH 309 (779)
Q Consensus 231 ~~~Dl~~l~~~~~a~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~ 309 (779)
+.+|+|+++++|+++.+.++|++.|+++.+ ++++++++++++|++.++..+++.++..++.+++|++++.+++++.+++
T Consensus 256 ~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~ 335 (1622)
T PLN03130 256 TEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE 335 (1622)
T ss_pred ChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998743 5689999999999999999999999999999999999999999987543
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CChHHHHHHHHHhHHHHH
Q 004004 310 DHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIG 386 (779)
Q Consensus 310 ~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~---~~sG~ivnlms~Dv~~i~ 386 (779)
..+.++.+++++++..++..++.+++++...+++.++|..++..+|+|.++++... .++|+++|+|++|++++.
T Consensus 336 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~ 412 (1622)
T PLN03130 336 ---PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQ 412 (1622)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 22446666666666666666777778888899999999999999999999998754 388999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 004004 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466 (779)
Q Consensus 387 ~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~ 466 (779)
+++..+|.+|..|++++++++++|..+| +++++++++++++++++..+.++.++.+++.++.+|+|.+.++|+++|||+
T Consensus 413 ~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~ 491 (1622)
T PLN03130 413 QICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDT 491 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 888888878888889999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Q 004004 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPI 546 (779)
Q Consensus 467 IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl 546 (779)
||+|+||+.|.+++++.|++|.+..++..+..+...++....|.++++++|++|.+.++.+|++.+|+++++++.+..|+
T Consensus 492 IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl 571 (1622)
T PLN03130 492 VKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPL 571 (1622)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887777777677787888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEE
Q 004004 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKV 626 (779)
Q Consensus 547 ~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~v 626 (779)
..+|..+..+.++++|++||++|++.+|..+... .+.......|+++|++|+|++ ..++++|+ |+||+|++|+++
T Consensus 572 ~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~~~nvsf~y~~---~~~~~vL~-~inl~i~~Ge~v 646 (1622)
T PLN03130 572 FMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAISIKNGYFSWDS---KAERPTLS-NINLDVPVGSLV 646 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceEEEeeEEEccC---CCCCceee-ceeEEecCCCEE
Confidence 9999999999999999999999998766432111 111112346999999999975 33467999 999999999999
Q ss_pred EEEcCCCCChhHHHHHHhccccCCC-CCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhh
Q 004004 627 AVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (779)
Q Consensus 627 aIvG~sGSGKSTLL~~iLGe~~~~~-G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~ 705 (779)
+||||||||||||+++|+||++|.+ | +|.++|++|||||+||||||||||||+||+|+|+++|++|+++|+|++|++.
T Consensus 647 aIvG~sGSGKSTLl~lLlG~~~~~~GG-~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~ 725 (1622)
T PLN03130 647 AIVGSTGEGKTSLISAMLGELPPRSDA-SVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDL 725 (1622)
T ss_pred EEECCCCCCHHHHHHHHHHhhccCCCc-eEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999 8 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 706 Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
||+||+|+|||+|.||||||||||+||||+|+|||||||||||||||+||+++||++|+.+.+++ -++.|+|
T Consensus 726 LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH 798 (1622)
T PLN03130 726 LPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTN 798 (1622)
T ss_pred CCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999987753 4455665
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-104 Score=1005.98 Aligned_cols=752 Identities=25% Similarity=0.408 Sum_probs=586.5
Q ss_pred hhhchhhhhhHHHHHHHHHHHHHHHHHHHhccCCcchhh--hhhhhHHHHHHHHHHHHHHHHHHhHhhHhhhhhcccccc
Q 004004 8 ELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRIVSFKS 85 (779)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (779)
...-.|.++..+..++++++....+....+++....+.. ........+.++|+....+++...+... ....+...+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 108 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISL-FDMDEETDLP 108 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccccc
Confidence 344456666677777776666555554432222211101 1112345556666666666554433322 1222111223
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh-----cccccchhHHHHHHHH---HHHHHHHHHHHHHhhhccCCCCCCCcchhhhh
Q 004004 86 VSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAVD 157 (779)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (779)
..+...+..+++..+++.+.+.+. +..++++.+++||++. .++.. .........+.. .. .....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~----~~~~~ 180 (1495)
T PLN03232 109 PFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDL-VLPLKNSINRTA---LY----LCISS 180 (1495)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHH-HHHHHHHHhccc---cc----eehhH
Confidence 334443555666666521111121 2235699999999988 54432 111111112100 00 00111
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCCCCCCc--ccchhhhccCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCC
Q 004004 158 FVSLPLLVLLCFNATYACCCARDPSDLDIPLLR--EEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHI 235 (779)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl 235 (779)
+...+...++++..+..............+..+ +.+..+.+.+.+||++||+|||++|||+||++++||+++|+.+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl 260 (1495)
T PLN03232 181 RCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDV 260 (1495)
T ss_pred HHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhc
Confidence 121222122222222211110000000000111 001123346789999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Q 004004 236 PPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSY 314 (779)
Q Consensus 236 ~~l~~~~~a~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~ 314 (779)
|+++++|+++.+.++|++.|+++.+ +++++++++++++++.++..+++.++..++.+++|++++.+++++.+++ ..
T Consensus 261 ~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~---~~ 337 (1495)
T PLN03232 261 WQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD---PA 337 (1495)
T ss_pred cCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cc
Confidence 9999999999999999999998754 5689999999999999999999999999999999999999999986543 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CChHHHHHHHHHhHHHHHHHHHH
Q 004004 315 HYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLY 391 (779)
Q Consensus 315 ~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~---~~sG~ivnlms~Dv~~i~~~~~~ 391 (779)
..++.+++++++..++..++.+++++...+++.++|..++..+|+|.++++... .++|+++|+|++|++++.+++..
T Consensus 338 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~ 417 (1495)
T PLN03232 338 WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQ 417 (1495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777888888888888888888899999999999999999999998753 37999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhc
Q 004004 392 IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS 471 (779)
Q Consensus 392 ~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~ 471 (779)
+|.+|..|++++++++++|..+| +++++++++++++++++..++++.++.+++.++.+|+|.+.++|+++|||+||+|+
T Consensus 418 l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~ 496 (1495)
T PLN03232 418 LHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYA 496 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 77888877777888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 472 WEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551 (779)
Q Consensus 472 wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~ 551 (779)
||+.+.+++++.|++|.+..++.....+...++....|.++.+++|+++.+.++++|++.+|+++++++.+..|+..+|.
T Consensus 497 ~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~ 576 (1495)
T PLN03232 497 WEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPN 576 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877777666666677777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcC
Q 004004 552 LISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGS 631 (779)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~ 631 (779)
.+..+.++++|++||++|++.+|..++.. .+.......|+++|++|+|++ ..++++|+ |+||+|++||+++||||
T Consensus 577 ~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~~~vsF~y~~---~~~~~vL~-~inl~i~~Ge~vaIvG~ 651 (1495)
T PLN03232 577 LLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISIKNGYFSWDS---KTSKPTLS-DINLEIPVGSLVAIVGG 651 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEEEeeEEEcCC---CCCCceee-eeEEEEcCCCEEEEECC
Confidence 99999999999999999998765422111 111112346999999999985 33468999 99999999999999999
Q ss_pred CCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCC
Q 004004 632 VGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDL 711 (779)
Q Consensus 632 sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~ 711 (779)
||||||||+++|+||++|.+|+.+.+++++|||+|+||||||||||||+||+++|+++|++|+++|+|++|++.||+||+
T Consensus 652 sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~ 731 (1495)
T PLN03232 652 TGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDL 731 (1495)
T ss_pred CCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCC
Confidence 99999999999999999999856678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 712 T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
|+|||+|.||||||||||+||||+|+|||||||||||||||+||+++|+++|+.+.+++ -++-|+|
T Consensus 732 T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH 798 (1495)
T PLN03232 732 TEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798 (1495)
T ss_pred ceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999886653 4445555
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-98 Score=952.39 Aligned_cols=570 Identities=34% Similarity=0.589 Sum_probs=517.8
Q ss_pred cCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc-------------------
Q 004004 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK------------------- 259 (779)
Q Consensus 199 ~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~a~~~~~~f~~~w~~~~------------------- 259 (779)
.+.+||++||++||++|||+||++++|||++|+.+|+|+++++++++.++++|++.|+++.
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 3568999999999999999999999999999999999999999999999999999998641
Q ss_pred -----------------------CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhH
Q 004004 260 -----------------------TDATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (779)
Q Consensus 260 -----------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~ 316 (779)
.+++++++++++++|+.++..++++++..++.+++|++++.+++++.++. .....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~~ 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPM--APDWQ 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cccch
Confidence 02367999999999999999999999999999999999999999987654 23345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChHHHHHHHHHhHHHHHHHHHHHH
Q 004004 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (779)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~---~sG~ivnlms~Dv~~i~~~~~~~~ 393 (779)
||.+++++++..++.+++.++|.+...++++++|.+++..+|+|+++++...+ ++|+++|+|++|++++.++...+|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999987543 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchH
Q 004004 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (779)
Q Consensus 394 ~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE 473 (779)
.+|..|++++++++++|..+| +++++++++++++++++..++++.+++++++++.+|+|++.++|+++|||+||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 8888999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (779)
Q Consensus 474 ~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~--~~~Lt~g~vft~lal~~~l~~pl~~lp~ 551 (779)
+.|.+++++.|++|.+..++..+......+.....|.++.+++|++|.+. ++.++++.+|++++++++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888877777766778888888889988876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCC-CCC-CCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEE
Q 004004 552 LISMIAQTKVSLYRIQEFIKEDNQKKPITE-PTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVC 629 (779)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~-~~~-~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIv 629 (779)
.+..+.++++|++||++|++.+|.+++..+ ... ......|+++|++|+|++ .++++|+ |+||+|++|++++|+
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~l~-~isl~i~~G~~v~Iv 670 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR----DLPPTLN-GITFSIPEGALVAVV 670 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCC----CCCceee-eeEEEEcCCCEEEEE
Confidence 999999999999999999987654332111 111 111236999999999974 2357999 999999999999999
Q ss_pred cCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCC
Q 004004 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709 (779)
Q Consensus 630 G~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~G 709 (779)
||+|||||||+++|+|+++|.+| +|.++|++|||||+||+|++||||||+||.++|+++|++++++|++.+|++.+|+|
T Consensus 671 G~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g 749 (1522)
T TIGR00957 671 GQVGCGKSSLLSALLAEMDKVEG-HVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749 (1522)
T ss_pred CCCCCCHHHHHHHHhCCCccCCc-EEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCC
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH--hHHHHH-HHhHhcc
Q 004004 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART--FSLFHQ-LLFSINH 777 (779)
Q Consensus 710 d~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i--~g~L~~-~~~~~~~ 777 (779)
|+|++||+|.+|||||||||+||||+|++||||||||||||||++++++|++.|+ .+.+++ -++.|+|
T Consensus 750 ~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH 820 (1522)
T TIGR00957 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820 (1522)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999998 345443 3455555
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.4e-97 Score=938.83 Aligned_cols=568 Identities=26% Similarity=0.446 Sum_probs=516.2
Q ss_pred CCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc---CCCCChhHHHHHHHHHHH
Q 004004 201 ISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKSL 277 (779)
Q Consensus 201 ~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~a~~~~~~f~~~w~~~~---~~~~~l~~~l~~~~~~~~ 277 (779)
.+||++||++||++|||+||++++||+++|+.+|||+++++++++.+.++|++.|+++. .++++++++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999998753 256789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (779)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~i 357 (779)
+..+++.++..++.+++|++++.+++++.+.+. .....++.++++++++.++..++.+++.|...++++++|+++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854321 1234588888888889999999999999999999999999999999
Q ss_pred HHHHhcccCCC---CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004004 358 YKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTP 434 (779)
Q Consensus 358 y~K~L~ls~~~---~~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~ 434 (779)
|+|.++++... .++|+++|+|++|++++.+++..+|.+|..|+++++++++||..+| +++++++++++++++++.+
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999998653 3789999999999999999999999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 435 LANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSV 514 (779)
Q Consensus 435 ~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~ 514 (779)
++++..++++++++++|+|++.++|+++|||+||+|+||+.|.+++++.|+.|++..++..+......++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877777777888999999
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEE
Q 004004 515 ITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDI 593 (779)
Q Consensus 515 ~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~ 593 (779)
++|++|.+.++ ++++.+|+++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++.... .....|++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~----~~~~~i~~ 395 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN----LTTTEVEM 395 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc----CCCCceEE
Confidence 99999988754 789999999999999999985 7999999999999999999999988765432111 11235999
Q ss_pred eeeEEEecccc----------------cc------------CCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 594 EAGEYAWDARE----------------EN------------FKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 594 ~n~sFsw~~~~----------------~~------------~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+|++|+|+... .+ ..+++|+ |+||+|++|++++|+||+||||||||++|+|
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~-~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLK-NISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCccee-eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999996310 00 0146899 9999999999999999999999999999999
Q ss_pred cccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 646 e~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
+++|.+| +|.++|++|||+|+||+|++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+|.+|||||
T Consensus 475 ~~~~~~G-~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGq 553 (1490)
T TIGR01271 475 ELEPSEG-KIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQ 553 (1490)
T ss_pred CCCCCCc-eEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
||||+||||+|++||||||||||||||++++++|+++|+.+.+++ -++.|+|
T Consensus 554 kqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH 606 (1490)
T TIGR01271 554 RARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606 (1490)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 999999999999999999999999999999999999999876542 3344444
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.1e-86 Score=839.27 Aligned_cols=574 Identities=28% Similarity=0.445 Sum_probs=508.0
Q ss_pred cCCCCcccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHH----------HHhhc---------
Q 004004 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEES----------LRKQK--------- 259 (779)
Q Consensus 199 ~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~a~~~~~~f~~~----------w~~~~--------- 259 (779)
..+.||++|||+.++++.|++|++.+..|..|+.+|+|+-..+.++.++..++.+. |+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 45689999999999999999999999999999999999999988886665555432 32100
Q ss_pred ----C---------------------------------------------------------------------------
Q 004004 260 ----T--------------------------------------------------------------------------- 260 (779)
Q Consensus 260 ----~--------------------------------------------------------------------------- 260 (779)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred -------------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHH
Q 004004 261 -------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (779)
Q Consensus 261 -------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~ 327 (779)
+..++++++++++|+.++..++++++..++.+++|++++.+++++++++ .....|+.+++++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~--~~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN--ATWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHH
Confidence 0126899999999999999999999999999999999999999996544 2233577888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004004 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG-----PSSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (779)
Q Consensus 328 ~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~-----~~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i 402 (779)
.++.+++.+++++...+.+.++|.+|...+|+|.++++..+ .++|+++|+|++|++++.+++.++|.+|..|+++
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998643 2789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH
Q 004004 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (779)
Q Consensus 403 ~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~ 482 (779)
++++++||..+| +++++|+++++++++++.+++|++.++++++++++|+|++.++|+++|||+||++|||+.|.+++++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (779)
Q Consensus 483 ~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS 562 (779)
.|++|++.+++..+...+..++.+.+|.++.+++|++|.+.+++||++.+|+++++|++++.|+.++|..++.+.++.+|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCC----C--------C----------------------C-------------------------
Q 004004 563 LYRIQEFIKEDNQKKPIT----E--------P----------------------T------------------------- 583 (779)
Q Consensus 563 ~~RI~~fL~~~e~~~~~~----~--------~----------------------~------------------------- 583 (779)
++||++||+.+|...+.. + . +
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 999999998765211000 0 0 0
Q ss_pred CCCCCccEEEeeeEEEeccccc----------------------------------cCCCcccccCCcEEeeCCcEEEEE
Q 004004 584 SKASDVAIDIEAGEYAWDAREE----------------------------------NFKKPTIKLTDKMKIMKGSKVAVC 629 (779)
Q Consensus 584 ~~~~~~~I~~~n~sFsw~~~~~----------------------------------~~~~~~L~~~inl~I~~G~~vaIv 629 (779)
.......+.++|++|+|+..+. ..++++|+ |+||+|++|++++|+
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~-~isl~i~~G~~~~Ii 692 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLR-DVSVSVPRGKLTVVL 692 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEe-eeEEEECCCCEEEEE
Confidence 0000124667777777642100 01245799 999999999999999
Q ss_pred cCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCC
Q 004004 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG 709 (779)
Q Consensus 630 G~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~G 709 (779)
||+|||||||+++|+|+++|++| +|.+++++|||||+||+|++||+|||+||.++|+++|++++++|+|++|++.+|+|
T Consensus 693 G~nGsGKSTLL~~i~G~~~~~~G-~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g 771 (1560)
T PTZ00243 693 GATGSGKSTLLQSLLSQFEISEG-RVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGG 771 (1560)
T ss_pred CCCCCcHHHHHHHHhcCCCCCCc-EEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhcc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 710 d~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
|+|++||+|.+|||||||||+||||+|++||||||||||||||++++++++++|+.+.++. -++.|+|
T Consensus 772 ~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH 840 (1560)
T PTZ00243 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATH 840 (1560)
T ss_pred chHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999776642 3344444
No 7
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.3e-72 Score=649.51 Aligned_cols=499 Identities=16% Similarity=0.184 Sum_probs=378.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (779)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (779)
..+.+.+++.++...++.++..++..+.|++++.++|...... .... .+.+..++++..++..+......+...+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP--PVLY-LSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888899999999999999999999765432 1111 111111111222333333333334456677
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004004 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (779)
Q Consensus 347 ~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l 422 (779)
.++...++..+|+|.++++.. ..++|++++++++|++++++.+.. +..+....+.+++++++++. +.|..+++.+
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l 160 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 888888999999999999864 348999999999999999997753 34444444444444444433 2324444444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 423 FSTIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (779)
Q Consensus 423 ~~~ll~~~~~~~~-~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (779)
+.++++.++...+ .+..++..++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333233 333455566777888999999999999999999999999999988876655544444433333322
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 502 ~~~~~~~p--~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
........ ..+.++.++.+.+.++.+|+|.+.+++.+...+..|+..+++.+..+.+++++.+|+.++++.++..++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 22222211 2233445677778889999999999999999999999999999999999999999999999876532211
Q ss_pred CC---CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 580 TE---PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 580 ~~---~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
.. .+..+....|+++|++|+|++ ++++|+ |+||+|+|||++|||||||||||||+++|+|+++|++| +|.
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~-----~~~vL~-~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~ 393 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPG-----SPPVLD-GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQG-EVT 393 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCC-----CCceee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEE
Confidence 11 001112346999999999975 246999 99999999999999999999999999999999999999 999
Q ss_pred EcC------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 657 VHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 657 i~g------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
++| +++||||+|++|+|||||||.+|+| .++++++++++.|+++++++.||+|+||+|||+|.||||
T Consensus 394 i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 394 LDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred ECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 998 7999999999999999999999975 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH-HHHHhHhcc
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF-HQLLFSINH 777 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L-~~~~~~~~~ 777 (779)
||||||+||||+|+||+|+||||||||||++||+.|.+... ... ..-++.|+|
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItH 527 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEec
Confidence 99999999999999999999999999999999999987654 332 235556666
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.8e-72 Score=657.17 Aligned_cols=499 Identities=18% Similarity=0.234 Sum_probs=381.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (779)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (779)
+.++.+.+.+++.++...++.++..++..+.|++++.++|.+..++. . ....+.++.++++..++..+......+...
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI-P-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999997642210 1 111222333344444455555555555667
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l 419 (779)
+.+.++...++..+|+|.++++.. .+++|+++|++++|++++++++. .+..++...+..++++++++. ++|..++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l 167 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 888999999999999999999864 34899999999999999999874 455666555555555544442 3334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHH
Q 004004 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYL 495 (779)
Q Consensus 420 ~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~ 495 (779)
+.++++++.+.+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++ .++.+.+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566677888888888999999999999999999999999999999988887744 4444444333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSG---------AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRI 566 (779)
Q Consensus 496 ~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g---------~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI 566 (779)
.......+... .+. +.++.++++.+. +.+|.| .+++++.+...+..|+..++..+..+.+++++.+||
T Consensus 248 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 248 LSSAVLEFFAS-ISI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111 111 122233444333 445555 344555667778899999999999999999999999
Q ss_pred HHHhccccCCCCCCCCC-CCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 567 QEFIKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 567 ~~fL~~~e~~~~~~~~~-~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
.++++.++.++.....+ .......|+++|++|.|++ ++++|+ |+||+|+||+++|||||||||||||+++|+|
T Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~-----~~~vL~-~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 325 VTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD-----GKTLAG-PLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC-----CCeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99998765332111111 1112346999999987754 257999 9999999999999999999999999999999
Q ss_pred cccCCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCC
Q 004004 646 EIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDL 711 (779)
Q Consensus 646 e~~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~ 711 (779)
++ |++| +|.++| +|+||||+||||+|||||||++|+| +++++++++++.|+++++++.||+|++
T Consensus 399 ~~-p~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d 476 (588)
T PRK11174 399 FL-PYQG-SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD 476 (588)
T ss_pred CC-CCCc-EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence 99 8999 999998 5999999999999999999999975 899999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 712 T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|.|||+|.||||||||||+||||+|+||+|+||||||||||++|+++|.+ ++....+ +-++.|+|
T Consensus 477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItH 542 (588)
T PRK11174 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTH 542 (588)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999985 6666544 34456666
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-72 Score=635.53 Aligned_cols=500 Identities=22% Similarity=0.269 Sum_probs=392.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDH-SSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~-~~~~-~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (779)
++.+.+..|+.+..+.++.++........|.++.+++|.+.. .+.. ........++++.+...+...+....+ +
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~----~ 213 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL----Q 213 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 456677889999999999999999999999999999998876 2210 111122333333333333333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~---~~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l 419 (779)
..+.++-..++..+|++.++... ....+||++++++.|++.+.+.+. ++.+..-..++.+.++.+++.. -|-.++
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~-S~~Ltl 292 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL-SWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHH
Confidence 44444455555566666666542 344899999999999999999764 5777777778888777766542 224556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (779)
Q Consensus 420 ~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (779)
+.++.+++++.+...++++.++..++.+++..+-.+...|.+.+||+||+|+-|+.-.++.++.-+.-.+..+|-.....
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777788888889999999999999999999999999999999999999999976555544332222222222222211
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 004004 500 AIA--FLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (779)
Q Consensus 500 ~~~--~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (779)
... ..+......++++.+|.+++.++.+|.|.+.+++.+-..+..++..+...++.+.++..+.+|+.++++.++.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 111 111123346678889999999999999999999999999999999999999999999999999999999765433
Q ss_pred CCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 578 PITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 578 ~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
.... .|. ..++.|+|+||+|+||. .++.|+|+ |+||+|+|||.||+||||||||||+.++|+++|+|++| +|.
T Consensus 453 ~~G~~~p~-~~~G~IeF~~VsFaYP~---Rp~~~Vlk-~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG-~Il 526 (716)
T KOG0058|consen 453 LTGTLAPD-HLQGVIEFEDVSFAYPT---RPDVPVLK-NLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG-RIL 526 (716)
T ss_pred CCCccccc-cccceEEEEEeeeecCC---CCCchhhc-CceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEE
Confidence 2222 333 45678999999999998 56778999 99999999999999999999999999999999999999 999
Q ss_pred EcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 657 i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
+|| +||+|.|||-||++||+|||.||.+ .++|+++++.+.|+.+++|..||+|++|+|||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 999 4999999999999999999999986 68899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
|||||||||||||++||.|+||||+|||||+++|.. .++.+...+++ -+..|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l-Vq~aL~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYL-VQEALDRLMQGRTVLVIAH 661 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH-HHHHHHHhhcCCeEEEEeh
Confidence 999999999999999999999999999999999854 45555444333 2334444
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.9e-70 Score=639.68 Aligned_cols=503 Identities=22% Similarity=0.250 Sum_probs=414.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (779)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (779)
.+.++..+..+|+.+.-..+..++..++.++.|++.+.++|.+.... + ......+++++.+..+++.+......+..
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~--~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA--S-RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888998888899999999999999999999999887654 2 23345566667777777777666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHhhhHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRI-WLLPVQVFLALVILYKNLGAAP 417 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~-~~~pl~i~~~l~lL~~~lg~~~ 417 (779)
..++.|+...+...+|+|.+++|.. .|++||++++++ |.++|.+++.. +... ...++-++ .+++++..-+ ..
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i-~l~vm~~ys~-~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALI-FLAVMFLYSW-KL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence 7899999999999999999999964 579999999998 99999999853 2222 22333333 3333333333 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (779)
Q Consensus 418 ~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (779)
++++++.+++.+.+..++.+..++..++.++...++.+...|.++||++||..+-|+.+..++++.-.+..+...+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 77778888888888888899999999999999999999999999999999999999999999988766666655444444
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 004004 498 CSAIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (779)
Q Consensus 498 ~~~~~~~~~~~--p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (779)
........... -.-+.+++||++.++++.+|.|.++++..+.+.+..|+..+.+....+.+++++.+|+.++++.|.+
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 33332222221 2234567899999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCC-CCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCe
Q 004004 576 KKPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (779)
Q Consensus 576 ~~~~~-~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~ 654 (779)
++... ....+..++.|+++|++|+|+. + ++++|+ |+||+|++||++||||+||||||||+++|+|.|+|++| +
T Consensus 456 ~~~~~~~~~~~~~~g~I~~~nvsf~y~~---~-~~~vL~-~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~ 529 (709)
T COG2274 456 QEGDKTLIHLPKLQGEIEFENVSFRYGP---D-DPPVLE-DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-R 529 (709)
T ss_pred cccccccccccccCceEEEEEEEEEeCC---C-Ccchhh-ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-e
Confidence 44322 1222334578999999999987 2 347999 99999999999999999999999999999999999999 9
Q ss_pred EEEcC-------------eEEEEccccccCCCcHHHHhccCCCC-CHHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 655 I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
|.+|| .++||+|++.+|+|||||||.+|+|. ++|+..++++.++.++||+.+|.|++|+|||+|.|
T Consensus 530 I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred EEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 99999 49999999999999999999999985 55888999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
|||||||||+||||+++||+|+||||||||||++||+.|.++...-.-..-.+-|+|
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaH 666 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAH 666 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEc
Confidence 999999999999999999999999999999999999998876443222234455555
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.9e-69 Score=641.34 Aligned_cols=499 Identities=19% Similarity=0.191 Sum_probs=393.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (779)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (779)
+++..++.+++.++...++.++..++.++.|++++.++|.+.... . ....+.+++++++..++..+......+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA--D-RSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888888999999999999999999999999876433 1 1222333444444445555555555556678
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 345 ~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
++.++...+...+|+|.++++.. .+++|+++++++ |++.+.+++.. +.......+.+++++++++..-+ +.+++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li 280 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSW-KLALV 280 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 88999999999999999999853 459999999997 89999987643 22222222223334444443223 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (779)
.++++++..++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+.......
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (686)
T TIGR03797 281 AVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENL 360 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777888888889999999999999999999999999999999998888877554444433333322222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 501 ~~~~~~~~--p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
...+.... -..+.++.+|++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 361 ~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 440 (686)
T TIGR03797 361 LTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 22111111 1223345677888889999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
.... .....+.|+++|++|+|++ .++++|+ |+||+|+|||++||||+||||||||+++|+|+++|++| +|.++
T Consensus 441 ~~~~-~~~~~~~I~~~nvsf~Y~~----~~~~vL~-~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~id 513 (686)
T TIGR03797 441 AKTD-PGKLSGAIEVDRVTFRYRP----DGPLILD-DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG-SVFYD 513 (686)
T ss_pred CcCC-CCCCCceEEEEEEEEEcCC----CCcccee-eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEEC
Confidence 1111 1122357999999999975 2367999 99999999999999999999999999999999999999 99999
Q ss_pred C-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 659 G-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 659 g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
| +++||||+|++|+|||||||.+|+|.++++++++++.|+++++++.+|+|++|.|||+|.||||||
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQ 593 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQ 593 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 8 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
||||+||||+|+||+|+||||||||||++||++|.+. +... ..-++.|+|
T Consensus 594 rQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~~-~~T~IiItH 643 (686)
T TIGR03797 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LERL-KVTRIVIAH 643 (686)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHh-CCeEEEEec
Confidence 9999999999999999999999999999999998876 4333 445666776
No 12
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.9e-69 Score=641.65 Aligned_cols=502 Identities=20% Similarity=0.280 Sum_probs=398.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (779)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (779)
+.++..++.+++.+....++.++..++.++.|++++.++|.+.... . ....+.+++++++..++..+......+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ--A-FETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--c-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677888998988899999999999999999999999875433 1 112223333333344445555544455567
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC--CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~~--~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
+++.++...+...+|+|.++++.. .+++|++++++ +|++.+.+++.. +.......+.+++.+++++..-+ ..+++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGG-PLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh-HHHHH
Confidence 888899999999999999999864 34899999999 799999997643 22222222223333334443223 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (779)
.++.+++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777788888899999999999999999999999999999999999999999988776665555544444333
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 501 IAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 501 ~~~~~~~~p--~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
...+..... ..+.++.+|++.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.++
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 222222111 223356678888889999999999999999999999999999999999999999999999987654322
Q ss_pred CCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 579 ~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
... .+.....+.|+++|++|+|++ .++++|+ |+||+|+|||++||||+||||||||+++|+|+|+|++| +|.+
T Consensus 451 ~~~~~~~~~~~~~I~~~~vsf~Y~~----~~~~vL~-~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G-~I~i 524 (694)
T TIGR03375 451 GTRFLHRPRLQGEIEFRNVSFAYPG----QETPALD-NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLL 524 (694)
T ss_pred CCCCCCCCCccceEEEEEEEEEeCC----CCcccee-eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEE
Confidence 111 111122357999999999975 2467999 99999999999999999999999999999999999999 9999
Q ss_pred cC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 658 ~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
+| .++||||+|++|+|||||||.+|+| .++++++++++.|+++++++.+|+|++|.|||+|.||||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 98 5999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
||||||+||||++++|+|+||||||||||++|+++|.+. +....+ .-++.|+|
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItH 658 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTH 658 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEec
Confidence 999999999999999999999999999999999998764 544432 33455555
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.8e-69 Score=644.45 Aligned_cols=500 Identities=16% Similarity=0.195 Sum_probs=399.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (779)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (779)
.++..++.+++.+...++..++..++..+.|++++.++|.+.... . ....+.+++++++..++..+......+...+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG--R-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888888889999999999999999999876433 1 1122333444444445555555555566778
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 345 ~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
++.++...+...+|+|.++++.. .+++|+++++++.| +.+.+++. .+.......+.+++.+++++..-+ +.+++
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li 298 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP-VLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 89999999999999999999863 45999999999988 67888764 344444455555555555544333 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (779)
.++.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++.++++.+...+.......
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777778888888888899999999999999999999999999999999999988776666654444333332
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 501 IAFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 501 ~~~~~~~--~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
...+... ....+.++.+|++.+..+.+|.|.++++..++..+..|+..+++.+..+.+++++++|+.++++.+++.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2221111 11223456678888889999999999999999999999999999999999999999999999987654322
Q ss_pred CC-------CCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCC
Q 004004 579 IT-------EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (779)
Q Consensus 579 ~~-------~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~ 651 (779)
.. ..+....++.|+++|++|+|++ .++++|+ |+||+|++||++||||+||||||||+++|+|+++|++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~----~~~~vL~-~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSP----LEPPLIE-NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCC----CCCCccc-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 11 0110122357999999999985 2467999 9999999999999999999999999999999999999
Q ss_pred CCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 652 G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
| +|.++| .++||||+|++|+|||||||.+|+| .++++++++++.|+++++++.+|+|++|.|||+
T Consensus 534 G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 534 G-EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred c-EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 9 999988 4899999999999999999998864 889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
|.||||||||||+||||+|++|+|+||||||||||++||++|++..-. ...-++.|+|
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitH 670 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAH 670 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEec
Confidence 999999999999999999999999999999999999999999887543 3445555666
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.9e-68 Score=637.13 Aligned_cols=498 Identities=19% Similarity=0.231 Sum_probs=379.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (779)
.+++.+|+.+....++.++..++..+.|++++.++|.+.++.+.. .....+.+++..++..++..+.... ..+.+
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~ 229 (711)
T TIGR00958 154 GLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGS----FNYTM 229 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 345667778888889999999999999999999999886443101 1111111111112222222222222 23345
Q ss_pred HHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004004 347 IRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (779)
Q Consensus 347 ~~lR~~L~~~iy~K~L~ls~---~~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l 422 (779)
.++...++..+|+|.++.+. ...++|+++|++++|++.+.+.+. .+..++...+.+++++++++. ++|..+++.+
T Consensus 230 ~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l 308 (711)
T TIGR00958 230 ARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 55555566778888888865 345899999999999999998764 455566666666666555554 3335555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (779)
Q Consensus 423 ~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (779)
+.+++...+...+.++.++..++.++..++..+...|.++|+++||.|++|+.+.+++++..++..+...+.........
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777788888888888889999999999999999999999999998777776554433322222211111111
Q ss_pred HHH--HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 004004 503 FLF--WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (779)
Q Consensus 503 ~~~--~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 580 (779)
... ......+.++.+|.+.+..+.+|+|.+++++.+...+..|+..+++.+..+.+++++.+||.++++.++..++..
T Consensus 389 ~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 468 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG 468 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 111 111123345567888888999999999999999999999999999999999999999999999998765433221
Q ss_pred CCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-
Q 004004 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG- 659 (779)
Q Consensus 581 ~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g- 659 (779)
.....+..+.|+++|++|+|++ .+++++|+ |+||+|+|||++|||||||||||||+++|+|+++|++| +|.++|
T Consensus 469 ~~~~~~~~~~I~~~nVsf~Y~~---~~~~~vL~-~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~ 543 (711)
T TIGR00958 469 TLAPLNLEGLIEFQDVSFSYPN---RPDVPVLK-GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG-QVLLDGV 543 (711)
T ss_pred CCCCCCCCCeEEEEEEEEECCC---CCCCcccc-CceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCE
Confidence 1111123357999999999985 33468999 99999999999999999999999999999999999999 999998
Q ss_pred ------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
+++||||+|++|+|||||||.+|.+ .++++++++++.|+++++++.+|+|+||.+||+|.+||||||
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 4899999999999999999999975 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
|||+||||+|+||+|+||||||||||++++++|.+ ....-...++.|+|
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItH 672 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAH 672 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEec
Confidence 99999999999999999999999999999999987 21112245566666
No 15
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.6e-67 Score=627.46 Aligned_cols=497 Identities=21% Similarity=0.235 Sum_probs=386.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (779)
++..++.+++.++...++.++..++.++.|++++.++|.+.... . ....+.+++++++..++..+......+...++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--M-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVL 223 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888899999999999999999999875433 1 11222233333334444444444444556778
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004004 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (779)
Q Consensus 346 ~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~ 421 (779)
+.++...+...+|+|.++++.. .+++|+++++++ |++++.+++.. ........+.+++.+++++. ++|..+++.
T Consensus 224 ~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~ 301 (708)
T TIGR01193 224 GQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 8888889999999999999863 459999999998 99999987643 22223232333333333333 232445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 004004 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC--- 498 (779)
Q Consensus 422 l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~--- 498 (779)
++.+++.+++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..+...+...+.....
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677778888889999999999999999999999999999999999988888765443333322222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 004004 499 -SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (779)
Q Consensus 499 -~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (779)
....++... ..+.++.+|++.+..+.+|+|.++++..+...+..|+..+...+..+.+++++.+|+.++++.+++.+
T Consensus 382 ~~~~~~~~~~--~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 382 QAIKAVTKLI--LNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 222221111 22345678889889999999999999999999999999999999999999999999999998765432
Q ss_pred CCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 578 PITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 578 ~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
+... .+..+..+.|+++|++|+|++ ++++|+ |+||+|++|+++||+|+||||||||+++|+|+++|++| +|.
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~-----~~~iL~-~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G-~I~ 532 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGY-----GSNILS-DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG-EIL 532 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCC-----CCccee-ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-EEE
Confidence 2211 111223457999999999974 257999 99999999999999999999999999999999999999 999
Q ss_pred EcC-------------eEEEEccccccCCCcHHHHhccCC--CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 657 i~g-------------~iayV~Q~pwI~ngTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
++| +++||||+|++|+|||||||.+|. +.+++++.++++.++++++++.+|+|++|.|||+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 998 489999999999999999999983 47899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
||||||||+||||++++|+|+|||||||+||++|+++|.+... ..-..-++.|+|
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~~~~~T~IiitH 667 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NLQDKTIIFVAH 667 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCEEEEEec
Confidence 9999999999999999999999999999999999999876543 321233456666
No 16
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.7e-67 Score=612.42 Aligned_cols=500 Identities=17% Similarity=0.202 Sum_probs=393.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (779)
++.+++.+++.++...++.++..++....|++++.+++...... . ....+.+++++++..++..+......+...+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--D-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888999999999999999999999999998654432 1 11112222223333334444443344456677
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004004 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (779)
Q Consensus 346 ~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~ 421 (779)
+.++...+...+|+|.++.+.. ..+.|+++++++.|++++.+++. .+..++...+.+++++++++. ++|..+++.
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~ 160 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 7888888888999999998754 34899999999999999998774 355555555555555555554 333555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (779)
Q Consensus 422 l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (779)
+++.++.+.+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+........
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777888888899999999999999999999999999999999999988888776655554433333222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 502 ~~~~~~~p--~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
..+..... ..+.++.+|.+.+..+.+|+|.++++..++..+..|+..+...+..+.+++++.+|+.++++.++..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22211111 1233456777888899999999999999999999999999999999999999999999999876543322
Q ss_pred CCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 580 ~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
.. +.......|+++|++|+|++ . ++++|+ |+||+|++||+++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 321 ~~-~~~~~~~~i~~~~v~f~y~~---~-~~~il~-~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G-~I~i~g 393 (571)
T TIGR02203 321 TR-AIERARGDVEFRNVTFRYPG---R-DRPALD-SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG-QILLDG 393 (571)
T ss_pred CC-CCCCCCCeEEEEEEEEEcCC---C-CCcccc-CeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECC
Confidence 11 11122356999999999975 2 467999 99999999999999999999999999999999999999 999998
Q ss_pred -------------eEEEEccccccCCCcHHHHhccCC--CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------------~iayV~Q~pwI~ngTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+++||||+|++|+|||||||.+|+ +.++++++++++.|+++++++.+|+|+||+|||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 489999999999999999999996 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||+||||+|++|+|+|||||||+||++++++|.+. +....+ ..++-|+|
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH 526 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAH 526 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEeh
Confidence 99999999999999999999999999999999999664 443322 35555666
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.4e-66 Score=609.50 Aligned_cols=500 Identities=17% Similarity=0.189 Sum_probs=384.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (779)
++.+++.+++.++..++..++..+...+.|++++.++|.+.+.. .... ...++..+++..++..+......+...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA--DRSV-LKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777877777788888888889999999999776533 1111 11122222223333334433333445677
Q ss_pred HHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004004 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (779)
Q Consensus 346 ~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~ 421 (779)
+.++...++..+|+|.++++.. .++.|++++++++|++++.+.+. .+..++..++.+++.+++++.. ++..+++.
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~ 171 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-SWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7888888899999999998864 45999999999999999998664 3455566666666665555543 32455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (779)
Q Consensus 422 l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (779)
++++++..++.....++.++..++.++..+++.+...|.++|+++||.++.|+.+.+++++.-+.-.+...+........
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSIS 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666777888888888889999999999999999999999999999888888765443333332222222211
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 502 AFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 502 ~~~~~~--~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
...... .-..+.++.++.+.+..+.+|+|.+.++..++..+..|+..+...+..+.+++.+++|+.++++.++.++..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 111111 112334456677777889999999999999999999999999999999999999999999999866543211
Q ss_pred CCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 580 ~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
.. +..+....|+++|++|+|++ .++++|+ |+||+|++||++||+|+||||||||+++|+|+++|.+| +|.++|
T Consensus 332 ~~-~~~~~~~~i~~~~vsf~y~~----~~~~il~-~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g 404 (582)
T PRK11176 332 KR-VIERAKGDIEFRNVTFTYPG----KEVPALR-NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG-EILLDG 404 (582)
T ss_pred Cc-CCCCCCCeEEEEEEEEecCC----CCCcccc-CceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCc-eEEECC
Confidence 11 11122346999999999975 2367999 99999999999999999999999999999999999999 999988
Q ss_pred -------------eEEEEccccccCCCcHHHHhccCCC--CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------------~iayV~Q~pwI~ngTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++||||+|++|+|||||||++|++ +++++++++++.|+++++++.+|+|++|.+||+|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 3899999999999999999999863 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||+||||+|++|+|+||||||||||++|++++++. ++..-+ ..++.|+|
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtH 537 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAH 537 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEec
Confidence 99999999999999999999999999999999998754 433322 34556666
No 18
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.2e-66 Score=603.03 Aligned_cols=492 Identities=20% Similarity=0.243 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (779)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~ 352 (779)
|+.+...+++.++..++..+.|++++.++|.+. +.. . ......+++.+++..++..+......+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE--P-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888889999999999999999999874 322 1 111222233333334444444444455567788888888
Q ss_pred HHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004004 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (779)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~ 428 (779)
++..+|+|.++++.. .+++|+++|++++|++++++++. .+..+....+.+++++++++. +.|..+++.++..++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 889999999998754 44999999999999999998764 355555554444444444332 2223333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (779)
Q Consensus 429 ~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (779)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|+.|+.+.+++++..++..+...+...............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777777888888999999999999999999999999999888886654332222222111111111111111
Q ss_pred HH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q 004004 509 PT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (779)
Q Consensus 509 p~--lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (779)
.. .+.++.++++.+..+.+|.|.+++++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+....+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 11 1122234555556889999999999999999999999999999999999999999999997543222111111 11
Q ss_pred CCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------
Q 004004 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (779)
Q Consensus 587 ~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------ 660 (779)
..+.|+++|++|+|++ + ++++++ |+||+|+||++++||||+|||||||+++|+|+++|++| +|.++|.
T Consensus 317 ~~~~i~~~~v~f~y~~---~-~~~il~-~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~I~~~g~~i~~~~ 390 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPG---R-RAPALR-PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG-SIAVNGVPLADAD 390 (529)
T ss_pred CCCeEEEEEEEEECCC---C-Cccccc-ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEehhhCC
Confidence 1246999999999975 2 357899 99999999999999999999999999999999999999 9999883
Q ss_pred -------EEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 004004 661 -------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (779)
Q Consensus 661 -------iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLA 732 (779)
++||+|+|++|+|||||||.+|.+ .++++.+++++.++++++++.+|+|+||.+||+|.+|||||||||+||
T Consensus 391 ~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 391 ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred HHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 899999999999999999999875 688999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 733 RAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
||++++|+|+||||||||||++|+++|++. +....+ .-++.|+|
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH 515 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRALAQGRTVLLVTH 515 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHhcCCCEEEEEec
Confidence 999999999999999999999999998754 444322 23455555
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.3e-65 Score=602.10 Aligned_cols=498 Identities=20% Similarity=0.228 Sum_probs=373.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (779)
+..+.+.+++.++...++.++..++..+.|+++..++|.+....+ ........+++++++..++..+......+...+.
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888899999999999999999997654331 1111111122223333344444444444556677
Q ss_pred HHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004004 346 GIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (779)
Q Consensus 346 ~~~lR~~L~~~iy~K~L~ls~---~~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~ 421 (779)
+.++...+...+|+|.++.+. ..+++|+++|++++|++++.+++.. +..+....+.+++++++++. ++|+.+++.
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~li~ 171 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS-LDWRMALVA 171 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888899999999999875 3459999999999999999987653 33333333333333333332 332444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004004 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA- 500 (779)
Q Consensus 422 l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~- 500 (779)
++++++.+++.....+..++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.......
T Consensus 172 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (592)
T PRK10790 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFL 251 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555566667777777778888889999999999999999999999888877554433322211111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 004004 501 ---IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (779)
Q Consensus 501 ---~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (779)
...+......++ ++..+.+ ...+.++.|.++++..++..+..|+..++.....+.+++.+.+||.++++.++.+.
T Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 329 (592)
T PRK10790 252 LRPLLSLFSALILCG-LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQY 329 (592)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 011111111111 1122223 46788999999999999999999999999999999999999999999998654322
Q ss_pred CCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 578 ~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
..... ....+.|+++|++|+|++ ++++|+ |+||+|++||++||||+||||||||+++|+|+++|.+| +|.+
T Consensus 330 ~~~~~--~~~~~~i~~~~v~f~y~~-----~~~il~-~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~i 400 (592)
T PRK10790 330 GNDDR--PLQSGRIDIDNVSFAYRD-----DNLVLQ-NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG-EIRL 400 (592)
T ss_pred CCCcc--CCCCCeEEEEEEEEEeCC-----CCceee-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEE
Confidence 11111 112346999999999974 257999 99999999999999999999999999999999999999 9999
Q ss_pred cC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 658 ~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+| +++||||+|++|+|||||||.+|++.++++.+++++.++++++++.+|+|++|.+||+|.|||||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 98 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||+||||+|+||+|+||||||||||++|+++|.+. ++...+ ..++.|+|
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~~~~~~tvIivtH 533 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAAVREHTTLVVIAH 533 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhCCCEEEEEec
Confidence 99999999999999999999999999999999988654 443322 34555665
No 20
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.3e-65 Score=599.17 Aligned_cols=503 Identities=17% Similarity=0.236 Sum_probs=382.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (779)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (779)
.++.+++.+++.+....++.++..++..+.|++++.++|.+.... +.... ..++..+++..++..+......+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD--SSGLL-NRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc--cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888999999999999999999999744322 11111 111212222222333333444455678
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 345 ~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
++.++...+...+|+|.++++.. ..+.|++++++++|++.+.+++. .+..++...+.+++++++++..-. +.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 163 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 88899999999999999998763 34899999999999999998764 344444444444444444432222 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (779)
.++.+++.+.+...+.++.++..++.++..+++.+...|.++|+++||.++.|+.+.+++++..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445566778888888888999999999999999999999999999998888877655433333222222211
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 501 IAFLF--WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 501 ~~~~~--~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
..... ......+.++.+|++.+..+.+|+|.++++..++..+..|+..++..+..+.+++++++||.++++.++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 11111 1112233455677888888999999999999999999999999999999999999999999999986543221
Q ss_pred CCC--CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 579 ITE--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 579 ~~~--~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
... ....+....|+++|++|+|++ +.++++|+ |+||+++|||+++|+|++|||||||+++|+|+++|.+| +|.
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~---~~~~~iL~-~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G-~I~ 398 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPA---RPDQPALD-GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-RIL 398 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCC---CCCCcccc-ceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEE
Confidence 111 111112346999999999975 22357999 99999999999999999999999999999999999999 999
Q ss_pred EcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 657 i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
++| .++||||+|++|+|||||||.+|.| .++++.+++++.+++.++++.+|+|++|++||+|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 998 4899999999999999999999876 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||||+||||+|++|||+|||||||+||.++++.+++ .+....+ ..++.|+|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~t~IiitH 533 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGRTTLIIAH 533 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCCEEEEEec
Confidence 999999999999999999999999999999999987665 3444432 45556666
No 21
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-64 Score=588.12 Aligned_cols=491 Identities=20% Similarity=0.206 Sum_probs=378.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (779)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR 350 (779)
+.+++.++...++.++..++..+.|++++.++|.+.... . ....+.+++++++..++..++.....+...+++.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG--S-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888888999999999999999999999765322 1 1122233334444445555555555666778889999
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004004 351 SALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (779)
Q Consensus 351 ~~L~~~iy~K~L~ls~~~~~sG~ivnlms~Dv~~i~~~~~~--~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~ 428 (779)
..++..+|+|.++++.. ..++..+.+++|++++++++.. +..+...++.++..+++++.. + +.+++.++.++++
T Consensus 79 ~~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~l~li~l~~~~l~ 154 (544)
T TIGR01842 79 GALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLH-P-WIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHH
Confidence 99999999999999873 3456678889999999987643 333344444333333332222 2 3333334334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004004 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA- 507 (779)
Q Consensus 429 ~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~- 507 (779)
..+.....+..++..++.++..+++.+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+........
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777788889999999999999999999999999999999888776555444433332222222111111
Q ss_pred -HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q 004004 508 -SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (779)
Q Consensus 508 -~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 586 (779)
....+.++.+|++.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..++.... ..
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~ 312 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPL--PE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCC--CC
Confidence 112234556788888899999999999999999999999999999999999999999999999876543221111 11
Q ss_pred CCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------
Q 004004 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (779)
Q Consensus 587 ~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------- 659 (779)
.+..|+++|++|+|++ .++++++ |+||+++|||+++|+||+|||||||+++|+|+++|++| +|.++|
T Consensus 313 ~~~~i~~~~v~~~y~~----~~~~~l~-~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~i~~~~ 386 (544)
T TIGR01842 313 PEGHLSVENVTIVPPG----GKKPTLR-GISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-SVRLDGADLKQWD 386 (544)
T ss_pred CCCeEEEEEEEEEcCC----CCccccc-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEehhhCC
Confidence 2346999999999974 2357899 99999999999999999999999999999999999999 999987
Q ss_pred ------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 004004 660 ------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (779)
Q Consensus 660 ------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLA 732 (779)
.++||||+|++|++|+||||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 3899999999999999999987654 789999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH--HHHHhHhcc
Q 004004 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF--HQLLFSINH 777 (779)
Q Consensus 733 RAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L--~~~~~~~~~ 777 (779)
||+++||+++|||||||+||+++++++.+ ++.... ...++.|+|
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith 512 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITH 512 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeC
Confidence 99999999999999999999999998865 344432 134555666
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.2e-64 Score=590.80 Aligned_cols=493 Identities=19% Similarity=0.227 Sum_probs=375.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (779)
.+++.+++.+...+++.++..++.++.|+++..++|.+..+. . ......+.+++ .++..+......+...++..
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--D-IFPLLAAWAGF---GLFNIIAGVLVARHADRLAH 85 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--c-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888899999999999999999999876532 1 11111111111 12222222223334567778
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
++|..+...+|+|.++++.. ..++|++++++++|++.+.+.+. .+.......+..++.+++++. ++++.+++.++
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~ 164 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVV 164 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 88888899999999999763 45999999999999999987543 233333333333333333332 33244454555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 004004 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI----ERDSLKKYLYTCS 499 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~----E~~~l~~~~~~~~ 499 (779)
++++...+...+.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-++ +.+..+.......
T Consensus 165 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK13657 165 LGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASV 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556677778888888888999999999999999999999999999999877776554332 2222222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 500 ~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
...+ ......+.+++++++.+..+.+|+|.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+..
T Consensus 245 ~~~~--~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 245 LNRA--ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 2211 11222344567788888899999999999999999999999999999999999999999999999865432211
Q ss_pred CC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 580 TE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 580 ~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
.. .+....+..|+++|++|+|++ .+++|+ |+||+++||++++|+|++|||||||+++|+|+++|.+| +|.++
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~y~~-----~~~iL~-~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G-~I~i~ 395 (588)
T PRK13657 323 PGAIDLGRVKGAVEFDDVSFSYDN-----SRQGVE-DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RILID 395 (588)
T ss_pred CCCCCcCCCCCeEEEEEEEEEeCC-----CCceec-ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEEC
Confidence 11 111122346999999999974 246899 99999999999999999999999999999999999999 99999
Q ss_pred C-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 659 g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
| .++||||+|++|+|||||||++|+| .++++.+++++.|+++++++.+|+|++|.+||+|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 8 4899999999999999999999975 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH-HHHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF-HQLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L-~~~~~~~~~ 777 (779)
|||||+||||++++|+|+|||||||+||+++++.|++.. .... ...++.|+|
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitH 528 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAH 528 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEe
Confidence 999999999999999999999999999999999987654 3332 245666776
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.1e-64 Score=588.48 Aligned_cols=500 Identities=19% Similarity=0.216 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (779)
.+.+.+++.++.+.++.++..++....|.+++.++|... .+............++++++..++..+......+...+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 9 KLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888899999999999999999999999643 2110000011111122222233334444444445566788
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004004 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (779)
Q Consensus 347 ~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l 422 (779)
.++...++..+|+|.++++.. ..++|++++++++|++++++++.. +..+....+.+++++++++. +.|..+++.+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~~ 167 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTLG 167 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888899999999999999864 348999999999999999998753 44445555555444444432 2223333332
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 423 FSTIFVM-VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (779)
Q Consensus 423 ~~~ll~~-~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (779)
+++++.. .+...+.++.++..++.+++.++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 168 GILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 233455666677778888888999999999999999999999999988888765444333333322222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 502 AFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 502 ~~~~~~--~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
..+... ....+.++.++++. .++.+++|.+++++.+... ...|+..++..+..+.+++.|.+||.++++.++..++
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 111111 11222334556665 4778999998887776544 4568899999999999999999999999987653221
Q ss_pred CCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
....+.....+.|+++|++|+|++ + ++++|+ |+||+|++||++|||||||||||||+++|+|+++|++| +|.++
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~---~-~~~il~-~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G-~I~i~ 400 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPD---Q-PQPVLK-GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG-EILLN 400 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCC---C-CCccee-cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEEC
Confidence 111111122357999999999975 2 357899 99999999999999999999999999999999999999 99999
Q ss_pred Ce-------------EEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 659 GK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 659 g~-------------iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
|. ++||||+|++|++||+|||.+|+| .++++.+++++.++++++++. |+|+||.|||+|.+||||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 83 899999999999999999999975 689999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||+||||+++||+|+|||||||+||++++++|.+. +....+ ..++.|+|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitH 532 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITH 532 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEec
Confidence 99999999999999999999999999999999988764 443322 23445555
No 24
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.5e-64 Score=586.30 Aligned_cols=481 Identities=26% Similarity=0.354 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (779)
.+.+ ++ .+....++.++..++....|.++..++|.+.... .........+++..+ +..+......+...+.+.
T Consensus 9 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~ 81 (567)
T COG1132 9 KYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADL-GELLELLLLLLLLAL----LGGVLRALQSYLGSRLGQ 81 (567)
T ss_pred HHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344 66 7888888889999999999999999999876211 011111111222222 222222223333445557
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWL-LPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~~~~~~~-~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
++...++..+|+|.++++.. ..++|++++++++|++.+++.+........ .++.++..+++++ ...|..+++.++
T Consensus 82 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~ 160 (567)
T COG1132 82 KIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 78888888999999999843 237899999999999999998865433333 3333333333333 344344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004004 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA- 502 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~- 502 (779)
..+++......+.++.++..++..+..++..+.+.|.++|++++|.|+.|+...++.++..+...+...+.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666888888888899999999999999999999999987766665543332222111111111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 004004 503 FL-FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581 (779)
Q Consensus 503 ~~-~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 581 (779)
.. ....-....++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 11 11122233445567777778889999999999999999999999999999999999999999999998654222111
Q ss_pred CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--
Q 004004 582 PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (779)
Q Consensus 582 ~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-- 659 (779)
. ....++.|+++|++|+|++ ++++++ |+||+++|||++|||||||||||||+++|+|+++|++| +|.+||
T Consensus 321 ~-~~~~~~~I~f~~vsf~y~~-----~~~vl~-~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G-~I~idg~d 392 (567)
T COG1132 321 P-LKDTIGSIEFENVSFSYPG-----KKPVLK-DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG-EILIDGID 392 (567)
T ss_pred C-CCCCCCeEEEEEEEEEcCC-----CCcccc-CceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCEe
Confidence 1 1223356999999999984 368999 99999999999999999999999999999999999999 999988
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
++|||||+|++|+|||+|||.+|+| .++|+.+++++.++++++++.+|+|+||.|||+|.+|||||||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 4899999999999999999999998 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
||+||||+++||+|++|||||||||++||+.|.+..-
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 9999999999999999999999999999999887643
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.5e-64 Score=598.93 Aligned_cols=501 Identities=17% Similarity=0.194 Sum_probs=388.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (779)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (779)
.++..++.+++.+...++..++..++.++.|++++.++|.+.... . ......+++++++..++..+......+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~--~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR--G-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888899999999999999999999875432 1 1122233333444444455555555555677
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 345 ~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
++.++...+...+|+|.++++.. .+++|++++++ +|++.+.+++. .+.......+.+++.+++++.. .+..+++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY-SPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 88899999999999999999864 45999999999 59999999764 3333333333333333343332 3245555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (779)
.++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+.......
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666677777778888888889999999999999999999999999998888877655444433333322222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 501 ~~~~~~~~--p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
........ -..+.++.+|++.+..+.+|.|.++++..+...+..|+..+.+.+..+.+++++++|+.++++.++..+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 22111111 1223356678888889999999999999999999999999999999999999999999999987654332
Q ss_pred CCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
....+....++.|+++|++|+|++ .++++|+ |+||+|++||++||+|++|||||||+++|+|+++|.+| +|.++
T Consensus 444 ~~~~~~~~~~~~i~~~~vsf~y~~----~~~~il~-~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G-~I~id 517 (694)
T TIGR01846 444 AGLAALPELRGAITFENIRFRYAP----DSPEVLS-NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG-QVLVD 517 (694)
T ss_pred CCCCCCCCCCCeEEEEEEEEEcCC----CCccccc-cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEEC
Confidence 111111222357999999999975 2356899 99999999999999999999999999999999999999 99999
Q ss_pred C-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 659 g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
| .++||+|+|++|+|||||||.+++| .++++..++++.++++++++.+|+|++|.+||+|.|||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 8 3899999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||+||||++++|+|+|||||||+||+++++++.+. +....+ ..++.|+|
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH 650 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAH 650 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeC
Confidence 99999999999999999999999999999999998764 333322 23455555
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-63 Score=583.05 Aligned_cols=484 Identities=20% Similarity=0.248 Sum_probs=366.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004004 284 AGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMA 363 (779)
Q Consensus 284 ~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ 363 (779)
.++..++..+.|++++.++|.+.... ......+.+++.+++..++..+......+...+.+.++...++..+|+|.++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 81 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQH--MTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSR 81 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556667788999999999875432 1111122223333333334444443334445567788888889999999999
Q ss_pred ccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 364 IKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQ 439 (779)
Q Consensus 364 ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~ 439 (779)
++.. .+++|++++++++|++.+..... .+..++..++..++++++++..++|..+++.++++++.+.+...+.++.
T Consensus 82 ~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 82 QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred CCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8763 45899999999999999987653 3455555544444444444333554455555555556666667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 004004 440 ERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA--SPTLVSVITF 517 (779)
Q Consensus 440 ~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~--~p~lv~~~~f 517 (779)
++..++.++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+.............. ....+.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999988877664333222222222222211111111 1122334556
Q ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeE
Q 004004 518 GVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGE 597 (779)
Q Consensus 518 ~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~s 597 (779)
|++.+.++.+|+|.++++..+...+..|+..+++.+..+.+++++.+||.++++.++..++... +....++.|+++|++
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEE
Confidence 7788889999999999999999999999999999999999999999999999987543221111 111223469999999
Q ss_pred EEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEE
Q 004004 598 YAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (779)
Q Consensus 598 Fsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV 664 (779)
|+|+. .+.++|+ |+||+++||++++|+||+|||||||+++|+|+++|++| +|.++| .++||
T Consensus 321 ~~y~~----~~~~~l~-~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 321 FTYPQ----TDHPALE-NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG-DIRFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred EECCC----CCCcccc-CeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEHhhCCHHHHHhheEEE
Confidence 99975 2357899 99999999999999999999999999999999999999 999987 38999
Q ss_pred ccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 004004 665 PQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (779)
Q Consensus 665 ~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~L 743 (779)
+|+|++|++||||||.+|++ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|+|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999964 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 744 FDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 744 LDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
||||||+||+++++++.+. ++...+ ..++.|+|
T Consensus 475 lDEpts~LD~~~~~~i~~~-l~~~~~~~tii~itH 508 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAH 508 (569)
T ss_pred EECccccCCHHHHHHHHHH-HHHHhCCCEEEEEec
Confidence 9999999999999998775 443322 23344444
No 27
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-64 Score=593.24 Aligned_cols=485 Identities=19% Similarity=0.248 Sum_probs=366.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 004004 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQ--RQWYFGANRIGI 347 (779)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~--~~~~~~~~r~~~ 347 (779)
.+..|+.++++.+.+++.....-+..+++..++.....+++.........+++.++...+...+.. ++|+| ...|.
T Consensus 659 ~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f--~~~ge 736 (1228)
T KOG0055|consen 659 NKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFF--GIAGE 736 (1228)
T ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 345677788888888888887777777888888766543311112211113333333333332222 23333 34455
Q ss_pred HHHHHHHHHHHHHHhcccCC----CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA----GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~----~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l 422 (779)
++-..++.+.|+|.|+.+.. .+++|.+.+++++|+..+...+.. +..+......+++++.+-+ ..||-.+++++
T Consensus 737 ~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf-~~~W~lalv~l 815 (1228)
T KOG0055|consen 737 KLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF-IYGWRLALVVL 815 (1228)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 55555556778888887642 233399999999999999887643 3333333333344433332 34666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004004 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAI 501 (779)
Q Consensus 423 ~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~~~~ 501 (779)
+..+++....+...+.......+.+++.++-.+...|++.|||+|+.++.|++|.+...+. ++......++. ....+.
T Consensus 816 a~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~-~i~gl~ 894 (1228)
T KOG0055|consen 816 ATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG-LISGLG 894 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8888888888888899999999999999999999999999999999999999988777553 22222223332 222222
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCC
Q 004004 502 AFLFWASPT--LVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (779)
Q Consensus 502 ~~~~~~~p~--lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~-~~~ 578 (779)
..+..+... ......||.+++..+..++..+|..+..+.+-...+.+.....+.+..++.|..+|.++++.++. +.+
T Consensus 895 f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 895 FGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD 974 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 211111111 23345678888889999999999998888777777788888888899999999999999998763 332
Q ss_pred CCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 579 ITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 579 ~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
... ...+...+.|+++|++|+||. .++.++++ |.||+|++|+.+|+||||||||||.+.+|.++|+|.+| .|.+
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPs---RP~~~Il~-~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G-~V~I 1049 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPT---RPDVPVLN-NLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG-KVKI 1049 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCC---CCCchhhc-CCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEE
Confidence 211 112234578999999999998 66788999 99999999999999999999999999999999999999 9999
Q ss_pred cC-------------eEEEEccccccCCCcHHHHhccCC-CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 658 HG-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 658 ~g-------------~iayV~Q~pwI~ngTIreNIlfG~-~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
+| ++|.|+|+|.|||+||||||+||. ..++++..++++.++.+++|.+||+|+||.+||||.+|||
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 98 489999999999999999999993 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
|||||||||||+.+||+||||||+|||||+++|+-+ ++.+
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvV-QeAL 1169 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVV-QEAL 1169 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHH-HHHH
Confidence 999999999999999999999999999999999643 4444
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.2e-62 Score=618.10 Aligned_cols=496 Identities=18% Similarity=0.161 Sum_probs=357.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (779)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~l 349 (779)
++.+++.+++++++.++..++..+.|+++..+++.+.... .....+..+++.+++..++..++.....+...+++.++
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~ 897 (1466)
T PTZ00265 820 IFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKV 897 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666888888888999999999999999998654321 11111212222222222333333333344456778888
Q ss_pred HHHHHHHHHHHHhcccCC-----CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 350 RSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 350 R~~L~~~iy~K~L~ls~~-----~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
...++..+|+|.++++.. ..++|++++++++|++.+.+++. .+..+...++.+++++++++. +.|..+++.+
T Consensus 898 ~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~l~l~~~- 975 (1466)
T PTZ00265 898 EKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPIVAAVLT- 975 (1466)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 888888999999998753 24799999999999999998764 334444444444444444332 3323222222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHH
Q 004004 424 STIFVMVSNTPLANRQERF-HSMI-----------------MEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE 485 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~-~~~~-----------------~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~ 485 (779)
+++.++...+.++.+.. .++. .+..++....++|.++||++||.|+.|+.+.+++++.-+
T Consensus 976 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~ 1053 (1466)
T PTZ00265 976 --GTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAID 1053 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHH
Confidence 22222223333322211 1111 122334467889999999999999999999988877554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 486 IERDSLKKYLYTCSAIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSL 563 (779)
Q Consensus 486 ~E~~~l~~~~~~~~~~~~~~~~~--p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~ 563 (779)
...+..++.....+....+.... ...+.++++|++++..+.+|+|.+++++.++.....|+..+...+..+.+++++.
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~ 1133 (1466)
T PTZ00265 1054 YSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSF 1133 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333332222222211111111 1233456788888889999999999988776666678888999999999999999
Q ss_pred HHHHHHhccccCCC--CCCCCC---CCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhH
Q 004004 564 YRIQEFIKEDNQKK--PITEPT---SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSS 638 (779)
Q Consensus 564 ~RI~~fL~~~e~~~--~~~~~~---~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKST 638 (779)
+|+.++++.++..+ +....+ ....++.|+|+|++|+|++ .++.++|+ |+||+|++|+++||||||||||||
T Consensus 1134 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---~~~~~vL~-~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1134 EKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYIS---RPNVPIYK-DLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCC---CCCCcccc-CeeEEEcCCCEEEEECCCCCCHHH
Confidence 99999998653211 111110 1122357999999999985 33357999 999999999999999999999999
Q ss_pred HHHHHhccccC------------------------------------------------------CCCCeEEEcC-----
Q 004004 639 LLSSILGEIPR------------------------------------------------------ISGAAIKVHG----- 659 (779)
Q Consensus 639 LL~~iLGe~~~------------------------------------------------------~~G~~I~i~g----- 659 (779)
|+++|+|+|+| .+| +|.++|
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~I~idG~di~~ 1288 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG-KILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC-eEEECCEEHHh
Confidence 99999999998 599 999998
Q ss_pred --------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 --------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.||||||+|+||+|||||||.||+| .++++++++++.++++++|+.||+|++|.|||+|.+||||||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 4899999999999999999999975 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH---HHHHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF---HQLLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L---~~~~~~~~~ 777 (779)
||||+++||+|+||||||||||+++|+.|.+ .+.... ..-++.|+|
T Consensus 1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~-~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1369 IARALLREPKILLLDEATSSLDSNSEKLIEK-TIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHHhccCCCEEEEEec
Confidence 9999999999999999999999999998765 454442 234566776
No 29
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1e-61 Score=569.15 Aligned_cols=493 Identities=17% Similarity=0.232 Sum_probs=376.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (779)
.+++.+++.++...++.++..++..+.|++++.++|.+...+ ... .+ ++..++..++..+......+...++..
T Consensus 12 ~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 12 SYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS--DVL--PT--LALWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999875433 111 11 111112223333333333445677888
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
++|..+...+|+|.++++.. .+++|++++++++|++.+.+++. .+.......+.+++.+++++. +.|..+++.++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~ 164 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 89999999999999999864 45899999999999999988664 333444444444444333332 33244444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 004004 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIE----RDSLKKYLYTCS 499 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E----~~~l~~~~~~~~ 499 (779)
++++...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++- .+..+.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566667777888888888888889999999999999999999999988877776643322 222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 500 ~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
...+... -..+.++.+|++.+..+.+|.|.+++++.++..+..|+..+.+.+..+.+++.+.+|+.++++.++..++.
T Consensus 245 ~~~~~~~--~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 322 (585)
T TIGR01192 245 LNRMAST--ISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP 322 (585)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 1111111 12234556788888899999999999999999999999999999999999999999999999865432211
Q ss_pred CC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 580 TE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 580 ~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
.. .+.....+.++++|++|+|++ ++++++ |+||+|++||+++|+||+|||||||+++|+|+++|.+| +|.++
T Consensus 323 ~~~~~~~~~~~~i~~~~v~~~y~~-----~~~~l~-~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~ 395 (585)
T TIGR01192 323 ADAPELPNVKGAVEFRHITFEFAN-----SSQGVF-DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG-QILID 395 (585)
T ss_pred ccCCCCCCCCCeEEEEEEEEECCC-----CCcccc-ceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC-EEEEC
Confidence 11 111112346999999999975 246899 99999999999999999999999999999999999999 99998
Q ss_pred C-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 659 g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
| .++||+|+|++|++||||||.+|.+ .++++.+++++.+++++++..+|+|++|.+||+|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 7 4899999999999999999999965 6788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||+||||++++|+|+|||||||+||+++++.+.+. +....+ ..++.|+|
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~~~~~~tvI~isH 528 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDALRKNRTTFIIAH 528 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHHHhCCCEEEEEEc
Confidence 99999999999999999999999999999999988653 433321 23344445
No 30
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-61 Score=538.37 Aligned_cols=482 Identities=21% Similarity=0.308 Sum_probs=376.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (779)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy 358 (779)
...++..+..++...+-+++...++.+...+ . ....+.++++++++.++.++.........++.+.++|..++..++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQ--L-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888888888877665443 1 222334444555555666665554555677899999999999999
Q ss_pred HHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004004 359 KRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIW---LLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (779)
Q Consensus 359 ~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~---~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~ 431 (779)
+|..++++. ..++|++.++++.-+|.++.++. ++++.. ..|+-++++++.+.+ .++++-++.++++.++
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w----~aalIllit~PlIPlf 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNW----AAALILLITAPLIPLF 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHH
Confidence 999999864 34899999999999999999874 344443 345545545444444 3444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKL----LRLREIERDSLKKYLYTCSAIAFLFWA 507 (779)
Q Consensus 432 ~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i----~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (779)
...+++..++..++.++....--...-+.|+|+.++|.|+..+...+++ ++.|+.-++.+|......++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777778888888888999999999999999866555555 668888888887655555554444433
Q ss_pred HHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCC--CC
Q 004004 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP--TS 584 (779)
Q Consensus 508 ~p~lv~~~~f~~~~l~~-~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~--~~ 584 (779)
+..+ ..+ +.+.-+.+ |++|....+.++.+..-+..|++.+...+..-.++..+.+.+..|++.|+...+..+. ..
T Consensus 237 siAl-vAv-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SIAL-VAV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HHHH-HHH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 3222 233 33444456 6999999999999999999999999999999999999999999999988764433321 11
Q ss_pred CCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----
Q 004004 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (779)
Q Consensus 585 ~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----- 659 (779)
...+..++.+|++|.|++ +++.++ |+||++++|+++||||+||||||||+++|+|+++|++| +|.+||
T Consensus 315 ~~~~~ei~~~~l~~~y~~-----g~~~l~-~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G-~I~vng~~l~~ 387 (559)
T COG4988 315 NEPPIEISLENLSFRYPD-----GKPALS-DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG-EIRVNGIDLRD 387 (559)
T ss_pred cCCCceeeecceEEecCC-----CCcccC-CceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCccccc
Confidence 122334556699999986 248899 99999999999999999999999999999999999999 999998
Q ss_pred --------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 --------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 --------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
+++||||+|+||+|||||||++|++ .++++..++++..+|.+.++. |+|.||+|||+|.+|||||+||++
T Consensus 388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 388 LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred cCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHH
Confidence 4999999999999999999999998 678999999999999999999 999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
||||+++++++||||||||+||++||+.|.+....-.-.+.+..|+|
T Consensus 467 LARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itH 513 (559)
T COG4988 467 LARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITH 513 (559)
T ss_pred HHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEc
Confidence 99999999999999999999999999988765444444455566666
No 31
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-59 Score=598.03 Aligned_cols=426 Identities=17% Similarity=0.189 Sum_probs=322.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPA 418 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~ 418 (779)
...+.+.-..+...+|+|.++.+.. ..++|+++|++++|++.+++.+. .+..+...++.++.++++++.... +.+
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~-~~~ 1108 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP-IAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3445566666667778888887753 45999999999999999999775 345555666666666555544333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (779)
Q Consensus 419 l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (779)
++.+.++++...+...+.+..++.++...+.++...+..+|.++|+++||.|++|+.|.++..+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444555555566666666677788899999999999999999999998887766554443322211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 004004 499 SAIAFLFWASPTLVSVITFGVCILL-KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (779)
Q Consensus 499 ~~~~~~~~~~p~lv~~~~f~~~~l~-~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (779)
.+..........+ .++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+.++.+|.+||.++++.+++.+
T Consensus 1189 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1189 RWLAVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 1111111111111 11222333333 578999999999999999999999999999999999999999999997654332
Q ss_pred CC--C-CCC-CCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCC
Q 004004 578 PI--T-EPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (779)
Q Consensus 578 ~~--~-~~~-~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~ 653 (779)
.. . ..+ ..+.++.|+++|++|+|++ + .+++|+ |+||+|++||++||||++|||||||+++|+|+++|++|
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~---~-~~~vL~-~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G- 1341 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYRE---D-LDLVLR-HINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG- 1341 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCC---C-Cccccc-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-
Confidence 11 1 111 1134468999999999975 2 357999 99999999999999999999999999999999999999
Q ss_pred eEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 654 ~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
+|.++| +++||||+|.+|+|||||||....++++++..++++.|+++++++.+|+|+||+|||+|.|
T Consensus 1342 ~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1342 EIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred eEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 999998 4899999999999999999984447899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
|||||||||+||||++++|+|+||||||||||++|++.|.+ .|+...++ -+..|+|
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~~~~TvI~IAH 1478 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-TIRTQFEDCTVLTIAH 1478 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEec
Confidence 99999999999999999999999999999999999987644 45444332 3445555
No 32
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-60 Score=518.21 Aligned_cols=480 Identities=22% Similarity=0.270 Sum_probs=366.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 004004 288 TIASYIGPFLITNFVSFLSGKHD-HSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF 366 (779)
Q Consensus 288 ~~~~~~~P~ll~~li~~l~~~~~-~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~ 366 (779)
-.+....|++++..+|.+...++ +.........+.++.++.+....++-...+....+..++-......+|++.+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 46667789999999998853221 11111223334445555555555554444555566677777778889999988876
Q ss_pred C---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 367 A---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERF 442 (779)
Q Consensus 367 ~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~ 442 (779)
+ .+.+|++.+.|..-...|.+++. .+..+....+++.+....+++..|...++..++.......+......+..++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 4 45999999999999999988774 4566666777888888889999993333333444444455566677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 004004 443 HSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFW--ASPTLVSVITFGV 519 (779)
Q Consensus 443 ~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~--~~p~lv~~~~f~~ 519 (779)
+++++++.++-.+..-|.|.|-.+||.|+-|+.-.++..+ +++.|...++....+.. .++.-- .+..++.++..+.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~-lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAF-LNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988777765 45555444433322221 111110 0111122222233
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEE
Q 004004 520 CILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYA 599 (779)
Q Consensus 520 ~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFs 599 (779)
.-+..+.+|.|......+++.+|..|+..+...+..+.|+..-+.-.....+.++...+. ..+....++.|+|+|++|+
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDVHFS 360 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEeeEEE
Confidence 334567899999999999999999999999999999999888877766554433322211 1223334457999999999
Q ss_pred eccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEcc
Q 004004 600 WDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQ 666 (779)
Q Consensus 600 w~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q 666 (779)
|++ ++++|+ ++||+|++||+|||||++||||||++++|+++++ .+| +|.++| .||||||
T Consensus 361 y~~-----k~~iL~-gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG-~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 361 YGP-----KRKVLK-GVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG-SILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eCC-----CCceec-ceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC-cEEECCeeHhhhChHHhhhheeEeCC
Confidence 986 467999 9999999999999999999999999999999999 999 999999 3999999
Q ss_pred ccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 004004 667 SSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (779)
Q Consensus 667 ~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLD 745 (779)
|..|||+||-+||.+|++ ..+|+..++++..++++-+..||+|++|.+||||..|||||||||+||||+++||||+++|
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 999999999999999997 5777888888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 746 DPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 746 Dp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
||||+||++||+.|++.....+-.+-.++|+|
T Consensus 513 EaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH 544 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMDVMSGRTVIMIVH 544 (591)
T ss_pred CcccccchhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999999999999986444333444556666
No 33
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-58 Score=587.38 Aligned_cols=426 Identities=17% Similarity=0.162 Sum_probs=304.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPA 418 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~ 418 (779)
.+.+.+.-..+...+|++.++.+.. .+++|+++|++++|++.+++.+. .+..+....++++.+++++..... +..
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~-~~~ 1056 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST-ISL 1056 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4456666666777888888888753 45999999999999999998764 344555555555544443332111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (779)
Q Consensus 419 l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (779)
++.+.+.++++.+..+..+..++.++...+.+....+..+|.++|+++||.|++|+.|.++.++..+...+.........
T Consensus 1057 ~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1057 WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333334444445555555666777788999999999999999999888776665444433221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004004 499 SAIAFLFWASPTLVSVITFGVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (779)
Q Consensus 499 ~~~~~~~~~~p~lv~~~~f~~~~l~-~~~Lt-----~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 572 (779)
.+..........++ ++..+.+.+. ++..+ ++.+-.++++...+..++..+......+.++.+|.+|+.++++.
T Consensus 1137 ~wl~~~l~~~~~~~-i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1137 RWLAIRLETLGGLM-IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11110000111111 1111222233 22211 33333444555666777888888888899999999999999987
Q ss_pred ccCCCCCCC----CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 573 DNQKKPITE----PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 573 ~e~~~~~~~----~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
|++.+...+ .+..+.++.|+|+|++|+|++ + .+++|+ |+||+|+|||++||||+||||||||+++|+|+++
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~---~-~~~VL~-~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP---E-LPPVLH-GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC---C-CCceec-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 654322111 111133467999999999975 2 357999 9999999999999999999999999999999999
Q ss_pred CCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCcccc
Q 004004 649 RISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (779)
Q Consensus 649 ~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 715 (779)
|++| +|.++| +++||||+|.+|+|||||||.+++++++++.+++++.|+++++++.+|+|+||+||
T Consensus 1291 p~~G-~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1291 LERG-RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred CCCc-eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 9999 999998 48999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|+|.||||||||||+||||++++|+|+||||||||||++|++.|. +.|+...+ .-+..|+|
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~~~~TvI~IAH 1431 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAH 1431 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999998764 44544433 23445555
No 34
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.5e-57 Score=531.13 Aligned_cols=487 Identities=14% Similarity=0.136 Sum_probs=347.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (779)
Q Consensus 268 ~l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (779)
.+++ .+|+.+++.+++.++..++....|++++.+++...... . ...+.+++ +++. ..+......+...+.+
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~--~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~ 81 (555)
T TIGR01194 10 ALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q--GSLFSFGG-LCLL---ALLFRIGADIFPAYAG 81 (555)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c--hHHHHHHH-HHHH---HHHHHHHHHHHHHHHH
Confidence 3567 78888999999999999999999999998876321111 0 11111121 1111 1122222333456677
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 347 ~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
.++...++..+|+|.++++.. ..++|++++++++|++.+++++..+..+....+.+++++++++. +.|..+++.++
T Consensus 82 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~li~l~ 160 (555)
T TIGR01194 82 MHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAY-LSVPMFAITIS 160 (555)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 888888889999999999864 35999999999999999999875555555554444444444433 23234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLLRLREIERDSLKKYLYTCSAI 501 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~--~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (779)
.+++.+++..+..++.++...+..+..++..+.+.|.++|++++|.++.++ ...+++++..++..+...+........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T TIGR01194 161 AIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAA 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444555556666667777778888888999999999999999999854 334444332222211111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 502 AFLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 502 ~~~~~~~p~lv~~~~f~~~~l---~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
...... +..+..+.+++ ..+.+|.|++++++.+...+..|+..+.+.+..+.++++|.+||.++++.++.++.
T Consensus 241 ~~~~~~----~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 241 ENFGQL----LFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 110011 11111111111 12689999999999999999999999999999999999999999999864221110
Q ss_pred C---CC-C-----CCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 579 I---TE-P-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 579 ~---~~-~-----~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
. .+ . +.......|+++|++|+|++++ ..++++|+ |+||++++||+++||||+|||||||+++|+|+++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~~~~l~-~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPE-GSEGFALG-PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCC-CCcCceec-cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0 00 0 1111235699999999997511 01246899 99999999999999999999999999999999999
Q ss_pred CCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccC
Q 004004 650 ISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (779)
Q Consensus 650 ~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE 716 (779)
++| +|.++| .++||+|+|++|++|++||+ ..+.++++.+++++.++++++++.+|+|++|.
T Consensus 395 ~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 395 QEG-EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CCc-EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 999 999988 38999999999999999996 34467888999999999999999999999994
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH--HHHHhHhcc
Q 004004 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF--HQLLFSINH 777 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L--~~~~~~~~~ 777 (779)
.+|||||||||+||||+++||+|+|||||||+||++++++|.+..+.... ..-++-|+|
T Consensus 469 --~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH 529 (555)
T TIGR01194 469 --TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529 (555)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 89999999999999999999999999999999999999999887654332 234455555
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-57 Score=579.09 Aligned_cols=425 Identities=16% Similarity=0.144 Sum_probs=305.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPA 418 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~ 418 (779)
.+.+.+.-..+...+++|.++.+.. ..++|+++|++++|++.+++.+.. +..+....++++.+++++..... +..
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~ 1053 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST-ISL 1053 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455566666667778888888754 458999999999999999987643 34444444444444444332222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (779)
Q Consensus 419 l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (779)
++.+.+.++.........+..++.++...+.++...+..+|.++|+++||.|++|+.|.++.++..+...+.........
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1495)
T PLN03232 1054 WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN 1133 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111222222233333444555556677777888999999999999999999988877665554443222111111
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004004 499 SAIAFLFWASPTLVSVITF-GVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (779)
Q Consensus 499 ~~~~~~~~~~p~lv~~~~f-~~~~l~-~~~Lt-----~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 571 (779)
.+..+.... ....++.+ +.+.+. .+.+. ++.+..++++...+..|+..+...+..+.++.+|.+||.++++
T Consensus 1134 ~wl~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~ 1211 (1495)
T PLN03232 1134 RWLTIRLET--LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211 (1495)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111110000 01111112 222222 22221 2233335566677888999999999999999999999999998
Q ss_pred cccCCCCC--CCCC--CCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 572 EDNQKKPI--TEPT--SKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 572 ~~e~~~~~--~~~~--~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.|++.+.. ...+ ..+.++.|+++|++|+|++ + .+++|+ |+||+|+|||++||||+||||||||+++|+|++
T Consensus 1212 ~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~---~-~~~vL~-~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1212 LPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRP---G-LPPVLH-GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred CCccccccccCCCCCCCCCCCCcEEEEEEEEEECC---C-CCcccc-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 65443221 1111 1123457999999999965 2 357999 999999999999999999999999999999999
Q ss_pred cCCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccc
Q 004004 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714 (779)
Q Consensus 648 ~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (779)
+|++| +|.++| +++||||+|.+|+|||||||.+++++++++.+++++.|+|+++++.+|+|+||+|
T Consensus 1287 ~p~~G-~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v 1365 (1495)
T PLN03232 1287 ELEKG-RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365 (1495)
T ss_pred cCCCc-eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCcee
Confidence 99999 999998 4899999999999999999999989999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 715 GE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
||+|.||||||||||+||||++++|+|+||||||||||++|++.|. +.++...+ .-++.|+|
T Consensus 1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~~~~TvI~IAH 1428 (1495)
T PLN03232 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ-RTIREEFKSCTMLVIAH 1428 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999998774 44554433 23456666
No 36
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-59 Score=553.76 Aligned_cols=424 Identities=22% Similarity=0.259 Sum_probs=340.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 004004 333 LTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYK 411 (779)
Q Consensus 333 l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~ 411 (779)
+....|.+...|...++|......+.+|-..+-... .+|++.+.|+.|++++.+.+.. +..+......++.++++-+.
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778889999999998888888766654333 4599999999999999998742 32222333333333333332
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 004004 412 NLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491 (779)
Q Consensus 412 ~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l 491 (779)
.+|..+++.+...+++......+++.+.+...+.+++..+.-+...|.+.++|++-.|+-|+...++..+.-+.-.|.-
T Consensus 169 -~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~g 247 (1228)
T KOG0055|consen 169 -YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFG 247 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888888888999999999999999999999999999999999999999988777766544444433
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 492 KKYLYTCSAIAFL--FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEF 569 (779)
Q Consensus 492 ~~~~~~~~~~~~~--~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~f 569 (779)
.+......+.... ++.-......++||..++..+..++|++++.+...-+-...+.+....+..+.+++++..+|.+.
T Consensus 248 i~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~ 327 (1228)
T KOG0055|consen 248 IKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFET 327 (1228)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHH
Confidence 3333333322211 12222334456788788888889999998887666566667788888899999999999999999
Q ss_pred hccccCCC-CCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 570 IKEDNQKK-PITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 570 L~~~e~~~-~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..+..+ ...+ ......++.|+++|++|+||. .++.++|+ ++||+|++|+.||+||||||||||++++|.|+|
T Consensus 328 i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPs---Rpdv~Il~-g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy 403 (1228)
T KOG0055|consen 328 IDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPS---RPDVKILK-GVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY 403 (1228)
T ss_pred hcCCCCCCcccccCCcccccccceEEEEEEecCCC---CCcchhhC-CeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 98654322 2211 223335678999999999998 45668999 999999999999999999999999999999999
Q ss_pred cCCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCcc
Q 004004 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 648 ~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
+|++| +|.++| +|+.|+|+|.+|++||+|||.||+| .++++.+++.+.++.++++..||+|++|.
T Consensus 404 dP~~G-~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 404 DPTSG-EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred CCCCc-eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 99999 999998 4999999999999999999999996 57899999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
+||+|..||||||||||||||+.+||+||||||||||||+++|+.+ ++++
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~AL 532 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEAL 532 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999999754 3344
No 37
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.6e-57 Score=574.06 Aligned_cols=420 Identities=17% Similarity=0.170 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004004 350 RSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST 425 (779)
Q Consensus 350 R~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ 425 (779)
...+...+|++.++.+.. ..++|+++|++++|++.+.+.+. .+..+....+.++.++++++.... +..++.+.+.
T Consensus 1030 ~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~ 1108 (1560)
T PTZ00243 1030 SRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCG 1108 (1560)
T ss_pred HHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345567788888888753 34999999999999999999764 345555555555555554443222 3222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004004 426 IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL- 504 (779)
Q Consensus 426 ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~- 504 (779)
++...+...+.+..++.++.....++...+.++|.++|+++||.|+.|+.+.++..+.-+...+...+......+....
T Consensus 1109 ~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~ 1188 (1560)
T PTZ00243 1109 YLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRV 1188 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344455666666666667777888899999999999999999999988887654433332221111111111111
Q ss_pred HH-HHHHHHHHHHHHHHH--HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-C--
Q 004004 505 FW-ASPTLVSVITFGVCI--LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK-P-- 578 (779)
Q Consensus 505 ~~-~~p~lv~~~~f~~~~--l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~-~-- 578 (779)
.. .....+.++.++++. ...+.+++|.+..++.+...+..|+..+...+..+.++++|++||.++++..+.++ .
T Consensus 1189 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~ 1268 (1560)
T PTZ00243 1189 EFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPEL 1268 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 11 111111122222222 22345789988888888888999999999999999999999999999996322110 0
Q ss_pred ------------------------CCCC----CCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEc
Q 004004 579 ------------------------ITEP----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCG 630 (779)
Q Consensus 579 ------------------------~~~~----~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG 630 (779)
.... +..+.++.|+|+|++|+|++ ..+++|+ |+||+|++||++||||
T Consensus 1269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~----~~~~vL~-~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1269 DEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE----GLPLVLR-GVSFRIAPREKVGIVG 1343 (1560)
T ss_pred cccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCC----CCCceee-cceEEECCCCEEEEEC
Confidence 0000 01112357999999999975 2356999 9999999999999999
Q ss_pred CCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHc
Q 004004 631 SVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (779)
Q Consensus 631 ~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac 697 (779)
+||||||||+++|+|+++|.+| +|.++| .++||||+|.||+|||||||..+.++++++.+++++.|
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELV 1422 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHC
Confidence 9999999999999999999999 999998 48999999999999999999988889999999999999
Q ss_pred cchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHh
Q 004004 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSI 775 (779)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~-adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~ 775 (779)
+|+++++.+|+|+||+|||+|.||||||||||+||||++++ |+|+||||||||||++|++.|. +.|+...++ -++.|
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~I 1501 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITI 1501 (1560)
T ss_pred CChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEE
Confidence 99999999999999999999999999999999999999996 8999999999999999999874 445544432 34556
Q ss_pred cc
Q 004004 776 NH 777 (779)
Q Consensus 776 ~~ 777 (779)
+|
T Consensus 1502 AH 1503 (1560)
T PTZ00243 1502 AH 1503 (1560)
T ss_pred ec
Confidence 66
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-56 Score=491.04 Aligned_cols=497 Identities=19% Similarity=0.244 Sum_probs=348.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH-------HHHHHHHHHHHHH
Q 004004 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASV-------FLFAKTVESLTQR 336 (779)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~-------l~~~~~~~~l~~~ 336 (779)
++++.+.+ .|+.+.++++++++..+.+...-.+-+++|....-... ......++-+++ -.++..+|.+..|
T Consensus 6 p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~-~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH 83 (573)
T COG4987 6 PYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGL-AYIFNVMLPSAGVRGLAILRTAARYVERLVSH 83 (573)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555 77778877777777766665555555666654322110 001111111111 1222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--C-ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 004004 337 QWYFGANRIGIRVRSALTVLIYKRSMAIKFAG--P-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVI--LYK 411 (779)
Q Consensus 337 ~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~--~-~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~l--L~~ 411 (779)
....++-+.++..+|+|....++.. + .+||++|++..|++.+++.+......|...+-++.++.+ -+.
T Consensus 84 -------~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~ 156 (573)
T COG4987 84 -------DATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFF 156 (573)
T ss_pred -------HHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3455777788889999999887753 2 999999999999999999987766666555444333332 244
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 004004 412 NLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSL 491 (779)
Q Consensus 412 ~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l 491 (779)
.++ .+.+.++...++.+.+...+.+.-++..++..+.+...-+.+.|.+.|+...+++|.++.+.+.++..-+.-.+.-
T Consensus 157 ~~~-~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q 235 (573)
T COG4987 157 SIP-LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQ 235 (573)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 455 4555555444445555555666667777777777788888999999999999999999999887765322111111
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhcCCcC-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 004004 492 KKYLYTCSAIAFLFWA-SPTLVS-VITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNLP-ELISMIAQTKVSLYRIQ 567 (779)
Q Consensus 492 ~~~~~~~~~~~~~~~~-~p~lv~-~~~f~~~~l~~~~Lt-~g~vft~lal~~~l~~pl~~lp-~~i~~~~~a~vS~~RI~ 567 (779)
++.........+.... ....++ .+.+.++..-.|..+ +..+...+..|..+ ++...+. .......|+.-|..|+.
T Consensus 236 ~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~ 314 (573)
T COG4987 236 RKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLN 314 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHh
Confidence 2222222222222111 111111 112222222234444 23222222223322 3333333 77888999999999999
Q ss_pred HHhccccCCCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 568 EFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 568 ~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+.++++++.....+.... .+..++++|++|+|++ .+.++|+ |+||++++||++||+|+||||||||+++|.|-+
T Consensus 315 ~i~~q~~e~~~~~~~~~~-~~~~l~~~~vsF~y~~----~~~~~L~-~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 315 DILDQKPEVTFPDEQTAT-TGQALELRNVSFTYPG----QQTKALK-NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred hhccCCcccCCCccccCC-ccceeeeccceeecCC----Cccchhh-ccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 999877654433111111 1227999999999986 3568999 999999999999999999999999999999999
Q ss_pred cCCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCcc
Q 004004 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 648 ~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
+|++| +|..+| .+++++|.+.+|++|+|||+.+++| .++|+..++++..+|++.++..|+|++|.
T Consensus 389 ~~~~G-~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 389 DPQQG-SITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred CCCCC-eeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 99999 999998 4899999999999999999999987 58899999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhccc
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINHI 778 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~~ 778 (779)
+||+|.+||||||||++|||++++|++++||||||.+||+.||++|.+-....+=.+-+..|+|.
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHr 532 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR 532 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecc
Confidence 99999999999999999999999999999999999999999999998876666556667778873
No 39
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.8e-56 Score=559.96 Aligned_cols=494 Identities=15% Similarity=0.137 Sum_probs=366.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (779)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~l 349 (779)
.+.+++.++++.++.++..++..+.|++++.++|.+...+ .... +++.+++..++..++.....+...+++.++
T Consensus 55 ~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 128 (1466)
T PTZ00265 55 PASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVND----IIFSLVLIGIFQFILSFISSFCMDVVTTKI 128 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999999999999999999764222 1111 111122222223333333344455677777
Q ss_pred HHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004004 350 RSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST 425 (779)
Q Consensus 350 R~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ 425 (779)
...++..+|+|.++++.. ..++|++.+.++.|++.+.+.+. .+..+...++.++.++++++. +.|..+++.++++
T Consensus 129 ~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~l~~~ 207 (1466)
T PTZ00265 129 LKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCITCVF 207 (1466)
T ss_pred HHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 777778889999988743 34789999999999999998764 355555555555555555443 3435556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 426 IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505 (779)
Q Consensus 426 ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~ 505 (779)
++++++...+.++.++..++.++..++..+.+.|.++||++||.|+.|+.+.+++++..+...+...+.....+....+.
T Consensus 208 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~ 287 (1466)
T PTZ00265 208 PLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMI 287 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888888888888999999999999999999999999988887654443333333222222211111
Q ss_pred HH--HHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 004004 506 WA--SPTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (779)
Q Consensus 506 ~~--~p~lv~~~~f~~~~l~~~--------~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (779)
.. ....+.++++|.+.+..+ .+++|.+++++........++..+...+..+.++.+|.+||.++++.++.
T Consensus 288 ~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~ 367 (1466)
T PTZ00265 288 NGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPL 367 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 11 112334556788777654 58889888876555444455566666788999999999999999987543
Q ss_pred CCCCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCe
Q 004004 576 KKPITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (779)
Q Consensus 576 ~~~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~ 654 (779)
.++..+ ...+ ....|+++|++|+|+. ..+.++|+ |+||+|++||++|||||+|||||||+++|+|+++|++| +
T Consensus 368 ~~~~~~~~~~~-~~~~I~~~nVsf~Y~~---~~~~~vL~-~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~ 441 (1466)
T PTZ00265 368 VENNDDGKKLK-DIKKIQFKNVRFHYDT---RKDVEIYK-DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG-D 441 (1466)
T ss_pred CCCCCCCccCC-CCCcEEEEEEEEEcCC---CCCCceec-cceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC-e
Confidence 221111 1111 1236999999999985 22357999 99999999999999999999999999999999999999 9
Q ss_pred EEEc-C-------------eEEEEccccccCCCcHHHHhccCCC------------------------------------
Q 004004 655 IKVH-G-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------------ 684 (779)
Q Consensus 655 I~i~-g-------------~iayV~Q~pwI~ngTIreNIlfG~~------------------------------------ 684 (779)
|.++ | +|+||+|+|.+|++||+|||.+|.+
T Consensus 442 I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 9994 4 3899999999999999999999741
Q ss_pred ----------------------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 004004 685 ----------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (779)
Q Consensus 685 ----------------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~ 742 (779)
.++++..++++.++++++++.||+|++|.+|++|.+|||||||||+||||++++|+|+
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 3457788899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHhHHHH---HHHhHhcc
Q 004004 743 IFDDPFSAVDAHTGTHLFKARTFSLFH---QLLFSINH 777 (779)
Q Consensus 743 LLDDp~SALDa~t~~~If~~~i~g~L~---~~~~~~~~ 777 (779)
||||||||||+++++.|.+ .+....+ .-++.|+|
T Consensus 602 lLDEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsH 638 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAH 638 (1466)
T ss_pred EEeCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeC
Confidence 9999999999999988764 4444432 34556666
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.2e-56 Score=484.91 Aligned_cols=483 Identities=22% Similarity=0.257 Sum_probs=382.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (779)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (779)
.....+....+++.++..+++..+-.++.+++|+.+-++-|.+-... +.+ ....+.+.....+.+..+.+....+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~--s~~-TLv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSR--SVP-TLVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCC--Ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888899999999999999999999999887654 222 233344444444555566665566678
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLGAAP 417 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~~~~sG~ivnlms~Dv~~i~~~~~-----~~~~~~~~pl~i~~~l~lL~~~lg~~~ 417 (779)
.|+|.++...|...+|.-+++.+...+..|+-..-+ .|.+.+..|+. -+.+.--.|+.+.+ ++++.-.+| +.
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG-~~ 164 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLG-LI 164 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHH-HH
Confidence 899999999999999999976665555444333333 39999999874 23344345655443 344555678 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (779)
Q Consensus 418 ~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (779)
+++|.++++.+.++|-...++ --++-.+..-+|........+|.++|+.+|......+++.+.....+++.......
T Consensus 165 a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 777766666666666665543 34455677788889999999999999999999999999988776666655443332
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 004004 498 CSAIAFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (779)
Q Consensus 498 ~~~~~~~~~~--~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (779)
........=. .-.-..++..|+|+++++++|+|.+++.-.+....-.|+......+.++..++.|.+|++++|.+.+.
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2221111101 11223456788999999999999999998888888899999999999999999999999999987554
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
..+....| ..++.+.++++++.-|. .++|+++ ++||++++||-++|+||||||||||.++|.|-++|++| +|
T Consensus 322 ~~~~m~LP--~P~g~L~Ve~l~~~PPg----~~~pil~-~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G-~V 393 (580)
T COG4618 322 AAERMPLP--APQGALSVERLTAAPPG----QKKPILK-GISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-SV 393 (580)
T ss_pred ccCCCCCC--CCCceeeEeeeeecCCC----CCCccee-cceeEecCCceEEEECCCCccHHHHHHHHHcccccCCC-cE
Confidence 43333333 33567999999996654 5689999 99999999999999999999999999999999999999 99
Q ss_pred EEcC-------------eEEEEccccccCCCcHHHHh-ccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 656 KVHG-------------KKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 656 ~i~g-------------~iayV~Q~pwI~ngTIreNI-lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
++|| +|+|.||+.-||.|||+||| .|+.+.|+++.-++.++++.||-|-.||+||||.|||+|.+|
T Consensus 394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~L 473 (580)
T COG4618 394 RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATL 473 (580)
T ss_pred EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCC
Confidence 9998 69999999999999999999 599899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||||||||+||||+|.||.+++||||-|+||.+-|+.+.+.
T Consensus 474 SgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999887654
No 41
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-58 Score=495.68 Aligned_cols=469 Identities=16% Similarity=0.239 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 280 NAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH-YGLVLASVFLFAKTV--ESLTQRQWYFGANRIGIRVRSALTVL 356 (779)
Q Consensus 280 ~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~-~g~~l~~~l~~~~~~--~~l~~~~~~~~~~r~~~~lR~~L~~~ 356 (779)
..++.++.-++....|.+.+.++|.+..+. .+.+ ..+.++...++.... ..+......|.--++..-.-..+-..
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~--~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~ 297 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPD--TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETE 297 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcc--hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHH
Confidence 344444555666677999999999887554 2222 222222222221110 01111111111011111112244567
Q ss_pred HHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004004 357 IYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (779)
Q Consensus 357 iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~ 432 (779)
+|+|.+.+|.. .|.+||++..|......+. +..+ ..++-...+.++++++.++....++..++.++.+.+...+.
T Consensus 298 lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 298 LFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 78888888764 5699999999987666655 3333 34555556677888777777677666666666666655566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (779)
Q Consensus 433 ~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (779)
..+..+..++++++..+-.+--..-.+.+-|.+++|.|+.|+. +.+.|.+..+.|.+.+....++....+.+....
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 6666777778877776666666677899999999999998875 444455566666665444433333222221111
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC-CCCCCC
Q 004004 509 PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE-PTSKAS 587 (779)
Q Consensus 509 p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~-~~~~~~ 587 (779)
+.....+.+|.+..+.+|+|...-+..++-.+..|++.+.....+++...+-++|+.+.++++++..+... .|....
T Consensus 457 --ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~ 534 (790)
T KOG0056|consen 457 --LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVT 534 (790)
T ss_pred --HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCcccc
Confidence 12222344566667889999999999999999999999999999999999999999999987654333222 333345
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
++.|+|+|++|+|++ ++|+|+ ||||+++||+.+|+|||||+||||+++++.++++..+| +|.++|
T Consensus 535 ~G~i~fsnvtF~Y~p-----~k~vl~-disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDP-----GKPVLS-DISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQ 607 (790)
T ss_pred CCeEEEEEeEEecCC-----CCceee-cceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHH
Confidence 678999999999986 589999 99999999999999999999999999999999999999 999999
Q ss_pred -----eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 -----~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
+||.||||..+||+||-+||.||+| ..+|+..++.+|+++++-|-++|+|++|.+||||..||||+|||+|+||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 4999999999999999999999997 5678889999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If 760 (779)
+++++|.|++|||+|||||.+||++|-
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQ 714 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQ 714 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHH
Confidence 999999999999999999999999863
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-54 Score=504.72 Aligned_cols=481 Identities=15% Similarity=0.163 Sum_probs=334.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 265 LPQVIIHAVWKSLALNAAFAGVNTIASYI-GPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (779)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (779)
+++.+++.+++.++...++.++..++... .|++.+.++|...+.. .. ...+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~----~~-~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL----LV-LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----hH-HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 56778888999999999999988888877 4778788888653211 11 11111111111122222 222344
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
+++.++...++..+|+|.++++.. .+++|+++|++++|++.+..++..+..++...+.+++++++++. +.|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~-~~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAW-LSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 566667777788889999988753 45899999999999999998765566677777777666665554 33355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKLLRLREIERDSLKKYLYTC 498 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~--wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (779)
.++++++.+++...+.++.++..++.++..+++.+.++|.++|++++++.+ .++.+.+++++..++-.+...+.....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 555556666667777888888888889999999999999999999997432 223444444443222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 004004 499 SAIAFLFWASPTLVSVITFGVCILLKTP---LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (779)
Q Consensus 499 ~~~~~~~~~~p~lv~~~~f~~~~l~~~~---Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (779)
...... . .++..+.++.+.+.++. .+.+.+..+..+...+..|+..+...+..+.+++++.+|+.++++.++.
T Consensus 233 ~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 233 LSAVNW--S--NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHH--H--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 111111 0 11111122222222221 2233333333333346789999999999999999999999999865432
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
++.....+. +....++++|++|+|++ ++++|+ |+||+|++||++||+||+|||||||+++|+|+++|.+| +|
T Consensus 309 ~~~~~~~~~-~~~~~i~~~~v~f~y~~-----~~~~l~-~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G-~i 380 (547)
T PRK10522 309 AEFPRPQAF-PDWQTLELRNVTFAYQD-----NGFSVG-PINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG-EI 380 (547)
T ss_pred ccccccccc-CcCceEEEEEEEEEeCC-----CCeEEe-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EE
Confidence 211111111 11246999999999974 246899 99999999999999999999999999999999999999 99
Q ss_pred EEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 656 ~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++| +++||+|+|++|++|++|| +.+.++++.+++++.+++.++++. |+|. ++|.+||
T Consensus 381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LS 451 (547)
T PRK10522 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLS 451 (547)
T ss_pred EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCC
Confidence 9987 4899999999999999999 556778888889999888877753 4442 2589999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH---HHHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH---QLLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~---~~~~~~~~ 777 (779)
|||||||+||||++++|+++|||||||+||+++++.+.+. +...++ .-++.|+|
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~-l~~~~~~~~~tvi~itH 508 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV-LLPLLQEMGKTIFAISH 508 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEEe
Confidence 9999999999999999999999999999999999988765 443332 33455565
No 43
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-54 Score=549.14 Aligned_cols=423 Identities=18% Similarity=0.195 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~---~~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l 419 (779)
+.+.+.-..+...++++.++.+. ...++|+++|+++.|++.+.+.+. .+..+....+.+++.+++++...+ +.++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p-~l~l 1029 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP-YIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44555556666777888888765 345899999999999999998764 345555555555555555544333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (779)
Q Consensus 420 ~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (779)
+.+.++++.+.+..++.+..++.++.....++...+...|.++|+.+||.|++|+.|.++..+.-+...+..........
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32323333334444555555666666777788888999999999999999999999998887654432211111111111
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 500 AIAFLF-WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 500 ~~~~~~-~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
+..... .....++..+ ....+.....++|.+..++++...+..++..+...+..+..+.+|.+||.+|++.+++.+.
T Consensus 1110 wl~~~~~~i~~~~~~~~--~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAV--TFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 110000 0000011111 1111112234566666666677778888998889999999999999999999976543221
Q ss_pred CCC------------------CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHH
Q 004004 579 ITE------------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL 640 (779)
Q Consensus 579 ~~~------------------~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL 640 (779)
..+ .+..+..+.|+++|++|+|++ ..+++|+ |+||+|++||++||||++|||||||+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~----~~~~vL~-~is~~I~~GekvaIvGrSGsGKSTLl 1262 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE----AGRAVLQ-DLSFSVEGGQRVGLLGRTGSGKSTLL 1262 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC----CCcceee-ccEEEEcCCCEEEEECCCCCCHHHHH
Confidence 100 011123467999999999975 2468999 99999999999999999999999999
Q ss_pred HHHhccccCCCCCeEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhcc
Q 004004 641 SSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWA 707 (779)
Q Consensus 641 ~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp 707 (779)
++|+|+++ .+| +|.++| +++||||+|.||+|||||||..+.++++++.+++++.|+|.++++.+|
T Consensus 1263 ~lL~rl~~-~~G-~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271 1263 SALLRLLS-TEG-EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred HHHhhhcC-CCc-EEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 99999998 799 999998 489999999999999999998777889999999999999999999999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 708 ~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
+|+||+|||+|.||||||||||+||||++++|+|+|||||||+||++|++.|.+ .|+...+ .-+..|+|
T Consensus 1341 ~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaH 1410 (1490)
T TIGR01271 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEH 1410 (1490)
T ss_pred cccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEec
Confidence 999999999999999999999999999999999999999999999999988754 3444333 23445665
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.6e-54 Score=509.35 Aligned_cols=487 Identities=18% Similarity=0.162 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (779)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~ 355 (779)
.++..+++.++.+++....|++++.++|.+.+.+...+......+++.+++..++..+. .|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI----KYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 56777888888999999999999999998765431111111122222223333333332 23345556666666666
Q ss_pred HHHHHHhcc----cC--CCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004004 356 LIYKRSMAI----KF--AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (779)
Q Consensus 356 ~iy~K~L~l----s~--~~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~ 428 (779)
.++++.++. +. ...++|++.+++++|++.+.+.+. .+..+...++.++.+++.++..++|..+++.++..++.
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~ 252 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFAT 252 (659)
T ss_pred HHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 666666543 21 112589999999999999999775 35566666777777777777667755555556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (779)
Q Consensus 429 ~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (779)
+.+...+.++..+..++.++..++.....+|.++|+++||.|+.|+...+++++.-++-.+...+.....+....+....
T Consensus 253 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 332 (659)
T TIGR00954 253 GVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIV 332 (659)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77888889999999999999999999999999999999999999998887776654443443333333332222221111
Q ss_pred ----HHHHHHHHHHHHHHh-c----CCcCHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 004004 509 ----PTLVSVITFGVCILL-K----TPLTSGAVLS-ALA---TFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (779)
Q Consensus 509 ----p~lv~~~~f~~~~l~-~----~~Lt~g~vft-~la---l~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (779)
...+..+..+..++. . +.+|.|..+. +++ ++..+..|+..+.+.+..+.++.++.+|+.++++.++.
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 333 AKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222232332 2 6789887655 333 46677899999999999999999999999999975322
Q ss_pred CC------CCC-C-----------------CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcC
Q 004004 576 KK------PIT-E-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGS 631 (779)
Q Consensus 576 ~~------~~~-~-----------------~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~ 631 (779)
.+ +.. + .......+.|+++|++|+|++ ++++++ ++||+|++||+++|+||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~-----~~~il~-~isl~i~~Ge~~~IvG~ 486 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN-----GDVLIE-SLSFEVPSGNHLLICGP 486 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC-----CCeeee-cceEEECCCCEEEEECC
Confidence 10 000 0 000112246999999999964 246899 99999999999999999
Q ss_pred CCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEccccccCCCcHHHHhccCC--------CCCHHHHHHHHHHccchH
Q 004004 632 VGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCALNQ 701 (779)
Q Consensus 632 sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~pwI~ngTIreNIlfG~--------~~d~~~y~~vl~ac~L~~ 701 (779)
+|||||||+++|.|++++.+| ++.+++ +++||+|+|+++++|++|||.++. +.++++.+++++.+++++
T Consensus 487 nGsGKSTLl~lL~Gl~~~~~G-~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~ 565 (659)
T TIGR00954 487 NGCGKSSLFRILGELWPVYGG-RLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH 565 (659)
T ss_pred CCCCHHHHHHHHhCCCCCCCC-eEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH
Confidence 999999999999999999999 998864 699999999999999999999974 245778899999999998
Q ss_pred HHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 702 di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
.++. |.|++|..+ .|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ .. ...-++.|+|
T Consensus 566 ~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~-~~~tvI~isH 637 (659)
T TIGR00954 566 ILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE-FGITLFSVSH 637 (659)
T ss_pred HHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH-cCCEEEEEeC
Confidence 8887 999999987 57799999999999999999999999999999999999999887643 22 1233455555
No 45
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-52 Score=442.02 Aligned_cols=402 Identities=21% Similarity=0.288 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004004 351 SALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTI 426 (779)
Q Consensus 351 ~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~l 426 (779)
..+....|.|.++|+.. .+.+|.+-.-+..-.+.|+...++ +..+....+++.+..+++++..||+.+...++.++
T Consensus 15 r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~ 94 (497)
T COG5265 15 RVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVI 94 (497)
T ss_pred HHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 34555667888877753 347777666666666667776654 45566677899999999999999777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 004004 427 FVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI----ERDSLKKYLYTCSAIA 502 (779)
Q Consensus 427 l~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~----E~~~l~~~~~~~~~~~ 502 (779)
+...+......+.-.++++..++-.+......+.|-|..++|.|+-|+.+.++.++..+. +.+.......+.....
T Consensus 95 lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~ 174 (497)
T COG5265 95 LYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQT 174 (497)
T ss_pred HHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 666666666666667777766666666677889999999999999998887776554333 3322222222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC-
Q 004004 503 FLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE- 581 (779)
Q Consensus 503 ~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~- 581 (779)
.++. ..+....+.+..-+..+.+|.|.+...-++...+..|+..+......+.|++..+++..+.+..+....+..+
T Consensus 175 ~I~~--~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda 252 (497)
T COG5265 175 AIFS--TGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDA 252 (497)
T ss_pred HHHH--HHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCC
Confidence 1111 1122233334444567899999999999999999999999999999999999999999999986644333322
Q ss_pred CCCC-CCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe
Q 004004 582 PTSK-ASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660 (779)
Q Consensus 582 ~~~~-~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~ 660 (779)
.+.. ...+.|.|+|++|.|++ ..|+|+ ++||++++|+++||||++|+||||+++++.++|++++| .|.++|+
T Consensus 253 ~~L~~~~~g~v~F~~V~F~y~~-----~r~iL~-~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~I~id~q 325 (497)
T COG5265 253 PPLWPVRLGAVAFINVSFAYDP-----RRPILN-GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-SITIDGQ 325 (497)
T ss_pred ccccccccceEEEEEEEeeccc-----cchhhc-CccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-eEEEcch
Confidence 2222 33467999999999986 478999 99999999999999999999999999999999999999 9999994
Q ss_pred -------------EEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 661 -------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 661 -------------iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
||.|||+.-|||+||..||.+|+| ..+++..++.+++++++.|+.+|+|++|.|||||-.||||+|
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 899999999999999999999997 578889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||+|+||+++++|+|++|||+|||||.|||+.|-.
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 99999999999999999999999999999998643
No 46
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-49 Score=483.79 Aligned_cols=417 Identities=20% Similarity=0.242 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l 419 (779)
..+++.-..|-..++++.+|-|.. ..++|.|+|++|.|++.+++.+.. +..+....++++..++++-.... +..+
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P-~fli 962 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP-WFLI 962 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHH
Confidence 445666666667777777776643 348999999999999999987654 44444555555555444443333 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (779)
Q Consensus 420 ~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (779)
+.+.+.++...+..++.+..+...+-....++--.+..+|.++|+-+|+.|+.|+.|.++....-+...+.. +....+
T Consensus 963 ~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~--f~~~~a 1040 (1381)
T KOG0054|consen 963 AIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF--FLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH--HHHHHH
Confidence 444444555555555555555555444455666678899999999999999999999988876554433221 111111
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 004004 500 AIAFLFW---ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (779)
Q Consensus 500 ~~~~~~~---~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 576 (779)
.-.+..+ ....++..+++.+.+..++..++|.+--++++.-.+..-+..+......+-...+|.+||.+|.+.|++.
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 1111111 1111222222222222223377999988898888888888899999999999999999999999965442
Q ss_pred CCCCC----CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 577 KPITE----PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 577 ~~~~~----~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+...+ .+..+.++.|+|+|++.+|.+ + .+++|+ +|||+|+|||||+|||++|||||||+++|.|..+|.+|
T Consensus 1121 p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp---~-lp~VLk-~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1121 PLEIEESRPPPSWPSKGEIEFEDLSLRYRP---N-LPLVLK-GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCCcCCCCCCCCCCCCeEEEEEeEEEeCC---C-Ccchhc-CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 21111 233456789999999999987 3 478999 99999999999999999999999999999999999999
Q ss_pred CeEEEcC-------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 653 AAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 653 ~~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
+|.+|| +++.+||||.||+||+|.|+---.+++|++++++++.|+|.+.++++|+|+|++|.|+|.
T Consensus 1196 -~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1196 -EILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred -eEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 999998 589999999999999999999888999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ 770 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~ 770 (779)
|+|-||||-++||||++++++|++|||+|++||.+|..- .++.|+...++
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~l-IQ~tIR~~F~d 1324 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL-IQKTIREEFKD 1324 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHH-HHHHHHHHhcC
Confidence 999999999999999999999999999999999999864 45666665554
No 47
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=374.48 Aligned_cols=231 Identities=20% Similarity=0.278 Sum_probs=188.2
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEecccc
Q 004004 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDARE 604 (779)
Q Consensus 525 ~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~ 604 (779)
+++++.++|+.+++++.+..|+..+|..... ..|+.+|+..++.+..... ...+..+.|+++|++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~nls~~y~~-- 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLK-EDFNHANVFEIRNFNFWYMN-- 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhccccccccccccc-CCCCcCceEEEEeeEEEecC--
Confidence 5689999999999999999999887765443 5689999877664331111 11233467999999999974
Q ss_pred ccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC---------------eEEEE
Q 004004 605 ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---------------KKAYV 664 (779)
Q Consensus 605 ~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---------------~iayV 664 (779)
...++|+ |+||+|++||+++|+|++|||||||+++|+|+++ |.+| +|.++| .++||
T Consensus 93 --~~~~~L~-~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G-~I~idG~~i~~~~~~~~~lr~~i~~v 168 (329)
T PRK14257 93 --RTKHVLH-DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEG-EIYFLGTNTRSKKISSLELRTRIGMV 168 (329)
T ss_pred --CCceeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHhhhccEEEE
Confidence 2356899 9999999999999999999999999999999997 4689 887654 48999
Q ss_pred ccccccCCCcHHHHhccCCCC---C-HH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 665 PQSSWIQTGTIRENILFGKDM---R-QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 665 ~Q~pwI~ngTIreNIlfG~~~---d-~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
||+||+|++||+|||.|+..+ + ++ .|+++++.|+|.+++ ++.++++|.+||||||||++||||+|
T Consensus 169 ~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~ 241 (329)
T PRK14257 169 FQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIA 241 (329)
T ss_pred ecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999987532 2 22 377888999886654 47899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
++|+|+||||||||||+++.++ +.++|.++.++ -++.|+|
T Consensus 242 ~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH 282 (329)
T PRK14257 242 LEPEVLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTH 282 (329)
T ss_pred hCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 9999999999999999999988 67788776543 2244444
No 48
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2e-36 Score=343.10 Aligned_cols=425 Identities=18% Similarity=0.202 Sum_probs=297.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--ChH------HHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004004 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSG------IIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVIL 409 (779)
Q Consensus 339 ~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~--~sG------~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL 409 (779)
.+..+++..+.|..|...+.+|-+.-....+ ..| ..=++++.|+..+.+.... ...+....++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999987654333 232 2235788888877765433 334444444555555666
Q ss_pred HHHhhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHH
Q 004004 410 YKNLGA--------------APAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE 475 (779)
Q Consensus 410 ~~~lg~--------------~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~ 475 (779)
|...|. ....+.++-++....+...++|...+...+..+....--....-.-++...|-+|+-|+.
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~ 266 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKV 266 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHH
Confidence 643331 111111111112222223344444333333323323333355677788899999999887
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 476 FLKKLLRLREIERDSLK----KYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPE 551 (779)
Q Consensus 476 f~~~i~~~R~~E~~~l~----~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~ 551 (779)
-++++++.-..=++..+ +...+..+.....+.++++ + ....+-.++.|.++.|.+..+...|+.+...+..+.+
T Consensus 267 Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~-P-~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~ 344 (604)
T COG4178 267 ERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVL-P-ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFID 344 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHH-H-HHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666543222121111 1111111222222222211 1 1112223568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc--CCCCCCC-CCC------CCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeC
Q 004004 552 LISMIAQTKVSLYRIQEFIKEDN--QKKPITE-PTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMK 622 (779)
Q Consensus 552 ~i~~~~~a~vS~~RI~~fL~~~e--~~~~~~~-~~~------~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~ 622 (779)
.+..+.+-+.+..|+.+|-+.-+ ..++... .+. +..+..|+++|++..-++ ..+.++ +.|+++++
T Consensus 345 ~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~-----~~~ll~-~l~~~v~~ 418 (604)
T COG4178 345 NYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD-----GQTLLS-ELNFEVRP 418 (604)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC-----CCeeec-cceeeeCC
Confidence 99999999999999999985422 1011100 000 111467999999998765 347788 99999999
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc-C-eEEEEccccccCCCcHHHHhccCCC---CCHHHHHHHHHHc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYEEVLEGC 697 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~-g-~iayV~Q~pwI~ngTIreNIlfG~~---~d~~~y~~vl~ac 697 (779)
|+.+.|.|+||||||||+++|.|.+|--+| +|... + .+-|+||.|++..||+||-|++.++ ++++.+.++++.|
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G-~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~v 497 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSG-RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCC-ceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHc
Confidence 999999999999999999999999999999 88876 3 3899999999999999999999752 7899999999999
Q ss_pred cchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
+|.+-.+++.+-++ -..-||||||||++.||.++++|++++|||+|||||..++..+++..-..+-.-.++||.|
T Consensus 498 gL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 498 GLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred CcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 99999998765444 6788999999999999999999999999999999999999999886555555667778877
No 49
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-37 Score=332.02 Aligned_cols=165 Identities=27% Similarity=0.349 Sum_probs=152.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|+++|++++|++ ...++|+ |+||+|++||+++|+|++|||||||+++|.|+++ .+| +|.++|
T Consensus 2 ~i~~~nls~~~~~----~~~~~l~-~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G-~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE----GGNAVLE-NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-DIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC----CCCccee-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEhhhCCHHH
Confidence 4899999999964 2356899 9999999999999999999999999999999998 789 999988
Q ss_pred ---eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 ---~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++||||+|++|++|++||+.+..+++++++.++++.++|.+.+..+|+|++|.++|+|.+||||||||++||||++
T Consensus 75 lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 75 WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999754457788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++|+|+||||||++||+++.+.+.+
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~ 179 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRK 179 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHH
Confidence 9999999999999999999976654
No 50
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-37 Score=317.16 Aligned_cols=182 Identities=52% Similarity=0.910 Sum_probs=163.8
Q ss_pred EEEeeeEEEeccccccC--CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 591 IDIEAGEYAWDAREENF--KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~--~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
++++|++++|++ .. ..++++ ++||+|++|++++|+||+|||||||+++|+|+++|.+| +|.++|+++|++|+|
T Consensus 1 l~~~~l~~~~~~---~~~~~~~il~-~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g~i~~~~q~~ 75 (204)
T cd03250 1 ISVEDASFTWDS---GEQETSFTLK-DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPGSIAYVSQEP 75 (204)
T ss_pred CEEeEEEEecCC---CCccccceee-eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcCEEEEEecCc
Confidence 478999999965 11 036899 99999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 004004 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (779)
Q Consensus 669 wI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~ 748 (779)
.++++|++|||.++.++++++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++||||++++|+++||||||
T Consensus 76 ~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 76 WIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred hhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 99999999999998777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 749 SAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 749 SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
++||+++.+.+++..+....++ .++.++|
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh 186 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTH 186 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCEEEEEeC
Confidence 9999999999888776544443 3344444
No 51
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-37 Score=311.88 Aligned_cols=168 Identities=28% Similarity=0.434 Sum_probs=146.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------eE
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------~i 661 (779)
.+++++++.+|+. ..+|+ |+||+|++||+|+|+|||||||||||++|.|+.+|++| +|.++| .+
T Consensus 3 ~l~i~~v~~~f~~------~~vl~-~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G-~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLE-DINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG-EVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeCc------eEEec-cceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCcccCCCCCCE
Confidence 4789999999974 57899 99999999999999999999999999999999999999 999988 48
Q ss_pred EEEccccccCC-CcHHHHhccCCCC-------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 662 AYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 662 ayV~Q~pwI~n-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
+||+|++-++. -||+|||.||-+. .+++.++.++..+|.+.-+..| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999998865 8999999998664 2357888999999988877777 579999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|+..+|+|+||||||||||+.|..++-++.. .+.++ -++.|+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~-~lw~~~~~TvllVTH 189 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELL-RLWEETRKTVLLVTH 189 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHH-HHHHhhCCEEEEEeC
Confidence 9999999999999999999999998876644 33333 3445555
No 52
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.1e-35 Score=313.31 Aligned_cols=190 Identities=38% Similarity=0.633 Sum_probs=164.9
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHH
Q 004004 564 YRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (779)
Q Consensus 564 ~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~i 643 (779)
+.+.+.|+.+..+++.. +..+....|+++|+++.+ .++++ ++||+|++|++++|+|++|||||||+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~nls~~~--------~~vL~-~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 15 EGFGELLEKAKQENNDR--KHSSDDNNLFFSNLCLVG--------APVLK-NINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHHhccccccccc--ccCCCCCeEEEEEEEEec--------cccee-eeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 34556666544322221 222344679999999952 35899 99999999999999999999999999999
Q ss_pred hccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 644 LGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
+|.++|.+| +|.++|.++|++|+++++++|++||+.++...++.++.++++++++.+.++.+|.+++|.+++++.+|||
T Consensus 84 ~Gl~~p~~G-~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEG-KIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCc-EEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 999999999 9999999999999999999999999999866666677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHh
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~ 765 (779)
|||||++||||++++|+++||||||++||+.+.+.+.+.++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~ 204 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC 204 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888776554
No 53
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-35 Score=301.61 Aligned_cols=168 Identities=32% Similarity=0.540 Sum_probs=142.3
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++|+|+. . ++|+ ||||+|++|++++|+||+|||||||+++|+|..+|.+| +|.+.|
T Consensus 3 ~~i~v~nl~v~y~~-----~-~vl~-~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G-~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN-----R-PVLE-DISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG-EIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC-----E-eeee-ccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc-eEEEccccccccccC
Confidence 35899999999975 2 6999 99999999999999999999999999999999999999 999876
Q ss_pred -eEEEEcccc---ccCCCcHHHHhccCCCC-----------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -KKAYVPQSS---WIQTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -~iayV~Q~p---wI~ngTIreNIlfG~~~-----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+||||||.. |=|.-||+|=+.+|... |.++.+++++..++.+.. +..|| .||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~----~LSGG 143 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIG----ELSGG 143 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCccc----ccCcH
Confidence 499999954 77999999999988421 458889999999997443 23454 49999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|+||+-|||||.+|||+++|||||++||+.+++.|++ +...|++ .+.+|+|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~--lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEGKTVLMVTH 197 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH--HHHHHHHCCCEEEEEeC
Confidence 9999999999999999999999999999999998876 3333333 3444554
No 54
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-35 Score=289.75 Aligned_cols=153 Identities=31% Similarity=0.434 Sum_probs=135.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
-|+++|++.+|.+ ..+|+ +||++|++||.++|+|||||||||||+||.|+-++++| +|.++|
T Consensus 2 mi~i~~l~K~fg~------~~VLk-gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLK-GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEeCC------eEEec-CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccchhhHH
Confidence 3789999999975 56899 99999999999999999999999999999999999999 999999
Q ss_pred ----eEEEEccccccC-CCcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSSWIQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~pwI~-ngTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
++|+|+|+.-|| +-|+-|||..+. ..+ +++-.+.++..+|.+-.+..| ..||||||
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQq 142 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQ 142 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHH
Confidence 368999999997 489999999862 122 234456778888988888777 57999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||+||||||.-+|+++|+||||||||++.-..+.+
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999888764
No 55
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.4e-35 Score=299.84 Aligned_cols=164 Identities=40% Similarity=0.757 Sum_probs=152.1
Q ss_pred EEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC------------
Q 004004 592 DIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (779)
Q Consensus 592 ~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------ 659 (779)
.+.|+.|+|+. ..++++ |+||+|++||.++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 2 ~~~~~~~~~~~-----~~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLS-NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG-KVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC-----CCccee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCcccccccccccc
Confidence 57899999975 256899 99999999999999999999999999999999999999 898865
Q ss_pred -----eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 -----~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++|++|+|.+++.|++|||.++.++++++.+++++++++.+.++.+|.|++|.++....+||||||||++||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred hhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 389999999999999999999987777777889999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
++++|+++||||||++||.++.+.+.+.
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~ 182 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQE 182 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHH
Confidence 9999999999999999999999988774
No 56
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-34 Score=297.96 Aligned_cols=166 Identities=31% Similarity=0.419 Sum_probs=153.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ...++++ |+||++++|+.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 2 ~l~~~~l~~~~~~----~~~~~l~-~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP----NLPPVLK-NISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC----CCccccc-ceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhHhCCHHH
Confidence 4889999999974 1246899 99999999999999999999999999999999999999 999877
Q ss_pred ---eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 ---~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|+|.++++|++|||.+..+.++++..++++..++.+.+..+|.|++|..++.+.+||||||||++||||++
T Consensus 76 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 76 LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 38999999999999999999887777778888899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++|+++||||||++||+.+.+.+.+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~ 180 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQK 180 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHH
Confidence 9999999999999999999887654
No 57
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2e-34 Score=301.17 Aligned_cols=166 Identities=29% Similarity=0.399 Sum_probs=150.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+. ...++++ ++||++++||+++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 1 i~~~~l~~~~~~----~~~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP----DGPVILD-NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC----CCcccee-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCeehHhcCHHHH
Confidence 468999999964 1256899 99999999999999999999999999999999999999 999987
Q ss_pred --eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|++++++.|++|||.++.+ .+.++..+.++..++.+.++.+|.|.++....++.+||||||||++||||++
T Consensus 75 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 75 RRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred hhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 3899999999999999999998654 4455666777888888889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
++|+++||||||++||+++.+.+.+.
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~ 180 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRN 180 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 99999999999999999999887654
No 58
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=295.68 Aligned_cols=420 Identities=18% Similarity=0.192 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChHHHH---HHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 004004 336 RQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIII---NMINVDVERIGDFFLY-IHRIWLLPVQVFLALVI 408 (779)
Q Consensus 336 ~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~---~sG~iv---nlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~l 408 (779)
....|...-+..+.|..+..-+|++-++-....+ ..+.|- .+++.|+++....... ...+...|+.++.-.+.
T Consensus 140 a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~ 219 (659)
T KOG0060|consen 140 ALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFR 219 (659)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhH
Confidence 3345566778889999999999888776432111 112222 4788899988775543 34555667777777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHH
Q 004004 409 LYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEA-KDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIE 487 (779)
Q Consensus 409 L~~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~-~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E 487 (779)
++...||+.-...++-.++-..++..+.+-..+...+..+. -|=|. .-+++..|-+.|-+|+-++.-...++..-+.-
T Consensus 220 l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy-~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~L 298 (659)
T KOG0060|consen 220 LFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRY-KHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNL 298 (659)
T ss_pred HhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhh-heeeeeecchhhhhhccCchHHHHHHHHHHHH
Confidence 88777743222222222223344444333332222222222 23332 33467778888999987654433333322222
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 004004 488 RDSLKKYL----YTCSAIAFLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALA----TFRILQEPIYNLPELISMI 556 (779)
Q Consensus 488 ~~~l~~~~----~~~~~~~~~~~~~p~lv~~~~f~~~~l---~~~~Lt~g~vft~la----l~~~l~~pl~~lp~~i~~~ 556 (779)
.+.+++.. .+..+..++-+... +++.+..+.-++ ..+.+++...+.-++ ++..+...+..+......+
T Consensus 299 v~~l~~l~~~r~~l~f~~n~~~Ylg~-ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~l 377 (659)
T KOG0060|consen 299 VQHLRELMSFRFWLGFIDNIFDYLGG-ILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDL 377 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 22222221 11111121111111 111111011011 124577777666542 3444555666777777777
Q ss_pred HHHHHHHHHHHHHhcccc-C-------------CCCCC---C-CC----CCCCCccEEEeeeEEEeccccccCCCccccc
Q 004004 557 AQTKVSLYRIQEFIKEDN-Q-------------KKPIT---E-PT----SKASDVAIDIEAGEYAWDAREENFKKPTIKL 614 (779)
Q Consensus 557 ~~a~vS~~RI~~fL~~~e-~-------------~~~~~---~-~~----~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~ 614 (779)
.+-..-.+||.++.+.-. . ..+.. . .+ ..+.+..|++++++++-|+ + .++|..
T Consensus 378 s~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt---~--g~~lie 452 (659)
T KOG0060|consen 378 SRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPT---N--GDLLIE 452 (659)
T ss_pred HHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCC---C--Cceeee
Confidence 777888899999875210 0 00000 0 11 1234578999999998775 3 444443
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc--C---eEEEEccccccCCCcHHHHhccC-------
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G---KKAYVPQSSWIQTGTIRENILFG------- 682 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~--g---~iayV~Q~pwI~ngTIreNIlfG------- 682 (779)
|+||+|+.|+.+.|+||+|||||||++.+.|.+|..+| ++.-. | .+-|+||.|+.-.||+||-+.|.
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G-~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~ 531 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGG-KLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMD 531 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCC-eEEecccCCCCceEEecCCCCccccchhheeeccCcccccc
Confidence 89999999999999999999999999999999999999 88753 3 38899999999999999999997
Q ss_pred -CCCCHHHHHHHHHHccchHHHhhccCCCCc-cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 683 -KDMRQSFYEEVLEGCALNQDIEMWADGDLS-VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 683 -~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T-~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
+..+++++.+.++-.+|.+-++. .+|.|+ .+=|-+..||+|++||+|.||-+|.+|.+-+|||+|||||.++|..++
T Consensus 532 ~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Y 610 (659)
T KOG0060|consen 532 SKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALY 610 (659)
T ss_pred ccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHH
Confidence 12578899999999999877766 456664 455778899999999999999999999999999999999999999999
Q ss_pred HHHH
Q 004004 761 KART 764 (779)
Q Consensus 761 ~~~i 764 (779)
+.|=
T Consensus 611 r~~r 614 (659)
T KOG0060|consen 611 RKCR 614 (659)
T ss_pred HHHH
Confidence 9764
No 59
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.2e-34 Score=304.55 Aligned_cols=168 Identities=31% Similarity=0.363 Sum_probs=153.4
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
.+.|+++|++++|+. ...++++ ++||+|++|++++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 17 ~~~i~~~~l~~~~~~----~~~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~ 90 (257)
T cd03288 17 GGEIKIHDLCVRYEN----NLKPVLK-HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKLPL 90 (257)
T ss_pred CceEEEEEEEEEeCC----CCCccee-EEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC-eEEECCEEhhhCCH
Confidence 357999999999964 2246899 99999999999999999999999999999999999999 999877
Q ss_pred -----eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 -----~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++||+|+|+++++|++||+......++++++++++..++.+.++.+|.|++|.+++++.+||||||||++||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 389999999999999999998765555677888999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++++|+++||||||++||+++.+.+++
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~ 197 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQK 197 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 999999999999999999998776544
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.8e-34 Score=295.61 Aligned_cols=167 Identities=31% Similarity=0.493 Sum_probs=152.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|+++.|+. ...++++ |+||+|++|++++|+||+|||||||+++|.|+.+|.+| +|.++|
T Consensus 2 ~l~~~~l~~~~~~----~~~~~l~-~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPN----QEIPALD-NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCC----CCccccc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-eEEECCEEhHHCCHHH
Confidence 4789999999964 1246899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 660 ---~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
.++|++|+++++..|++||+.++.+ .++++.++.++.+++.+.++.+|.|++|.+.+...+||||||||++||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 76 LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 3899999999999999999988754 355677889999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
..+|+++||||||++||+.+.+.+.+.
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKER 182 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 999999999999999999999887653
No 61
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-34 Score=298.33 Aligned_cols=169 Identities=28% Similarity=0.438 Sum_probs=153.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ..++++ |+||++++|+.++|+||+|||||||+++|.|+.+|.+| +|.++|
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~-~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLK-DINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG-QILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC-----CCcccc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEeHHHcCHHH
Confidence 4889999999963 246899 99999999999999999999999999999999999999 999887
Q ss_pred ---eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 660 ---~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
.++|++|+++++++|++||+.++.+ ..+++.+++++.+++.+.++.+|.|+++..+.+..+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al 154 (229)
T cd03254 75 LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM 154 (229)
T ss_pred HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH
Confidence 3899999999999999999998764 345677888899999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
+++|+++||||||++||+.+.+.+.+ ++..
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~ 184 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQE-ALEK 184 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHH-HHHH
Confidence 99999999999999999999987654 3443
No 62
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.9e-34 Score=289.74 Aligned_cols=171 Identities=28% Similarity=0.390 Sum_probs=141.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++..|... ....++|+ ++||+|++||.+||+|||||||||||+.|-|.-.|++| .+.++|
T Consensus 2 i~~~~v~k~y~~~--~~~~~~L~-~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G-~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLG--GEKVEALK-DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG-EVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccC--CcceEecc-cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEcCcCCHHHH
Confidence 5688999888651 11246899 99999999999999999999999999999999999999 999988
Q ss_pred ------eEEEEcccccc-CCCcHHHHhcc----CCCC---CHHHHHHHHHHccchHHHh-hccCCCCccccCCCCCCChH
Q 004004 660 ------KKAYVPQSSWI-QTGTIRENILF----GKDM---RQSFYEEVLEGCALNQDIE-MWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ------~iayV~Q~pwI-~ngTIreNIlf----G~~~---d~~~y~~vl~ac~L~~di~-~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+||||+|+..| .+-|++|||.+ .... .+++.++.++..+|.+... ..| ..||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGG 146 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGG 146 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHH
Confidence 38999999986 67899999984 2222 2456777778778876655 444 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+|||||+..+|+|+|.||||++||.+|++.|++- +...-++ -++.|+|
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l-l~~~~~~~g~tii~VTH 201 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL-LRELNKERGKTIIMVTH 201 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH-HHHHHHhcCCEEEEEcC
Confidence 99999999999999999999999999999999998863 3333333 5677777
No 63
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-34 Score=307.55 Aligned_cols=154 Identities=30% Similarity=0.415 Sum_probs=140.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|+++|++.+|++ ..+++ ++||+|++||.++++|||||||||||++|.|+.+|++| +|.++|
T Consensus 3 ~i~l~~v~K~yg~------~~~l~-~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS------FEVLK-DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC------ceeee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhH
Confidence 5899999999975 12899 99999999999999999999999999999999999999 999998
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCCC-------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.||+|+|+.-|+. .||+|||.||... .++|.+++.+..+|++.++..| ..||||||||+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVA 143 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVA 143 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHH
Confidence 4999999999976 5999999998654 2578889999999999998776 689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||||+.++|+++|||||+|+||++....+-.+
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 99999999999999999999999998876554
No 64
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=284.07 Aligned_cols=165 Identities=26% Similarity=0.364 Sum_probs=140.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCC-----CCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~-----G~~I~i~g---- 659 (779)
..++++|+++.|.+ ..+|+ +||++|++++.+|++|||||||||||+++-+..+..+ | +|.++|
T Consensus 6 ~~~~~~~l~~yYg~------~~aL~-~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G-~v~~~g~ni~ 77 (253)
T COG1117 6 PAIEVRDLNLYYGD------KHALK-DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEG-EVLLDGKNIY 77 (253)
T ss_pred ceeEecceeEEECc------hhhhc-cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEE-EEEECCeecc
Confidence 46899999999975 56899 9999999999999999999999999999999988776 6 777777
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCCC---C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
++|.|.|.|--|..||.|||.||... . ++..++.++.++|.+.+.. .+.+.+..|
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~L 150 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGL 150 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCC
Confidence 38999999999999999999999432 1 3557778888888776642 234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
||||+||++||||+.-+|+|+|+||||||||+.+..+|- +.|..+-+
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIE-eLi~eLk~ 197 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE-ELITELKK 197 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999988874 34444433
No 65
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=295.12 Aligned_cols=169 Identities=29% Similarity=0.454 Sum_probs=152.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|++ . ..++++ ++||++++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 1 i~~~~l~~~~~~---~-~~~~l~-~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---D-GPPVLR-DISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---C-Ccccee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC-EEEECCEEhhhCCHHHH
Confidence 468999999964 1 236899 99999999999999999999999999999999999999 999887
Q ss_pred --eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|++++++.|++||+.++.+ .+++++++.++.+.+.+.++.+|.|.++..+.+..+||||||||++||||++
T Consensus 75 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 75 RRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred HhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 2899999999999999999998754 4566778888889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
++|+++||||||++||+.+.+.+.+ ++..
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~-~l~~ 183 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQA-ALER 183 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHH-HHHH
Confidence 9999999999999999999887754 4443
No 66
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-33 Score=293.19 Aligned_cols=164 Identities=34% Similarity=0.552 Sum_probs=149.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. ..++++ ++||+|++|++++|+||+|||||||+++|.|+.+|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~l~-~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLK-DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC-----CCceee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEhhhCCHHHH
Confidence 468999999963 246899 99999999999999999999999999999999999999 999987
Q ss_pred --eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|+++++++|++||+.++.+ .+++..++.++.+++.+.++.+|.|++|.+..+..+||||||||++||||++
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 74 RRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred HhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 2899999999999999999998754 3455667788889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++|+++||||||++||+++.+.+.+
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~ 178 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQA 178 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH
Confidence 9999999999999999999887765
No 67
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-34 Score=295.42 Aligned_cols=157 Identities=27% Similarity=0.372 Sum_probs=133.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|++++++..|... .......++ |+||+|++||..+|+|+||+|||||+++|-++-.|++| +|.++|
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~-~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG-~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALD-DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG-SVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeec-cceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEEcCEecccCChHHH
Confidence 7899999999752 122245788 99999999999999999999999999999999999999 999999
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---CC-HHHHHHHH---HHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---MR-QSFYEEVL---EGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~d-~~~y~~vl---~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
+|++++|++-+++ -|+.|||.|..+ ++ ++..++|. +..+|.+..+..| .+||||||
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQK 147 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQK 147 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchh
Confidence 3999999999998 999999999644 22 33344444 4456665444444 79999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||+||||+..+|+|+|.||||||||++|.++|.+
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~ 182 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILE 182 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 99999999999999999999999999999999765
No 68
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.2e-33 Score=292.20 Aligned_cols=166 Identities=34% Similarity=0.474 Sum_probs=150.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|+. ..+.++++ ++||++++|+.++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~i~~l~~~~~~---~~~~~~l~-~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPS---RPDVPILK-GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCC---CCCcccee-ceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC-EEEECCEehhhcCHHHH
Confidence 468999999964 22346899 99999999999999999999999999999999999999 999887
Q ss_pred --eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|++++++.|++|||.++.+ ..+++.++.++.+++.+.++.+|.|.++..+....+||||||||++||||++
T Consensus 76 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 76 RSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred HhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh
Confidence 3899999999999999999998754 3455677788888999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.+|+++||||||++||+++.+.+.+
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~ 180 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQE 180 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHH
Confidence 9999999999999999999987655
No 69
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.3e-33 Score=289.84 Aligned_cols=169 Identities=26% Similarity=0.385 Sum_probs=148.3
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
.+.++++|++++|++ ....++++ ++||+|++|++++|+||+|||||||+++|.|+.+|++| +|.++|
T Consensus 9 ~~~l~~~~l~~~~~~---~~~~~~l~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~ 83 (226)
T cd03248 9 KGIVKFQNVTFAYPT---RPDTLVLQ-DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGKPISQYEH 83 (226)
T ss_pred CceEEEEEEEEEeCC---CCCCcccc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCCchHHcCH
Confidence 356999999999974 22246899 99999999999999999999999999999999999999 999887
Q ss_pred -----eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 -----~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++|++|++.++++|++||+.++.. .+..++.+..+...+.+.++.+|.|.++...++..+||||||||++|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 3899999999999999999998754 2233344445556778889999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|++++|+++||||||++||+++.+.+.+
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~ 191 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQ 191 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 9999999999999999999999887654
No 70
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-33 Score=305.44 Aligned_cols=169 Identities=27% Similarity=0.415 Sum_probs=142.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.++++|++++|+. +.++|+ |+||+|++||.++|+||+||||||||++|.|+.+|++| +|.++|.
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~-~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIK-GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEe-eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHH
Confidence 3789999999942 146899 99999999999999999999999999999999999999 9999883
Q ss_pred --EEEEccccccC-CCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 661 --KAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 661 --iayV~Q~pwI~-ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
++||+|++.+| +.|++|||.|+.. ++ +++.+++++..+|.+..+..| .+||||||||++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 144 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVA 144 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999 4699999998743 22 245677888888877666555 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||++++|+++|||||||+||+.+.+.+.+. ++.+.++ -++.|+|
T Consensus 145 lARAL~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTH 193 (356)
T PRK11650 145 MGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE-IQRLHRRLKTTSLYVTH 193 (356)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 99999999999999999999999999988765 4444333 2444444
No 71
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-33 Score=270.02 Aligned_cols=149 Identities=26% Similarity=0.410 Sum_probs=132.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
+.++++.|+|+. . .+ ..+++|++||+|||+|||||||||||++|.|+..|.+| .|.++|.
T Consensus 2 l~L~~V~~~y~~---~----~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G-~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH---L----PM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG-EILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc---c----eE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCc-eEEEcCeecCcCCcccC
Confidence 567889999975 1 12 45789999999999999999999999999999999999 9999983
Q ss_pred -EEEEccccccCC-CcHHHHhccCCC-------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 661 -KAYVPQSSWIQT-GTIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 661 -iayV~Q~pwI~n-gTIreNIlfG~~-------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
++.+.|+.-+|. -||++||-+|.. .+.++.+.++...+|....+++|. .||||||||+||
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHH
Confidence 899999999986 799999999953 356788899999999999999994 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
||++.++.+|+||||||||||+.-.....
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl 169 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEML 169 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHH
Confidence 99999999999999999999998776654
No 72
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-33 Score=301.51 Aligned_cols=169 Identities=31% Similarity=0.414 Sum_probs=146.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|++.+|++ ..+++ |+||+|++||++++.|||||||||+|++|.|+.+|++| +|.++|+
T Consensus 4 ~~l~i~~v~k~yg~------~~av~-~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVD-DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecCC------eeEEe-cceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChh
Confidence 46899999999974 57899 99999999999999999999999999999999999999 9999994
Q ss_pred ---EEEEccccccC-CCcHHHHhccCCC----CC-H---HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 661 ---KAYVPQSSWIQ-TGTIRENILFGKD----MR-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 661 ---iayV~Q~pwI~-ngTIreNIlfG~~----~d-~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
+++|+|+.-|| +-||+|||.||.. .. + ++++++++..+|.+.-+..| ..|||||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQR 144 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQR 144 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHH
Confidence 89999999996 5999999999965 12 2 48888999999887655544 6899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHH---HhHhcc
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQL---LFSINH 777 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~---~~~~~~ 777 (779)
+||||||..+|+++|||||+||||.+...++-.+ ++.+.+++ .+.|+|
T Consensus 145 VALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTH 195 (352)
T COG3842 145 VALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTH 195 (352)
T ss_pred HHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEEC
Confidence 9999999999999999999999999999987665 44455554 444555
No 73
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-29 Score=264.98 Aligned_cols=470 Identities=15% Similarity=0.153 Sum_probs=297.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVL--ASVFLFAKTVESLTQRQWYFGAN 343 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l--~~~l~~~~~~~~l~~~~~~~~~~ 343 (779)
...++|.+++.++....+.+...+.. ..++..+-+++....+.......+.. ...++++.. +++.......+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~---is~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSL---ISQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44677888888877766666554433 33443333444332211111111111 111222222 22222222233
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC--CC-ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~~--~~-~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~ 420 (779)
....++|.. +-+|.+.-+.. .| +++.++..++.|+..|.-.+..+.++..+.+-+..+..+|++.-+ .+...
T Consensus 78 ~~I~klr~~----~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l 152 (546)
T COG4615 78 HFIYKLRSE----FIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLL 152 (546)
T ss_pred HHHHHHHHH----HHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 334455544 45555544432 22 889999999999999986666677666666555666666666555 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHH--HHHHHHH-HHHHHHHHHHHHHHHH
Q 004004 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLL-RLREIERDSLKKYLYT 497 (779)
Q Consensus 421 ~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~--~f~~~i~-~~R~~E~~~l~~~~~~ 497 (779)
.++.+++.+..+.....+..++..+..+..|+-.+..+.++.|-|.+|...--. .+.+.+. ..++.+... .+.
T Consensus 153 ~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~----~~~ 228 (546)
T COG4615 153 TVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI----IRA 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh----hhh
Confidence 666666666677776666667777777888999999999999999999876322 2222221 122222211 111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 004004 498 CSAI-AFLFWASPTLVSVITFGVCILLKTP-LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (779)
Q Consensus 498 ~~~~-~~~~~~~p~lv~~~~f~~~~l~~~~-Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 575 (779)
.... ....|....+..++....|+...-. -+...+.|+...+-.++.|+.++....+.+.+|.++++||.++-..|+.
T Consensus 229 n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 229 NTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 1111 1223443333333333333332211 2223455555666778999999999999999999999999998765544
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
.+-....+. ++-..++++|+.|+|++ + ..-+. .||++|++||+|-|+|.+||||||+++++.|.+.|.+| .|
T Consensus 309 a~~~~~q~~-p~~~~lelrnvrfay~~---~--~Fhvg-PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG-~I 380 (546)
T COG4615 309 ADFPRPQAF-PDWKTLELRNVRFAYQD---N--AFHVG-PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EI 380 (546)
T ss_pred ccCCCCCcC-CcccceeeeeeeeccCc---c--cceec-ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCC-ce
Confidence 322111111 12346999999999986 2 36677 89999999999999999999999999999999999999 99
Q ss_pred EEcCe-------------EEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 656 KVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 656 ~i~g~-------------iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.+||+ ++-|.-|-|+|..++ -++. .+++..+.-++.-.+..-.+ +.+|--+ -..|
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kL 449 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKL 449 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----cccc
Confidence 99985 466777888887643 1222 34555555555555443322 2223222 2579
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ 770 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~ 770 (779)
|-|||.|+|+-=|+.-+.|||+|||=-+-=|++=.+..+++ ....||+
T Consensus 450 StGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~-lLp~LK~ 497 (546)
T COG4615 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV-LLPLLKE 497 (546)
T ss_pred ccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH-HhHHHHH
Confidence 99999999999999999999999999999999887765554 5455554
No 74
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.6e-33 Score=284.41 Aligned_cols=159 Identities=25% Similarity=0.407 Sum_probs=134.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ . ..++++ ++||++++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~---~-~~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---G-HQPALD-NLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---C-CeeEEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHH
Confidence 689999999964 1 246899 99999999999999999999999999999999999999 999877
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|+|.++. .|++||+.++.. . .+++.+++++.+++.+..+..| .+||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~ 144 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQ 144 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHH
Confidence 2799999999876 699999987521 1 2346677888888876555433 47999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||++||||++++|+++||||||++||+++.+.+.+ .+...
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 184 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEF 184 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988765 34433
No 75
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-32 Score=285.40 Aligned_cols=153 Identities=31% Similarity=0.472 Sum_probs=134.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++|+|+. +++++ |+||+|++||.++|+||+||||||||++|.|.++|.+| +|.++|
T Consensus 2 ~L~~~~ls~~y~~------~~il~-~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYGG------KPILD-DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEECC------eeEEe-cceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHH
Confidence 3789999999975 68999 99999999999999999999999999999999999999 999999
Q ss_pred ---eEEEEcccc-ccCCCcHHHHhccCC-CC----------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ---KKAYVPQSS-WIQTGTIRENILFGK-DM----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ---~iayV~Q~p-wI~ngTIreNIlfG~-~~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
++|||||++ .-+.-|++|=+.+|+ |+ |++..+++++.+++++.-++ .=..||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGG 142 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGG 142 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChh
Confidence 599999996 457899999999995 21 34456777999988765432 12469999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||+.||||+.++|+|+|||||||+||.+..-++++
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ 179 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH
Confidence 9999999999999999999999999999999988776
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.1e-32 Score=286.24 Aligned_cols=159 Identities=28% Similarity=0.392 Sum_probs=134.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc-----cCCCCCeEEEcC------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG------ 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~-----~~~~G~~I~i~g------ 659 (779)
|+++|++++|+. .++++ |+||+|++||+++|+|++|||||||+++|.|.+ +|.+| +|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYGD------KHALK-DISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG-EVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcCC------ceeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCe-EEEECCEEhhhc
Confidence 468999999964 46899 999999999999999999999999999999999 99999 998876
Q ss_pred ---------eEEEEccccccCCCcHHHHhccCCCC----C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ---------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ---------~iayV~Q~pwI~ngTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.+++.|++||+.++... + +++.+++++.+++.+.+...++ +.+||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LS 143 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLS 143 (227)
T ss_pred chHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCC
Confidence 27999999999999999999875321 1 2455677777777665544321 57899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||++||||++++|+++||||||++||+.+.+.+++ .++..
T Consensus 144 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 187 (227)
T cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAEL 187 (227)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988764 34443
No 77
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-32 Score=283.00 Aligned_cols=157 Identities=29% Similarity=0.396 Sum_probs=132.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ |+||+|++||.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYGS------VRALD-DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG-EILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeCC------eeeec-ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcCcCchhhc
Confidence 468999999964 46899 99999999999999999999999999999999999999 999877
Q ss_pred eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|+|.++. .|++||+.++.. .+ +++.+++++.+++.+.++.. ..+||||||||++|
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~l 141 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVAL 141 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 3899999998875 699999987632 12 23456677777776555433 35899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||+.++|+++||||||++||+.+.+.+.+ .+...
T Consensus 142 a~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~ 176 (213)
T cd03259 142 ARALAREPSLLLLDEPLSALDAKLREELRE-ELKEL 176 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999887764 44444
No 78
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.4e-32 Score=271.77 Aligned_cols=130 Identities=28% Similarity=0.496 Sum_probs=120.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSS 668 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~p 668 (779)
|+++|++++|+. .+++++ ++||++++||+++|+|++|||||||+++|+|+.+|.+| +|.++| .++|++|++
T Consensus 1 i~~~~~~~~~~~-----~~~~l~-~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~i~~~~q~~ 73 (166)
T cd03223 1 IELENLSLATPD-----GRVLLK-DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-RIGMPEGEDLLFLPQRP 73 (166)
T ss_pred CEEEEEEEEcCC-----CCeeee-cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCCceEEEECCCC
Confidence 468999999964 246899 99999999999999999999999999999999999999 999987 799999999
Q ss_pred ccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 004004 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (779)
Q Consensus 669 wI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~ 748 (779)
+++++|++|||.++ +...||||||||++||||++++|+++||||||
T Consensus 74 ~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 74 YLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred ccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99999999999875 35789999999999999999999999999999
Q ss_pred CCcCHHHHHHHHH
Q 004004 749 SAVDAHTGTHLFK 761 (779)
Q Consensus 749 SALDa~t~~~If~ 761 (779)
++||.++.+.+++
T Consensus 120 ~~LD~~~~~~l~~ 132 (166)
T cd03223 120 SALDEESEDRLYQ 132 (166)
T ss_pred cccCHHHHHHHHH
Confidence 9999999988765
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-32 Score=283.44 Aligned_cols=163 Identities=29% Similarity=0.396 Sum_probs=133.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++. +...++++ ++||+|++|++++|+||+|||||||+++|+|+++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~~~il~-~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGG--GEKVQALK-GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCC--CcceeEEe-eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHH
Confidence 4689999999641 00146899 99999999999999999999999999999999999999 998865
Q ss_pred ------eEEEEccccccCCC-cHHHHhccCCCC---C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 ------KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 ------~iayV~Q~pwI~ng-TIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|++.++.+ |++||+.++..+ + +++.+++++..+|++.++ .+..+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 145 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQ 145 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHH
Confidence 38999999999876 999999886432 1 245566777776654443 3446899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
|||++||||++++|+++||||||++||+++.+.+.+ .+....+
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~ 188 (218)
T cd03255 146 QQRVAIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNK 188 (218)
T ss_pred HHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999887654 4544433
No 80
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=2.5e-32 Score=279.09 Aligned_cols=157 Identities=30% Similarity=0.437 Sum_probs=134.5
Q ss_pred EEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------eE
Q 004004 592 DIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KK 661 (779)
Q Consensus 592 ~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------~i 661 (779)
+++|++++|+. . .++++ ++||++++||+++|+||+|||||||+++|.|.++|++| +|.++| .+
T Consensus 1 ~~~~l~~~~~~---~--~~~l~-~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK---G--TEILD-DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCC---c--Cceee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEhhhHHhhcce
Confidence 36789999963 1 46899 99999999999999999999999999999999999999 999887 38
Q ss_pred EEEcccc--ccCCCcHHHHhccCCC---CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 662 AYVPQSS--WIQTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 662 ayV~Q~p--wI~ngTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
+|++|+| .+++.|++||+.++.+ .++++.+++++.++|.+..+..| ..||||||||++||||+.
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHH
Confidence 9999998 5788999999988643 23457788999999876655544 479999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
.+|+++||||||++||+++.+.+.+ .+...
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 172 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGE-LIREL 172 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999887754 44443
No 81
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.9e-32 Score=296.61 Aligned_cols=175 Identities=23% Similarity=0.374 Sum_probs=138.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++|+|+... ....++|+ |+||+|++||+++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~-~~~~~~L~-~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G-~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ-ENELVALN-NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG-TIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCC-ccccccee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCEEccccccc
Confidence 4699999999997410 01246899 99999999999999999999999999999999999999 998864
Q ss_pred --------------------eEEEEcccc--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHccchHHHhhccCCC
Q 004004 660 --------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGD 710 (779)
Q Consensus 660 --------------------~iayV~Q~p--wI~ngTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd 710 (779)
.++||+|+| ++|+.|++|||.||.. .+++ +.++.++.++|.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------- 167 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--------- 167 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 278999998 8999999999998742 2222 2334444444432
Q ss_pred CccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 711 ~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
...++++.+||||||||++||||+.++|+|+|||||||+||+.+.+.+.+ .+..+.++ -++.|+|
T Consensus 168 -~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtH 234 (320)
T PRK13631 168 -SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITH 234 (320)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEec
Confidence 23456788999999999999999999999999999999999999988775 34443222 2445555
No 82
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.4e-32 Score=285.15 Aligned_cols=157 Identities=27% Similarity=0.422 Sum_probs=131.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. .++++ |+||+|++||+++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFGG------RTVLK-GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccChhhH
Confidence 468999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccccCCC-cHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 -----KKAYVPQSSWIQTG-TIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 -----~iayV~Q~pwI~ng-TIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++||+|++.++.. |++||+.++.. .+ +++.+++++.++|.+..+. ...+|||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~ 141 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGM 141 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHH
Confidence 27999999999886 99999987632 22 2345566777776544332 335899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++||||+.++|+++||||||++||+++.+.+.+- +...
T Consensus 142 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~ 182 (235)
T cd03261 142 KKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSL 182 (235)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999887653 4443
No 83
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.98 E-value=8.8e-32 Score=275.50 Aligned_cols=149 Identities=28% Similarity=0.427 Sum_probs=129.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..++++|++++|+. ...++++ ++||+|++|+.++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 5 ~~l~~~~l~~~~~~----~~~~~l~-~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~ 78 (207)
T cd03369 5 GEIEVENLSVRYAP----DLPPVLK-NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLE 78 (207)
T ss_pred CeEEEEEEEEEeCC----CCccccc-CceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEhHHCCHH
Confidence 46999999999964 1246899 99999999999999999999999999999999999999 999877
Q ss_pred ----eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 660 ----~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
.++||+|+|.++++|++|||.+..++++++..+.++ ++++..+||||||||++||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHH
Confidence 389999999999999999998765555444333332 3467889999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+++|+++||||||++||+++.+.+.+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~ 166 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQK 166 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 99999999999999999999887654
No 84
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.98 E-value=3.6e-32 Score=279.51 Aligned_cols=151 Identities=33% Similarity=0.558 Sum_probs=130.3
Q ss_pred EEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------EEE
Q 004004 592 DIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAY 663 (779)
Q Consensus 592 ~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------iay 663 (779)
+++|++++|+. .++++ ++||+|++||+++|+||+|||||||+++|.|+++|++| +|.++|. ++|
T Consensus 1 ~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG------HPVLE-DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG-SIRVFGKPLEKERKRIGY 72 (213)
T ss_pred CcccceeEECC------EEeee-cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCccHHHHHhheEE
Confidence 36789999964 45899 99999999999999999999999999999999999999 9999883 899
Q ss_pred Ecccccc---CCCcHHHHhccCCCC-----------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 664 VPQSSWI---QTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 664 V~Q~pwI---~ngTIreNIlfG~~~-----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
++|++.+ ++.|++|||.++... ++++.+++++.+++.+.++. ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999986 568999999875321 23466778888888765543 2458999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||+.++|+++||||||++||+.+.+.+.+
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 173 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 99999999999999999999999999987765
No 85
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.98 E-value=7.4e-33 Score=279.10 Aligned_cols=168 Identities=27% Similarity=0.382 Sum_probs=144.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|+|+.|.+ ..+++ |+||+|++||+++++|||||||||+|+.|.|.++|++| +|.++|
T Consensus 2 I~~~nvsk~y~~------~~av~-~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYGN------KKAVD-DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcCC------ceeee-eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecccCCHHHH
Confidence 789999999975 56788 99999999999999999999999999999999999999 999998
Q ss_pred --eEEEEccccccC-CCcHHHHhccCCC---CCH----HHHHHHHHHccchH--HHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 --KKAYVPQSSWIQ-TGTIRENILFGKD---MRQ----SFYEEVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 --~iayV~Q~pwI~-ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~--di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
+||||-|+.-|| +-||.|||.+--. +++ +|.++.++..+|++ ..+..| ..|||||+|
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQ 142 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQ 142 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhh
Confidence 499999999886 6999999987432 344 46677888888874 455666 579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH--hHHHHHHHhHhcc
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART--FSLFHQLLFSINH 777 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i--~g~L~~~~~~~~~ 777 (779)
||.+|||+..||+|+|+||||||||+-|.+++-++.. ...++.-++-|+|
T Consensus 143 RVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH 194 (309)
T COG1125 143 RVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH 194 (309)
T ss_pred HHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec
Confidence 9999999999999999999999999999999877654 3555555666666
No 86
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.98 E-value=1.3e-32 Score=302.64 Aligned_cols=156 Identities=28% Similarity=0.340 Sum_probs=128.5
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------------eEEEEccccccC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ 671 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-----------------~iayV~Q~pwI~ 671 (779)
.+.++ |+||+|++||+++|+||+|||||||+++|.|+++|++| +|.++| .++||+|++++|
T Consensus 6 ~~~l~-~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G-~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVN-DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG-QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEE-eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 45788 99999999999999999999999999999999999999 999987 389999999999
Q ss_pred C-CcHHHHhccCCCC---C-H---HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 004004 672 T-GTIRENILFGKDM---R-Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (779)
Q Consensus 672 n-gTIreNIlfG~~~---d-~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~L 743 (779)
+ .|++|||.|+.++ + + ++..++++..+|+..++ ....+||||||||++||||++++|+|+|
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7 5999999987542 2 2 33445555556654443 4456899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHhHH--HHHHHhHhcc
Q 004004 744 FDDPFSAVDAHTGTHLFKARTFSL--FHQLLFSINH 777 (779)
Q Consensus 744 LDDp~SALDa~t~~~If~~~i~g~--L~~~~~~~~~ 777 (779)
|||||||||+++.+.+++.+..-. ...-++.|+|
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTH 188 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 999999999999999988765321 1223455555
No 87
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.98 E-value=3.9e-32 Score=279.23 Aligned_cols=157 Identities=27% Similarity=0.395 Sum_probs=131.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+. .++++ |+||+|++||.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFGN------VTALD-DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEECC------eeeee-ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCcccc
Confidence 468999999964 46899 99999999999999999999999999999999999999 999877
Q ss_pred eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|++.++. .|++||+.++.. .+ +++.+++++..++.+.++. ...+||||||||++|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~l 141 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVAL 141 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHH
Confidence 3899999999985 699999987522 22 2344566666666554443 346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++++|+++||||||++||+++.+.+.+ .++..
T Consensus 142 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 176 (213)
T cd03301 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRA-ELKRL 176 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988765 34443
No 88
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.1e-32 Score=298.45 Aligned_cols=160 Identities=26% Similarity=0.356 Sum_probs=136.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|+++|++++|++ .++++ |+||+|++||.++|+||+|||||||+++|.|+.+|++| +|.++|
T Consensus 6 ~l~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRFGS------NTVID-NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEECC------eEEEe-eeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHH
Confidence 5899999999964 45799 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++||+|++.+|. .|++|||.|+.. .+ +++.+++++..+|.+..+.. ...||||||||++
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVa 146 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVA 146 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 3899999999995 599999999743 22 24556677777776544333 4689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
||||++++|+++|||||||+||+.+.+.+.+ .++.+.+
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~ 184 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMRE-KIRELQQ 184 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999998765 4555444
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=6.3e-32 Score=282.77 Aligned_cols=158 Identities=30% Similarity=0.387 Sum_probs=132.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||++++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 3 l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 3 IEVRNVSKRFGD------FVALD-DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG-TILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEeEEEEECC------EEeee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCcccc
Confidence 789999999964 46899 99999999999999999999999999999999999999 999877
Q ss_pred eEEEEccccccCC-CcHHHHhccCCCC-------C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 KKAYVPQSSWIQT-GTIRENILFGKDM-------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ~iayV~Q~pwI~n-gTIreNIlfG~~~-------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|+|.++. .|++|||.++... + +++.++.++..+|.+..+ ....+|||||||
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~q 143 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQ 143 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHH
Confidence 3899999999885 6999999986421 2 123455566666654333 334689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|++||||++++|+++||||||++||+++.+.+.+ ++....
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 183 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLH 183 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999987765 454443
No 90
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=5.6e-32 Score=279.55 Aligned_cols=157 Identities=31% Similarity=0.444 Sum_probs=133.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------eEE
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKA 662 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------~ia 662 (779)
++++|++++|+.. ....++++ ++||+|++|+.++|+||+|||||||+++|+|.++|.+| +|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~~~il~-~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGG--GGAVTALE-DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCC--CcceEEEe-ceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccccCcEE
Confidence 4689999999641 11146899 99999999999999999999999999999999999999 999987 489
Q ss_pred EEccccccCC-CcHHHHhccCCC---C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 663 YVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 663 yV~Q~pwI~n-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
||+|+|.++. .|++|||.++.. . .+++.+++++..+|.+.++..| .+||||||||++||||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a 145 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARA 145 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999887 799999987532 1 1345667778888866555433 5799999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
++++|+++||||||++||+.+.+.+++-
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~ 173 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEE 173 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999987763
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.8e-32 Score=290.06 Aligned_cols=171 Identities=27% Similarity=0.374 Sum_probs=140.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ....++|+ |+||+|++||.++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKE---DQEKYTLN-DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCC---CCcCeeee-eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHH
Confidence 4889999999974 22245899 99999999999999999999999999999999999999 999887
Q ss_pred ---eEEEEccccc--cCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~pw--I~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|+|. ++..|++|||.|+.. ++ +++.+++++..+|.+..+..| .+|||||||
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~q 147 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQ 147 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHH
Confidence 3799999984 677899999998742 22 345677888888876555433 689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|++||||++++|+++||||||++||+.+.+.+.+ ++..+-++ -++.++|
T Consensus 148 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH 199 (279)
T PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITH 199 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEec
Confidence 9999999999999999999999999998887664 45554432 2345555
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.98 E-value=6.4e-32 Score=276.65 Aligned_cols=167 Identities=25% Similarity=0.325 Sum_probs=139.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||++++|+.++|+||+|||||||+++|.|+.+|++| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLD-DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEECC------eEeEe-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHh
Confidence 468999999954 46899 99999999999999999999999999999999999999 999987
Q ss_pred eEEEEccccccC-CCcHHHHhccCC---CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 660 KKAYVPQSSWIQ-TGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 660 ~iayV~Q~pwI~-ngTIreNIlfG~---~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
.++||+|++.++ +.|++||+.++. ..++++.+++++..++.+.++. ....||||||||++||||+
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 141 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALAL 141 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHH
Confidence 389999999887 689999998753 2356677888888888765443 3568999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH--HHHhHhcc
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH--QLLFSINH 777 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~--~~~~~~~~ 777 (779)
..+|+++||||||++||+.+.+.+.+ .+....+ ..++.++|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH 184 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSH 184 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEcC
Confidence 99999999999999999999988765 4444332 23344555
No 93
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=4.7e-32 Score=296.69 Aligned_cols=171 Identities=24% Similarity=0.301 Sum_probs=138.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+.. +...++|+ |+||+|++||.++|+||+|||||||+++|.|+.+|++| +|.++|
T Consensus 2 I~~~~lsk~y~~~--~~~~~~L~-~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G-~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG--TKTIQALN-NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG-SVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC--CcceEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHH
Confidence 7899999999631 11246899 99999999999999999999999999999999999999 999887
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
+++|++|++.++. .|++|||.|+.. .+ +++..++++..+|.+..+. ....||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqk 146 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQK 146 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHH
Confidence 3899999999985 899999987532 22 2345567777777654443 3468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||++||||+.++|+++|+||||||||+.+.+.+.+ .+..+-++ -++.|+|
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH 199 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITH 199 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 99999999999999999999999999999998765 34333332 2455555
No 94
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=6.5e-32 Score=277.64 Aligned_cols=153 Identities=27% Similarity=0.383 Sum_probs=130.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. ..++++ |+||++++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~l~-~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALD-GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC-----Cceeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHH
Confidence 468999999964 146899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|+|.++. .|++||+.++.. .+ +++.+++++.+++++.++..| .+||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~ 142 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQ 142 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHH
Confidence 2799999999887 599999987532 11 235667777778766554433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||++||||++++|+++|||||||+||+++.+.+.+
T Consensus 143 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 177 (214)
T cd03292 143 QRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177 (214)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999887765
No 95
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.5e-32 Score=285.08 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=136.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc---CCCCCeEEEcC-------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~---~~~G~~I~i~g------- 659 (779)
.|+++|+++.|+. .++++ |+||++++||.++|+|++|||||||+++|+|+++ |.+| +|.++|
T Consensus 2 ~~~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G-~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALF-DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG-LVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEECC------Eeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce-EEEECCEecccCC
Confidence 4789999999964 46899 9999999999999999999999999999999974 6899 999887
Q ss_pred ------eEEEEccccccCCCcHHHHhccCCCC---------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ------KKAYVPQSSWIQTGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ------~iayV~Q~pwI~ngTIreNIlfG~~~---------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++|++|+|.+|+.|++|||.++... ++++.+++++.++|.+.++.+ ..+++.+||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 146 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGG 146 (246)
T ss_pred HHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHH
Confidence 38999999999999999999876311 123566788888887655432 34567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||++||||++++|+++||||||++||+++...+.+ ++..
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~ 187 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKE 187 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999877654 4544
No 96
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-32 Score=271.23 Aligned_cols=154 Identities=26% Similarity=0.436 Sum_probs=132.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|+++|++-.|++ +...|+ +|||+|++||.|||+|+|||||||||++|-|..++++| +|.++|
T Consensus 3 ~i~~~nl~k~yp~-----~~~aL~-~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 3 MIEVKNLSKTYPG-----GHQALK-DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKE 75 (258)
T ss_pred eEEEeeeeeecCC-----Cceeee-eEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHH
Confidence 5899999999975 367899 99999999999999999999999999999999999999 999988
Q ss_pred ------eEEEEcccccc-CCCcHHHHhccCCC------------CCHHHHHH---HHHHccchHHHhhccCCCCccccCC
Q 004004 660 ------KKAYVPQSSWI-QTGTIRENILFGKD------------MRQSFYEE---VLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 660 ------~iayV~Q~pwI-~ngTIreNIlfG~~------------~d~~~y~~---vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
++||++|++-| ..-|+-+|++.|+- ++++.... +++..++.+..- .|
T Consensus 76 lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qr 144 (258)
T COG3638 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QR 144 (258)
T ss_pred HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HH
Confidence 48999999997 56889999998742 34444444 444455544432 45
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-.+|||||+|||+|||||+++|+|+|=|||+|+||+.+++++++
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~ 188 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHH
Confidence 68999999999999999999999999999999999999999765
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=8.6e-32 Score=278.20 Aligned_cols=161 Identities=28% Similarity=0.386 Sum_probs=131.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++. ....++++ ++||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 2 l~~~~v~~~~~~~--~~~~~~l~-~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEG--KLDTRVLK-GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG-EVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCC--CcceEeEe-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcCHhHH
Confidence 6789999999641 11246899 99999999999999999999999999999999999999 998875
Q ss_pred ------eEEEEccccccCC-CcHHHHhccCC---CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 ------KKAYVPQSSWIQT-GTIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 ------~iayV~Q~pwI~n-gTIreNIlfG~---~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|++.++. .|++||+.++. .++ +++..++++.+++++.+. .....|||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 146 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGE 146 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHH
Confidence 3899999999885 69999998742 122 234556666666654433 3346899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++||||++++|+++|||||||+||+++.+.+.+ .+...
T Consensus 147 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~ 187 (221)
T TIGR02211 147 RQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLEL 187 (221)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988765 44444
No 98
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=8.3e-32 Score=298.11 Aligned_cols=161 Identities=28% Similarity=0.342 Sum_probs=138.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|++++|+. .++++ ++||++++||+++|+||+||||||||++|.|+.+|++| +|.++|.
T Consensus 13 ~~L~l~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFDG------KEVIS-NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEECC------eEEEe-eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHH
Confidence 35899999999964 45799 99999999999999999999999999999999999999 9999883
Q ss_pred ---EEEEccccccCC-CcHHHHhccCCCC---C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 661 ---KAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 661 ---iayV~Q~pwI~n-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
++||+|++.+|. .|++|||.||... + +++.+++++..+|.+.++..| .+||||||||+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRV 153 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRV 153 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 899999999985 5999999997432 2 245677888888887776665 58999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
+||||++++|+++|||||||+||+++.+.+.+ .+..+.+
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~ 192 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQN-ELKALQR 192 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999887654 4544444
No 99
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.5e-32 Score=289.71 Aligned_cols=175 Identities=25% Similarity=0.397 Sum_probs=139.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+... ....++++ |+||+|++||+++|+|++|||||||+++|.|.++|.+| +|.++|
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~~l~-~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGT-PFEKKALD-NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCC-ccccceee-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEECCEECCCcCccH
Confidence 378999999996410 01246899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEcccc--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 -----~iayV~Q~p--wI~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+........|||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq 149 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQ 149 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHH
Confidence 379999998 6889999999998642 232 34566777777751 112334567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||++||||+..+|+++||||||++||+++.+.+.+ ++..+-++ -++.++|
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtH 203 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSH 203 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 999999999999999999999999999999987765 45544432 3455555
No 100
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=282.38 Aligned_cols=160 Identities=26% Similarity=0.349 Sum_probs=136.5
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------e
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------~ 660 (779)
..|+++|++++|+. .++++ ++||+|++|++++|+||+|||||||+++|.|.++|++| +|.++| .
T Consensus 11 ~~l~i~~l~~~~~~------~~il~-~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLN-QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEECC------cceee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEHHHhhCc
Confidence 45999999999964 46899 99999999999999999999999999999999999999 998877 3
Q ss_pred EEEEccccccCC-CcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 004004 661 KAYVPQSSWIQT-GTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 661 iayV~Q~pwI~n-gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ 738 (779)
++|++|++.++. .|++||+.++.. ..+++.+++++..+|.+..+ ....+||||||||++||||+.++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 899999998887 799999988642 12456677777777765433 34578999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 739 SDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 739 adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|+++||||||++||+.+.+.+.+ .+....
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~-~L~~~~ 180 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQD-LIESLW 180 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999887765 444443
No 101
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=8.6e-32 Score=276.86 Aligned_cols=154 Identities=22% Similarity=0.388 Sum_probs=132.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. +.++++ |+||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 2 l~~~~l~~~~~~-----~~~il~-~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG-----GVAALH-DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG-QVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC-----Cceeec-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHH
Confidence 678999999953 246899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|+|.++. .|++||+.++.. + .+++.++.++..++.+.++..| .+||||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~ 143 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQ 143 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHH
Confidence 3799999999985 799999987521 1 2346677888888876555443 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||++||||++++|+++||||||++||+.+...+.+-
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 179 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 999999999999999999999999999999887653
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1.2e-31 Score=281.10 Aligned_cols=168 Identities=27% Similarity=0.372 Sum_probs=136.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. +.++++ ++||++++|++++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~-----~~~il~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN-----GKQALK-NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG-SILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC-----Ccceee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc-EEEECCEEhhhCCHHHH
Confidence 678999999962 146899 99999999999999999999999999999999999999 999876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---------------CCHHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|++.++. .|++||+.++.. .++++.+++++.++|.+.++ ...
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~ 143 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRA 143 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCc
Confidence 2799999998876 699999987531 11234556666666654432 356
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
.+||||||||++||||++++|+++|||||||+||+.+.+.+.+ .+....++ .++.++|
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRINKEDGITVIINLH 204 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeC
Confidence 7899999999999999999999999999999999999887754 45544432 2344455
No 103
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=8.4e-32 Score=276.30 Aligned_cols=158 Identities=28% Similarity=0.442 Sum_probs=130.7
Q ss_pred EEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC------------
Q 004004 592 DIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (779)
Q Consensus 592 ~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------ 659 (779)
+++|++++|+. . ..++++ ++||++++|++++|+||+|||||||+++|+|.++|.+| +|.++|
T Consensus 1 ~~~~l~~~~~~---~-~~~il~-~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 1 ELKNLSFSYPD---G-ARPALD-DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG-EVLVDGKDLTKLSLKELR 74 (211)
T ss_pred CceeEEEecCC---C-Ceeeec-ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEcccCCHHHHH
Confidence 36789999964 1 246899 99999999999999999999999999999999999999 999877
Q ss_pred -eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 660 -KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 660 -~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
.++|++|++ .+++.|++||+.++.. ++ +++.++.++..+|.+.++ .+..+||||||||+
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 143 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRV 143 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHH
Confidence 279999998 3678999999987532 22 234456667677765444 33468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+||||++++|+++|||||||+||+.+.+.+.+. +...
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~ 180 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL-LKKL 180 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999987763 4433
No 104
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-32 Score=298.35 Aligned_cols=168 Identities=25% Similarity=0.345 Sum_probs=140.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 3 ~l~i~~l~~~~~~------~~vl~-~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G-~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISK-DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG-DLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeCC------eEEEe-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHhH
Confidence 3889999999964 35899 99999999999999999999999999999999999999 999987
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++||+|++.+|. .|++|||.|+.. .+ +++.+++++.++|.+..+..| .+||||||||++
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRva 143 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVA 143 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHH
Confidence 3899999999986 599999998743 22 245677888888866555443 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+.++|+++|||||||+||+++.+.+.+. ++.+.++ -++.|+|
T Consensus 144 LAraL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTH 192 (369)
T PRK11000 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTH 192 (369)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999887653 4444433 2344445
No 105
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.6e-32 Score=284.09 Aligned_cols=163 Identities=24% Similarity=0.350 Sum_probs=135.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|++ .++++ ++||+|++||+++|+|++|||||||+++|.|+++ |++| +|.++|
T Consensus 5 ~~l~~~~l~~~~~~------~~il~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~ 76 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALH-DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG-EILLDGENIY 76 (253)
T ss_pred cEEEEeeeEEEECC------eeeec-ceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCce-EEEECCEEcc
Confidence 45899999999964 36899 9999999999999999999999999999999864 5789 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---C-----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.+++.|++||+.++.. . .+++.++.++.+++.+.+. +.......+
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 149 (253)
T PRK14242 77 DPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALG 149 (253)
T ss_pred ccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCccc
Confidence 3899999999999999999987521 1 1345566777777765443 233566789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||||++||||++++|+++||||||++||+++.+.+.+ .+...
T Consensus 150 LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 195 (253)
T PRK14242 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHEL 195 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999887754 44443
No 106
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.8e-32 Score=279.18 Aligned_cols=152 Identities=32% Similarity=0.455 Sum_probs=134.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.|.++|++..|+. .+.+. ||+++|+.||.+|+.|||||||||||++|.|...|++| .|.++|.
T Consensus 2 ~i~i~~~~~~~~~------~~a~~-di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G-~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFGA------FGALD-DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAG-RIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhccc------ccccc-cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCc-eEEECCEeccchhccc
Confidence 3678888888865 46788 99999999999999999999999999999999999999 9999984
Q ss_pred -----EEEEccccccC-CCcHHHHhccCCCC---------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 661 -----KAYVPQSSWIQ-TGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 661 -----iayV~Q~pwI~-ngTIreNIlfG~~~---------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
||||.|+.-+| +.||.|||.||.+. .+.+.++.++.|+|+..-+.-| ..|||||
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQ 142 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQ 142 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHH
Confidence 89999999875 69999999999622 3467788899999976555555 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
|||||||||+..+|+++||||||+|||++..+.+-
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr 177 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999988753
No 107
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6e-32 Score=277.46 Aligned_cols=151 Identities=23% Similarity=0.389 Sum_probs=129.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|+++.|+. .++++ |+||++++| +++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 i~~~~~~~~~~~------~~~l~-~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYGK------KRALD-GVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEECC------EEEEc-ceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccccchHHHH
Confidence 478999999964 36899 999999999 9999999999999999999999999999 999887
Q ss_pred -eEEEEccccccCCC-cHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|++|+|.+|.+ |++|||.+... .+ +++.+++++.+++.+..+. ...+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 140 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVG 140 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHH
Confidence 38999999999876 99999986421 11 3456677788887654432 33579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||+.++|+++||||||++||+.+.+.+.+
T Consensus 141 la~al~~~p~llllDEPt~~LD~~~~~~l~~ 171 (211)
T cd03264 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRN 171 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 9999999999999999999999999988765
No 108
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=1e-31 Score=282.46 Aligned_cols=161 Identities=29% Similarity=0.395 Sum_probs=134.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC-----CCCeEEEcC------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG------ 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-----~G~~I~i~g------ 659 (779)
++++|++++|+. .++++ |+||+|++||+++|+|++|||||||+++|.|.++|. +| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G-~i~~~g~~~~~~ 73 (247)
T TIGR00972 2 IEIENLNLFYGE------KEALK-NINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG-KVLFDGQDIYDK 73 (247)
T ss_pred EEEEEEEEEECC------eeeec-ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-EEEECCEEcccc
Confidence 789999999964 35899 999999999999999999999999999999999988 99 998866
Q ss_pred ---------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ---------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ---------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++++++.|++||+.++.. .+ +++.+++++..+|.++++ ........+||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 146 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLS 146 (247)
T ss_pred ccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCC
Confidence 2899999999999999999987532 12 234556677777764332 12345567999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||++||||++++|+++||||||++||+++...+++ ++...
T Consensus 147 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 190 (247)
T TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQEL 190 (247)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988754 45443
No 109
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-31 Score=273.82 Aligned_cols=155 Identities=25% Similarity=0.385 Sum_probs=132.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
|+++|++++|++ . .. |+||+|++||+++|+||+|||||||+++|+|+++|.+| +|.++|.
T Consensus 1 i~~~~l~~~~~~------~--~~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE------Q--PM-HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG-RVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC------E--ec-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCcCCHhHc
Confidence 468999999964 1 24 89999999999999999999999999999999999999 9999883
Q ss_pred -EEEEccccccCCC-cHHHHhccCCC-------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 661 -KAYVPQSSWIQTG-TIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 661 -iayV~Q~pwI~ng-TIreNIlfG~~-------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
++|++|++.++.+ |++||+.++.. .++++.+++++.++|.+.....| .+||||||||++|
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~i 139 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVAL 139 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999875 99999987632 12456778888888876666544 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++++|+++||||||++||+++.+.+.+ .++..
T Consensus 140 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 174 (211)
T cd03298 140 ARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDL 174 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999987655 34443
No 110
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-31 Score=278.68 Aligned_cols=160 Identities=29% Similarity=0.403 Sum_probs=135.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. .++++ |+||+|++|++++|+||+|||||||+++|+|+++|.+| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILK-DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeCC------eeeee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHH
Confidence 4789999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred ---eEEEEccccccCCCcHHHHhccCCCC---CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 ---KKAYVPQSSWIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 ---~iayV~Q~pwI~ngTIreNIlfG~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++|++|++.++..|++||+.++... ++++.+++++.+++.+++. .....+||||||||++|||
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~ 144 (241)
T PRK14250 75 LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIAR 144 (241)
T ss_pred hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHH
Confidence 38999999999999999999886432 2456677788887753321 1346689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|++++|+++||||||++||+.+.+.+. ++++...
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 178 (241)
T PRK14250 145 TLANNPEVLLLDEPTSALDPTSTEIIE-ELIVKLK 178 (241)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 999999999999999999999877665 4455443
No 111
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=2.8e-31 Score=275.43 Aligned_cols=161 Identities=23% Similarity=0.337 Sum_probs=134.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|+++.|+. .++++ |+||+|++||.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 6 ~~i~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILN-NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPE 77 (225)
T ss_pred ceEEEeccEEeeCC------ceeee-ccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEcCcCCHH
Confidence 35899999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred ----eEEEEccccccCCCcHHHHhccCC-----CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQTGTIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 ----~iayV~Q~pwI~ngTIreNIlfG~-----~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|++|++.+++.|++||+.++. +.++++.+++++..++.+ +.......+||||||||++
T Consensus 78 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~ 147 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRIS 147 (225)
T ss_pred HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHH
Confidence 389999999999999999998642 122344556666666642 2234567799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
||||++++|+++||||||++||+.+.+.+.+ ++....
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 184 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNE-IIHRYV 184 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999998776544 444443
No 112
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.3e-32 Score=278.30 Aligned_cols=169 Identities=28% Similarity=0.441 Sum_probs=146.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++|+|++ . .++++ ++|++|++|+.++|+|++|||||||++.+.|.++|++| .|.++|
T Consensus 3 ~i~~~~l~~~y~~---~--~~~l~-~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G-~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG---R--KAALK-DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG-EVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC---C--ceeee-eeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCC-EEEECCeeccchhhHH
Confidence 4789999999986 2 68999 99999999999999999999999999999999999999 998877
Q ss_pred ----eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
+++||.|+| .+|..||.|.|.||.+ ++ +++.+++++.|++.+..+..| .+||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqk 144 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQK 144 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcce
Confidence 389999999 7999999999999953 33 356788999999988766554 68999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||+|||.++..+|+++|||||||+||+...+.+.+- +..+-.+ -++.|+|
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~-l~~L~~~~~~tii~~tH 197 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL-LKKLKEEGGKTIIIVTH 197 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCCeEEEEeC
Confidence 999999999999999999999999999999987652 3333333 2666776
No 113
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=1.4e-31 Score=294.64 Aligned_cols=168 Identities=31% Similarity=0.447 Sum_probs=139.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ ++||+|++||+++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 2 ~L~i~~l~~~~~~------~~~l~-~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLN-DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeCC------eEEEE-EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHH
Confidence 3789999999964 35899 99999999999999999999999999999999999999 999987
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCCC-------C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~~-------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++||+|++.+|. .|++|||.|+... + +++.+++++..+|.+..+.. ...||||||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~ 142 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQK 142 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHH
Confidence 3899999999986 6999999987431 2 23556677777776544433 468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||++||||+.++|+++|||||||+||+++.+.+.+ .++.+.++ -++.|+|
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~~~g~tii~vTH 195 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRR-WLRQLHEELKFTSVFVTH 195 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 99999999999999999999999999999988765 45554443 2344555
No 114
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=1e-31 Score=295.75 Aligned_cols=160 Identities=30% Similarity=0.381 Sum_probs=136.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .+.++ |+||++++||+++|+||+||||||||++|.|+.+|++| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALK-DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeCC------eEEEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHH
Confidence 4899999999964 45799 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++||+|++-+|. .|++|||.|+.. .+ +++.+++++..+|.+..+ ....+||||||||++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRva 144 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVA 144 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHH
Confidence 3899999999995 799999999742 22 345667777777765544 344689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
||||+.++|+++|||||||+||+++.+++.+. ++.+.+
T Consensus 145 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~ 182 (353)
T TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQR 182 (353)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999887654 444444
No 115
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-31 Score=277.17 Aligned_cols=167 Identities=20% Similarity=0.326 Sum_probs=136.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|++ .++++ |+||++++||+++|+|++|||||||+++|.|.++|.+| +|.++|
T Consensus 1 i~~~~~~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYGD------FEAVR-GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEECC------EEeee-ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecCcChHHHh
Confidence 478999999964 46899 99999999999999999999999999999999999999 999877
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCC---C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|++|++.++. .|++||+.++.. . .+++.+++++..+|.+..+.. ..+||||||||++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~ 141 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLE 141 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHH
Confidence 3899999998876 599999986421 1 134567778888886544432 3589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||++.+|+++||||||++||+++.+.+.+ .+....++ .++.++|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 142 IARSLVHRPEVLFLDEPTIGLDPQTRAHVWE-YIEKLKEEFGMTILLTTH 190 (220)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 9999999999999999999999999887664 44444332 2344445
No 116
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-31 Score=281.57 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=133.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ |+||+|++||+++|+|++|||||||+++|.|+++| .+| +|.++|
T Consensus 7 ~l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~ 78 (254)
T PRK14273 7 IIETENLNLFYTD------FKALN-NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEG-NVIYEGKNIYS 78 (254)
T ss_pred eEEEeeeEEEeCC------ceeec-ceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCce-EEEECCEeccc
Confidence 5899999999964 46899 99999999999999999999999999999999987 489 898865
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++|||.|+.. .+ +++.+++++.+++.+.++ +..+ .+..+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~L 151 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLN----TNALSL 151 (254)
T ss_pred ccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHh----CCcccC
Confidence 2899999999999999999998642 12 234556666666643332 2223 357899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||++++|+++||||||++||+++.+.+.+ .+..
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~ 195 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIIN 195 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999988765 3443
No 117
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=278.01 Aligned_cols=162 Identities=26% Similarity=0.368 Sum_probs=132.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+.. ....++++ ++||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 5 ~l~~~~l~~~~~~~--~~~~~il~-~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEG--SVQTDVLH-NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCC--CcceeeEE-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCCHHH
Confidence 48999999999641 11146899 99999999999999999999999999999999999999 999876
Q ss_pred -------eEEEEccccccCCC-cHHHHhccCC---CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------KKAYVPQSSWIQTG-TIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------~iayV~Q~pwI~ng-TIreNIlfG~---~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++|++|++.++.. |++||+.++. ..+ +++.+++++.++|.+.. .....+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 149 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGG 149 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHH
Confidence 28999999998875 9999998732 122 23456677777665433 2345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++||||+..+|+++||||||++||+.+.+.+.+ .+...
T Consensus 150 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 191 (233)
T PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGEL 191 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999887764 34433
No 118
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=282.73 Aligned_cols=162 Identities=27% Similarity=0.370 Sum_probs=135.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|++ .++++ |+||+|++||.++|+||+|||||||+++|.|.++ |++| +|.++|
T Consensus 12 ~~l~~~~l~~~~~~------~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G-~i~~~g~~~~ 83 (260)
T PRK10744 12 SKIQVRNLNFYYGK------FHALK-NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG-EILLDGENIL 83 (260)
T ss_pred ceEEEEEEEEEeCC------eEEee-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcce-EEEECCEEcc
Confidence 46899999999964 36899 9999999999999999999999999999999986 4799 898866
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC----CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++..|++||+.++.. .++ ++.+++++..++.++++ +...+...+
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 156 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYS 156 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCC
Confidence 3899999999999999999987632 222 34566777777754443 234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+..
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~ 201 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITE 201 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999887654 3433
No 119
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=1.4e-31 Score=276.40 Aligned_cols=154 Identities=25% Similarity=0.427 Sum_probs=130.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|+++.|++ . +.++++ |+||++++|+.++|+||+|||||||+++|.|.++|++| +|.++|.
T Consensus 1 l~~~~l~~~~~~---~-~~~il~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---G-TKPAVD-DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---C-Cceeec-ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccchHHHh
Confidence 468999999964 1 256899 99999999999999999999999999999999999999 9998873
Q ss_pred --EEEEccccccC-CCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 661 --KAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 661 --iayV~Q~pwI~-ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
++|++|++.++ +.|++||+.++.. .+ +++.+++++.++|.+..+ ....+||||||||++
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 143 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLS 143 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHH
Confidence 79999999988 6899999987421 22 245667778777754432 223589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||+.++|+++||||||++||+.+.+.+.+
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~ 174 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999988765
No 120
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=1.2e-31 Score=279.86 Aligned_cols=152 Identities=21% Similarity=0.347 Sum_probs=127.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFGG------LVALD-DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG-SVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEECC------EEEec-CceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEECCCCCHHHH
Confidence 468999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCCCCC-----------------HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGKDMR-----------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~~~d-----------------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|++.++.+ |++|||.++.... +++.+++++..++ +.......
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~ 141 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPA 141 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCCh
Confidence 28999999999886 9999998764210 1123334444443 33344566
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||||||||++||||+.++|+++||||||++||+.+.+.+++
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 184 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 7899999999999999999999999999999999999988776
No 121
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=1.9e-31 Score=275.09 Aligned_cols=161 Identities=20% Similarity=0.317 Sum_probs=132.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+.. ....++++ ++||++++|+.++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 2 l~~~~v~~~~~~~--~~~~~il~-~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV--KKTVQAVD-GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC--Cccceeec-ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEEcccCHHHHH
Confidence 6789999999751 00126899 99999999999999999999999999999999999999 999887
Q ss_pred -eEEEEccccccCCC-cHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|++|+|.++.+ |++||+.+... .+ +++.+++++..++.+.++ ....+||||||||++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 146 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVA 146 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHH
Confidence 38999999999885 99999976421 11 234556667666654433 456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++.+|+++||||||++||+.+.+.+.+ .+...
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~ 182 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALRE-FIRQL 182 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999887665 34433
No 122
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-31 Score=284.55 Aligned_cols=159 Identities=27% Similarity=0.379 Sum_probs=137.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ..++++ |+||+|++||.++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 4 ~l~~~~l~~~~~~-----~~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD-----GTKALK-GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG-RVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC-----CCeeee-eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHH
Confidence 4889999999963 246899 99999999999999999999999999999999999999 999887
Q ss_pred ---eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|+| .+++.|++|||.|+.. .+ +++++++++.++|.+..+..| ..|||||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~q 145 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKK 145 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHH
Confidence 389999998 6889999999998732 22 346778888888876666555 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++||||+.++|+++||||||++||+.+.+.+.+ .+...
T Consensus 146 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 184 (274)
T PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRL 184 (274)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999988754 34433
No 123
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=1.6e-31 Score=294.73 Aligned_cols=161 Identities=27% Similarity=0.397 Sum_probs=138.1
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCC--CCeEEEcC-------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~--G~~I~i~g------- 659 (779)
+.++++|++++|+. .++++ |+||+|++||+++|+||+||||||||++|.|+.+|++ | +|.++|
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~~~~ 75 (362)
T TIGR03258 4 GGIRIDHLRVAYGA------NTVLD-DLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLTHAP 75 (362)
T ss_pred eEEEEEEEEEEECC------eEEEe-eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECCCCC
Confidence 46899999999964 35899 9999999999999999999999999999999999999 9 999987
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|++.+|. -|++|||.|+.. .+ +++.+++++..+|++..+..| .+|||||||
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~Q 144 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQ 144 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHH
Confidence 3899999999985 599999998642 22 245677888888876666555 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
|++||||+.++|+++|||||||+||+.+.+.+.+. +..+.+
T Consensus 145 RvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~ 185 (362)
T TIGR03258 145 RIAIARAIAIEPDVLLLDEPLSALDANIRANMREE-IAALHE 185 (362)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999998887654 444433
No 124
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.5e-31 Score=278.30 Aligned_cols=168 Identities=25% Similarity=0.368 Sum_probs=133.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ +.++++ |+||++++|++++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALK-DVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG-SVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC-----ccEEEe-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEeccccCHhHH
Confidence 468999999963 146899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC------------C---CHHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------------M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~------------~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|++.++. .|++||+.++.. . ++++.+++++..++.+. ...++
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~ 142 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRA 142 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCc
Confidence 2899999998876 799999987531 1 12334455555555432 23456
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
.+||||||||++||||+.++|+++|||||||+||+++.+.+.+ .+....++ .++.++|
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLH 203 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 7999999999999999999999999999999999999988765 34443322 2445555
No 125
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.9e-31 Score=258.49 Aligned_cols=153 Identities=28% Similarity=0.393 Sum_probs=139.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+|+||+..|+. ..+.|+ |+||+|++||.+-++||||||||||+++|.++..|+.| +|.++|
T Consensus 2 I~f~~V~k~Y~~-----g~~aL~-~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G-~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG-----GREALR-DVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRG-KILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC-----Cchhhh-CceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCc-eEEECCeeccccccccc
Confidence 789999999986 367999 99999999999999999999999999999999999999 999988
Q ss_pred -----eEEEEcccccc-CCCcHHHHhccCCC-----C--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWI-QTGTIRENILFGKD-----M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI-~ngTIreNIlfG~~-----~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
+|++|.||.-| .+-|+.||+.|.-. - -+++..++++..+|.+-...|| ..|||||+
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQ 143 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQ 143 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHH
Confidence 49999999985 77899999998532 1 1456778899999999999998 57999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||++||||+..+|+++|=||||-+||+.++..|++
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~ 178 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR 178 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999765
No 126
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=2.9e-31 Score=272.67 Aligned_cols=156 Identities=31% Similarity=0.356 Sum_probs=130.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|++++|+. .++++ ++||++++|++++|+||+|||||||+++|.|+++|++| +|.++|+
T Consensus 1 l~~~~l~~~~~~------~~~l~-~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLK-GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG-TIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEECC------eEeec-CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccchhHH
Confidence 468999999964 46899 99999999999999999999999999999999999999 9988762
Q ss_pred -----EEEEccccccCC-CcHHHHhccCC----CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 661 -----KAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 661 -----iayV~Q~pwI~n-gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
++|++|++.++. .|++||+.++. ..+. ++.+++++.+++.+.++. ...+||||||
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~ 141 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQ 141 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHH
Confidence 799999999886 79999998753 2222 345556666666554443 3468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||++||||+.++|+++||||||++||+++.+.+.+ .+..
T Consensus 142 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~ 180 (213)
T cd03262 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD-VMKD 180 (213)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999887665 3443
No 127
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=3.9e-31 Score=274.70 Aligned_cols=161 Identities=26% Similarity=0.369 Sum_probs=134.7
Q ss_pred cEEEeeeEEEeccccccCC-CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 590 AIDIEAGEYAWDAREENFK-KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~-~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
.++++|++++|++ ... .++++ ++||+|++|+.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~~~~~~l~-~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSVGQ---GEHELSILT-GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG-EVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEccC---CCcceEEEe-ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-eEEECCEEcccCCHH
Confidence 5899999999964 111 35899 99999999999999999999999999999999999999 998876
Q ss_pred --------eEEEEccccccCC-CcHHHHhccCC---CC----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 --------KKAYVPQSSWIQT-GTIRENILFGK---DM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 --------~iayV~Q~pwI~n-gTIreNIlfG~---~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++|++|+|.++. .|++|||.++. .. ++++.+++++.+++.+.++..| .+|||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~ 149 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSG 149 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCH
Confidence 3899999999887 49999998642 11 2346677888888876655443 47999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||++||||+.++|+++||||||++||+.+.+.+++ .+...
T Consensus 150 Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 192 (228)
T PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD-LLFSL 192 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999877654 34443
No 128
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-31 Score=284.89 Aligned_cols=163 Identities=25% Similarity=0.410 Sum_probs=135.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|++++|++.+ ....++|+ |+||+|++||.++|+|++|||||||+++|.|+.+|++| +|.++|.
T Consensus 3 l~~~~l~~~y~~~~-~~~~~~L~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 3 ITFQKVEHRYQYKT-PFERRALY-DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEECCCC-ccccccee-eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccch
Confidence 78999999996411 01246899 99999999999999999999999999999999999999 9998772
Q ss_pred -------EEEEcccc--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 661 -------KAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 661 -------iayV~Q~p--wI~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
++||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+++. ..+..+||||
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgG 149 (290)
T PRK13634 80 LKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGG 149 (290)
T ss_pred HHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHH
Confidence 79999998 6889999999998732 222 35677788888865442 2345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++||||+.++|+++|||||||+||+++.+.+.+ .++.+
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l 191 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKL 191 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999887765 34443
No 129
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.3e-31 Score=271.84 Aligned_cols=153 Identities=23% Similarity=0.393 Sum_probs=129.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------eE
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------KK 661 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------~i 661 (779)
++++|+++.|++ .++++ ++||++++|+.++|+||+|||||||+++|.|.++|++| +|.++| .+
T Consensus 1 l~~~~l~~~~~~------~~~l~-~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGR------VTALD-DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG-EVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEECC------EEEEe-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCCchhHHHHccE
Confidence 468999999964 46899 99999999999999999999999999999999999999 999987 48
Q ss_pred EEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 662 AYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 662 ayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
+|++|++.++. .|++||+.++.. .+ +++.++.++..++.+.+. ....+||||||||++|||
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 141 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIA 141 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHH
Confidence 99999999887 599999987432 11 234555666666654432 345789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|++++|+++||||||++||+.+.+.+.+.
T Consensus 142 al~~~p~~lllDEP~~~LD~~~~~~~~~~ 170 (210)
T cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDV 170 (210)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 99999999999999999999999887663
No 130
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=2.4e-31 Score=265.95 Aligned_cols=128 Identities=27% Similarity=0.547 Sum_probs=117.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|++++|+. . ..++++ ++||+|++||.++|+||+|||||||+++|.|+++|.+| +|.++|.
T Consensus 1 i~~~~~~~~~~~---~-~~~~l~-~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---Q-EQQVLK-NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---C-CccceE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHH
Confidence 478999999965 1 236899 99999999999999999999999999999999999999 9999873
Q ss_pred --EEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 004004 661 --KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 661 --iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ 738 (779)
++|++|+|++++.|++||| ..+||||||||++||||+.++
T Consensus 75 ~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~ 116 (178)
T cd03247 75 SLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQD 116 (178)
T ss_pred hhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999998 578999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 739 SDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 739 adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|+++||||||++||+++.+.+++.
T Consensus 117 p~~lllDEP~~~LD~~~~~~l~~~ 140 (178)
T cd03247 117 APIVLLDEPTVGLDPITERQLLSL 140 (178)
T ss_pred CCEEEEECCcccCCHHHHHHHHHH
Confidence 999999999999999998876653
No 131
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-31 Score=281.32 Aligned_cols=162 Identities=26% Similarity=0.389 Sum_probs=134.6
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|++ .++++ ++||+|++||+++|+||+|||||||+++|.|.++ |++| +|.++|
T Consensus 12 ~~l~i~nl~~~~~~------~~il~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISYGT------FEAVK-NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKG-RVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEECC------EEEEc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcc
Confidence 46999999999964 45899 9999999999999999999999999999999987 5899 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCCC---C---HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~~---d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.++..|++||+.++..+ + +++.+++++.+++...++ +.......+||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 156 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLS 156 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCC
Confidence 38999999999999999999986432 1 234455666666543322 23455678899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||||++||||++++|+++||||||++||+.+.+++.+ .++.
T Consensus 157 ~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~ 199 (269)
T PRK14259 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHE 199 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999988765 3443
No 132
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4e-31 Score=275.56 Aligned_cols=162 Identities=27% Similarity=0.353 Sum_probs=132.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|++. ....++++ ++||+|++||.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 2 i~~~~l~~~~~~~--~~~~~il~-~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDT--GGKVTALK-DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCC--CCceeeee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHH
Confidence 6789999999641 00127899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|++.++. .|++|||.++.. .+ .++.++.++..+|.+.++. ...+||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~ 146 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQK 146 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHH
Confidence 2799999999986 699999987532 22 2344556666666544433 3468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
||++||||+.++|+++||||||++||+.+.+.+.+ .+....
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~ 187 (233)
T cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILA-LLRDIN 187 (233)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999987665 444443
No 133
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=8e-31 Score=267.32 Aligned_cols=156 Identities=25% Similarity=0.370 Sum_probs=134.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|+. .+.++ ++||+|++||+++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 1 l~i~~l~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERDG------RALFS-GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeCC------ceeec-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccccHHhh
Confidence 468999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred -eEEEEccccccC-CCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 -KKAYVPQSSWIQ-TGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 -~iayV~Q~pwI~-ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|++.++ +.|++||+.+..+ .++++.+++++..++.+.... ...+||||||||++||||++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~ 141 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLL 141 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHh
Confidence 389999999875 6899999987643 456788888999888754322 24679999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
++|+++||||||++||+.+.+.+.+ .+..
T Consensus 142 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~ 170 (201)
T cd03231 142 SGRPLWILDEPTTALDKAGVARFAE-AMAG 170 (201)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH-HHHH
Confidence 9999999999999999999887754 4443
No 134
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.5e-31 Score=283.79 Aligned_cols=158 Identities=25% Similarity=0.419 Sum_probs=133.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++|+|+... ....++++ |+||+|++||+++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 2 i~~~~v~~~y~~~~-~~~~~~l~-~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNS-PFASRALF-DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCC-ccccccee-eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEECcccccccc
Confidence 78999999997410 01136899 99999999999999999999999999999999999999 999887
Q ss_pred ------eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ------~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++||+|+| .+++.|+.|||.|+.. .+ ++++.++++..+|.+++. .....+||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgG 148 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGG 148 (288)
T ss_pred HHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHH
Confidence 279999998 8999999999998742 22 235677777777754332 2445789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||++||||++.+|+++||||||++||+.+.+.+.+
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~ 185 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999888765
No 135
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.6e-31 Score=282.25 Aligned_cols=161 Identities=27% Similarity=0.430 Sum_probs=134.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .+.++++ ++||+|++||+++|+||+|||||||+++|+|+++|.+| +|.++|
T Consensus 7 ~l~~~nl~~~~~~----~~~~il~-~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 7 MIKVENVSFSYPN----SENNALK-NVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG-EIKIDGITISKENLKE 80 (271)
T ss_pred EEEEEeEEEEcCC----CCcccee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCcCCHHH
Confidence 5899999999963 1356899 99999999999999999999999999999999999999 998877
Q ss_pred ---eEEEEcccc--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~p--wI~ngTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|+| .+++.|++|||.++.. ++++ +.+++++..+|.+.++. ...+|||||||
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~q 149 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQ 149 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHH
Confidence 379999998 4667899999988632 2333 35566777777665543 34699999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|++||||+.++|+++||||||++||+++.+.+++ .+....
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~~ 189 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDLR 189 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999888775 344433
No 136
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.6e-31 Score=284.54 Aligned_cols=155 Identities=30% Similarity=0.367 Sum_probs=128.8
Q ss_pred EeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------
Q 004004 593 IEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (779)
Q Consensus 593 ~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------- 659 (779)
++|++..|+. .++++ |+||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 27 ~~~~~~~~~~------~~il~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 27 KEEILKKTGQ------TVGVN-DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhcCC------ceEee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccChhhhhh
Confidence 3455555543 45799 99999999999999999999999999999999999999 998866
Q ss_pred ----eEEEEccccccC-CCcHHHHhccCCC---C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ----KKAYVPQSSWIQ-TGTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ----~iayV~Q~pwI~-ngTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++|++|++.++ +.|++|||.++.. . .+++.+++++.++|.+.+...| .+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~q 167 (269)
T cd03294 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQ 167 (269)
T ss_pred hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHH
Confidence 389999999998 5799999987521 1 1345677888888876666554 379999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++||||++++|+++||||||++||+++.+.+.+ ++...
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~ 206 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQD-ELLRL 206 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999987765 34433
No 137
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=5.7e-31 Score=270.74 Aligned_cols=149 Identities=28% Similarity=0.446 Sum_probs=129.3
Q ss_pred EEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-----------
Q 004004 592 DIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------- 660 (779)
Q Consensus 592 ~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~----------- 660 (779)
+++|+++.|+. .++ |+||++++|+.++|+||+|||||||+++|+|+++|.+| +|.++|.
T Consensus 2 ~~~~l~~~~~~--------~~~-~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 2 ALDKVRYEYEH--------LPM-EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG-SIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred eEEeeeEEeCC--------cce-eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEcccCChhccc
Confidence 68999999953 356 99999999999999999999999999999999999999 9998773
Q ss_pred EEEEccccccCC-CcHHHHhccCC-C-C-----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHH
Q 004004 661 KAYVPQSSWIQT-GTIRENILFGK-D-M-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (779)
Q Consensus 661 iayV~Q~pwI~n-gTIreNIlfG~-~-~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLA 732 (779)
++||+|+|.++. .|++||+.++. + . ++++.+++++..++.+.....| .+||||||||++||
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 140 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALA 140 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 899999999987 59999997642 1 1 2346677888888876666555 37999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 733 RAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||++++|+++||||||++||.++.+.+++
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~ 169 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLA 169 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 99999999999999999999999988765
No 138
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-30 Score=263.89 Aligned_cols=157 Identities=26% Similarity=0.408 Sum_probs=133.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.++++|.++.|+... ...++++ ++||+|.+||..+|+|+||||||||.++|+|..+|.+| +|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~--~~~~~l~-~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G-~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 3 LLSVRNLSIVYGGGK--FAFHALN-NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG-SILLDGKPLAPKKRAK 78 (252)
T ss_pred eEEEeceEEEecCCc--chhhhhc-ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc-eEEECCcccCccccch
Confidence 478999999998621 1125899 99999999999999999999999999999999999999 9999983
Q ss_pred -----EEEEcccccc---CCCcHHHHhcc-----CCCCCHHHHHHHHHHccchHH-HhhccCCCCccccCCCCCCChHHH
Q 004004 661 -----KAYVPQSSWI---QTGTIRENILF-----GKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 661 -----iayV~Q~pwI---~ngTIreNIlf-----G~~~d~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
+-+|+|||.= ..-||++-|.= |.+-.+++..++++..+|.+. ++..| ..||||||
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~ 147 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQR 147 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHH
Confidence 7899999983 44677776642 223345678899999999764 55666 56999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||||||.-+|+++||||||||||+.+.+.|.+
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~Iln 182 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILN 182 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHH
Confidence 99999999999999999999999999999999887
No 139
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=3.4e-31 Score=274.84 Aligned_cols=172 Identities=28% Similarity=0.372 Sum_probs=131.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+.. +...++++ ++||+|++||+++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 2 l~~~~v~~~~~~~--~~~~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTG--GGSVKALD-DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCC--Ccceeeec-CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccchhhH
Confidence 6899999999641 00126899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccc--c-CCCcHHHHhccCC-----CCCHHHHH----HHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----KKAYVPQSSW--I-QTGTIRENILFGK-----DMRQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----~iayV~Q~pw--I-~ngTIreNIlfG~-----~~d~~~y~----~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|+|. + .+.|++|||.++. ..+++..+ +.++..++.+ .....+..+||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 147 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELS 147 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcC
Confidence 3899999993 3 4689999997642 11112111 3334444421 23345567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||||++||||++++|+++||||||++||+++.+.+.+ .+....++ .++.++|
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH 204 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD-LLKKLQEELGLTLLFITH 204 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeC
Confidence 999999999999999999999999999999999877654 45444332 3344555
No 140
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7e-31 Score=281.03 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=137.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ...++++ ++||+|++||.++|+||+|||||||+++|.|..+|.+| +|.++|
T Consensus 5 ~l~~~~l~~~~~~----~~~~~l~-~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD----AATYALK-DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC----CCcccee-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHH
Confidence 5899999999963 2346899 99999999999999999999999999999999999999 999988
Q ss_pred ---eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++|++|+| .+++.|++|||.++.. .+ +++.+++++.++|.++++..| ..|||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~q 147 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQ 147 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHH
Confidence 379999998 5778999999998632 12 245677888888887776655 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|++||||+..+|+++||||||++||+.+.+.+++ ++..+-
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~ 187 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLK 187 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999987765 344443
No 141
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.1e-31 Score=293.02 Aligned_cols=161 Identities=25% Similarity=0.371 Sum_probs=136.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|++++|++ .++++ ++||+|++||+++|+||+||||||||++|.|+.+|.+| +|.++|.
T Consensus 18 ~~l~l~~v~~~~~~------~~~l~-~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSFDG------QHAVD-DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHH
Confidence 35999999999964 35799 99999999999999999999999999999999999999 9999883
Q ss_pred ---EEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 661 ---KAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 661 ---iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
++||+|++-+|. .|++|||.|+.. .+ +++.+++++..+|.+..+..| .+||||||||+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRV 158 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRV 158 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHH
Confidence 899999999996 599999998742 22 235567777777765554444 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
+||||+..+|+++|||||||+||+++.+.+.+. +..+++
T Consensus 159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~ 197 (377)
T PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILE 197 (377)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999887653 444444
No 142
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.2e-31 Score=283.10 Aligned_cols=159 Identities=21% Similarity=0.448 Sum_probs=130.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+... ....++|+ |+||+|++||+++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGT-PYEHQAIH-DVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCC-ccccCcee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccc
Confidence 378999999996410 01246899 99999999999999999999999999999999999999 998876
Q ss_pred -------eEEEEcccc--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 -------~iayV~Q~p--wI~ngTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++||+|+| .+++.|++|||.|+.. ++.+ +.+++++.++|..+. ......+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSg 148 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSG 148 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCH
Confidence 379999998 6888999999998732 2332 334455555553221 2345679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||++||||++.+|+++||||||++||+.+.+.+.+
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~ 186 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR 186 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999988765
No 143
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5e-31 Score=280.54 Aligned_cols=162 Identities=30% Similarity=0.397 Sum_probs=136.6
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|+. .++++ |+||++++||.++|+|++|||||||+++|.|+++ |++| +|.++|
T Consensus 19 ~~l~~~nl~~~~~~------~~il~-~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~ 90 (267)
T PRK14237 19 IALSTKDLHVYYGK------KEAIK-GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG-QILYRGIDIN 90 (267)
T ss_pred eEEEEeeEEEEECC------eeeEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce-EEEECCEEcc
Confidence 46999999999954 46899 9999999999999999999999999999999996 4799 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++..|++|||.++.. .+ +++..++++.++|.++++ +..+....+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~ 163 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALT 163 (267)
T ss_pred cccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCccc
Confidence 3799999999999999999987532 12 234566777887765543 234567789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+..
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~ 208 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFE 208 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999887665 4443
No 144
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=5.2e-31 Score=272.50 Aligned_cols=157 Identities=27% Similarity=0.438 Sum_probs=127.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. .++++ ++||++++||.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYGK------SQILF-GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecCC------eeEee-eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCCCCHHHH
Confidence 468999999964 36899 99999999999999999999999999999999999999 999876
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCCCCC-----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGKDMR-----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~~~d-----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|++|++.++.+ |++||+.++.... +++.+++++... .++ .....+..+||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~----~~~~~~~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLK----ERRKQLAGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhh----hhhhCchhhCCHHHHHHHH
Confidence 28999999998886 9999998864421 112233333331 111 2233556789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||+.++|+++||||||++||+++.+.+.+ .+..
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~ 177 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFE-AIRE 177 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999887665 3443
No 145
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=5.1e-31 Score=275.37 Aligned_cols=158 Identities=21% Similarity=0.374 Sum_probs=130.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||+|++||.++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYGA------RRALD-DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG-QISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcccCChhhh
Confidence 678999999964 46899 99999999999999999999999999999999999999 999877
Q ss_pred -eEEEEcccccc-CCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWI-QTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI-~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|++|++.+ ++.|++||+.++.. .++ ++.++.++..+|. .....+..+||||||||++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~ 142 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVE 142 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHH
Confidence 38999999987 67899999987532 222 2233444444443 3345566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
||||+.++|+++||||||++||+.+.+.+.+ .+....
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 179 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVA-HVRALC 179 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999998775 444443
No 146
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=280.67 Aligned_cols=163 Identities=24% Similarity=0.363 Sum_probs=136.1
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC---
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g--- 659 (779)
+..|+++|++++|++ .++++ |+||+|++|++++|+|++|||||||+++|.|+++| .+| +|.++|
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~I~~~g~~i 88 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALF-DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG-KITLDGEDI 88 (267)
T ss_pred CceEEEEeEEEEECC------EEEEE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEEC
Confidence 457999999999964 46899 99999999999999999999999999999999975 899 998876
Q ss_pred ------------eEEEEccccccCCCcHHHHhccCCC---C--C----HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---M--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ------------~iayV~Q~pwI~ngTIreNIlfG~~---~--d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|+|.+++.|++|||.|+.. . + +++.+++++.+++.+++. +.....+
T Consensus 89 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 161 (267)
T PRK14235 89 YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPG 161 (267)
T ss_pred cccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCc
Confidence 2799999999999999999987531 1 1 234566777777765442 1234567
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
.+||||||||++||||++.+|+++||||||++||+++.+.+.+ ++..
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~ 208 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDE 208 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHH
Confidence 8999999999999999999999999999999999999887654 4443
No 147
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=7.2e-31 Score=271.68 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=130.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|+. +.++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~-----~~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG-----GRQALQ-GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG-KIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC-----CCeEEe-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCChhHH
Confidence 688999999943 146899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEcccccc-CCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWI-QTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI-~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|+|.+ ++.|++|||.++.. .++ ++.++.++..++.++++. ...+||||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~ 143 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQ 143 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHH
Confidence 27999999987 67899999987531 222 234456666666554433 3468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||++||||++++|+++||||||++||+.+.+.+.+ ++...
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 183 (222)
T PRK10908 144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEF 183 (222)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999887765 44443
No 148
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=5.2e-31 Score=269.32 Aligned_cols=155 Identities=28% Similarity=0.396 Sum_probs=129.1
Q ss_pred EeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------
Q 004004 593 IEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (779)
Q Consensus 593 ~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------- 659 (779)
++|+++.|++ .++++ |+||++++||+++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 1 i~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFGD------KIILD-DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG-QVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEECC------EEEEe-ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccchhhHHH
Confidence 4688999864 46899 99999999999999999999999999999999999999 998865
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC---C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++|++|++.++. .|++||+.++.. . .+++.+++++..++.++.+ ....+|||||||
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~q 141 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQ 141 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHH
Confidence 3899999999986 799999987532 1 1345566777777755433 234679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 180 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLD-LLLEL 180 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999887655 34443
No 149
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.3e-31 Score=284.88 Aligned_cols=162 Identities=27% Similarity=0.399 Sum_probs=135.6
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..|+++|++++|++ .++|+ ++||+|++||+++|+|++|||||||+++|.|.++ |.+| +|.++|
T Consensus 44 ~~l~i~nl~~~~~~------~~iL~-~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G-~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYYGD------DHALK-GVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDG-SVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEeCC------eeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcc
Confidence 35899999999964 46899 9999999999999999999999999999999986 5899 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCCC--------------------CHHHHHHHHHHccchHHHhhccC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM--------------------RQSFYEEVLEGCALNQDIEMWAD 708 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~~--------------------d~~~y~~vl~ac~L~~di~~Lp~ 708 (779)
.++||+|++.++++|++|||.++... .+++.+++++.+++.+++
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 190 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV----- 190 (305)
T ss_pred cccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-----
Confidence 38999999999999999999976321 123456666666665443
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 709 Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
++...++..+||||||||++||||++++|+|+||||||++||+.+.+.+.+ .+..
T Consensus 191 --~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~ 245 (305)
T PRK14264 191 --NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEE 245 (305)
T ss_pred --hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 344567788999999999999999999999999999999999999887654 3443
No 150
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=278.89 Aligned_cols=162 Identities=23% Similarity=0.344 Sum_probs=133.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g----- 659 (779)
.++++|++|+|+. .++++ ++||+|++||+++|+|++|||||||+++|.|+++ +.+| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~-~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSYGN------YEALH-GISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG-EIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEECC------eeeee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcce-EEEECCEEccc
Confidence 4889999999964 46899 9999999999999999999999999999999996 4799 998876
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCCC----C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++|||.++... + +++.+++++.+++.++.+ ........+|
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 148 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAF 148 (251)
T ss_pred ccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhC
Confidence 28999999999999999999875321 1 234566677777643221 1234567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 193 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMEL 193 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999877654 44443
No 151
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=6.4e-31 Score=261.71 Aligned_cols=124 Identities=35% Similarity=0.636 Sum_probs=115.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. ...++++ ++||++++||.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 i~~~~l~~~~~~----~~~~~l~-~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG----AEPPVLR-NVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC----CCCccee-eeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHH
Confidence 468999999964 1246899 99999999999999999999999999999999999999 999887
Q ss_pred --eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
.++|++|+|+++++|++||+ ||||||||++||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 75 GDHVGYLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYG 113 (173)
T ss_pred HhheEEECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhc
Confidence 38999999999999999998 99999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 738 NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 738 ~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+|+++||||||++||+++.+.+.+
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~ 137 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQ 137 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHH
Confidence 999999999999999999998765
No 152
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.7e-31 Score=290.09 Aligned_cols=156 Identities=26% Similarity=0.342 Sum_probs=130.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+.. +.+.++++ |+||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 2 i~i~~l~~~y~~~--~~~~~il~-~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG--GRTIHALN-NVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG-RVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC--CCceEEEE-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHH
Confidence 6899999999730 11246899 99999999999999999999999999999999999999 999876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++||+|++.++. .|++|||.++.. .++ ++.++.++..+|.+..+ ....+||||||
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~ 146 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQK 146 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHH
Confidence 3899999999886 799999987632 222 34455666666654433 33468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||++||||+.++|+++|||||||+||+.+.+.+.+
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~ 181 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999988765
No 153
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.2e-31 Score=278.36 Aligned_cols=161 Identities=30% Similarity=0.406 Sum_probs=133.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc---ccC--CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe---~~~--~~G~~I~i~g----- 659 (779)
.++++|+++.|++ .++++ ++||+|++||.++|+|++|||||||+++|.|. .++ ++| +|.++|
T Consensus 3 ~l~~~~~~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALK-GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG-EIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEECC------EeEEe-eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce-EEEECCEeccc
Confidence 5889999999964 45899 99999999999999999999999999999996 454 489 998876
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----C----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++|||.++.. . .+++.+++++.++|.++++ +...+.+.+|
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 147 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFAL 147 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccC
Confidence 3899999999999999999987532 1 1234567777777765443 2334667899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .+..
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~ 191 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHE 191 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999988654 3443
No 154
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.2e-31 Score=280.99 Aligned_cols=161 Identities=27% Similarity=0.379 Sum_probs=136.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCC---CCeEEEcC------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG------ 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~---G~~I~i~g------ 659 (779)
..++++|++++|++ ...++++ ++||+|++||.++|+||+|||||||+++|.|+++|.+ | +|.++|
T Consensus 4 ~~l~i~~l~~~~~~----~~~~~l~-~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G-~i~i~g~~~~~~ 77 (282)
T PRK13640 4 NIVEFKHVSFTYPD----SKKPALN-DISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS-KITVDGITLTAK 77 (282)
T ss_pred ceEEEEEEEEEcCC----CCcccee-eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCc-EEEECCEECCcC
Confidence 46899999999964 1246899 9999999999999999999999999999999999988 8 998877
Q ss_pred -------eEEEEccccc--cCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 -------KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 -------~iayV~Q~pw--I~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++||+|+|+ +++.|++|||.|+.+ .++ ++.+++++.++|.+.....| .+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~ 146 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSG 146 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCH
Confidence 3799999994 778999999998632 222 34667788888876555444 69999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 147 G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l 189 (282)
T PRK13640 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKL 189 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999988765 34443
No 155
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-31 Score=277.45 Aligned_cols=161 Identities=24% Similarity=0.387 Sum_probs=132.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc--C---CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~--~---~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ ++||+|++||.++|+||+|||||||+++|.|..+ | .+| +|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~-~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALN-SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG-SIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEECC------eeeee-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-eEEECCEECcC
Confidence 4899999999964 46899 9999999999999999999999999999999853 5 489 898876
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++||+|++.+++.|++||+.++.. .+ +++.+++++.+++.+.+. +.......+|
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 149 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGL 149 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccC
Confidence 3899999999999999999987521 11 123445566666654332 2345667899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||+.++|+++||||||++||+++.+.+++ .+..
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~ 193 (252)
T PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLG 193 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999988765 4443
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8e-31 Score=282.12 Aligned_cols=173 Identities=23% Similarity=0.322 Sum_probs=134.8
Q ss_pred ccEEEeeeEEEeccccccC--CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------
Q 004004 589 VAIDIEAGEYAWDAREENF--KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~--~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------- 659 (779)
+.|+++|++++|+. .. ..++++ |+||+|++||.++|+||+|||||||+++|+|.++|.+| +|.++|
T Consensus 5 ~~l~i~nl~~~~~~---~~~~~~~il~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~ 79 (289)
T PRK13645 5 KDIILDNVSYTYAK---KTPFEFKALN-NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG-QTIVGDYAIPANL 79 (289)
T ss_pred ceEEEEEEEEEeCC---CCccccceee-eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEccccc
Confidence 45899999999964 21 135899 99999999999999999999999999999999999999 898765
Q ss_pred -----------eEEEEccccc--cCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 -----------KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 -----------~iayV~Q~pw--I~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++|++|+|. +++.|++|||.|+.. .+. ++.+++++..+|.++ .......
T Consensus 80 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~ 149 (289)
T PRK13645 80 KKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPF 149 (289)
T ss_pred cccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChh
Confidence 3799999984 678899999988642 222 122334444444221 1234567
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
+||||||||++||||++++|+++||||||++||+++.+.+.+ .+....++ .++.|+|
T Consensus 150 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLNKEYKKRIIMVTH 209 (289)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEec
Confidence 899999999999999999999999999999999999877654 45444432 3455555
No 157
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.3e-31 Score=281.28 Aligned_cols=158 Identities=26% Similarity=0.395 Sum_probs=133.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|+. .++++ ++||+|++|++++|+|++|||||||+++|.|.++ |.+| +|.++|
T Consensus 38 ~~l~i~~l~~~~~~------~~il~-~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFYGD------EQALD-DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG-ELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEECC------EeeEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEcc
Confidence 45899999999964 46899 9999999999999999999999999999999987 5899 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---C---CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.++..|++|||.++.. . .+++.+++++..++.+.++. ...++..+||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS 182 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLS 182 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCC
Confidence 3799999999999999999987521 1 23456667777776544431 2346678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||++||||++++|+|+|||||||+||+.+.+.+.+
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~ 221 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED 221 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999987754
No 158
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=9.7e-31 Score=272.37 Aligned_cols=157 Identities=27% Similarity=0.434 Sum_probs=129.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||++++|++++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYGK------RKVVN-GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeCC------EEeec-cceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccCCHhHH
Confidence 468999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++|++|++.++.+ |++||+.++.+ .++ ++.++.++..++. ........+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr 141 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRR 141 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHH
Confidence 28999999998886 99999987532 121 2334444444443 23345567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
++||||+.++|+++||||||++||+.+.+.+.+ .+...
T Consensus 142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~ 179 (232)
T cd03218 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKIL 179 (232)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999887765 34433
No 159
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.3e-31 Score=276.07 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=134.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ |+||+|++||+++|+|++|||||||+++|.|..++ ++| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALK-KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG-EVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEECC------ceeee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccc
Confidence 4889999999964 46899 99999999999999999999999999999998763 689 998876
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCCC----C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++|||.++... + +++.+++++.+++.+++. ........+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 147 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGL 147 (250)
T ss_pred cccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCC
Confidence 37999999999999999999986321 1 234556666777655443 2234567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ ++...
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 192 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQEL 192 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988754 45443
No 160
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9e-31 Score=276.02 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=135.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
-++++|+++.|+. .++++ |+||+|++||.++|+|++|||||||+++|+|..+| .+| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~ 75 (251)
T PRK14270 4 KMESKNLNLWYGE------KQALN-DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG-EVLLDGKNIYD 75 (251)
T ss_pred EEEEEEeEEEECC------eeeee-ceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCcc-EEEECCEeccc
Confidence 4789999999964 46899 99999999999999999999999999999999875 789 998876
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCCC----C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.++..|++||+.|+... + +++.+++++.++|.++++. ....+...|
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~L 148 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKL 148 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccC
Confidence 28999999999999999999976321 2 2345677888877654432 233567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++|||||||+||+.+...+.+ .+...
T Consensus 149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~ 193 (251)
T PRK14270 149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVEL 193 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988755 45443
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9e-31 Score=274.48 Aligned_cols=158 Identities=25% Similarity=0.340 Sum_probs=129.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. .++++ |+||++++||.++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 2 ~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEECC------eeeEe-eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecccccccc
Confidence 3789999999964 46899 99999999999999999999999999999999999999 998865
Q ss_pred ---------eEEEEccccccCC-CcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ---------KKAYVPQSSWIQT-GTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ---------~iayV~Q~pwI~n-gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++-++. .|++|||.++. ..+ +++..+.++..++.+.+.. ...+|
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 142 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHL 142 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhC
Confidence 2799999999886 49999997421 111 2234555555555444433 34689
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ ++...
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~ 187 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIREL 187 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999887765 45443
No 162
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.6e-31 Score=276.77 Aligned_cols=170 Identities=28% Similarity=0.386 Sum_probs=134.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ . .++++ ++||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~---~--~~~l~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG---G--KKAVN-NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC---c--ceEee-eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHh
Confidence 468999999964 1 46899 99999999999999999999999999999999999999 998876
Q ss_pred --eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 660 --KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 660 --~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
.++|++|+|.++. .|++||+.++.. .+ +++.+++++..++.+. ......+.+||||||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv 144 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRV 144 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHH
Confidence 3799999999985 799999987532 22 2344555555555430 122355688999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
+||||++++|+++||||||++||+++.+.+.+ .+....++ .++.++|
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQE-EFKRLQQELGKTIVFVTH 194 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEec
Confidence 99999999999999999999999999876654 44444332 3455555
No 163
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-31 Score=279.65 Aligned_cols=163 Identities=27% Similarity=0.347 Sum_probs=132.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|++ .++++ ++||+|++||+++|+|++|||||||+++|.|+.+ |.+| +|.++|
T Consensus 20 ~~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~ 91 (268)
T PRK14248 20 HILEVKDLSIYYGE------KRAVN-DISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG-EILYEGLNIL 91 (268)
T ss_pred ceEEEEEEEEEeCC------ceeee-ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCce-EEEECCEEcc
Confidence 35899999999964 46899 9999999999999999999999999999999864 6899 898765
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCCC----C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++++|++||+.++..+ . +++.+++++.+++.+++. ........+
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 164 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALS 164 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCccc
Confidence 38999999999999999999875321 1 223445555565543222 233566789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 210 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITEL 210 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999988754 44433
No 164
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=274.48 Aligned_cols=162 Identities=27% Similarity=0.391 Sum_probs=133.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC-----CCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-----~G~~I~i~g----- 659 (779)
.++++|++++|+. .++++ ++||+|++|++++|+||+|||||||+++|.|+++|. +| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~-~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~ 75 (251)
T PRK14249 4 KIKIRGVNFFYHK------HQVLK-NINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG-AVLLDNENIYS 75 (251)
T ss_pred eEEEEEEEEEECC------eeEec-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCccc-EEEECCEEccc
Confidence 5889999999964 46899 999999999999999999999999999999999987 58 887755
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCCC----CH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++||+|+|.+++.|++|||.++..+ .+ ++.+++++..++.+.++ +....++.+|
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 148 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLAL 148 (251)
T ss_pred cccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccC
Confidence 38999999999999999999986421 11 23344455555543332 3355678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++||||||++||+.+...+.+ .+...
T Consensus 149 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 193 (251)
T PRK14249 149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQEL 193 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999987655 44433
No 165
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=8.8e-31 Score=274.22 Aligned_cols=157 Identities=29% Similarity=0.395 Sum_probs=130.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ |+||++++||+++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~-~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFGP------TQVLH-NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG-DLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEECC------eEEee-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCChhHH
Confidence 678999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC----CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|++.++. .|++||+.++.. .+. ++..++++..+|++.++ .+...||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 142 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQ 142 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHH
Confidence 3799999998875 699999987631 222 23445555555544333 34468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||++||||++++|+++||||||++||+++.+.+.+ .+...
T Consensus 143 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 182 (240)
T PRK09493 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDL 182 (240)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999987766 45443
No 166
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.1e-30 Score=262.62 Aligned_cols=170 Identities=25% Similarity=0.409 Sum_probs=145.0
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
+..|+++++++++.+ +.+++ |+||+|++||.++|+|+|||||||||++|+|+.+|++| +|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild-~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILD-GVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG-EILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeecCC------EEEec-CceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCC-eEEEcCcchhccCH
Confidence 357999999999975 57899 99999999999999999999999999999999999999 999988
Q ss_pred --------eEEEEccccccCC-CcHHHHhccC----CCCCHHHHHH----HHHHccchHH-HhhccCCCCccccCCCCCC
Q 004004 660 --------KKAYVPQSSWIQT-GTIRENILFG----KDMRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 --------~iayV~Q~pwI~n-gTIreNIlfG----~~~d~~~y~~----vl~ac~L~~d-i~~Lp~Gd~T~IGE~G~nL 721 (779)
+++++.|+.-||+ -||+||+.|. ...+++.+++ -+++++|..+ .+.+| ..|
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sEL 146 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SEL 146 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhh
Confidence 4899999999997 6999999994 2355665554 3578999888 77777 579
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||.+.|+|||||+..||+|+++|||||+||+.++. .|++.|+.+-++ -+++|+|
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTH 204 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTH 204 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEEC
Confidence 999999999999999999999999999999999885 566677544333 2445555
No 167
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-31 Score=279.38 Aligned_cols=162 Identities=28% Similarity=0.398 Sum_probs=135.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g---- 659 (779)
..++++|++++|++ .++++ |+||+|++||.++|+|++|||||||+++|.|.+++ .+| +|.++|
T Consensus 24 ~~l~~~nl~~~~~~------~~il~-~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~i~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLFYGD------KQALF-DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEEECC------eeEee-eEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCce-EEEECCEECc
Confidence 46999999999964 46899 99999999999999999999999999999999874 799 898765
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---C-C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~-d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++++|++|||.++.. . . +++.+++++..++.+++. +..+.++.+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 168 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFG 168 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCccc
Confidence 3799999999999999999987532 1 1 234566677777765443 244677889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||||||++||||++++|+++||||||++||+.+...+.+ .+..
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~ 213 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITE 213 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999877644 4443
No 168
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.9e-31 Score=282.88 Aligned_cols=158 Identities=22% Similarity=0.340 Sum_probs=130.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|++.. ....++++ ++||+|++||.++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 3 i~~~~l~~~y~~~~-~~~~~~l~-~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 3 IKVKNIVKIFNKKL-PTELKALD-NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEECCCC-Ccccccee-eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEEeceeccccccccc
Confidence 78999999997410 01236899 99999999999999999999999999999999999999 998753
Q ss_pred --------------------------eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHh
Q 004004 660 --------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIE 704 (779)
Q Consensus 660 --------------------------~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~ 704 (779)
.++||+|+| .++..|++|||.|+.. .+ +++.+++++.++|.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~- 158 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY- 158 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh-
Confidence 279999986 6888999999998742 22 23456777777775332
Q ss_pred hccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 705 ~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
......+||||||||++||||+..+|+++||||||++||+.+.+.+.+
T Consensus 159 ---------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~ 206 (305)
T PRK13651 159 ---------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE 206 (305)
T ss_pred ---------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 124457899999999999999999999999999999999998877655
No 169
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.3e-31 Score=277.59 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=132.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|+++.|+. .++++ ++||+|++||+++|+|++|||||||+++|.|+++| ++| +|.++|
T Consensus 12 ~l~i~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G-~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWYGQ------HHALK-NINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG-EMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEECC------eeeEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-EEEECCEEccc
Confidence 5899999999964 46899 99999999999999999999999999999999873 589 998765
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCCC----CH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++||+.|+... ++ ++.+++++..++.+++. +.....+.+|
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~L 156 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSL 156 (259)
T ss_pred cccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccC
Confidence 27999999999999999999876421 22 23445566666654432 2334567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++||||||++||+++...+. +++...
T Consensus 157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 201 (259)
T PRK14274 157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKL 201 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999988765 445443
No 170
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=279.88 Aligned_cols=160 Identities=22% Similarity=0.353 Sum_probs=135.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. +.++++ ++||+|++||.++|+|++|||||||+++|.|.++|.+| +|.++|
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~-~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALK-GININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG-RILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCEECCCCcchH
Confidence 5899999999963 246899 99999999999999999999999999999999999999 999887
Q ss_pred -----eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 -----~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|+| .+++.|++|||.++.. ++ +++.+++++.++|.+.. .....+|||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~ 146 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQ 146 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHH
Confidence 279999998 6789999999987532 12 24567777777776433 24578999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|||++||||++.+|+++||||||++||+.+.+.+.+ .+..+.
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~-~l~~l~ 188 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK-LLVEMQ 188 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999987665 344443
No 171
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.9e-30 Score=264.34 Aligned_cols=152 Identities=24% Similarity=0.346 Sum_probs=128.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||++++||+++|+|++|||||||+++|.|+.+|++| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~-~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYHD------QPLLQ-QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeCC------eeEEe-eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHH
Confidence 678999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred -eEEEEccccccC-CCcHHHHhccCCC--CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 660 -KKAYVPQSSWIQ-TGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 660 -~iayV~Q~pwI~-ngTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
.++|++|++.++ +.|++||+.++.. .++++.+++++..++.+..+ . ...+||||||||++||||+
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~~rv~laral 142 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-------Y----PCGLLSSGQKRQVALLRLW 142 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-------C----ChhhcCHHHHHHHHHHHHH
Confidence 389999999885 6899999998632 23445566666666543222 1 2246999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.++|+++||||||++||+.+.+.+.+
T Consensus 143 ~~~p~~lilDEP~~~LD~~~~~~l~~ 168 (200)
T PRK13540 143 MSKAKLWLLDEPLVALDELSLLTIIT 168 (200)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 99999999999999999999987655
No 172
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.3e-30 Score=265.11 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=131.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. .++++ ++||+|++|+.++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFE-GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG-EVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEECC------EEEEe-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccchHHhh
Confidence 468999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCCC---CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++|++|++.++. .|++||+.++.+. ++++.+++++..++.+.++. ...+||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARL 141 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHH
Confidence 3789999998876 7999999765322 23457788888888765432 235799999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
++++|+++||||||++||+.+.+.+ .+.++..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~ 173 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALL-AGLLRAH 173 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHH
Confidence 9999999999999999999987655 4455443
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-30 Score=276.28 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=134.1
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..++++|++++|++ .++++ ++||++++|++++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 10 ~~l~i~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVPG------RTLLH-PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG-EILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEECC------EEEEe-eeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEehhhCCHH
Confidence 46999999999964 36899 99999999999999999999999999999999999999 999987
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC-----------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++|++|++-++. .|++||+.++.. .++++.+++++.+++.+.++..| .+|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSg 150 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSG 150 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCH
Confidence 3899999976655 599999987521 12345677888888866555433 47999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||++||||+..+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l 193 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRL 193 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999987654 34443
No 174
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=275.22 Aligned_cols=158 Identities=19% Similarity=0.320 Sum_probs=130.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.++++|+++.|++ .++++ ++||++++|++++|+||+|||||||+++|.|+++|++| +|.++|.
T Consensus 5 ~l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFGG------LLAVN-NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG-TILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEECC------EEEEE-eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc-eEEECCEECCCCCHHH
Confidence 5899999999964 46899 99999999999999999999999999999999999999 9998872
Q ss_pred -----EEEEccccccCCC-cHHHHhccCCC----------------CC------HHHHHHHHHHccchHHHhhccCCCCc
Q 004004 661 -----KAYVPQSSWIQTG-TIRENILFGKD----------------MR------QSFYEEVLEGCALNQDIEMWADGDLS 712 (779)
Q Consensus 661 -----iayV~Q~pwI~ng-TIreNIlfG~~----------------~d------~~~y~~vl~ac~L~~di~~Lp~Gd~T 712 (779)
++|++|+|.++.+ |++|||.++.. .+ .++.++.++..++ +.
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~ 145 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------LE 145 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------hh
Confidence 7899999999885 99999997631 00 0122333333333 33
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
....+..+||||||||++||||++.+|+++||||||++||+.+.+.+.+ .+...
T Consensus 146 ~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~ 199 (255)
T PRK11300 146 HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAEL 199 (255)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHH
Confidence 3456678999999999999999999999999999999999999987755 34443
No 175
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=270.18 Aligned_cols=156 Identities=23% Similarity=0.391 Sum_probs=132.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. . .. ++||+|++|+.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 2 l~~~~l~~~~~~------~--~~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH------L--PM-RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASG-SLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC------c--cc-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCeecCcCChhhc
Confidence 679999999964 1 24 89999999999999999999999999999999999999 999887
Q ss_pred eEEEEccccccCCC-cHHHHhccCC-C------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 KKAYVPQSSWIQTG-TIRENILFGK-D------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ~iayV~Q~pwI~ng-TIreNIlfG~-~------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|++-++.+ |++|||.++. + .++++.+++++..++.+.++..| ..||||||||++|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 140 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVAL 140 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHH
Confidence 38999999998875 9999998752 1 12345677888888877666655 3799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|||+.++|+++||||||++||+.+.+.+.+ .+....
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~-~l~~~~ 176 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLT-LVSQVC 176 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999987765 344433
No 176
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=275.29 Aligned_cols=158 Identities=25% Similarity=0.331 Sum_probs=130.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ ++||+|++||.++|+|++|||||||+++|.|+++| ++| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLD-GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG-EVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEECC------eeeee-cceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCce-EEEECCEECCc
Confidence 4789999999964 46899 99999999999999999999999999999999974 699 998877
Q ss_pred --------eEEEEcccccc-CCCcHHHHhccCCCC-----C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 --------KKAYVPQSSWI-QTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 --------~iayV~Q~pwI-~ngTIreNIlfG~~~-----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|+|-+ ++.|++||+.++... + +++.+++++.++|.+.++ ........+|
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 147 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKL 147 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccC
Confidence 38999999974 578999999876321 1 234556677777654322 1123445789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|||||||++||||+.++|+++||||||++||+.+.+.+.+-
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~ 188 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 177
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-30 Score=274.16 Aligned_cols=152 Identities=28% Similarity=0.482 Sum_probs=130.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------eEE
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKA 662 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------~ia 662 (779)
++++|+++.|++ .++++ |+||+|++|++++|+||+|||||||+++|.|.++|++| +|.++| .++
T Consensus 2 l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG------KPALE-DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeCC------eeeEe-eeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCCcEE
Confidence 688999999964 46899 99999999999999999999999999999999999999 999987 379
Q ss_pred EEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 663 YVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 663 yV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
|++|++.++. .|++||+.++.. .+ +++.+++++..+|.+..+ ....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999886 699999987531 22 234566777777754433 2457899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+..+|+++||||||++||+.+.+.+.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~ 169 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQT 169 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 999999999999999999999887765
No 178
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=275.04 Aligned_cols=163 Identities=26% Similarity=0.382 Sum_probs=135.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|++++|++ .++++ |+||+|++||+++|+|++|||||||+++|.|.++ +.+| +|.++|
T Consensus 9 ~~l~i~~v~~~~~~------~~il~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~ 80 (264)
T PRK14243 9 TVLRTENLNVYYGS------FLAVK-NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEG-KVTFHGKNLY 80 (264)
T ss_pred eEEEEeeeEEEECC------EEEee-cceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCce-EEEECCEEcc
Confidence 35899999999964 36899 9999999999999999999999999999999876 3789 898876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCCC------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.+++.|++|||.++... .+++.+++++.+++.++++. .....+.+||
T Consensus 81 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS 153 (264)
T PRK14243 81 APDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLS 153 (264)
T ss_pred ccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCC
Confidence 38999999999999999999886431 12445666777777665532 2356678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||++||||++++|+++||||||++||+++.+.+.+ .+...
T Consensus 154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 197 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHEL 197 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988654 44433
No 179
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.1e-30 Score=264.88 Aligned_cols=152 Identities=25% Similarity=0.312 Sum_probs=132.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. .++++ |+||+|++||+++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERDE------RILFS-GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG-EVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEECC------EEEEe-cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccchHHhh
Confidence 678999999964 35899 99999999999999999999999999999999999999 999887
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCC----CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++|++|++.++. .|++|||.++.+ .++++.+++++..+|.+..+. ...+||||||||++|||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHH
Confidence 3899999998775 699999987643 245677888898888755432 34679999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|++++|+++||||||++||+.+.+.+.+
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~ 170 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEA 170 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 9999999999999999999999988754
No 180
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=276.85 Aligned_cols=154 Identities=26% Similarity=0.397 Sum_probs=131.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. +.++++ |+||+|++||.++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~-----~~~~l~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD-----GTPALE-NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC-----CCceee-eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEECCccccHHH
Confidence 678999999953 245899 99999999999999999999999999999999999999 998876
Q ss_pred ---eEEEEccccc--cCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~pw--I~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|+|. +++.|++|||.|+.. .+ +++.+++++.++|.+..+ .....|||||||
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~q 143 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQ 143 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHH
Confidence 2799999986 578899999988642 22 344566677777765443 334689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|++||||++++|+++||||||++||+.+...+.+.
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 178 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999998877654
No 181
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=251.64 Aligned_cols=148 Identities=24% Similarity=0.358 Sum_probs=126.6
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEccccccCCCc
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGT 674 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI~ngT 674 (779)
+.++|+ ++||++.+||.++|+||||||||||++.+.-..+|++| .+...| .++||.|+|-+|-+|
T Consensus 15 ~a~il~-~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G-~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 15 DAKILN-NISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred CCeeec-ceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCc-eEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 468899 99999999999999999999999999999999999999 999888 389999999999999
Q ss_pred HHHHhccCC-----CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 675 IRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 675 IreNIlfG~-----~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
|.||+.|.- ..|.+.....++..+|. ++....+-.+||||+||||||+|-|---|+|+|||||||
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 999999963 34555555555555443 455567788999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhHHH
Q 004004 750 AVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 750 ALDa~t~~~If~~~i~g~L 768 (779)
|||.++.++|-+ .|....
T Consensus 163 ALD~~nkr~ie~-mi~~~v 180 (223)
T COG4619 163 ALDESNKRNIEE-MIHRYV 180 (223)
T ss_pred hcChhhHHHHHH-HHHHHh
Confidence 999999988743 343333
No 182
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=1.8e-30 Score=276.49 Aligned_cols=159 Identities=26% Similarity=0.359 Sum_probs=131.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. .++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 7 ~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTRGN------RCIFD-NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG-EILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccChhh
Confidence 5899999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred ------eEEEEccccccCCC-cHHHHhccCC----CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ------KKAYVPQSSWIQTG-TIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ------~iayV~Q~pwI~ng-TIreNIlfG~----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++|++|++.++.+ |++|||.++. ..++ ++..+.++..++.+..+. ...+||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG 147 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGG 147 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHH
Confidence 27999999999886 9999998642 1222 234455666666543322 34689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
||||++||||+.++|+++||||||++||+.+.+.+.+ .+....
T Consensus 148 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~ 190 (269)
T PRK11831 148 MARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK-LISELN 190 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999887654 444443
No 183
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=275.45 Aligned_cols=161 Identities=27% Similarity=0.376 Sum_probs=134.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ |+||+|++||.++|+|++|||||||+++|.|..+ +.+| +|.++|
T Consensus 3 ~l~~~~v~~~~~~------~~~l~-~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILK-NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG-HIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEeCC------eEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCcc-EEEECCEEccc
Confidence 4789999999964 46899 9999999999999999999999999999999864 3789 898776
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|+|++|+.|++|||.++.. .+ ++++.+.++.+++.++++.+ ..+.+.+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~L 147 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGL 147 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccC
Confidence 2899999999999999999987521 12 24566778888887665432 34567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||++++|+++||||||++||+++.+.+.+ .+..
T Consensus 148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~ 191 (250)
T PRK14266 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHK 191 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999887654 4443
No 184
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=275.12 Aligned_cols=161 Identities=27% Similarity=0.374 Sum_probs=132.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.|+++|++++|++ .++|+ |+||+|++||+++|+||+|||||||+++|.|..++ ++| +|.++|
T Consensus 6 ~i~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWYGE------KHALY-DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG-DILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEECC------eeeee-eeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEccc
Confidence 5899999999964 46899 99999999999999999999999999999998753 489 898765
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCCC----CH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++|||.|+... +. ++..++++..++.+++. +..++.+.+|
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 150 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSL 150 (253)
T ss_pred cccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhC
Confidence 37999999999999999999986431 11 23344555555544432 3456778899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .+..
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~ 194 (253)
T PRK14261 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED-LIED 194 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999988754 4443
No 185
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=276.38 Aligned_cols=158 Identities=25% Similarity=0.387 Sum_probs=134.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g---- 659 (779)
..|+++|++++|+. .++++ |+||+|++||+++|+|++|||||||+++|.|+.+| ++| +|.++|
T Consensus 15 ~~l~~~~l~~~~~~------~~vl~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG-~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYYGG------YQALK-NINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG-EIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEECC------eeeee-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCccc-EEEEcCcccc
Confidence 46999999999964 36899 99999999999999999999999999999999874 689 888754
Q ss_pred -------------eEEEEccccccCCCcHHHHhccCCC--------CCHHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 -------------KKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 -------------~iayV~Q~pwI~ngTIreNIlfG~~--------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|++.++.+|++|||.++.. ..+++..++++.+++.+++. +..+...
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~ 159 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLA 159 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCc
Confidence 3799999999999999999987631 11356677777777765443 3445667
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.+||||||||++||||++++|+++||||||++||+++.+.+.+
T Consensus 160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 202 (265)
T PRK14252 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202 (265)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999887655
No 186
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.6e-30 Score=272.51 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=130.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|++ .++++ ++||+|++|++++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 3 i~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 3 LYLEGLSVSFDG------FKALN-DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG-SVLFGGTDLTGLPEHQI 74 (242)
T ss_pred EEEEeeEEEcCC------eEEee-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCeecCCCCHHHH
Confidence 789999999964 36899 99999999999999999999999999999999999999 999877
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCCCC---------------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGKDM---------------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~~~---------------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++.+ |++||+.++... ++++.+++++..++.+ .......+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~ 143 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGL 143 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhh
Confidence 28999999999986 999999875321 1223444555444433 23455678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||||||||++||||++++|+++|||||||+||+++.+.+.+ .+..
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~ 188 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKS 188 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999987765 3443
No 187
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=2.8e-30 Score=272.13 Aligned_cols=158 Identities=24% Similarity=0.405 Sum_probs=137.4
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~ 667 (779)
.++++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|.|+.+|.+| +|.++| .++|++|+
T Consensus 4 ~l~~~~l~~~~~~------~~vl~-~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~~~~~i~~v~q~ 75 (251)
T PRK09544 4 LVSLENVSVSFGQ------RRVLS-DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNGKLRIGYVPQK 75 (251)
T ss_pred EEEEeceEEEECC------ceEEE-eEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCccCEEEeccc
Confidence 4889999999964 46899 99999999999999999999999999999999999999 999987 59999999
Q ss_pred cccCC---CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 668 SWIQT---GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 668 pwI~n---gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
+.++. .|+++|+.+....++++.+++++.++|.+.++. ....||||||||++||||++++|+++||
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 76 LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred cccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98765 489999877554556778889999998765543 3468999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhHH
Q 004004 745 DDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 745 DDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++||+.+.+.+++ .+...
T Consensus 145 DEPt~~LD~~~~~~l~~-~L~~~ 166 (251)
T PRK09544 145 DEPTQGVDVNGQVALYD-LIDQL 166 (251)
T ss_pred eCCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999887764 34443
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-30 Score=276.98 Aligned_cols=161 Identities=23% Similarity=0.362 Sum_probs=134.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ....++++ ++||+|++||.++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~-~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEK---ESDVNQLN-GVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG-KVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCC---CCcCeeee-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-EEEECCEECCcCCHHH
Confidence 4889999999974 22245899 99999999999999999999999999999999999999 999887
Q ss_pred ---eEEEEcccc--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~p--wI~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++|++|+| .+++.|+.|||.++.. .++ ++++++++.++|.+..+. ....|||||||
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~q 147 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQ 147 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHH
Confidence 279999998 4788999999987532 222 345677787777654333 34689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++||||+.++|+++||||||++||+.+.+.+.+ .+..+
T Consensus 148 rv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l 186 (277)
T PRK13642 148 RVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR-VIHEI 186 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999988765 44443
No 189
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-30 Score=258.52 Aligned_cols=128 Identities=31% Similarity=0.543 Sum_probs=115.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. .++++ ++||++++||.++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYGK------KTALD-DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEECC------eeeee-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhh
Confidence 468999999964 36899 99999999999999999999999999999999999999 998876
Q ss_pred -eEEEEccccccCCC-cHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 660 -KKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 660 -~iayV~Q~pwI~ng-TIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
.++|++|++.++.+ |++||+. ||||||||++||||+++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHc
Confidence 37999999999886 9999984 99999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 738 NSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 738 ~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+|+++||||||++||+++.+.+.+. +...
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~-l~~~ 141 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWEL-LREL 141 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHH-HHHH
Confidence 9999999999999999999887653 4443
No 190
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=1.7e-30 Score=274.10 Aligned_cols=159 Identities=27% Similarity=0.331 Sum_probs=131.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+. .++++ |+||+|++||+++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLD-GLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG-QIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeCC------eeEEe-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccc
Confidence 478999999964 46899 99999999999999999999999999999999999999 898765
Q ss_pred ---------------eEEEEccccccCC-CcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCcccc
Q 004004 660 ---------------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (779)
Q Consensus 660 ---------------~iayV~Q~pwI~n-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 715 (779)
.++|++|++.++. .|++||+.++.. .+ +++.++.++..++.+.++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------- 141 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD----------- 141 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------
Confidence 3899999999884 899999987521 12 234556666666654443
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
.....||||||||++||||+.++|+++||||||++||+.+...+++ .+....+
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~ 194 (252)
T TIGR03005 142 HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIRRLAS 194 (252)
T ss_pred cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHH
Confidence 3457899999999999999999999999999999999999887664 4544433
No 191
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=276.17 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=133.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g---- 659 (779)
..++++|+++.|++ .++++ |+||+|++||+++|+|++|||||||+++|.|..+| ++| +|.++|
T Consensus 11 ~~l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWYGE------KQALK-NVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG-KVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEeCC------eeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcce-EEEECCEEcc
Confidence 35899999999964 46899 99999999999999999999999999999999875 799 898865
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.+++.|++||+.|+.. .+. ++.+++++.+++.+++. ........+|
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 155 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSL 155 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhC
Confidence 2799999999999999999987532 222 23455666666643321 2234566789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||++++|+++||||||++||+.+...+.+ .+..
T Consensus 156 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~ 199 (258)
T PRK14268 156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMN 199 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999988654 3443
No 192
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-30 Score=272.62 Aligned_cols=152 Identities=25% Similarity=0.407 Sum_probs=130.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||++++|++++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 3 l~~~~l~~~~~~------~~il~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 3 LRTENLTVGYGT------KRILN-DLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEeEEEEECC------EEEEe-eeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEhHHCCHHHH
Confidence 789999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred --eEEEEccccccCCC-cHHHHhccCCC-----C------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 --KKAYVPQSSWIQTG-TIRENILFGKD-----M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 --~iayV~Q~pwI~ng-TIreNIlfG~~-----~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|++.++.+ |++||+.++.. + ++++.+++++.+++.+..+ .....|||||
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 143 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQ 143 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHH
Confidence 28999999998876 99999988631 1 1335566677777755443 3457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||++||||+.++|+++||||||++||+++.+.+.+
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999887664
No 193
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=273.27 Aligned_cols=162 Identities=27% Similarity=0.379 Sum_probs=133.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|+++.|++ .++++ ++||+|++||.++|+||+|||||||+++|.|..+| .+| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALK-SINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITG-KLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEECC------eeeee-cceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEEccc
Confidence 4789999999964 46899 99999999999999999999999999999999986 589 898876
Q ss_pred ---------eEEEEccccccCCCcHHHHhccCCCC----CH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ---------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ---------~iayV~Q~pwI~ngTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.++..|++|||.++... ++ ++..++++..++.+++. +.......+||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS 147 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLS 147 (249)
T ss_pred ccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCC
Confidence 27999999999999999999876321 11 23345566666655443 23455678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||++||||++++|+++||||||++||+++.+.+.+ .+...
T Consensus 148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 191 (249)
T PRK14253 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE-LMEEL 191 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999998877655 45443
No 194
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.7e-30 Score=263.54 Aligned_cols=151 Identities=19% Similarity=0.283 Sum_probs=129.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------E
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------K 661 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------i 661 (779)
++++|++++|+. ..+. ++||+|++||+++|+|++|||||||+++|+|+.+|++| +|.++|. +
T Consensus 2 l~~~~l~~~~~~-------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIEQ-------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG-NIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEECC-------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCcccChhhhhhE
Confidence 678999999953 2466 79999999999999999999999999999999999999 9999882 7
Q ss_pred EEEcccccc-CCCcHHHHhccCCCC--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 004004 662 AYVPQSSWI-QTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 662 ayV~Q~pwI-~ngTIreNIlfG~~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ 738 (779)
+|++|++.+ ++.|++|||.++... ++++.+++++.+++.+..+ .++.+||||||||++||||++++
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~ 141 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQ 141 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcC
Confidence 899998754 789999999876432 3456777788888765433 35678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHH
Q 004004 739 SDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 739 adI~LLDDp~SALDa~t~~~If~ 761 (779)
|+++||||||++||+.+.+.+.+
T Consensus 142 p~~lllDEP~~~LD~~~~~~l~~ 164 (195)
T PRK13541 142 SDLWLLDEVETNLSKENRDLLNN 164 (195)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH
Confidence 99999999999999999776654
No 195
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-30 Score=277.54 Aligned_cols=160 Identities=23% Similarity=0.399 Sum_probs=129.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+... ....++++ |+||+|++|++++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 2 ~l~~~~l~~~~~~~~-~~~~~~l~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGT-PFEGRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG-SVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCC-ccccceee-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccccccc
Confidence 378999999996410 00146899 99999999999999999999999999999999999999 998876
Q ss_pred -------eEEEEcccc--ccCCCcHHHHhccCCC---CCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 -------~iayV~Q~p--wI~ngTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++|++|+| .+++.|++|||.|+.. .+.+ +.+++++..+|.++. ...+..+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSg 148 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSG 148 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCH
Confidence 279999998 6889999999987532 2222 234455555554321 2345678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|||||++||||++++|+++||||||++||+++.+.+.+.
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 999999999999999999999999999999998876653
No 196
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=277.55 Aligned_cols=157 Identities=23% Similarity=0.324 Sum_probs=131.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|+. .++++ |+||+|++||+++|+|++|||||||+++|.|+++| .+| +|.++|
T Consensus 21 ~l~i~nl~~~~~~------~~il~-~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~ 92 (276)
T PRK14271 21 AMAAVNLTLGFAG------KTVLD-QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG-DVLLGGRSIFN 92 (276)
T ss_pred EEEEeeEEEEECC------EEEee-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCce-EEEECCEEccc
Confidence 5899999999964 46899 99999999999999999999999999999999986 699 998876
Q ss_pred ---------eEEEEccccccCCCcHHHHhccCCC----CCHHHH----HHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ---------KKAYVPQSSWIQTGTIRENILFGKD----MRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ---------~iayV~Q~pwI~ngTIreNIlfG~~----~d~~~y----~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|+|.+|+.|++|||.++.. .+++.+ .+.++.+++.+.+ .+.......+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS 165 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLS 165 (276)
T ss_pred cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCC
Confidence 3799999999999999999987632 233332 3445555554322 233456678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||++||||++++|+++||||||++||+.+.+.+++
T Consensus 166 gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~ 204 (276)
T PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE 204 (276)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 197
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=274.92 Aligned_cols=157 Identities=25% Similarity=0.366 Sum_probs=129.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|+. .++++ |+||+|++||.++|+||+|||||||+++|.|+++| .+| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYYGS------NHVIK-GVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG-EVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEeCC------eeeee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccc
Confidence 4889999999964 46899 99999999999999999999999999999999987 489 998865
Q ss_pred ----------eEEEEccccccCCC-cHHHHhccCCCC-----CH----HHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 ----------KKAYVPQSSWIQTG-TIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ng-TIreNIlfG~~~-----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++|++|++.++.+ |++||+.++... +. ++.+++++..++.++++ ........
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPS 148 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChh
Confidence 37999999999875 999999875311 11 23445555555544332 12345678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||||||++||||++++|+++||||||++||+.+.+.+.+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 190 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887765
No 198
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=2.3e-30 Score=267.59 Aligned_cols=162 Identities=28% Similarity=0.423 Sum_probs=135.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|++. +...+.++ ++||++++|+.++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~~--~~~~~il~-~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHG--SLRKQVLF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCC--CcceeEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEhHhcCHhHH
Confidence 6899999999641 11246899 99999999999999999999999999999999999999 998876
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|+|.++. .|+.||+.++.. .+ +++++++++.++|.++++..| .+|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~ 146 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQ 146 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHH
Confidence 2899999999887 799999987532 22 235677778888876666544 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|||++||||++++|+++||||||++||+.+.+.+.+. +....
T Consensus 147 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~-l~~~~ 188 (220)
T TIGR02982 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL-MQKLA 188 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999998876653 44433
No 199
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-30 Score=275.89 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=137.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
-++++|++++|+........++++ ++||+|++||.++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALD-DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG-KVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeccccccHH
Confidence 488999999997411001246999 99999999999999999999999999999999999999 998876
Q ss_pred ----eEEEEccccc--cCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~pw--I~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++||+|+|. +++.|+.||+.|+.. .+ +++.+++++.++|.+.++..| .+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~ 150 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQK 150 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHH
Confidence 2799999984 677799999998632 22 345778888888877665544 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||++||||+.++|+++|||||||+||+.+.+.+.+ ++..+
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l 190 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN-TIKEL 190 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999998764 45444
No 200
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=273.90 Aligned_cols=161 Identities=32% Similarity=0.419 Sum_probs=132.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.|+++|+++.|++ .++++ ++||+|++||+++|+|++|||||||+++|.|.+++ .+| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVK-NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG-KIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEeCC------ceeEe-eeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEccc
Confidence 4789999999964 46899 99999999999999999999999999999999874 789 998876
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|+|.++..|++||+.++.. ..+ ++.+++++..++.++++ +....+..+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 147 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRL 147 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhc
Confidence 3899999999999999999987531 111 23344555566654442 2345677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .+..
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~ 191 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK-LLEE 191 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999987644 4443
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=276.29 Aligned_cols=163 Identities=23% Similarity=0.373 Sum_probs=132.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g---- 659 (779)
..++++|+++.|++ .++++ |+||+|++||+++|+|++|||||||+++|.|..+ |++| +|.++|
T Consensus 23 ~~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~ 94 (271)
T PRK14238 23 VVFDTQNLNLWYGE------DHALK-NINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG-KILYRDQNIF 94 (271)
T ss_pred eEEEEeeeEEEECC------cceee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-eEEECCEEcc
Confidence 35999999999964 46899 9999999999999999999999999999999987 6899 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---C-CH----HHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M-RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~-d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|+|.++..|++|||.++.. . ++ ++..++++..++.+++. ......+.+
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~ 167 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYG 167 (271)
T ss_pred cccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCccc
Confidence 3899999999999999999987532 1 11 12234444444433332 334567889
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 213 (271)
T PRK14238 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQEL 213 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999988765 44433
No 202
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=273.81 Aligned_cols=159 Identities=25% Similarity=0.364 Sum_probs=136.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g---- 659 (779)
..+.+++.++.|.+ .++++ ++||++++||+++|+|++|||||||+++|.|+++| .+| +|.++|
T Consensus 7 ~~~~~~~~~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~ 78 (261)
T PRK14263 7 IVMDCKLDKIFYGN------FMAVR-DSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEG-HVHFLGQDVY 78 (261)
T ss_pred ceEEEEeEEEEeCC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCce-EEEECCEecc
Confidence 45788999998864 46899 99999999999999999999999999999999986 689 998876
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCCC------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++++++.|++|||.++..+ .+++.+++++..+|.+++.. ..++...+||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS 151 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLS 151 (261)
T ss_pred ccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCC
Confidence 27999999999999999999987431 23467778888888766543 2346778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||||||++||||++++|+++||||||++||+.+...+++-
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~ 191 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL 191 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887664
No 203
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-30 Score=274.78 Aligned_cols=160 Identities=24% Similarity=0.314 Sum_probs=133.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ . ..++++ |+||+|++||+++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 7 ~l~i~~l~~~~~~---~-~~~~l~-~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---D-ASFTLK-DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---C-CCccee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHH
Confidence 5899999999964 1 245899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEccccc--cCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~pw--I~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++|++|+|+ +++.|+++|+.|+.. .+. ++.+++++..++.++.+ .+..+|||||||
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~q 149 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQ 149 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHH
Confidence 2799999995 567789999988632 222 24455666666654332 345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++||||++++|+++||||||++||+.+.+.+++ +++..
T Consensus 150 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 188 (269)
T PRK13648 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLD-LVRKV 188 (269)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999988765 45444
No 204
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=274.26 Aligned_cols=161 Identities=23% Similarity=0.350 Sum_probs=130.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG------ 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g------ 659 (779)
-+++|+++.|++ .++++ |+||+|++||+++|+|++|||||||+++|.|..+ |.+| +|.++|
T Consensus 6 ~~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~ 77 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILF-DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG-ELDIDGIDVYSV 77 (251)
T ss_pred EEeeeEEEEECC------eeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcce-EEEECCEehHhc
Confidence 468999999964 46899 9999999999999999999999999999999986 4699 998876
Q ss_pred ---------eEEEEccccccCCCcHHHHhccCCC-----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ---------~iayV~Q~pwI~ngTIreNIlfG~~-----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.++.+|++|||.++.. .+ +++.+++++..+|.+++. +..+..+.+|
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 150 (251)
T PRK14244 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFEL 150 (251)
T ss_pred ccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhC
Confidence 3799999999999999999987621 11 123345566666654332 2334567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 195 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQEL 195 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999998877654 45443
No 205
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=273.99 Aligned_cols=157 Identities=26% Similarity=0.416 Sum_probs=133.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ ++||+|++||.++|+|++|||||||+++|.|++++ ++| +|.++|
T Consensus 7 ~l~~~~l~~~~~~------~~il~-~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G-~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYYNT------SKAIE-GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG-VVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEECC------eEeec-ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccce-EEEECCEeccc
Confidence 5899999999964 45899 99999999999999999999999999999999885 489 898875
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++||+|++.+++.|++|||.++.. ++ +++.+++++.+++.++++. .....+..|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 151 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGL 151 (259)
T ss_pred cccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccC
Confidence 3899999999999999999987521 22 2345677777777655432 234567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||||++||||+.++|+++||||||++||+.+.+.+.+
T Consensus 152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 191 (259)
T PRK14260 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEE 191 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999887765
No 206
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.2e-30 Score=263.15 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=126.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc---CCCCCeEEEcC-------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~---~~~G~~I~i~g------- 659 (779)
.+.++|++|.|+.. ..+.++++ ++||+|++||+++|+||+|||||||+++|.|.++ |.+| +|.++|
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~il~-~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G-~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG--RSKIPILK-DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC--CCCceeee-eEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce-EEEECCEECccch
Confidence 36899999999862 13457899 9999999999999999999999999999999999 8999 998877
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++|++|++.++. .|++|||.++.... ..+....||||||||++|||
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAE 131 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHH
Confidence 3899999998876 59999998753211 22345689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
|++++|+++||||||++||+++.+.+.+ ++....+
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~ 166 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILK-CIRTMAD 166 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999988765 4554443
No 207
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=2.2e-30 Score=261.61 Aligned_cols=140 Identities=26% Similarity=0.401 Sum_probs=119.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------------eEEEEcccc--ccC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------KKAYVPQSS--WIQ 671 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------------~iayV~Q~p--wI~ 671 (779)
.++++ ++||+|++||.++|+||+|||||||+++|+|.++|++| +|.++| .++|++|+| .++
T Consensus 5 ~~il~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLK-GLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG-AVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceec-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-eEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 46899 99999999999999999999999999999999999999 998876 279999998 578
Q ss_pred CCcHHHHhccCC---CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 672 TGTIRENILFGK---DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 672 ngTIreNIlfG~---~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
+.|++|||.++. ..++ ++.+++++..+|.+..+. +..+||||||||++||||++++|+++||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999998752 1222 345667777777654433 3368999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHH
Q 004004 745 DDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 745 DDp~SALDa~t~~~If~ 761 (779)
||||++||+.+.+.+.+
T Consensus 152 DEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLA 168 (190)
T ss_pred cCCcccCCHHHHHHHHH
Confidence 99999999999988765
No 208
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=3.4e-30 Score=272.65 Aligned_cols=160 Identities=25% Similarity=0.355 Sum_probs=132.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
+.++++|+++.|++ .++++ |+||+|++||+++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLK-GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-SIVVNGQTINLVRDK 75 (257)
T ss_pred ccEEEeeeEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEccccccc
Confidence 46899999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred -----------------eEEEEccccccCC-CcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCcc
Q 004004 660 -----------------KKAYVPQSSWIQT-GTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 660 -----------------~iayV~Q~pwI~n-gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
.++|++|++.++. .|++||+.++. ..+ +++..++++..++.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------- 146 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ--------- 146 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh---------
Confidence 2799999999987 59999998742 122 234445555555543321
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
......||||||||++||||+.++|+++||||||++||+.+.+.+.+ .+..+
T Consensus 147 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l 198 (257)
T PRK10619 147 -GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQL 198 (257)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 34567899999999999999999999999999999999999998775 44443
No 209
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.8e-30 Score=269.99 Aligned_cols=158 Identities=27% Similarity=0.463 Sum_probs=128.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|+. .++++ |+||++++||.++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILR-GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeCC------eEEec-ceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHH
Confidence 468999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCCCC-C---HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGKDM-R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~~~-d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|++.++.. |++||+.++... . ++.++++++..++ ..........+||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~l 142 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAI 142 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHH
Confidence 38999999999886 999999876422 1 2233444444331 1122345567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~ 177 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGR-VIRRL 177 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988765 34433
No 210
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.2e-30 Score=272.45 Aligned_cols=155 Identities=19% Similarity=0.277 Sum_probs=132.5
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------- 660 (779)
...++++|++++|++ .++++ ++||++++|++++|+||+|||||||+++|.|+++|.+| +|.++|.
T Consensus 5 ~~~l~i~~l~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~ 76 (265)
T PRK10253 5 VARLRGEQLTLGYGK------YTVAE-NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG-HVWLDGEHIQHYAS 76 (265)
T ss_pred ccEEEEEEEEEEECC------EEEee-ecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEhhhCCH
Confidence 356999999999964 46899 99999999999999999999999999999999999999 9998872
Q ss_pred ------EEEEccccccC-CCcHHHHhccCC-CC----------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 661 ------KAYVPQSSWIQ-TGTIRENILFGK-DM----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 661 ------iayV~Q~pwI~-ngTIreNIlfG~-~~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
++||+|++.++ +.|++||+.++. +. ++++.+++++..+|.+... ....+||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS 145 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLS 145 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCC
Confidence 89999999876 579999998752 11 1235566777777765433 3457899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||++||||++++|+++||||||++||+.+.+++.+
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 184 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE 184 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 211
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.9e-30 Score=269.01 Aligned_cols=152 Identities=28% Similarity=0.362 Sum_probs=132.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+. .++++ ++||+|++|++++|+|++|||||||+++|+|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~il~-~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYGG------FVALD-GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG-EILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeCC------eeeec-cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhc
Confidence 468999999964 36899 99999999999999999999999999999999999999 999876
Q ss_pred eEEEEccccccCCC-cHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++||+|++-++.+ |++||+.++.. .+ +++++++++..++.+.++..| .+||||||||++|
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~l 141 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAI 141 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 38999999999865 99999987532 12 346677778778876665544 5999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||++++|+++||||||++||+.+.+.+.+
T Consensus 142 aral~~~p~llllDEP~~gLD~~~~~~l~~ 171 (232)
T cd03300 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQL 171 (232)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999999999999999999999999987654
No 212
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-30 Score=287.53 Aligned_cols=154 Identities=29% Similarity=0.396 Sum_probs=128.1
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------------eEEEEccccccCC
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-----------------~iayV~Q~pwI~n 672 (779)
+.++ |+||+|++||+++|+||+|||||||+++|.|+++|++| +|.++| .++||+|++.+|.
T Consensus 42 ~~L~-~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVK-DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEE-eEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC-EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 4689 99999999999999999999999999999999999999 999876 3899999999986
Q ss_pred -CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 673 -GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 673 -gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
.|++|||.|+.. ++ +++..++++.++|.+..+..| .+||||||||++||||+..+|+++||
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998632 22 245667788888876655544 48999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 745 DDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 745 DDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||||+||+.+.+.+.+. +..+.++ -++.++|
T Consensus 189 DEPts~LD~~~r~~l~~~-L~~l~~~~g~TIIivTH 223 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDE-LVKLQAKHQRTIVFISH 223 (400)
T ss_pred ECCCccCCHHHHHHHHHH-HHHHHHHCCCeEEEEEC
Confidence 999999999999887664 3333222 3455555
No 213
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.5e-30 Score=275.96 Aligned_cols=164 Identities=23% Similarity=0.366 Sum_probs=132.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.|+++|++++|++.. ....++++ |+||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~-~~~~~~l~-~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGT-PMEKKGLD-NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG-TITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCC-Ccccccee-eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccc
Confidence 378999999997410 00246899 99999999999999999999999999999999999999 9998772
Q ss_pred --------EEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 661 --------KAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 661 --------iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
++|++|+| .+++.|++|||.|+.. .+ +++.+++++.++|..++. .....+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSg 148 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI----------SKSPFELSG 148 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh----------hCCcccCCH
Confidence 79999998 5788999999987532 22 234566677777753221 234568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||++||||+..+|+++||||||++||+.+.+.+.+ .+...
T Consensus 149 Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l 191 (287)
T PRK13641 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDY 191 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999877654 45443
No 214
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=5.5e-30 Score=262.34 Aligned_cols=152 Identities=27% Similarity=0.359 Sum_probs=130.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|+++.|+. ..+++ ++||+|++||+++|+|++|||||||+++|.|..++++| +|.++|.
T Consensus 3 l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 3 LEGEDLACVRGG------RVLFS-GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG-TIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEeEEEEECC------eEEEe-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeCcchhhHhh
Confidence 789999999964 35799 99999999999999999999999999999999999999 9999873
Q ss_pred EEEEcccccc-CCCcHHHHhccCCC---CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 661 KAYVPQSSWI-QTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 661 iayV~Q~pwI-~ngTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
++|++|++.+ .+.|++||+.+... .++++.+++++..+|.++.+. + ..+||||||||++||||+.
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~----------~~~LS~G~~qrl~la~al~ 143 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-P----------FGYLSAGQKRRVALARLLV 143 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-C----------hhhcCHHHHHHHHHHHHHh
Confidence 6999988766 47899999976432 335567888888888654332 2 2479999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++|+++||||||++||+.+.+.+.+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~ 168 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAE 168 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH
Confidence 9999999999999999999988754
No 215
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=6.8e-30 Score=263.04 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=130.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|++++|++ .+.++ ++||++++||.++|+|++|||||||+++|.|+++|.+| +|.++|.
T Consensus 10 ~~l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFG-PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG-QIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeee-cceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe-eEEECCEEccchhhh
Confidence 35899999999964 45899 99999999999999999999999999999999999999 9999873
Q ss_pred --EEEEccccccCCC-cHHHHhccCCCC----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 661 --KAYVPQSSWIQTG-TIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 661 --iayV~Q~pwI~ng-TIreNIlfG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
++|++|++.++.+ |++||+.++..+ .+++.++.++..+|.+.. .....+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-----------DTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-----------cCChhhCCHHHHHHHHHHH
Confidence 8999999988876 999999764321 233444555555543322 2334689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++++|+++||||||++||+.+.+.+.+ .++..
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 183 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNR-MISAH 183 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999886654 45443
No 216
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=7.6e-30 Score=268.72 Aligned_cols=158 Identities=28% Similarity=0.361 Sum_probs=129.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLH-GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG-TIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEECC------eeeec-cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEcccccccc
Confidence 3789999999964 36899 99999999999999999999999999999999999999 998764
Q ss_pred -----------eEEEEccccccCC-CcHHHHhccCC----CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 -----------KKAYVPQSSWIQT-GTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 -----------~iayV~Q~pwI~n-gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++||+|++.++. .|++||+.++. ..+. ++.++.++..++.+. ......
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~ 143 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPR 143 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChh
Confidence 3799999999885 79999998642 1222 233444555554322 234568
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+||||||||++||||+..+|+++||||||++||+.+.+.+.+ ++...
T Consensus 144 ~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 190 (250)
T PRK11264 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQL 190 (250)
T ss_pred hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999887765 34433
No 217
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=4.4e-30 Score=272.51 Aligned_cols=159 Identities=25% Similarity=0.376 Sum_probs=131.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC---CCCeEEEcC-------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~---~G~~I~i~g------- 659 (779)
.++++|++++|+. .++++ ++||++++||+++|+||+|||||||+++|.|+++|. +| +|.++|
T Consensus 4 ~l~~~nl~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G-~i~~~g~~~~~~~ 75 (262)
T PRK09984 4 IIRVEKLAKTFNQ------HQALH-AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREG 75 (262)
T ss_pred EEEEeeEEEEeCC------eEEEe-cceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce-EEEECCEeccccc
Confidence 4889999999964 46899 999999999999999999999999999999999876 48 898776
Q ss_pred -----------eEEEEccccccCC-CcHHHHhccCCC---------------CCHHHHHHHHHHccchHHHhhccCCCCc
Q 004004 660 -----------KKAYVPQSSWIQT-GTIRENILFGKD---------------MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (779)
Q Consensus 660 -----------~iayV~Q~pwI~n-gTIreNIlfG~~---------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T 712 (779)
.++|++|++.++. .|++||+.++.. ..+++.+++++..++.+.++
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------- 147 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-------- 147 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh--------
Confidence 2799999999877 599999987631 01234566666666654433
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
....+||||||||++||||++.+|+++||||||++||.++.+.+.+ .+....
T Consensus 148 ---~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 199 (262)
T PRK09984 148 ---QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD-TLRDIN 199 (262)
T ss_pred ---CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHH-HHHHHH
Confidence 3456899999999999999999999999999999999999987755 454443
No 218
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=9.1e-30 Score=269.52 Aligned_cols=158 Identities=26% Similarity=0.405 Sum_probs=132.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|++++|+. .++++ ++||+|++|++++|+|++|||||||+++|.|+.+|.+| +|.++|.
T Consensus 3 l~~~~l~~~~~~------~~il~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G-~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 3 LEARNLSVRLGG------RTLLD-DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG-EVRLNGRPLADWSPAEL 74 (258)
T ss_pred EEEEeEEEEeCC------eeeee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcccCCHHHh
Confidence 789999999964 46899 99999999999999999999999999999999999999 9998772
Q ss_pred ---EEEEcccccc-CCCcHHHHhccCCC-C------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 661 ---KAYVPQSSWI-QTGTIRENILFGKD-M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 661 ---iayV~Q~pwI-~ngTIreNIlfG~~-~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
++|++|++.+ ++.|++||+.++.. . ++++.+++++..++.+..+. ....||||||||+
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv 143 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRV 143 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHH
Confidence 7999999987 77899999988632 1 12345667777777654432 3569999999999
Q ss_pred HHHHHHc------cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 730 QLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 730 aLARAly------~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
+||||++ .+|+++||||||++||+.+.+++.+ .+....
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~ 187 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLA 187 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999 5999999999999999999987654 454443
No 219
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5e-30 Score=270.50 Aligned_cols=163 Identities=25% Similarity=0.340 Sum_probs=133.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc--C---CCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~--~---~~G~~I~i~g---- 659 (779)
+.|+++|++++|++ .++++ |+||+|++||.++|+|++|||||||+++|.|+++ | ++| +|.++|
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~ 74 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVK-DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG-KILLDDTDIY 74 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEe-cceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCce-EEEECCEEcc
Confidence 46899999999964 46899 9999999999999999999999999999999986 3 589 898876
Q ss_pred -----------eEEEEccccccCC-CcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 -----------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 -----------~iayV~Q~pwI~n-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++|++|++.++. .|++|||.++.. .+ +++.+++++.+++.+.++. .....+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~ 147 (252)
T PRK14256 75 DRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAM 147 (252)
T ss_pred cccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcC
Confidence 2899999999888 699999986421 12 2345677777777654432 1234577
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+||||||||++||||++.+|+++|||||||+||+.+.+.+.+ .+...
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~ 194 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE-LIEEL 194 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 899999999999999999999999999999999999887765 34443
No 220
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=283.08 Aligned_cols=164 Identities=21% Similarity=0.374 Sum_probs=135.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
+++ |++++|++ . .. |+||+|++||+++|+||+|||||||+++|+|+.+|++| +|.++|
T Consensus 2 l~~-~l~k~~~~------~--~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD------L--CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKG-RIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC------E--EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccc
Confidence 455 78888854 1 23 89999999999999999999999999999999999999 998866
Q ss_pred ------eEEEEccccccCC-CcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 ------KKAYVPQSSWIQT-GTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ------~iayV~Q~pwI~n-gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++||+|++.+|. .|++|||.|+.+ .++++.+++++..+|.+.++..| .+||||||||++|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRval 139 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAI 139 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHH
Confidence 3799999999985 699999999743 34567788888888876655443 5899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||+.++|+++|||||||+||+++.+.+.+. +..+.++ -++.|+|
T Consensus 140 araL~~~p~llLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tii~vTH 187 (352)
T PRK11144 140 GRALLTAPELLLMDEPLASLDLPRKRELLPY-LERLAREINIPILYVSH 187 (352)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEec
Confidence 9999999999999999999999999887654 5444443 2444555
No 221
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=6.1e-30 Score=277.05 Aligned_cols=154 Identities=31% Similarity=0.473 Sum_probs=128.5
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|+|.++|++| +|.++|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~-~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVN-DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG-KITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEc-ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcccHHH
Confidence 45899999999964 45899 99999999999999999999999999999999999999 999876
Q ss_pred ---eEEEEccccccC-CCcHHHHhcc-CC--CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQ-TGTIRENILF-GK--DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~-ngTIreNIlf-G~--~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++|++|++.++ +.|++||+.+ +. ..++ ++.+++++.++|.+.. ++ ...+||||||||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-------~~----~~~~LSgG~~qr 143 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DV----RVALLSGGMKRR 143 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-------cC----chhhCCHHHHHH
Confidence 389999999987 4799999974 22 1222 2344556666554332 22 235799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++||||+..+|+++||||||++||+.+.+.+.+
T Consensus 144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 176 (303)
T TIGR01288 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWE 176 (303)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 999999999999999999999999999988765
No 222
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=6e-30 Score=264.96 Aligned_cols=157 Identities=25% Similarity=0.300 Sum_probs=133.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------eE
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------KK 661 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------~i 661 (779)
++++|++++|+. .++++ ++||++++||.++|+|++|||||||+++|+|+++|.+| +|.++| .+
T Consensus 1 l~l~~v~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVN-NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG-EIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEECC------EEEEe-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEeccccccccE
Confidence 468999999964 46899 99999999999999999999999999999999999999 999887 37
Q ss_pred EEEccccccCC-CcHHHHhccCC---CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 662 AYVPQSSWIQT-GTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 662 ayV~Q~pwI~n-gTIreNIlfG~---~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
+|++|++-++. .|++||+.++. ..++++.+++++..++++..+. ...+||||||||++||||+++
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhc
Confidence 99999998776 69999997642 2356677888888888754432 346899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 738 NSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 738 ~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+|+++||||||++||+.+.+.+.+ ++...
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~-~L~~~ 170 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRE-LIRSF 170 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999987654 44443
No 223
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.6e-30 Score=256.70 Aligned_cols=130 Identities=36% Similarity=0.468 Sum_probs=117.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++++|+. .++++ ++||++++||.++|+||+|||||||+++|+|+++|++| +|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~-~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLN-DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG-SILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEECC------eEEEe-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccchhHH
Confidence 468999999964 46899 99999999999999999999999999999999999999 998866
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++|++|+|.++. .|++||+.+. ||||||||++||||
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~a 114 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARA 114 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHH
Confidence 3789999999885 5999999875 99999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+.++|+++||||||++||+.+...+++ .+...
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~ 146 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRA-LLKSL 146 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999987765 34433
No 224
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=8.3e-30 Score=270.90 Aligned_cols=166 Identities=23% Similarity=0.304 Sum_probs=129.9
Q ss_pred EEEeeeEEEeccccc---cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 591 IDIEAGEYAWDAREE---NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~---~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
++++|++++|+.... ..+.++++ |+||+|++||+++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLT-NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG-TVSFRGQDLYQLDR 80 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEee-CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEccccCH
Confidence 789999999963100 01246899 99999999999999999999999999999999999999 998876
Q ss_pred --------eEEEEccccc--c-CCCcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 --------KKAYVPQSSW--I-QTGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 --------~iayV~Q~pw--I-~ngTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|+|. + .+.|++|||.++. .++ +++..++++..++.+++ ...++.+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~ 150 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQ 150 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhh
Confidence 3899999983 3 3589999996532 122 23445556666554221 2345678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
||||||||++||||++++|+++||||||++||+.+.+.+.+ .+..+.+
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~ 198 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE-LLRKLQQ 198 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999876654 4544443
No 225
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.7e-30 Score=266.86 Aligned_cols=157 Identities=22% Similarity=0.408 Sum_probs=129.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||++++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVE-DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG-NIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeCC------EEEEe-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHH
Confidence 3789999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC----CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|++.++. .|++||+.++.. .++ ++.++.++..++. .........||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~ 143 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGER 143 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHH
Confidence 3899999998887 599999987532 122 2334444444432 334456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
||++||||++++|+++||||||++||+.+.+.+.+ .+..
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~ 182 (241)
T PRK10895 144 RRVEIARALAANPKFILLDEPFAGVDPISVIDIKR-IIEH 182 (241)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999887754 3443
No 226
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=6.7e-30 Score=267.17 Aligned_cols=156 Identities=34% Similarity=0.435 Sum_probs=131.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ +++++ |+||++.+||.++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 1 i~i~~l~~~~~~------~~il~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFGS------FQALD-DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG-RIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEECC------eeeee-eEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhc
Confidence 468999999964 36899 99999999999999999999999999999999999999 998876
Q ss_pred eEEEEccccccCCC-cHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++||||+|.++.+ |++||+.++.+ .+ +++.+++++..++.+..+. ...+||||||||++|
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~l 141 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVAL 141 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHH
Confidence 38999999999975 99999988643 22 2344556666666544432 346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||+.++|+++||||||++||+++.+.+.+ .+..
T Consensus 142 aral~~~p~llllDEP~~~LD~~~~~~~~~-~l~~ 175 (237)
T TIGR00968 142 ARALAVEPQVLLLDEPFGALDAKVRKELRS-WLRK 175 (237)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHH
Confidence 999999999999999999999999988765 3443
No 227
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9e-30 Score=272.32 Aligned_cols=154 Identities=24% Similarity=0.376 Sum_probs=132.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. ..++++ ++||+|++||.++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 3 ~l~~~~l~~~~~~-----~~~~l~-~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG-----SKEALN-NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC-----CCceee-EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHH
Confidence 3789999999963 135899 99999999999999999999999999999999999999 999877
Q ss_pred ---eEEEEcccc--ccCCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 ---KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 ---~iayV~Q~p--wI~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|+| .+++.|++||+.++.. .++ ++++++++.++|.+.+...| ..|||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~q 144 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKK 144 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHH
Confidence 289999998 4778999999987532 333 34677788888876555433 589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|++||||++.+|+++||||||++||+.+.+.+.+
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~ 178 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 228
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.6e-30 Score=270.76 Aligned_cols=157 Identities=25% Similarity=0.356 Sum_probs=128.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc--C---CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~--~---~~G~~I~i~g----- 659 (779)
-++++|++++|+. .++++ ++||+|++||+++|+|++|||||||+++|.|..+ | ++| +|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFYGK------FEALK-GIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITG-NVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEECC------eeEEe-cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-EEEEcCEEccc
Confidence 4899999999964 46899 9999999999999999999999999999999864 4 589 898866
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++|++|++.++..|++||+.++.. .+ +++..+.++.+++.+.+. ........+|
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~L 149 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSL 149 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccC
Confidence 3899999999999999999987521 11 123444555555543321 2344567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||||++||||++++|+++||||||++||+++.+.+.+
T Consensus 150 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14255 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999988754
No 229
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.1e-30 Score=271.83 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=130.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQD------EPVLK-GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG-AVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcCC------ccccc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc-EEEECCEEcccccCCHH
Confidence 678999999964 46899 99999999999999999999999999999999999999 998876
Q ss_pred ----eEEEEccccc--cCCCcHHHHhccCC---CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSSW--IQTGTIRENILFGK---DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~pw--I~ngTIreNIlfG~---~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++||+|+|. ++..|+.||+.++. ..++ ++.+++++..++.+..+ ....+||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~ 142 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQK 142 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHH
Confidence 2799999985 67789999998742 1222 23456667677654332 23568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||++||||+..+|+++||||||++||+.+.+.+.+ .+...
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 182 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA-IIRRI 182 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999888765 44443
No 230
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.3e-30 Score=273.22 Aligned_cols=158 Identities=25% Similarity=0.411 Sum_probs=131.7
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. ..++++ |+||+|++||.++|+||+|||||||+++|.|.+++.+| +|.++|
T Consensus 2 l~~~~l~~~~~~-----~~~~l~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD-----GTEALK-GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC-----CCeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHH
Confidence 679999999963 246899 99999999999999999999999999999999999999 998877
Q ss_pred ----eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 ----~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++|+| .+++.|++|||.++.. .+ +++..++++.++|.+..+ ....+||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~ 143 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQK 143 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHH
Confidence 279999998 6788999999987632 12 234566777777753322 22458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||++||||+..+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l 183 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK-LLYDL 183 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988765 34443
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9e-30 Score=271.87 Aligned_cols=158 Identities=26% Similarity=0.351 Sum_probs=132.5
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g---- 659 (779)
..++++|+++.|+. .++++ ++||+|++||+++|+|++|||||||+++|.|..++ .+| +|.++|
T Consensus 19 ~~l~~~nl~~~~~~------~~~l~-~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFYGG------FLALV-DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG-RLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEeCC------eEEEe-eeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCc-eEEECCEecc
Confidence 46999999999964 36899 99999999999999999999999999999999863 589 888765
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---C---CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.+++.|++|||.++.. + .++..+++++.+++.+.+.. ........||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS 163 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALS 163 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCC
Confidence 3799999999999999999988632 1 12344566777777554431 2345678899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||++||||++++|+++||||||++||+++.+.+.+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~ 202 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999987765
No 232
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=1e-29 Score=268.86 Aligned_cols=157 Identities=22% Similarity=0.348 Sum_probs=130.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|+. .++++ ++||++++||.++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVD-GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG-TVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEECC------EEEEe-eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEEcccCCHHHH
Confidence 678999999964 46899 99999999999999999999999999999999999999 999987
Q ss_pred --eEEEEccccc-cCCCcHHHHhccCCC---------C--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 --KKAYVPQSSW-IQTGTIRENILFGKD---------M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 --~iayV~Q~pw-I~ngTIreNIlfG~~---------~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|++. .+..|++||+.++.. . ++++.+++++.+++.+..+ .....|||||
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 142 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGE 142 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHH
Confidence 2899999985 567899999987631 1 1234566666666654332 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++||||++.+|+++||||||++||+++..++.+ +++..
T Consensus 143 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 183 (256)
T TIGR03873 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLA-LVREL 183 (256)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999887654 34433
No 233
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=271.01 Aligned_cols=159 Identities=28% Similarity=0.442 Sum_probs=132.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ +.++++ |+||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 6 ~l~~~~l~~~~~~-----~~~il~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN-----GHTALR-DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG-KISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC-----CcEEEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEhHHhhccc
Confidence 5899999999963 246899 99999999999999999999999999999999999999 999887
Q ss_pred eEEEEcccccc---CCCcHHHHhccCCC-----------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 KKAYVPQSSWI---QTGTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 ~iayV~Q~pwI---~ngTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|+|.+ +..+++||+.++.. .++++.+++++..+|.+..+ + ...+|||||
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~----~~~~LSgG~ 147 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------R----QIGELSGGQ 147 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------C----CcccCCHHH
Confidence 38999999865 46689999976421 12345566777777765443 2 335799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++||||++++|+++||||||++||+.+.+.+.+ .+...
T Consensus 148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~ 188 (272)
T PRK15056 148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS-LLREL 188 (272)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988764 34443
No 234
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=9e-30 Score=266.87 Aligned_cols=159 Identities=21% Similarity=0.231 Sum_probs=126.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEcCe--------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHGK-------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~g~-------- 660 (779)
++++|++++|++ .++++ |+||+|++||+++|+||+|||||||+++|.|.. +|++| +|.++|.
T Consensus 1 l~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILK-GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG-TILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEECC------EEEEe-ccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc-eEEECCEecCCCCHH
Confidence 468999999964 46899 999999999999999999999999999999994 78999 9998772
Q ss_pred ------EEEEccccccCCC-cHHHHhccCCC----------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 661 ------KAYVPQSSWIQTG-TIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 661 ------iayV~Q~pwI~ng-TIreNIlfG~~----------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
++|++|+|.++.+ |++||+.+... .+ +++.+++++..+|.+++. +..+ +.
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~---~~ 143 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL------NRSV---NE 143 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc------cccc---cc
Confidence 7899999998875 89999976421 11 134455666666643221 1111 12
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+||||||||++||||+.++|+++||||||++||+.+.+.+.+ .+...
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 190 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE-GINRL 190 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 499999999999999999999999999999999999988764 34443
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=9.4e-30 Score=264.10 Aligned_cols=165 Identities=25% Similarity=0.370 Sum_probs=128.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc---CCCCCeEEEcC-------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~---~~~G~~I~i~g------- 659 (779)
.++++|++|.|+.++ ...++++ |+||+|++||+++|+||+|||||||+++|.|+++ |++| +|.++|
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~-~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G-~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILN-DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG-QILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc--ccccccc-CceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce-EEEECCEECChHH
Confidence 367899999997521 1357899 9999999999999999999999999999999999 8999 999887
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCCCC-----CHHHHH-HHHHHccchHHHhhccCCCCcccc-CCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGKDM-----RQSFYE-EVLEGCALNQDIEMWADGDLSVVG-ERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~~~-----d~~~y~-~vl~ac~L~~di~~Lp~Gd~T~IG-E~G~nLSGGQKQR 728 (779)
.++|++|++.++++ |++|||.|+..+ ..+... +..+ + ..++....+.+. ....+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-----~--~~l~~~~l~~~~~~~~~~LS~G~~qr 151 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-----D--VLLRDLALTRIGGNLVKGISGGERRR 151 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHH-----H--HHHHhhcchhhhcccccCcCHHHHHH
Confidence 38999999999987 999999875321 011111 0000 0 022333333333 3457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
++||||++++|+++||||||++||+.+.+++.+ .+..
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~-~l~~ 188 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS-TLSQ 188 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHH-HHHH
Confidence 999999999999999999999999999887765 3443
No 236
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.7e-30 Score=275.01 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=131.6
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-----CCCCCeEEEcC---
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-----~~~G~~I~i~g--- 659 (779)
+..++++|++++|+. .++++ |+||+|++||+++|+|++|||||||+++|.|..+ |.+| +|.++|
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G-~I~~~g~~i 108 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVK-KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG-ALMFDGEDI 108 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCce-EEEECCEEh
Confidence 346899999999964 35899 9999999999999999999999999999999754 4899 898865
Q ss_pred ------------eEEEEccccccCCCcHHHHhccCCC---C-CH----HHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---M-RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 ------------~iayV~Q~pwI~ngTIreNIlfG~~---~-d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++||+|+|.++..|++|||.++.. . ++ ++..++++..++.+.+. .....+..
T Consensus 109 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~ 181 (286)
T PRK14275 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNAL 181 (286)
T ss_pred hhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChh
Confidence 3899999999999999999988632 1 11 23344555555533221 12345678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
.||||||||++||||++++|+++||||||++||+++.+.+.+ .++.
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~ 227 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED-LIQE 227 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999988765 4443
No 237
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=9.1e-30 Score=283.53 Aligned_cols=153 Identities=25% Similarity=0.431 Sum_probs=133.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ ++||+|++||+++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 3 ~L~~~nls~~y~~------~~vL~-~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLD-GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG-TVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEECC------EEEEE-eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEEcCcCCHHH
Confidence 4889999999964 46899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEcccccc-CCCcHHHHhccCCC-----------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ---KKAYVPQSSWI-QTGTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ---~iayV~Q~pwI-~ngTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+++||+|++-+ ++.|++||+.+|.. .++++.+++++..++.+..+. ...+||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgG 143 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGG 143 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHH
Confidence 38999999987 78999999988741 123466778888888654432 34689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||++||||++++|+++||||||++||+.+...+.+
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~ 180 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 9999999999999999999999999999999887653
No 238
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=1e-29 Score=275.37 Aligned_cols=159 Identities=29% Similarity=0.453 Sum_probs=131.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..++++|++++|++ ..+++ |+||+|++||+++++||+|||||||+++|+|+++|++| +|.++|
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~-~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G-~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVD-GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG-SISLCGEPVPSRARH 77 (306)
T ss_pred ceEEEEeEEEEECC------eEEEe-cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEecccchHH
Confidence 36899999999964 45899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEccccccCC-CcHHHHhcc-CCC--CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQT-GTIRENILF-GKD--MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~n-gTIreNIlf-G~~--~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.+|||||++.++. .|++||+.| +.- .+. ++.+++++.++|.+.. ++.+ .+||||||||
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qr 146 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-------DAKV----GELSGGMKRR 146 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-------cCch----hhCCHHHHHH
Confidence 3899999999875 799999985 321 122 3445566666664332 3333 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
++||||+..+|++++|||||++||+++.+.+++ .+..+
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l 184 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSL 184 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999988766 34443
No 239
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-29 Score=264.46 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=125.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
-++++|++++|+. .++++ ++||+|++||.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYGK------IQALH-EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG-RIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeCC------ceeee-eeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEecCCCCHHH
Confidence 4889999999964 46899 99999999999999999999999999999999999999 998877
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCCC-CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++|++|++-++. .|++|||.++..+ +.++.++.++ +-++.++..+++ .......||||||||++|||
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHH
Confidence 2899999999988 4999999886432 2222222111 111112111111 22356789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|++++|+|+||||||++||+.+.+.+.+
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~ 178 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFD 178 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence 9999999999999999999999887765
No 240
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=6e-30 Score=282.93 Aligned_cols=143 Identities=33% Similarity=0.415 Sum_probs=123.1
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------------------eEEEEccc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQS 667 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------------------~iayV~Q~ 667 (779)
...++ |+||+|++||+++|+|++|||||||+++|.|+++|++| +|.++| .++||+|+
T Consensus 37 ~~~l~-~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G-~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 37 VVGVA-NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG-SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEEEE-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 35688 99999999999999999999999999999999999999 999986 38999999
Q ss_pred cccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 668 SWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 668 pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
+.++. .|++|||.||.. .+ +++.+++++..+|.+..+.. ..+||||||||++||||++++|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 99987 799999998742 22 23556777777776554433 3479999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 740 DVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If~~~i 764 (779)
+|+|||||||+||+.+.+.+++...
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~ 208 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELL 208 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHH
Confidence 9999999999999999998877543
No 241
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=1.4e-29 Score=276.79 Aligned_cols=176 Identities=22% Similarity=0.334 Sum_probs=136.3
Q ss_pred ccEEEeeeEEEeccccc-------cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--
Q 004004 589 VAIDIEAGEYAWDAREE-------NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~-------~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-- 659 (779)
..++++|++.+|+.... ....++++ |+||+|++||.++|+|++|||||||+++|+|+.+|++| +|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~-~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVD-GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEe-eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEE
Confidence 46899999999964110 01245789 99999999999999999999999999999999999999 998876
Q ss_pred --------------eEEEEccccc--cC-CCcHHHHhccCC-----CCCH----HHHHHHHHHccchHHHhhccCCCCcc
Q 004004 660 --------------KKAYVPQSSW--IQ-TGTIRENILFGK-----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 660 --------------~iayV~Q~pw--I~-ngTIreNIlfG~-----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
.++||+|+|. ++ ..||.|||.++. ..++ ++.+++++..+|.++.
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~---------- 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL---------- 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------
Confidence 3899999983 55 689999996531 2332 3345667777774332
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
.......||||||||++||||++.+|+++|+|||||+||+.+.+.|.+ .+..+-++ .++.|+|
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTH 220 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAH 220 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeC
Confidence 123456899999999999999999999999999999999999998876 34444332 3344555
No 242
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.96 E-value=1.9e-29 Score=266.44 Aligned_cols=170 Identities=23% Similarity=0.342 Sum_probs=137.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC----CCCCeEEEcC------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG------ 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~----~~G~~I~i~g------ 659 (779)
.++++|++++| + .++++ ++||+|++||+++|+|++|||||||+++|.|+.+| ++| +|.++|
T Consensus 4 ~l~~~~l~~~~-~------~~il~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G-~i~~~g~~i~~~ 74 (254)
T PRK10418 4 QIELRNIALQA-A------QPLVH-GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAG-RVLLDGKPVAPC 74 (254)
T ss_pred EEEEeCeEEEe-c------cceec-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCC-EEEECCeecccc
Confidence 58999999999 3 35899 99999999999999999999999999999999999 999 998876
Q ss_pred -----eEEEEccccc-cCC--CcHHHHhcc-----CCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSW-IQT--GTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pw-I~n--gTIreNIlf-----G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++||+|++- .|+ .|+.+|+.+ +.+.++++++++++.+++.+. ++.++.....||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~ 146 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGML 146 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHH
Confidence 3899999984 343 688888753 434445677888888877542 2345566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||++||||++++|+++|||||||+||+.+.+.+.+ ++....++ .++.++|
T Consensus 147 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 147 QRMMIALALLCEAPFIIADEPTTDLDVVAQARILD-LLESIVQKRALGMLLVTH 199 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHHHhcCcEEEEEec
Confidence 99999999999999999999999999998877654 44444332 2344555
No 243
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.2e-30 Score=269.47 Aligned_cols=157 Identities=26% Similarity=0.381 Sum_probs=129.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ ++||+|++||.++|+||+|||||||+++|.|.++| ++| +|.++|
T Consensus 4 ~l~i~~v~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVE-DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG-EVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEECC------Eeeee-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcce-EEEECCEeccc
Confidence 4889999999964 36899 99999999999999999999999999999999874 699 998876
Q ss_pred ----------eEEEEccccccCC-CcHHHHhccCCC----CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 ----------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 ----------~iayV~Q~pwI~n-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++-++. .|++||+.++.. .+ +++.+++++..++.+.++ ........+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGG 148 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCccc
Confidence 2899999999887 699999986531 11 234455666666643332 223455678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||||++||||+.++|+++||||||++||+.+...+.+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (258)
T PRK14241 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED 189 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999987754
No 244
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=2e-29 Score=261.19 Aligned_cols=164 Identities=22% Similarity=0.328 Sum_probs=128.9
Q ss_pred EEEeeeEEEeccccc-cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc--C--------
Q 004004 591 IDIEAGEYAWDAREE-NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~-~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~--g-------- 659 (779)
++++|++++|+.... +...++++ |+||+|++||.++|+|++|||||||+++|.|.++|++| +|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLK-NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG-RILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEe-cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEEecCCCccchhhc
Confidence 678999999963100 11136899 99999999999999999999999999999999999999 99886 3
Q ss_pred -----------eEEEEccccccCC-CcHHHHhccCC---CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQT-GTIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~n-gTIreNIlfG~---~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|+|.++. -|++|||.++. ..+ +++.+++++..++.++.. ...+.+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCccc
Confidence 3799999998765 59999997631 122 234445555555543321 124678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||||||++||||+.++|+++||||||++||+++.+.+.+ .+...
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 195 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEA 195 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999988765 34433
No 245
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=1.5e-29 Score=256.65 Aligned_cols=142 Identities=27% Similarity=0.464 Sum_probs=121.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEcC--------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~g-------- 659 (779)
.++++|++|+|+........++++ ++||++++||.++|+||+|||||||+++|+|++ +|.+| +|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~-~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLK-NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCccccccee-cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEeCchHhh
Confidence 488999999997410001257899 999999999999999999999999999999999 99999 998876
Q ss_pred --eEEEEccccccCC-CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 660 --~iayV~Q~pwI~n-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
.++|++|++.++. .|++|||.++.... .||||||||++||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------------~LS~G~~qrv~laral~ 127 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------------GLSGGERKRVSIALELV 127 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHHHHHH
Confidence 3899999999876 59999997642110 89999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
++|+++||||||++||.++.+.+++ .+...
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~-~l~~~ 157 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMS-LLRRL 157 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999887764 44443
No 246
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=266.84 Aligned_cols=157 Identities=24% Similarity=0.377 Sum_probs=126.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC-----CCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-----~G~~I~i~g----- 659 (779)
.++++|++++|++ .++++ |+||+|++||.++|+|++|||||||+++|.|+++|. +| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVK-NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG-RILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEECC------EEeec-cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-eEEECCEEccc
Confidence 4789999999964 46899 999999999999999999999999999999999864 79 898866
Q ss_pred ----------eEEEEccccccCC-CcHHHHhccCCC---C-CHH----HHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 ----------KKAYVPQSSWIQT-GTIRENILFGKD---M-RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 ----------~iayV~Q~pwI~n-gTIreNIlfG~~---~-d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++. .|++||+.++.. . +++ +.++.++..++.+.+ ++.. .....+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~ 148 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRL----KTPATG 148 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhh----cCCccc
Confidence 3899999999888 599999986532 1 222 223334444443322 1222 234678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||||++||||+.++|+++||||||++||+.+.+.+.+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 189 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999887665
No 247
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=1.7e-29 Score=267.50 Aligned_cols=169 Identities=17% Similarity=0.289 Sum_probs=130.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ ++||+|++||+++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 6 ~l~~~~l~~~~~~------~~il~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYGP------RKGCR-DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-EVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcCC------ceeee-eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCcccccccccc
Confidence 4899999999964 46899 99999999999999999999999999999999999999 998766
Q ss_pred ------------eEEEEccccc---cCCCcHHHHhccCC----CCCH----HHHHHHHHHccchHHHhhccCCCCccccC
Q 004004 660 ------------KKAYVPQSSW---IQTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (779)
Q Consensus 660 ------------~iayV~Q~pw---I~ngTIreNIlfG~----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE 716 (779)
.++|++|++. ..+.|+.|||.+.. ..+. ++..++++..++.+ +....
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~ 147 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDD 147 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhC
Confidence 2799999984 23468899986421 1111 12223333333321 34557
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
.+.+||||||||++||||+.++|+++||||||++||+.+.+.+.+ +++...++ .++.|+|
T Consensus 148 ~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTH 210 (258)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeC
Confidence 788999999999999999999999999999999999999887665 45544432 3345555
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2e-29 Score=250.46 Aligned_cols=124 Identities=41% Similarity=0.675 Sum_probs=114.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|+++.|++ . ..++++ ++||++++|+.++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 l~~~~l~~~~~~---~-~~~~l~-~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---R-PKPVLK-DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---C-Cccccc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhhhcCHHHH
Confidence 468999999975 1 136899 99999999999999999999999999999999999999 999887
Q ss_pred --eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
.++|++|++.+++.|++||+ ||||||||++||||+..
T Consensus 75 ~~~i~~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 75 RKNIAYVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred HhhEEEEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhc
Confidence 37999999999999999998 99999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 738 NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 738 ~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+|+++||||||++||+.+..++.+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~ 137 (171)
T cd03228 114 DPPILILDEATSALDPETEALILE 137 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHH
Confidence 999999999999999999877654
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.2e-29 Score=259.07 Aligned_cols=160 Identities=27% Similarity=0.364 Sum_probs=128.3
Q ss_pred eeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------------
Q 004004 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------------- 659 (779)
Q Consensus 595 n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------------- 659 (779)
|++++|++ ..+ |+||+|++ |.++|+||+|||||||+++|+|+++|.+| +|.++|
T Consensus 5 ~l~~~~~~------~~~---~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD------FTL---KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG-TIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC------eee---CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEecccccchhhhhhH
Confidence 78888864 222 89999999 99999999999999999999999999999 998876
Q ss_pred --eEEEEccccccCC-CcHHHHhccCCCC-----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 --~iayV~Q~pwI~n-gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|++.++. .|++||+.++... ++++.++.++..++.+.. .....+||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 142 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVAL 142 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHH
Confidence 3899999999985 6999999876432 233556666666665433 34567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||++++|+++||||||++||+.+.+.+++ .+....++ .++.++|
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH 190 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRLQLLP-ELKQIKKNLNIPVIFVTH 190 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEec
Confidence 999999999999999999999999887765 34444332 2344445
No 250
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.8e-29 Score=263.61 Aligned_cols=151 Identities=31% Similarity=0.480 Sum_probs=129.9
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|+++.|+. .+++ ++||+|++||+++|+|++|||||||+++|.|.++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~-------~~l~-~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G-~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWKE-------FKLK-NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeCC-------ceee-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcCcCChhHc
Confidence 468899999963 2699 99999999999999999999999999999999999999 999987
Q ss_pred eEEEEccccccCC-CcHHHHhccCCCC-------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ~iayV~Q~pwI~n-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++||+|++.++. .|++||+.++... .+++..+.++.++|.++++..| .+||||||||++|
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 140 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAI 140 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHH
Confidence 4899999999884 7999999875321 1234566777788876655433 5799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||++++|++++|||||++||+.+.+.+.+
T Consensus 141 aral~~~p~llllDEPt~gLD~~~~~~l~~ 170 (235)
T cd03299 141 ARALVVNPKILLLDEPFSALDVRTKEKLRE 170 (235)
T ss_pred HHHHHcCCCEEEECCCcccCCHHHHHHHHH
Confidence 999999999999999999999999987665
No 251
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2.7e-29 Score=267.58 Aligned_cols=159 Identities=24% Similarity=0.380 Sum_probs=131.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC--------CCCeEEEcCe--
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--------SGAAIKVHGK-- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~--------~G~~I~i~g~-- 660 (779)
++++|++++|+. .++++ ++||+|++|+.++|+||+|||||||+++|.|+++|. +| +|.++|.
T Consensus 2 l~~~nl~~~~~~------~~il~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G-~i~~~g~~~ 73 (272)
T PRK13547 2 LTADHLHVARRH------RAILR-DLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG-DVTLNGEPL 73 (272)
T ss_pred eEEEEEEEEECC------EeEEe-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCce-EEEECCEEc
Confidence 678999999964 46899 999999999999999999999999999999999998 89 9999872
Q ss_pred -----------EEEEccccc-cCCCcHHHHhccCCC-C----------CHHHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 661 -----------KAYVPQSSW-IQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 661 -----------iayV~Q~pw-I~ngTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
++|++|++- +++.|++|||.++.. . ++++.+++++..++. +..+..
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 142 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRD 142 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCC
Confidence 699999985 678999999988631 1 122344555555553 334556
Q ss_pred CCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 718 GINLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly---------~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
...||||||||++||||++ .+|+++||||||++||+.+.+.+.+ .+....+
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~ 202 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD-TVRRLAR 202 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHH-HHHHHHH
Confidence 7899999999999999999 5999999999999999999988765 4444444
No 252
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.6e-29 Score=265.44 Aligned_cols=159 Identities=21% Similarity=0.359 Sum_probs=132.6
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC-----CCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-----~G~~I~i~g---- 659 (779)
..++++|++++|+. .++++ |+||++++|+.++|+|++|||||||+++|.|+++|. +| +|.++|
T Consensus 6 ~~l~~~nl~~~~~~------~~il~-~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G-~i~~~g~~i~ 77 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILE-GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG-RVEFFNQNIY 77 (261)
T ss_pred ceEEEeeEEEEeCC------eeEee-ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccc-eEEECCEEhh
Confidence 35899999999964 35899 999999999999999999999999999999999985 78 887755
Q ss_pred -----------eEEEEccccccCCCcHHHHhccCCC---C-C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSWIQTGTIRENILFGKD---M-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pwI~ngTIreNIlfG~~---~-d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|++.++..|++||+.++.. . + +++..++++..++.+.+.. ..+..+.+
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~ 150 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALD 150 (261)
T ss_pred ccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCccc
Confidence 2899999999999999999986421 1 1 2345667777777554432 23456789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||||||||++||||+.++|+++||||||++||+.+.+.+++.
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~ 192 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999877653
No 253
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=3.1e-29 Score=274.73 Aligned_cols=154 Identities=31% Similarity=0.482 Sum_probs=129.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++++|++ ..+++ |+||+|++|+.++++||+|||||||+++|+|+++|++| +|.++|
T Consensus 40 ~~i~i~nl~k~y~~------~~~l~-~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G-~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYGD------KAVVN-GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAG-KITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce-EEEECCEECCcchHH
Confidence 46999999999964 46899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEccccccC-CCcHHHHhcc-CCC--CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQ-TGTIRENILF-GKD--MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~-ngTIreNIlf-G~~--~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++||||++.++ +.|++||+.| +.- .+ .++.+++++.++|.+ ..++.+ .+||||||||
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqr 180 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRR 180 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHH
Confidence 389999999985 6799999975 321 22 223445555555543 233333 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++||||+..+|+++||||||++||+.+.+.+.+
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~ 213 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWE 213 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999988765
No 254
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=3.9e-29 Score=270.45 Aligned_cols=152 Identities=26% Similarity=0.405 Sum_probs=130.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ ..+++ |+||+|++||.++|+||+|||||||+++|+|.++|++| +|.++|
T Consensus 3 l~~~~l~~~~~~------~~~l~-~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 3 IRVSSLTKLYGT------QNALD-EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEECC------EEEEE-EeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccChHHHH
Confidence 789999999964 45899 99999999999999999999999999999999999999 999987
Q ss_pred -eEEEEccccccCCC-cHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++|+||+|.++.+ |++||+.+... .+ .++.+++++..+|.+.. ..+..+||||||||++
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~ 143 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVG 143 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHH
Confidence 38999999999876 99999975321 12 23456666666665443 3445789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||+..+|+++||||||++||+.+.+.+++
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~ 174 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRN 174 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 9999999999999999999999999988766
No 255
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=5.5e-29 Score=264.88 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=134.4
Q ss_pred cEEEeeeEEEeccccc---cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------
Q 004004 590 AIDIEAGEYAWDAREE---NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~---~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------- 659 (779)
.++++|++++|+.... ....++++ |+||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~-~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVK-PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-ELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceee-eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCc
Confidence 4899999999963100 01246899 99999999999999999999999999999999999999 999876
Q ss_pred ------eEEEEccccc--cC-CCcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ------KKAYVPQSSW--IQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ------~iayV~Q~pw--I~-ngTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|+|. ++ +-|+.||+.++. .++ +++.+++++.++|.++... ....+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS 151 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS----------YYPHMLA 151 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh----------cCchhcC
Confidence 3899999985 33 348999986531 122 2355677888888433221 1235899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||||++||||++++|+++||||||++||+++.+.+.+ .+....++ .++.++|
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN-LMLELQEKQGISYIYVTQ 208 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEeC
Confidence 999999999999999999999999999999998876654 45444332 2445555
No 256
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=4.3e-29 Score=250.64 Aligned_cols=129 Identities=27% Similarity=0.487 Sum_probs=115.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++| +++ ++||++++|+.++|+|++|||||||+++|.|+++|++| +|.++|
T Consensus 4 ~l~~~~l~~~~----------~l~-~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG----------AVR-DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG-EITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe----------eec-ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccCHHH
Confidence 48899999876 477 99999999999999999999999999999999999999 999877
Q ss_pred ----eEEEEcccc----ccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 ----KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ----~iayV~Q~p----wI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|++ ..++.|++||+.++.. ||||||||++|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~l 115 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVL 115 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHH
Confidence 389999985 4667899999987532 99999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++.+|+++||||||++||+++.+.+.+ +++..
T Consensus 116 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 150 (182)
T cd03215 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYR-LIREL 150 (182)
T ss_pred HHHHccCCCEEEECCCCcCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988765 44443
No 257
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=6.2e-29 Score=264.59 Aligned_cols=167 Identities=24% Similarity=0.318 Sum_probs=130.4
Q ss_pred cEEEeeeEEEecccc---ccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------
Q 004004 590 AIDIEAGEYAWDARE---ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~---~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------ 660 (779)
.|+++|+++.|+... .+.+.++++ |+||+|++|++++|+||+|||||||+++|.|.++|++| +|.++|.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG-~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLN-NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG-NVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEe-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEeccccC
Confidence 378999999996200 001256899 99999999999999999999999999999999999999 9988763
Q ss_pred ----------EEEEccccc--c-CCCcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 661 ----------KAYVPQSSW--I-QTGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 661 ----------iayV~Q~pw--I-~ngTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
++|++|++. + .+.|++||+.+.. ..+ +++.+++++.+++..+ .......
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~ 150 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPP 150 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCc
Confidence 899999983 3 3589999996531 112 2245556665555322 2234567
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
.||||||||++||||+.++|+++||||||++||+++.+.+.+ ++....+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~~~~ 199 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-LLKKLQQ 199 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHHH
Confidence 899999999999999999999999999999999999877654 5555443
No 258
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.8e-29 Score=252.43 Aligned_cols=136 Identities=23% Similarity=0.393 Sum_probs=118.4
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEcC--------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~g-------- 659 (779)
.++++|+++.|++. ..+.++++ ++||++++|++++|+||+|||||||+++|.|.+ ++.+| +|.++|
T Consensus 3 ~l~~~~l~~~~~~~--~~~~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G-~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK--GGKRQLLN-NISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG-EILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC--CCceEeEE-ccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce-EEEECCEehHHHhh
Confidence 48899999999641 11246899 999999999999999999999999999999986 48999 999887
Q ss_pred -eEEEEccccccCCC-cHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 660 -KKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 660 -~iayV~Q~pwI~ng-TIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
.++|++|++-++.+ |++||+.++.. ++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhc
Confidence 48999999988774 99999986421 00 899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 738 NSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 738 ~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
+|+++||||||++||+.+.+.+.+.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~ 150 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRF 150 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHH
Confidence 9999999999999999999887763
No 259
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=5.3e-29 Score=261.60 Aligned_cols=161 Identities=21% Similarity=0.355 Sum_probs=127.9
Q ss_pred EEeccccccCCCcccccCCcEEee-----CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-eEEEEccccc-c
Q 004004 598 YAWDAREENFKKPTIKLTDKMKIM-----KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSW-I 670 (779)
Q Consensus 598 Fsw~~~~~~~~~~~L~~~inl~I~-----~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-~iayV~Q~pw-I 670 (779)
|+|++ ....+. +++|+++ +||+++|+||+|||||||+++|.|+++|.+| +|.++| .++|++|++. .
T Consensus 1 ~~y~~-----~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G-~i~~~g~~i~~~~q~~~~~ 73 (246)
T cd03237 1 YTYPT-----MKKTLG-EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-DIEIELDTVSYKPQYIKAD 73 (246)
T ss_pred CCCcc-----cccccC-cEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCceEEEecccccCC
Confidence 56764 234677 7777776 7999999999999999999999999999999 999999 8999999987 4
Q ss_pred CCCcHHHHhccCCC-C--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 004004 671 QTGTIRENILFGKD-M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (779)
Q Consensus 671 ~ngTIreNIlfG~~-~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp 747 (779)
++.|++||+.+... . ++++.+++++.++|.+.++ ....+||||||||++||||+.++|++||||||
T Consensus 74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 78999999975432 1 2344567788777754433 34567999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhHHHH---HHHhHhcc
Q 004004 748 FSAVDAHTGTHLFKARTFSLFH---QLLFSINH 777 (779)
Q Consensus 748 ~SALDa~t~~~If~~~i~g~L~---~~~~~~~~ 777 (779)
|++||+++...+.+ .+....+ ..++.|+|
T Consensus 143 t~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 143 SAYLDVEQRLMASK-VIRRFAENNEKTAFVVEH 174 (246)
T ss_pred cccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 99999999887654 3544433 23445555
No 260
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=269.39 Aligned_cols=175 Identities=20% Similarity=0.265 Sum_probs=134.5
Q ss_pred cEEEeeeEEEeccccc----cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC------
Q 004004 590 AIDIEAGEYAWDAREE----NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~----~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------ 659 (779)
.++++|++++|+.... .....+++ |+||+|++||+++|+|++|||||||+++|+|+.++++| +|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~-~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G-~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALD-GVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG-ELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEe-eeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEcCcC
Confidence 5899999999964110 01235799 99999999999999999999999999999999999999 998877
Q ss_pred ----------eEEEEccccc--cC-CCcHHHHhccC----CCCC----HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ----------KKAYVPQSSW--IQ-TGTIRENILFG----KDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ----------~iayV~Q~pw--I~-ngTIreNIlfG----~~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
+++||+|+|. +. .-||.+|+..+ ...+ +++..+.++.++|.++. .+ ...
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~p 152 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------YD----RYP 152 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------hc----CCC
Confidence 3899999983 33 35899998532 1122 24556777777775322 11 234
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
..||||||||++||||+..+|+++|+|||||+||..+.++|++- +..+-++ .++.|+|
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~l-L~~l~~~~g~til~iTH 213 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNL-MMDLQQELGLSYVFISH 213 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeC
Confidence 68999999999999999999999999999999999999988763 3333332 3444555
No 261
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=4.6e-29 Score=270.09 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=122.9
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC------------eEEEEccccccCCC-cH
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVPQSSWIQTG-TI 675 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------~iayV~Q~pwI~ng-TI 675 (779)
.++++ |+||+|++||+++|+||+|||||||+++|+|+++|++| +|.++| .++|++|++.++.. |+
T Consensus 6 ~~~l~-~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVD-GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEe-eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 46899 99999999999999999999999999999999999999 999987 38999999998875 99
Q ss_pred HHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 004004 676 RENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (779)
Q Consensus 676 reNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~ 748 (779)
+||+.+... .+ +++.+++++.++|.+..+. +..+||||||||++||||+.++|+++||||||
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999986421 11 2456777888877654432 34689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhHH
Q 004004 749 SAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 749 SALDa~t~~~If~~~i~g~ 767 (779)
++||+.+.+.+.+ .+...
T Consensus 153 ~gLD~~~~~~l~~-~l~~~ 170 (302)
T TIGR01188 153 TGLDPRTRRAIWD-YIRAL 170 (302)
T ss_pred cCCCHHHHHHHHH-HHHHH
Confidence 9999999988765 34433
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.8e-29 Score=261.46 Aligned_cols=158 Identities=28% Similarity=0.345 Sum_probs=128.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..++++|++++|++ .+.++ |+||++++||+++|+|++|||||||+++|.|.++|.+| +|.++|
T Consensus 9 ~~i~~~~~~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G-~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 9 DVFNISRLYLYIND------KAILK-DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS-KIKVDGKVLYFGKDI 80 (257)
T ss_pred hheeeeeEEEecCC------ceeEe-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC-ceeEcCEEEECCccc
Confidence 46899999999964 46899 99999999999999999999999999999999999997 665544
Q ss_pred ----------eEEEEccccccCCC-cHHHHhccCCC---C-CHH----HHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 ----------KKAYVPQSSWIQTG-TIRENILFGKD---M-RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ng-TIreNIlfG~~---~-d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++|++|+|-++.+ |++|||.++.. . +++ +.+++++..++++.+. ....+.+..
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~ 153 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQ 153 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCccc
Confidence 37999999999875 99999987532 1 222 2344555555543221 123456788
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||||++||||++++|+++||||||++||..+.+.+.+
T Consensus 154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~ 194 (257)
T PRK14246 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999887654
No 263
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=9e-29 Score=257.53 Aligned_cols=152 Identities=32% Similarity=0.486 Sum_probs=122.5
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------EEEEccccccCC-CcHHHHhccC
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQT-GTIRENILFG 682 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------iayV~Q~pwI~n-gTIreNIlfG 682 (779)
++ ++||+|++||+++|+||+|||||||+++|.|+++|.+| +|.++|. .+|++|++-++. .|++||+.++
T Consensus 1 l~-~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LK-GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CC-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 35 89999999999999999999999999999999999999 9999873 489999999887 6999999764
Q ss_pred C-----CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 004004 683 K-----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 683 ~-----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa 753 (779)
. ..++ ++.++.++.+++.+..+. ....||||||||++||||+.++|+++||||||++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 147 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 1 2222 235666777777654432 3467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 754 HTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 754 ~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
.+.+.+.+ .+....++ .++.|+|
T Consensus 148 ~~~~~l~~-~l~~~~~~~~~tii~~sH 173 (230)
T TIGR01184 148 LTRGNLQE-ELMQIWEEHRVTVLMVTH 173 (230)
T ss_pred HHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 99987765 34444332 2344444
No 264
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.96 E-value=3.3e-29 Score=295.75 Aligned_cols=148 Identities=26% Similarity=0.422 Sum_probs=124.8
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC---CCCeEEEcCe----------EEEEccccccCC-C
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK----------KAYVPQSSWIQT-G 673 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~---~G~~I~i~g~----------iayV~Q~pwI~n-g 673 (779)
++++|+ |+|+++++||+++|+||+||||||||++|.|+.++. +| +|.++|. ++||+|+++++. .
T Consensus 37 ~~~iL~-~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLK-NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cccccc-CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECCHHHHhhhceeeccccccCccC
Confidence 467999 999999999999999999999999999999999874 78 9999984 599999999985 6
Q ss_pred cHHHHhccCCCCC------HH----HHHHHHHHccchHHHhhccCCCCccccCC--CCCCChHHHHHHHHHHHHccCCCE
Q 004004 674 TIRENILFGKDMR------QS----FYEEVLEGCALNQDIEMWADGDLSVVGER--GINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 674 TIreNIlfG~~~d------~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~--G~nLSGGQKQRIaLARAly~~adI 741 (779)
||||||.|+.... ++ +.+++++..+ +++..+|.||+. +..||||||||++||||++++|++
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v 187 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE
Confidence 9999999864321 11 2233333332 355678999995 489999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHH
Q 004004 742 YIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If~~~i 764 (779)
++||||||+||++++.++.+.+.
T Consensus 188 lllDEPtsgLD~~~~~~l~~~L~ 210 (617)
T TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLK 210 (617)
T ss_pred EEeeCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999887543
No 265
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=1.1e-28 Score=260.32 Aligned_cols=169 Identities=18% Similarity=0.299 Sum_probs=129.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||+|++|++++|+|++|||||||+++|.|.++|.+| +|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYGG------GKGCR-DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG-TATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeCC------ceEee-cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEeccccccccccc
Confidence 4899999999964 35799 99999999999999999999999999999999999999 998864
Q ss_pred ------------eEEEEccccc--c-CCCcHHHHhccC-----CC-CC--HHHHHHHHHHccchHHHhhccCCCCccccC
Q 004004 660 ------------KKAYVPQSSW--I-QTGTIRENILFG-----KD-MR--QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (779)
Q Consensus 660 ------------~iayV~Q~pw--I-~ngTIreNIlfG-----~~-~d--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE 716 (779)
.++|++|++. + +..|+.|||.+. .. .. +++.++.++..++. .+....
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~~~~~~ 144 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID----------PTRIDD 144 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC----------hhhhhc
Confidence 2799999984 2 456889998532 11 11 12222333333332 134556
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+ ++....++ .++.++|
T Consensus 145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 678999999999999999999999999999999999999987765 34444332 2344555
No 266
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=8e-29 Score=273.67 Aligned_cols=161 Identities=24% Similarity=0.361 Sum_probs=128.8
Q ss_pred eeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------------
Q 004004 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------------- 659 (779)
Q Consensus 595 n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------------- 659 (779)
|++++|++ . .+ ++||+|++||+++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 4 ~l~~~~~~------~-~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGD------F-SL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG-EIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECC------E-EE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccCccccccchh
Confidence 67888853 1 23 79999999999999999999999999999999999999 998866
Q ss_pred --eEEEEccccccCC-CcHHHHhccCCCC-C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 --KKAYVPQSSWIQT-GTIRENILFGKDM-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 --~iayV~Q~pwI~n-gTIreNIlfG~~~-d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++||+|++.+|. .|++|||.|+... + +++.+++++..+|.+.++. ...+||||||||++|
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRval 142 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAI 142 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHH
Confidence 2789999999986 5999999987431 1 2346667777777554443 346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||+..+|+++|||||||+||+.+.+.+.+. ++.+.++ -++.++|
T Consensus 143 AraL~~~p~lllLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiiivtH 190 (354)
T TIGR02142 143 GRALLSSPRLLLMDEPLAALDDPRKYEILPY-LERLHAEFGIPILYVSH 190 (354)
T ss_pred HHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHhcCCEEEEEec
Confidence 9999999999999999999999999887653 4444332 2344555
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=1.8e-28 Score=258.56 Aligned_cols=169 Identities=21% Similarity=0.268 Sum_probs=131.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc--ccCCCCCeEEEcC--------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG-------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe--~~~~~G~~I~i~g-------- 659 (779)
.++++|+++.|++ .++++ ++||+|++||+++|+|++|||||||+++|.|. ++|++| +|.++|
T Consensus 7 ~l~~~~l~~~~~~------~~~l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVNE------NEILK-GLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG-DILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeCC------EEeee-cceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc-eEEECCEEcccCCh
Confidence 5899999999964 35899 99999999999999999999999999999998 588999 998876
Q ss_pred ------eEEEEccccccCCC-cHHHHhccCCC----------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ------KKAYVPQSSWIQTG-TIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ------~iayV~Q~pwI~ng-TIreNIlfG~~----------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|++.++.+ |+++|+.++.. .+ .++..++++.+++.+.. .....
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 148 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF----------LSRNV 148 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh----------hcccc
Confidence 27899999998875 78999876421 11 12345566666664211 11222
Q ss_pred C-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH--HHHhHhcc
Q 004004 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH--QLLFSINH 777 (779)
Q Consensus 719 ~-nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~--~~~~~~~~ 777 (779)
. .||||||||++||||++++|+++||||||++||+.+.+.+.+ .+....+ ..++.++|
T Consensus 149 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 149 NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE-GINKLMTSENSIILITH 209 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEec
Confidence 2 599999999999999999999999999999999999988764 4444332 23445555
No 268
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-28 Score=268.16 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=126.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC----CCCCeEEEcC-------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~----~~G~~I~i~g------- 659 (779)
++++|++++|+.. .....+++ |+||+|++||.++|+|++|||||||+++|+|++++ ++| +|.++|
T Consensus 4 L~v~~l~~~~~~~--~~~~~~l~-~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G-~i~~~G~~i~~~~ 79 (326)
T PRK11022 4 LNVDKLSVHFGDE--SAPFRAVD-RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRIS 79 (326)
T ss_pred EEEeCeEEEECCC--CccEEEEe-eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcce-EEEECCEECCcCC
Confidence 7899999999651 11135899 99999999999999999999999999999999973 789 999887
Q ss_pred ----------eEEEEcccccc-C--CCcHHHHhc----cCCCC----CHHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ----------KKAYVPQSSWI-Q--TGTIRENIL----FGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ----------~iayV~Q~pwI-~--ngTIreNIl----fG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++||+|+|.. + .-|+.+|+. ..... ++++..+.++..+|.+... ......
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p 151 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYP 151 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCc
Confidence 28999999952 2 346666553 22111 2345667777777753211 123556
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
..||||||||++||||+..+|+++|+|||||+||+.+...+.+-
T Consensus 152 ~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~l 195 (326)
T PRK11022 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL 195 (326)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988763
No 269
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=242.35 Aligned_cols=154 Identities=25% Similarity=0.444 Sum_probs=126.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------EE
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KA 662 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------ia 662 (779)
..+++.+.+|+. . ..+.++ |+|++|.+||.+++.|||||||||||+.+.|+++|..| +|.++|+ =+
T Consensus 4 l~~~~~sl~y~g---~-~~~~le-~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~gPgaerg 77 (259)
T COG4525 4 LNVSHLSLSYEG---K-PRSALE-DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEGPGAERG 77 (259)
T ss_pred eehhheEEecCC---c-chhhhh-ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccCCCccce
Confidence 346778888876 2 356899 99999999999999999999999999999999999999 9999985 58
Q ss_pred EEccccccCC-CcHHHHhccCCC---CCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 663 YVPQSSWIQT-GTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 663 yV~Q~pwI~n-gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.|.|++-++. -|+.||+.||.. .+++ +-.+.+...+|++.= + ..--.||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-------~----~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-------H----KYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-------c----cceEeecchHHHHHHHHHH
Confidence 9999987654 799999999954 3332 223344445554321 1 1236799999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+..+|+.++|||||+|||+-|.+++-+
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQe 173 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQE 173 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHH
Confidence 999999999999999999999998643
No 270
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-28 Score=268.20 Aligned_cols=160 Identities=17% Similarity=0.261 Sum_probs=127.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc----CCCCCeEEEcC------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG------ 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~----~~~G~~I~i~g------ 659 (779)
-++++|++++|+.. +....+++ |+||+|++||.++|+|+||||||||+++|+|+.+ +++| +|.++|
T Consensus 3 ~L~v~~l~~~y~~~--~~~~~~l~-~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G-~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS--DGWVKAVD-RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD-RMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC--CCCEEEEe-eeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce-EEEECCEECCcC
Confidence 37899999999641 11245899 9999999999999999999999999999999986 5789 998877
Q ss_pred -----------eEEEEcccccc---CCCcHHHHhccC---C--------C--CCHHHHHHHHHHccchHHHhhccCCCCc
Q 004004 660 -----------KKAYVPQSSWI---QTGTIRENILFG---K--------D--MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (779)
Q Consensus 660 -----------~iayV~Q~pwI---~ngTIreNIlfG---~--------~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T 712 (779)
.++||+|+|.. ...||.+||... . + ..+++..++++..+|.+.-+.
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~------- 151 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA------- 151 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH-------
Confidence 38999999973 346899999642 0 0 012456677888888632111
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.......||||||||++||||++.+|+++|+|||||+||+.+.+++.+
T Consensus 152 -~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~ 199 (330)
T PRK15093 152 -MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR 199 (330)
T ss_pred -HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 123346999999999999999999999999999999999999988765
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-28 Score=283.43 Aligned_cols=168 Identities=23% Similarity=0.353 Sum_probs=133.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC--CCCCeEEEcC--------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~--~~G~~I~i~g-------- 659 (779)
.++++|++++|++ .++++ |+||+|++|++++|+||+|||||||+++|.|.++| ++| +|.++|
T Consensus 5 ~l~~~nl~~~~~~------~~il~-~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~ 76 (506)
T PRK13549 5 LLEMKNITKTFGG------VKALD-NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG-EIIFEGEELQASNI 76 (506)
T ss_pred eEEEeeeEEEeCC------eEeec-ceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCH
Confidence 4899999999964 46899 99999999999999999999999999999999986 799 999876
Q ss_pred ------eEEEEccccccCC-CcHHHHhccCCC------CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ------KKAYVPQSSWIQT-GTIRENILFGKD------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ------~iayV~Q~pwI~n-gTIreNIlfG~~------~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++||+|++.++. -|++|||.++.. .+. ++.+++++..++.++ ......+||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 145 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLG 145 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCC
Confidence 2899999998775 599999998743 122 233444444444221 223446899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
||||||++||||+..+|+++|||||||+||+++...+.+ .+..+-++ .++.|+|
T Consensus 146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH 201 (506)
T PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISH 201 (506)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeC
Confidence 999999999999999999999999999999999988775 34443221 3455555
No 272
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.6e-28 Score=262.40 Aligned_cols=162 Identities=27% Similarity=0.424 Sum_probs=138.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++..|+. ...+|+ |+||+|++|+.+|++||+|||||||+++|+|.+.|++| +|.++|
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~-~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G-~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALD-GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC-----CCEEEe-ceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEEcCEeCccCHHHH
Confidence 4788999999972 257899 99999999999999999999999999999999999999 999998
Q ss_pred --eEEEEcccccc-CCCcHHHHhccC-----CC--CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 660 --KKAYVPQSSWI-QTGTIRENILFG-----KD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 660 --~iayV~Q~pwI-~ngTIreNIlfG-----~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
++||+||+|-+ .+-|++||+-|- .+ .++++.+++++.-+|.++- ..+-..||||||||+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl 145 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRL 145 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHH
Confidence 48999999975 568999999763 22 3467888999999887622 234578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ 770 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~ 770 (779)
+||+|+..+|++||||||||+||+.+...+.+ .++.+-++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~-~l~~l~~~ 185 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWE-LLRELAKE 185 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHH-HHHHHHhC
Confidence 99999999999999999999999999887654 45555553
No 273
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=2e-28 Score=283.12 Aligned_cols=153 Identities=23% Similarity=0.346 Sum_probs=127.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
-|+++|++++|++ .++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|
T Consensus 4 ~i~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFPG------VKALS-GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG-SILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeCC------eEEee-eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHH
Confidence 4889999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC-------CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD-------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~-------~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++||+|++-++. -|++|||.++.. ++. ++.+++++..+|.+.. ...-.+|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 144 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSI 144 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCH
Confidence 2899999987765 599999998642 122 2344455555543221 233457999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||++||||+..+|+++||||||++||+.+.+.+.+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 182 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999988775
No 274
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=3.4e-28 Score=281.60 Aligned_cols=154 Identities=23% Similarity=0.387 Sum_probs=132.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 11 ~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYSG------VEVLK-GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeCC------ceeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHH
Confidence 5899999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCCCC---HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~~d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
.++|++|++.++. -|++||+.|+.... +++.+++++..+|.++.+ .+..+||||||||++|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 151 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEI 151 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHH
Confidence 2899999998776 59999999875322 345666777776643322 2346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|||+..+|+++||||||++||+.+.+.+.+.
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 182 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSR 182 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999887763
No 275
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=4.3e-28 Score=265.02 Aligned_cols=161 Identities=17% Similarity=0.312 Sum_probs=127.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC---CCCeEEEcC------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------ 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~---~G~~I~i~g------ 659 (779)
..++++|++++|... +...+.++ |+||+|++||+++|+|+||||||||+++|+|+++|. +| +|.++|
T Consensus 11 ~~L~i~~l~~~~~~~--~~~~~~l~-~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG-~I~~~G~~i~~~ 86 (330)
T PRK09473 11 ALLDVKDLRVTFSTP--DGDVTAVN-DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG-SATFNGREILNL 86 (330)
T ss_pred ceEEEeCeEEEEecC--CCCEEEEe-eeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCe-EEEECCEECCcC
Confidence 358999999999641 11245899 999999999999999999999999999999999985 99 998876
Q ss_pred -----------eEEEEccccc--c-CCCcHHHHhccC----CCCCH----HHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 660 -----------KKAYVPQSSW--I-QTGTIRENILFG----KDMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 660 -----------~iayV~Q~pw--I-~ngTIreNIlfG----~~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
.++||+|+|. + ..-|+.+||... ...+. ++..+.++..+| |++. +.++..
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~ 158 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMY 158 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCC
Confidence 3899999983 3 346788877532 12332 233344444443 3332 235667
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
...||||||||++||||++.+|+++|+||||||||+.+.+.|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~ 202 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT 202 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998766
No 276
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=2e-28 Score=253.93 Aligned_cols=152 Identities=23% Similarity=0.292 Sum_probs=120.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcc-ccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SSW 669 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q-~pw 669 (779)
+.++|.+..|+. .++++ |+||+|++|++++|+|++|||||||+++|.|+++|.+| +|.++|...+..+ ...
T Consensus 23 l~~~~~~~~~~~------~~il~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE------FWALK-DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGG 94 (224)
T ss_pred hhhhhhhhhcCC------eEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhccccc
Confidence 456666666653 56899 99999999999999999999999999999999999999 9999997554333 233
Q ss_pred c-CCCcHHHHhccCCC---CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 670 I-QTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 670 I-~ngTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
+ .+.|++||+.++.. .+. ++.+++++..++.+.++ + ...+||||||||++||||++++|++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-------L----PVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-------C----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3 46799999987532 122 23445555555543332 2 3357999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHH
Q 004004 742 YIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If~ 761 (779)
+||||||++||+.+.+.+++
T Consensus 164 lllDEP~~gLD~~~~~~~~~ 183 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQR 183 (224)
T ss_pred EEEeCCcccCCHHHHHHHHH
Confidence 99999999999999888766
No 277
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.3e-28 Score=281.18 Aligned_cols=153 Identities=25% Similarity=0.331 Sum_probs=128.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||++++|++++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~-~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFPG------VKALD-DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAG-SILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEECC------EEEEe-eeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHH
Confidence 4889999999964 35899 99999999999999999999999999999999999999 998876
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++||+|++.++. .|++||+.++.. .+ +++.+++++.++|.+. ......+||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 144 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIG 144 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHH
Confidence 3899999998876 499999998631 12 2244555555555322 12345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||++||||+..+|+++||||||++||+++.+.+.+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 181 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR 181 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999988865
No 278
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=7.2e-28 Score=255.50 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=130.0
Q ss_pred ccEEEeeeEEEecccc--------------ccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCe
Q 004004 589 VAIDIEAGEYAWDARE--------------ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~--------------~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~ 654 (779)
..|+++|++-.|.... .....++++ ++||+|++|+.++|+||+|||||||+++|+|+++|.+| +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~-~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALD-DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-K 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-E
Confidence 3578888887776521 012345788 99999999999999999999999999999999999999 9
Q ss_pred EEEcCeEEEEccccccCC-CcHHHHhccCC---CCCHHHH----HHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 655 IKVHGKKAYVPQSSWIQT-GTIRENILFGK---DMRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 655 I~i~g~iayV~Q~pwI~n-gTIreNIlfG~---~~d~~~y----~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
|.++|.+++++|++++.+ .|++|||.++. .++.++. +++++..++.+.+ .....+||||||
T Consensus 81 I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~ 149 (264)
T PRK13546 81 VDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMR 149 (264)
T ss_pred EEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHH
Confidence 999999999999998764 69999997642 2333332 3344444554433 335678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||++||||++++|+++||||||++||+.+.+.+.+.
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~ 185 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 999999999999999999999999999998887663
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=3.2e-28 Score=281.39 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=131.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC--CCCCeEEEcC---------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG--------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~--~~G~~I~i~g--------- 659 (779)
++++|++++|+. .++++ ++||++++|++++|+||+|||||||+++|.|+++| .+| +|.++|
T Consensus 2 l~i~~l~~~~~~------~~il~-~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G-~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALD-GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG-EIYWSGSPLKASNIR 73 (500)
T ss_pred EEEEeEEEEeCC------eEeec-ceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHH
Confidence 689999999964 46899 99999999999999999999999999999999986 799 999877
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCCC-------CH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++||+|++.++. -|++||+.++..+ +. ++.+++++.+++.+.. ++. ...+||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~LS 143 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTR----PVGDYG 143 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccC----chhhCC
Confidence 3899999998766 5999999886431 11 2334444444442211 112 235799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
||||||++||||++++|+++||||||++||+.+.+.+.+ .+..+-++ .++.|+|
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitH 199 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISH 199 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeC
Confidence 999999999999999999999999999999999988876 34433222 2345555
No 280
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=1.9e-28 Score=286.26 Aligned_cols=176 Identities=23% Similarity=0.344 Sum_probs=137.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~ 667 (779)
-++++|++++|++ +.++++ |+||+|++|++++|+||+|||||||+++|.|+.+|.+| +|.+++ .++||+|+
T Consensus 4 ~i~~~nls~~~~~-----~~~il~-~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~~~i~~v~Q~ 76 (552)
T TIGR03719 4 IYTMNRVSKVVPP-----KKEILK-DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG-EARPAPGIKVGYLPQE 76 (552)
T ss_pred EEEEeeEEEecCC-----CCeeec-CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEecc
Confidence 4889999999963 146899 99999999999999999999999999999999999999 999874 69999999
Q ss_pred cccCC-CcHHHHhccCCC-------------------CC--------HHHHHHHHHHccchH-------HHhhccCCCCc
Q 004004 668 SWIQT-GTIRENILFGKD-------------------MR--------QSFYEEVLEGCALNQ-------DIEMWADGDLS 712 (779)
Q Consensus 668 pwI~n-gTIreNIlfG~~-------------------~d--------~~~y~~vl~ac~L~~-------di~~Lp~Gd~T 712 (779)
|+++. .|++|||.++.. .+ .+++.++++.++..+ -++.+ |..
T Consensus 77 ~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~- 153 (552)
T TIGR03719 77 PQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP- 153 (552)
T ss_pred CCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-
Confidence 99875 599999987521 11 123555666666432 12222 221
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
.......+||||||||++||||++++|+++||||||++||+++.+.+.+. +... ...++.|+|
T Consensus 154 ~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~~-~~tvIiisH 216 (552)
T TIGR03719 154 PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQEY-PGTVVAVTH 216 (552)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHhC-CCeEEEEeC
Confidence 12445678999999999999999999999999999999999999987653 3322 223444555
No 281
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.2e-28 Score=235.05 Aligned_cols=123 Identities=39% Similarity=0.612 Sum_probs=112.5
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEccccccCCCc-HHH
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGT-IRE 677 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI~ngT-Ire 677 (779)
|+ |+|++|++|++++|+|++|||||||+++|.|.+++.+| .|.++| .++|++|+++++.+. ++|
T Consensus 1 L~-~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LK-NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSG-SILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EE-EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEE-EEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CC-ceEEEEcCCCEEEEEccCCCccccceeeeccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 56 89999999999999999999999999999999999999 999987 389999999998877 999
Q ss_pred HhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 678 NIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
| .++++++++++.+++.+ ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 79 ~------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 44678888999887755 45678888999999999999999999999999999999996
No 282
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=5.3e-28 Score=254.33 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=117.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEcC---------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG--------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~g--------- 659 (779)
++++|+++.|+. .++++ ++||+|++|++++|+|++|||||||+++|.|.. +|++| +|.++|
T Consensus 2 i~~~nl~~~~~~------~~~l~-~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVED------KAILR-GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeCC------eeeee-cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCce-EEEECCCccccCCHH
Confidence 689999999964 46899 999999999999999999999999999999995 69999 999876
Q ss_pred -----eEEEEccccccCCC-cHHHHhccC-------CC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 -----KKAYVPQSSWIQTG-TIRENILFG-------KD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 -----~iayV~Q~pwI~ng-TIreNIlfG-------~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++|++|++.++.. |..+|+.+. .. .+ +++.++.++..+ +|+++.+... ..
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~--~~ 144 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLTRSV--NV 144 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcccCC--CC
Confidence 28999999987654 444443221 11 11 112222333332 3333333221 13
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||||||++||||++++|+|+||||||++||+.+.+.+.+
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~ 186 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD 186 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 799999999999999999999999999999999999887765
No 283
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=4e-28 Score=283.69 Aligned_cols=176 Identities=23% Similarity=0.352 Sum_probs=130.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~ 667 (779)
-|+++|++++|+. +.++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.+++ .++||+|+
T Consensus 6 ~l~i~~l~~~y~~-----~~~il~-~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G-~i~~~~~~~i~~v~Q~ 78 (556)
T PRK11819 6 IYTMNRVSKVVPP-----KKQILK-DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG-EARPAPGIKVGYLPQE 78 (556)
T ss_pred EEEEeeEEEEeCC-----CCeeee-CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEecC
Confidence 5899999999962 156899 99999999999999999999999999999999999999 998864 69999999
Q ss_pred cccCCC-cHHHHhccCCC-C----------------C-H------HHHHHH---HHHcc-------chHHHhhccCCCCc
Q 004004 668 SWIQTG-TIRENILFGKD-M----------------R-Q------SFYEEV---LEGCA-------LNQDIEMWADGDLS 712 (779)
Q Consensus 668 pwI~ng-TIreNIlfG~~-~----------------d-~------~~y~~v---l~ac~-------L~~di~~Lp~Gd~T 712 (779)
|++++. |++||+.++.. + . + .++.++ ++.++ +.+-++.+ |..
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~- 155 (556)
T PRK11819 79 PQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP- 155 (556)
T ss_pred CCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-
Confidence 998864 99999987621 0 0 0 001111 11111 01111111 111
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
....+..+||||||||++||||++++|+++|||||||+||+.+.+.+.+ ++... ...++-|+|
T Consensus 156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~-~L~~~-~~tviiisH 218 (556)
T PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ-FLHDY-PGTVVAVTH 218 (556)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH-HHHhC-CCeEEEEeC
Confidence 1233456899999999999999999999999999999999999988765 44432 223344444
No 284
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.1e-28 Score=281.13 Aligned_cols=153 Identities=23% Similarity=0.325 Sum_probs=127.4
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++++ |+||+|++||+++|+||+|||||||+++|.|+.+|.+| +|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~il~-~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFGP------VHALK-SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG-TITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcCC------eEEee-eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc-EEEECCEECCCCCHHH
Confidence 4899999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCC----------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~----------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.++||+|++-++. -|++||+.++.. .+ +++.+++++.++|.+.. ...-.+
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 145 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----------DEKVAN 145 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------ccchhh
Confidence 3899999998766 599999987631 01 12344455555553221 233458
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||||||++||||+.++|+++|||||||+||+.+.+.+.+
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 285
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=3.5e-28 Score=243.56 Aligned_cols=145 Identities=26% Similarity=0.397 Sum_probs=112.3
Q ss_pred EEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccC
Q 004004 592 DIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQ 671 (779)
Q Consensus 592 ~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ 671 (779)
+++|++++|+. .++++ ++||++++|++++|+||+|||||||+++|.|+++|.+| +|.++|.-- .+ .-
T Consensus 1 ~~~~l~~~~~~------~~~l~-~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G-~v~~~g~~~--~~---~~ 67 (180)
T cd03214 1 EVENLSVGYGG------RTVLD-DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG-EILLDGKDL--AS---LS 67 (180)
T ss_pred CeeEEEEEECC------eeeEe-eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEC--Cc---CC
Confidence 47899999964 46899 99999999999999999999999999999999999999 999988410 00 00
Q ss_pred CCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCc
Q 004004 672 TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (779)
Q Consensus 672 ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SAL 751 (779)
...++..|.+-. ++++.+++.+++. ..+.+||||||||++||||+.++|+++||||||++|
T Consensus 68 ~~~~~~~i~~~~--------q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 128 (180)
T cd03214 68 PKELARKIAYVP--------QALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128 (180)
T ss_pred HHHHHHHHhHHH--------HHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 011222222211 1777788876544 345789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhHHHH
Q 004004 752 DAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 752 Da~t~~~If~~~i~g~L~ 769 (779)
|+++.+.+.+ .+...-+
T Consensus 129 D~~~~~~~~~-~l~~~~~ 145 (180)
T cd03214 129 DIAHQIELLE-LLRRLAR 145 (180)
T ss_pred CHHHHHHHHH-HHHHHHH
Confidence 9999877654 4544433
No 286
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.95 E-value=6e-28 Score=252.30 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=115.1
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC------------eEEEEc-cccccC-CCc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVP-QSSWIQ-TGT 674 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------~iayV~-Q~pwI~-ngT 674 (779)
.++|+ |+||+|++||+++|+|++|||||||+++|.|.++|++| +|.++| .++|++ |++.++ +.|
T Consensus 34 ~~il~-~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 34 VEALK-GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred eeeee-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 46899 99999999999999999999999999999999999999 998876 378997 666664 689
Q ss_pred HHHHhccCCC---CCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 004004 675 IRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (779)
Q Consensus 675 IreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp 747 (779)
++||+.++.. .+++ +.+++++.+++.+.. ++ ...+||||||||++||||+.++|+++|||||
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999976432 2222 334455555554333 22 2357999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHH
Q 004004 748 FSAVDAHTGTHLFK 761 (779)
Q Consensus 748 ~SALDa~t~~~If~ 761 (779)
|++||+++.+.+.+
T Consensus 181 t~~LD~~~~~~l~~ 194 (236)
T cd03267 181 TIGLDVVAQENIRN 194 (236)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999998766
No 287
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.95 E-value=3.1e-28 Score=253.45 Aligned_cols=145 Identities=26% Similarity=0.331 Sum_probs=117.3
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC----CCCCeEEEcC-----------eEEEEccccc-cCC--C
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG-----------KKAYVPQSSW-IQT--G 673 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~----~~G~~I~i~g-----------~iayV~Q~pw-I~n--g 673 (779)
++ |+||+|++|++++|+||+|||||||+++|.|+++| .+| +|.++| .++|++|+|. .++ -
T Consensus 2 l~-~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 2 VQ-DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSG-EILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred cc-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcccc-EEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 56 99999999999999999999999999999999998 899 999877 4899999995 343 6
Q ss_pred cHHHHhccCC-----CC--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 674 TIRENILFGK-----DM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 674 TIreNIlfG~-----~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
|++||+.++. .. ++++++++++.+++.+ + .+.......+||||||||++||||++++|+++||||
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8999986532 11 1234667777777652 1 123345667899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhHH
Q 004004 747 PFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 747 p~SALDa~t~~~If~~~i~g~ 767 (779)
|||+||+.+.+.+.+ .+...
T Consensus 152 Pt~~LD~~~~~~l~~-~l~~~ 171 (230)
T TIGR02770 152 PTTDLDVVNQARVLK-LLREL 171 (230)
T ss_pred CccccCHHHHHHHHH-HHHHH
Confidence 999999999877654 44444
No 288
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=1e-27 Score=244.34 Aligned_cols=133 Identities=25% Similarity=0.301 Sum_probs=113.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc--ccCCCCCeEEEcC---------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG--------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe--~~~~~G~~I~i~g--------- 659 (779)
++++|++++|++ .++++ |+||++++||.++|+|++|||||||+++|.|+ ++|++| +|.++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G-~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGG------KEILK-GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG-EILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeCC------EEeee-ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc-EEEECCEECCcCCHH
Confidence 468999999964 46899 99999999999999999999999999999999 579999 999877
Q ss_pred -----eEEEEccccccCCCc-HHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQTGT-IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 -----~iayV~Q~pwI~ngT-IreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++|++|+|.+++++ +++|+ +. ...+||||||||++|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~lar 117 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQ 117 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHH
Confidence 289999999988754 44444 00 12479999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|+.++|+++||||||++||+.+.+.+++ ++...
T Consensus 118 al~~~p~illlDEPt~~LD~~~~~~l~~-~L~~~ 150 (200)
T cd03217 118 LLLLEPDLAILDEPDSGLDIDALRLVAE-VINKL 150 (200)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999887654 44443
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=1e-27 Score=236.40 Aligned_cols=123 Identities=28% Similarity=0.415 Sum_probs=98.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI 670 (779)
++++|++++|++ .++++ ++||++++||.++|+||+|||||||+++|.|+++|.+| +|.++|.- +.+
T Consensus 1 l~~~~l~~~~~~------~~vl~-~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~--~~~---- 66 (163)
T cd03216 1 LELRGITKRFGG------VKALD-GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKE--VSF---- 66 (163)
T ss_pred CEEEEEEEEECC------eEEEe-eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEE--CCc----
Confidence 468999999964 36899 99999999999999999999999999999999999999 99998741 000
Q ss_pred CCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 004004 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (779)
Q Consensus 671 ~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SA 750 (779)
.+.++ .+. ..+...|+ ||||||||++||||++++|+++||||||++
T Consensus 67 --~~~~~-----------~~~---------~~i~~~~q------------LS~G~~qrl~laral~~~p~illlDEP~~~ 112 (163)
T cd03216 67 --ASPRD-----------ARR---------AGIAMVYQ------------LSVGERQMVEIARALARNARLLILDEPTAA 112 (163)
T ss_pred --CCHHH-----------HHh---------cCeEEEEe------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 00000 000 00111111 999999999999999999999999999999
Q ss_pred cCHHHHHHHHH
Q 004004 751 VDAHTGTHLFK 761 (779)
Q Consensus 751 LDa~t~~~If~ 761 (779)
||+.+.+++.+
T Consensus 113 LD~~~~~~l~~ 123 (163)
T cd03216 113 LTPAEVERLFK 123 (163)
T ss_pred CCHHHHHHHHH
Confidence 99999988765
No 290
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=8.5e-28 Score=279.10 Aligned_cols=167 Identities=25% Similarity=0.348 Sum_probs=133.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEc----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVH---------- 658 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~---------- 658 (779)
|+++|++++|+. .++++ ++||++.+|++++|+||+|||||||+++|.|+. +|++| +|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G-~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLK-NISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG-RIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEECC------eEeee-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCce-EEEEecccccccccc
Confidence 468999999954 46899 999999999999999999999999999999996 69999 88875
Q ss_pred -------------C-----------------------eEEEEccc-cccCC-CcHHHHhccCCC---CC----HHHHHHH
Q 004004 659 -------------G-----------------------KKAYVPQS-SWIQT-GTIRENILFGKD---MR----QSFYEEV 693 (779)
Q Consensus 659 -------------g-----------------------~iayV~Q~-pwI~n-gTIreNIlfG~~---~d----~~~y~~v 693 (779)
| .++||+|+ +.++. -|++||+.|+.. ++ +++..++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 27999997 56655 699999987421 22 2456667
Q ss_pred HHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---
Q 004004 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--- 770 (779)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--- 770 (779)
++.++|.+..+ ..-.+||||||||++||||+..+|+++||||||++||+++.+.+.+ .+..+.++
T Consensus 153 l~~~gl~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~ 220 (520)
T TIGR03269 153 IEMVQLSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGI 220 (520)
T ss_pred HHHcCChhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCc
Confidence 77777754433 2346799999999999999999999999999999999999998875 34444443
Q ss_pred HHhHhcc
Q 004004 771 LLFSINH 777 (779)
Q Consensus 771 ~~~~~~~ 777 (779)
.++.|+|
T Consensus 221 tviivtH 227 (520)
T TIGR03269 221 SMVLTSH 227 (520)
T ss_pred EEEEEeC
Confidence 2445555
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9e-28 Score=283.86 Aligned_cols=176 Identities=20% Similarity=0.284 Sum_probs=135.1
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..++++|++++|+.. ....++++ |+||+|++||+++|+|++|||||||+++|.|+++|.+| +|.++|
T Consensus 11 ~~l~v~~l~~~y~~~--~~~~~~l~-~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G-~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 11 DVLAVENLNIAFMQE--QQKIAAVR-NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG-LVQCDKMLLRRRSRQ 86 (623)
T ss_pred ceEEEeceEEEecCC--CCceeEEE-eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe-EEEECCEEecccccc
Confidence 358999999999641 11246899 99999999999999999999999999999999999999 887654
Q ss_pred ------------------eEEEEcccc--ccC-CCcHHHHhccCCC----CCH----HHHHHHHHHccchHHHhhccCCC
Q 004004 660 ------------------KKAYVPQSS--WIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGD 710 (779)
Q Consensus 660 ------------------~iayV~Q~p--wI~-ngTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd 710 (779)
.++||+|+| -++ +-||+|||.++.. .+. ++..++++..+|.+.
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-------- 158 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA-------- 158 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------
Confidence 389999998 454 4699999987521 222 345566666666310
Q ss_pred CccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 711 ~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
.........+||||||||++||||+..+|+++||||||++||+.+.+.+.+ .+..+-++ .++.|+|
T Consensus 159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itH 227 (623)
T PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITH 227 (623)
T ss_pred hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcC
Confidence 011224456899999999999999999999999999999999999988776 34443322 2345555
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=282.79 Aligned_cols=175 Identities=22% Similarity=0.310 Sum_probs=136.7
Q ss_pred ccEEEeeeEEEeccccc-----cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDAREE-----NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~-----~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---- 659 (779)
..++++|+++.|+.... .....+++ ++||+|++||+++|+|++|||||||+++|+|..+|++| +|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~-~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVE-KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG-EIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEe-eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc-EEEECCEECC
Confidence 35899999999963100 00135799 99999999999999999999999999999999999999 999877
Q ss_pred ------------eEEEEccccc--cC-CCcHHHHhccCC---CC-C----HHHHHHHHHHccchH-HHhhccCCCCcccc
Q 004004 660 ------------KKAYVPQSSW--IQ-TGTIRENILFGK---DM-R----QSFYEEVLEGCALNQ-DIEMWADGDLSVVG 715 (779)
Q Consensus 660 ------------~iayV~Q~pw--I~-ngTIreNIlfG~---~~-d----~~~y~~vl~ac~L~~-di~~Lp~Gd~T~IG 715 (779)
.++||+|+|. ++ +-|++||+.++. .. + .++..++++.++|.+ ..+..|
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-------- 461 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP-------- 461 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc--------
Confidence 3899999984 44 579999997631 11 1 245667788888853 333333
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
..||||||||++||||+..+|+++|||||||+||..+.+.+.+ .+..+-++ .++.|+|
T Consensus 462 ---~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tvi~isH 522 (623)
T PRK10261 462 ---HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN-LLLDLQRDFGIAYLFISH 522 (623)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 5799999999999999999999999999999999999998875 34444333 2444555
No 293
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=240.30 Aligned_cols=160 Identities=28% Similarity=0.451 Sum_probs=134.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
-++++|++-.|.. ..+|+ ++||++++||+++++|++|+||||||++|.|..++.+| +|..+|.
T Consensus 3 mL~v~~l~~~YG~------~~~L~-gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G-~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGYGK------IQALR-GVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG-RIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecccc------eeEEe-eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEECCeecCCCCHHH
Confidence 3688999999975 57899 99999999999999999999999999999999999999 9999883
Q ss_pred -----EEEEccccccCC-CcHHHHhccCCCCCHH-HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 661 -----KAYVPQSSWIQT-GTIRENILFGKDMRQS-FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 661 -----iayV~Q~pwI~n-gTIreNIlfG~~~d~~-~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
++||||.-.+|. -||+||+..|....+. +..+ -.+++-.+.||. .......+|-+|||||+|-+||||
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHH
Confidence 899999999975 7999999987432221 1111 113344555663 334456789999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||.++|+++|||||+.+|-+...+.||+-
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~ 178 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHH
Confidence 99999999999999999999999999873
No 294
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=277.99 Aligned_cols=167 Identities=20% Similarity=0.334 Sum_probs=129.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSS 668 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~p 668 (779)
|+++|++++|+. .++++ ++||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++| +++|++|++
T Consensus 2 l~i~~ls~~~~~------~~il~-~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~~~~i~~~~q~~ 73 (530)
T PRK15064 2 LSTANITMQFGA------KPLFE-NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAG-NVSLDPNERLGKLRQDQ 73 (530)
T ss_pred EEEEEEEEEeCC------cEeEe-CCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEeccC
Confidence 689999999964 46899 99999999999999999999999999999999999999 999976 699999998
Q ss_pred ccCC-CcHHHHhccCCC-C--------------------------------------CHHHHHHHHHHccchHHHhhccC
Q 004004 669 WIQT-GTIRENILFGKD-M--------------------------------------RQSFYEEVLEGCALNQDIEMWAD 708 (779)
Q Consensus 669 wI~n-gTIreNIlfG~~-~--------------------------------------d~~~y~~vl~ac~L~~di~~Lp~ 708 (779)
-++. -|++||+.++.. + .+++.+++++..++.+..
T Consensus 74 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----- 148 (530)
T PRK15064 74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ----- 148 (530)
T ss_pred CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH-----
Confidence 7764 599999987531 0 011222333333332111
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 709 Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
-.....+||||||||++||||+..+|+++||||||++||+++.+.+.+- +.. ....++.|+|
T Consensus 149 -----~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~-~~~tiiivsH 210 (530)
T PRK15064 149 -----HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV-LNE-RNSTMIIISH 210 (530)
T ss_pred -----hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH-HHh-CCCeEEEEeC
Confidence 1123578999999999999999999999999999999999999887653 321 1223455555
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-27 Score=274.07 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=123.6
Q ss_pred EeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------
Q 004004 593 IEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------- 659 (779)
Q Consensus 593 ~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g------------- 659 (779)
++|++++|++ .++++ |+||++++|++++|+||+|||||||+++|.|+++|.+| +|.++|
T Consensus 1 ~~nl~~~~~~------~~il~-~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 1 MSNISKSFPG------VKALD-NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSG-SILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CCceEEEeCC------EEeee-eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCEECCCCCHHHHHh
Confidence 3688888864 46899 99999999999999999999999999999999999999 999877
Q ss_pred -eEEEEccccccC-CCcHHHHhccCCC------CCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 660 -KKAYVPQSSWIQ-TGTIRENILFGKD------MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 660 -~iayV~Q~pwI~-ngTIreNIlfG~~------~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
.++||+|++.++ +.|++||+.++.. .+++ +.+++++.+++. ........+|||||||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQ 141 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHH
Confidence 289999999765 4699999987631 1222 223334443332 2223456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|++||||+.++|+++||||||++||+.+.+.+.+-
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 176 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999888763
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=1.2e-27 Score=231.09 Aligned_cols=123 Identities=28% Similarity=0.446 Sum_probs=107.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSS 668 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~p 668 (779)
++++|+++.|++ .+.++ ++||++++||.++|+|++|||||||+++|.|+++|.+| +|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~------~~~l~-~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~~~i~~~~~-- 70 (144)
T cd03221 1 IELENLSKTYGG------KLLLK-DISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGSTVKIGYFEQ-- 70 (144)
T ss_pred CEEEEEEEEECC------ceEEE-eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCeEEEEEEcc--
Confidence 468999999964 36899 99999999999999999999999999999999999999 999998 5899999
Q ss_pred ccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 004004 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (779)
Q Consensus 669 wI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~ 748 (779)
||||||||++||||+.++|+++||||||
T Consensus 71 ----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 71 ----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 749 SAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 749 SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
++||+.+...+.+ .++.. +..+..++|
T Consensus 99 ~~LD~~~~~~l~~-~l~~~-~~til~~th 125 (144)
T cd03221 99 NHLDLESIEALEE-ALKEY-PGTVILVSH 125 (144)
T ss_pred cCCCHHHHHHHHH-HHHHc-CCEEEEEEC
Confidence 9999999887765 34432 233334444
No 297
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=3.2e-27 Score=266.19 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=131.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pw 669 (779)
.++++|++|+|+. ....++|+ ++||+|++|++++|+||+|||||||+++|+|+++|.+| +|.++|...++++.+.
T Consensus 21 mL~lknL~~~~~~---~~~~~IL~-nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~~i~~~~~ 95 (549)
T PRK13545 21 FDKLKDLFFRSKD---GEYHYALN-NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAALIAISSG 95 (549)
T ss_pred eeEEEEEEEecCC---CccceEEe-eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEeeeEEeccc
Confidence 5889999998875 32346899 99999999999999999999999999999999999999 9999998767666665
Q ss_pred cCC-CcHHHHhccCC---CCCHH----HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 670 IQT-GTIRENILFGK---DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 670 I~n-gTIreNIlfG~---~~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
+.. .|++|||.++. ..+++ +.+++++.+++.+.++. ....||||||||++||||+..+|++
T Consensus 96 l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHHHHHhCCCE
Confidence 544 69999997642 12332 34467777777665543 3568999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 742 YIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
+||||||++||+.+.+.+++. +..
T Consensus 165 LLLDEPTsgLD~~sr~~Llel-L~e 188 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDK-MNE 188 (549)
T ss_pred EEEECCcccCCHHHHHHHHHH-HHH
Confidence 999999999999998887653 443
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.95 E-value=1.5e-27 Score=247.09 Aligned_cols=133 Identities=31% Similarity=0.497 Sum_probs=111.7
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------EEEEcccccc---CCCcHHHHhccCCC--
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWI---QTGTIRENILFGKD-- 684 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------iayV~Q~pwI---~ngTIreNIlfG~~-- 684 (779)
|+|++||+++|+|++|||||||+++|.|.++|.+| +|.++|. ++|++|+|.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKG-TVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 56889999999999999999999999999999999 9999883 8999999876 46899999987521
Q ss_pred ---------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 004004 685 ---------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 685 ---------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t 755 (779)
.++++.+++++.+++.+..+ ....+||||||||++||||+.++|+++||||||++||+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11234566677777754332 2344699999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 004004 756 GTHLFKA 762 (779)
Q Consensus 756 ~~~If~~ 762 (779)
.+.+.+.
T Consensus 149 ~~~l~~~ 155 (223)
T TIGR03771 149 QELLTEL 155 (223)
T ss_pred HHHHHHH
Confidence 9987764
No 299
>PLN03211 ABC transporter G-25; Provisional
Probab=99.95 E-value=2.1e-27 Score=280.89 Aligned_cols=144 Identities=26% Similarity=0.458 Sum_probs=122.3
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC--CCCeEEEcCe---------EEEEccccccCC-CcHH
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHGK---------KAYVPQSSWIQT-GTIR 676 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~--~G~~I~i~g~---------iayV~Q~pwI~n-gTIr 676 (779)
+++|+ |+|+++++||++||+||+|||||||+++|.|..++. +| +|.++|. ++||+|++.++. .|++
T Consensus 81 ~~iL~-~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG-~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 81 RTILN-GVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTG-TILANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred Ceeee-CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EEEECCEECchhhccceEEECcccccCCcCCHH
Confidence 46899 999999999999999999999999999999999874 89 9999883 899999999985 6999
Q ss_pred HHhccCC------CCCHH----HHHHHHHHccchHHHhhccCCCCccccCC-CCCCChHHHHHHHHHHHHccCCCEEEEe
Q 004004 677 ENILFGK------DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFD 745 (779)
Q Consensus 677 eNIlfG~------~~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~-G~nLSGGQKQRIaLARAly~~adI~LLD 745 (779)
||+.|+. ..+++ +.+++++..+| ++..+|.||++ +..||||||||++||||+.++|+|++||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 9998752 22322 23444554444 34558889875 6789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHH
Q 004004 746 DPFSAVDAHTGTHLFK 761 (779)
Q Consensus 746 Dp~SALDa~t~~~If~ 761 (779)
||||+||+.++.++.+
T Consensus 232 EPtsgLD~~~~~~l~~ 247 (659)
T PLN03211 232 EPTSGLDATAAYRLVL 247 (659)
T ss_pred CCCCCcCHHHHHHHHH
Confidence 9999999999998766
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=2.7e-27 Score=273.08 Aligned_cols=152 Identities=24% Similarity=0.331 Sum_probs=129.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
++++|++++|+. .++|+ ++||+|++|++++|+||+|||||||+++|.|+++|.+| +|.++|.
T Consensus 4 l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G-~i~~~~~~~~~~~~~~~ 75 (490)
T PRK10938 4 LQISQGTFRLSD------TKTLQ-LPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-ERQSQFSHITRLSFEQL 75 (490)
T ss_pred EEEEeEEEEcCC------eeecc-cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-eEEECCcccccCCHHHH
Confidence 789999999964 35899 99999999999999999999999999999999999999 9988651
Q ss_pred ---EEEEcccccc---------CCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 661 ---KAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 661 ---iayV~Q~pwI---------~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
++|++|++-+ +..|++||+.++.+ ++++.+++++..+|.+..+. ....||||||||
T Consensus 76 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qr 143 (490)
T PRK10938 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDR-----------RFKYLSTGETRK 143 (490)
T ss_pred HHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHH
Confidence 7899998753 25699999987632 34667788888887654332 346899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
++||||+..+|+++||||||++||+.+.+.+.+-
T Consensus 144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 177 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAEL 177 (490)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 9999999999999999999999999999887763
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=274.30 Aligned_cols=169 Identities=22% Similarity=0.307 Sum_probs=137.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q 666 (779)
..++++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|.|.++|.+| +|.++| .++|++|
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~-~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~~~i~~~~q 389 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFK-NLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSENANIGYYAQ 389 (530)
T ss_pred ceEEEEeeEEeeCC------ceeec-CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCceEEEEEcc
Confidence 46999999999964 46899 99999999999999999999999999999999999999 999987 6999999
Q ss_pred ccc--cC-CCcHHHHhccCC--CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 667 SSW--IQ-TGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 667 ~pw--I~-ngTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
++. ++ +.|++||+.+.. ..++++.+++++..++..+.. .....+||||||||++||||+.++|++
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~qrv~la~al~~~p~l 459 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI----------KKSVKVLSGGEKGRMLFGKLMMQKPNV 459 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh----------cCcccccCHHHHHHHHHHHHHhcCCCE
Confidence 974 33 479999996421 234556777888887743221 234578999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 742 YIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
+||||||++||+.+.+.+.+. ++.. ...++.|+|
T Consensus 460 llLDEPt~~LD~~~~~~l~~~-l~~~-~~tvi~vsH 493 (530)
T PRK15064 460 LVMDEPTNHMDMESIESLNMA-LEKY-EGTLIFVSH 493 (530)
T ss_pred EEEcCCCCCCCHHHHHHHHHH-HHHC-CCEEEEEeC
Confidence 999999999999999887663 3322 223444555
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=2.2e-27 Score=275.67 Aligned_cols=178 Identities=17% Similarity=0.275 Sum_probs=134.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc-C---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G--------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~-g--------- 659 (779)
.++++|++++|+... ....++++ |+||+|++|++++|+||+|||||||+++|.|..+|++| +|.++ |
T Consensus 279 ~l~~~~l~~~~~~~~-~~~~~il~-~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVD-RGVVKAVD-NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG-EVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCC-CCCceEEe-eEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEEecCCcccccccc
Confidence 599999999995200 11246899 99999999999999999999999999999999999999 99884 3
Q ss_pred ----------eEEEEccccccCC-CcHHHHhccCC--CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ----------KKAYVPQSSWIQT-GTIRENILFGK--DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ----------~iayV~Q~pwI~n-gTIreNIlfG~--~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
+++|++|++.++. .|++||+.++. ..+ +++.+++++.++|.+.- + +.........||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~---~~~~~~~~~~LS 429 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK---A---EEILDKYPDELS 429 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc---c---hhhhhCChhhCC
Confidence 2799999988776 59999997531 111 23445566666664200 0 001123456799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||||++||||+..+|+++||||||++||+++.+.+.+. +..+.++ .++.|+|
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vsH 486 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS-ILKAREEMEQTFIIVSH 486 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCcEEEEEeC
Confidence 9999999999999999999999999999999999887653 4444333 2455555
No 303
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.94 E-value=5.1e-27 Score=247.09 Aligned_cols=142 Identities=26% Similarity=0.410 Sum_probs=117.4
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEccccc-cCCCcHH
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW-IQTGTIR 676 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~pw-I~ngTIr 676 (779)
.|+ ++||+|++|+.++|+|++|||||||+++|.|.+++ +| +|.++|. ++|++|++. .++.|++
T Consensus 11 ~l~-~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLG-PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SG-SIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eec-ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-Ce-EEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 588 99999999999999999999999999999999865 89 9998872 799999974 5678999
Q ss_pred HHhccCCCC--C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc-------CCCEEE
Q 004004 677 ENILFGKDM--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYI 743 (779)
Q Consensus 677 eNIlfG~~~--d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~-------~adI~L 743 (779)
||+.++.+. + +++.+++++..+|.+.++ .....||||||||++||||+.+ +|+++|
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 999986432 1 235567777777754433 3456899999999999999998 779999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 744 FDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 744 LDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||++||+.+.+.+.+ .+...
T Consensus 157 lDEPt~~LD~~~~~~l~~-~L~~~ 179 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDR-LLSEL 179 (248)
T ss_pred EcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999998887664 44443
No 304
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=5.7e-27 Score=272.72 Aligned_cols=175 Identities=26% Similarity=0.381 Sum_probs=133.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
-++++|++++|+.. ....++++ ++||+|++||+++|+||+|||||||+++|.|.++| ++| +|.++|
T Consensus 5 ~l~~~~l~~~~~~~--~~~~~~l~-~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ--QTVRTVVN-DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSG-DIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC--CCceeeee-ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccce-EEEECCEeccc
Confidence 48999999999631 11246899 99999999999999999999999999999999986 699 998765
Q ss_pred ------------eEEEEccccc--cC-CCcHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccC
Q 004004 660 ------------KKAYVPQSSW--IQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (779)
Q Consensus 660 ------------~iayV~Q~pw--I~-ngTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE 716 (779)
.++|++|+|. ++ .-|++||+.++. ..+ +++.+++++.++|.+..+. ...
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--------~~~ 152 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--------LTD 152 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------Hhh
Confidence 3899999985 33 368999986421 111 2455677777777531111 123
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
...+||||||||++||||++.+|+++|||||||+||+++.+.+.+ .+..+-++ .++.|+|
T Consensus 153 ~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtH 215 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITH 215 (529)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcC
Confidence 456899999999999999999999999999999999999988775 34443222 2445555
No 305
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.94 E-value=7.7e-27 Score=272.76 Aligned_cols=169 Identities=28% Similarity=0.344 Sum_probs=133.6
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q 666 (779)
..++++|++++|++ .++++ |+||+|++|++++|+||+|||||||+++|.|..+|.+| +|.+++ +++|++|
T Consensus 321 ~~l~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~~~~~i~~v~q 392 (552)
T TIGR03719 321 KVIEAENLSKGFGD------KLLID-DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGETVKLAYVDQ 392 (552)
T ss_pred eEEEEeeEEEEECC------eeeec-cceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEECCceEEEEEeC
Confidence 45999999999964 46899 99999999999999999999999999999999999999 999865 5999999
Q ss_pred ccc-cC-CCcHHHHhccCCCC---C--HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 667 SSW-IQ-TGTIRENILFGKDM---R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 667 ~pw-I~-ngTIreNIlfG~~~---d--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
++- ++ +.|++||+.++.+. + +.+.+++++..++.++. ......+||||||||++||||+..+|
T Consensus 393 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p 462 (552)
T TIGR03719 393 SRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGG 462 (552)
T ss_pred CccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCC
Confidence 973 44 56999999886431 1 23344556666654321 12334679999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 740 DVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
+++||||||++||+.+.+.+.+ .+... ...++.|+|
T Consensus 463 ~lllLDEPt~~LD~~~~~~l~~-~l~~~-~~~viivsH 498 (552)
T TIGR03719 463 NVLLLDEPTNDLDVETLRALEE-ALLEF-AGCAVVISH 498 (552)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHC-CCeEEEEeC
Confidence 9999999999999999988765 23322 123445555
No 306
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.94 E-value=1.7e-27 Score=244.95 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=117.8
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-EcCeEEEEccccccCCC-cHHHHhccCC---CC
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTG-TIRENILFGK---DM 685 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-i~g~iayV~Q~pwI~ng-TIreNIlfG~---~~ 685 (779)
+++ |+||+|++|++++|+||+|||||||+++|+|+++|.+| +|. ++|....+.|++.++.. |++|||.+.. ..
T Consensus 2 vl~-~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG-~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 2 VLD-KTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG-DFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred eee-eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC-CEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 477 99999999999999999999999999999999999999 886 78865567778888875 9999997642 23
Q ss_pred CHHHHHHHH-HHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 686 RQSFYEEVL-EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 686 d~~~y~~vl-~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
+.++..+.+ +.. .+++..++.+ ..||||||||++||||+..+|+++|||||++++|+++.+.+.+...
T Consensus 80 ~~~~~~~~~~~~~-------~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 80 DGDEFSHFCYQLT-------QLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred CHHHHHHHHHHHh-------ChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH
Confidence 344333322 222 2344444444 4599999999999999999999999999999999999888766433
Q ss_pred hHHHHHHHhHhcc
Q 004004 765 FSLFHQLLFSINH 777 (779)
Q Consensus 765 ~g~L~~~~~~~~~ 777 (779)
...-.+.++.++|
T Consensus 149 ~~~~~~~ii~vsH 161 (213)
T PRK15177 149 CQLQQKGLIVLTH 161 (213)
T ss_pred HHhhCCcEEEEEC
Confidence 3221223444555
No 307
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=5.6e-27 Score=272.76 Aligned_cols=173 Identities=25% Similarity=0.327 Sum_probs=133.8
Q ss_pred cEEEeeeEEEeccccc-----cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREE-----NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~-----~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----- 659 (779)
.++++|++++|+...+ ..+.++++ ++||+|++|++++|+||+|||||||+++|.|.++ .+| +|.++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~-~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G-~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVK-NISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQG-EIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeee-cceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCc-EEEECCEEccc
Confidence 5899999999962100 01246899 9999999999999999999999999999999986 899 999877
Q ss_pred -----------eEEEEcccc--ccC-CCcHHHHhccCCC-----CC----HHHHHHHHHHccchHH-HhhccCCCCcccc
Q 004004 660 -----------KKAYVPQSS--WIQ-TGTIRENILFGKD-----MR----QSFYEEVLEGCALNQD-IEMWADGDLSVVG 715 (779)
Q Consensus 660 -----------~iayV~Q~p--wI~-ngTIreNIlfG~~-----~d----~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IG 715 (779)
.++||+|++ .++ +.|++||+.++.. .+ +++.+++++..+|.++ .+
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------- 420 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH----------- 420 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-----------
Confidence 279999998 254 4699999987521 22 2345566676666532 22
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
....+||||||||++||||+..+|+++|||||||+||+++.+.+++ .+..+.++ .++.|+|
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsH 484 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA-LLKSLQQKHQLAYLFISH 484 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHH-HHHHHHHhhCCEEEEEeC
Confidence 2346799999999999999999999999999999999999988875 34444332 2445555
No 308
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-27 Score=272.20 Aligned_cols=172 Identities=22% Similarity=0.344 Sum_probs=131.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-CCCCCeEEEcCe--------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHGK-------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-~~~G~~I~i~g~-------- 660 (779)
.++++|++++|+. ..+.++++ |+||+|++|++++|+|++|||||||+++|.|.++ |.+| +|.++|.
T Consensus 259 ~l~~~~l~~~~~~---~~~~~vl~-~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G-~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV---NPHIKRVD-DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG-EIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc---cccccccc-ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCc-EEEECCEECCCCCHH
Confidence 5899999999852 11246899 9999999999999999999999999999999998 5999 9998762
Q ss_pred ------EEEEcccc---ccC-CCcHHHHhccCC--C------CCH----HHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 661 ------KAYVPQSS---WIQ-TGTIRENILFGK--D------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 661 ------iayV~Q~p---wI~-ngTIreNIlfG~--~------~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
++|++|++ .++ +.|+.||+.++. . .++ ++.+++++.+++..+ ......
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 403 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELAI 403 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------Cccccc
Confidence 89999996 354 579999998752 1 121 234455555555311 122345
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
..||||||||++||||+..+|+++|||||||+||+.+.+.+++ .+..+.++ .++.|+|
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sH 463 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISS 463 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECC
Confidence 6899999999999999999999999999999999999988765 34443332 2344444
No 309
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=5.3e-27 Score=223.61 Aligned_cols=160 Identities=28% Similarity=0.387 Sum_probs=134.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|++++++..-+.. ..+-++|+ +++|.|++||.+|||||||||||||+..+.|.-+|++| +|.+-|
T Consensus 6 ii~~~~l~ktvg~~--~~~l~IL~-~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG--EGELSILK-GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC--CcceeEee-cceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHH
Confidence 46777776665542 22346899 99999999999999999999999999999999999999 999876
Q ss_pred -------eEEEEccccc-cCCCcHHHHhccCCCC-------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------KKAYVPQSSW-IQTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------~iayV~Q~pw-I~ngTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
++++|+|+-. |.|-|--||+....+. ..+.-++-+++.+|.+-+...| ..||||
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGG 150 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGG 150 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCch
Confidence 4999999988 5889999999764321 1234567888899988777776 579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
++||+|||||+...|+|++=||||-+||..|+++|-+-.+
T Consensus 151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF 190 (228)
T COG4181 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190 (228)
T ss_pred HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999866433
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=9.2e-27 Score=272.26 Aligned_cols=155 Identities=27% Similarity=0.354 Sum_probs=128.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q 666 (779)
..++++|+++.|++ .++++ |+||+|++|++++|+||+|||||||+++|.|..+|.+| +|.+++ .++|++|
T Consensus 323 ~~l~~~~l~~~~~~------~~~l~-~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~~~i~~v~q 394 (556)
T PRK11819 323 KVIEAENLSKSFGD------RLLID-DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG-TIKIGETVKLAYVDQ 394 (556)
T ss_pred eEEEEEeEEEEECC------eeeec-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCceEEEEEeC
Confidence 46999999999964 46899 99999999999999999999999999999999999999 999966 5999999
Q ss_pred cc-ccC-CCcHHHHhccCCCC-----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 667 SS-WIQ-TGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 667 ~p-wI~-ngTIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
++ .++ +-|++||+.++... ++++.+++++..++.++. .......||||||||++||||+..+|
T Consensus 395 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p 464 (556)
T PRK11819 395 SRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGG 464 (556)
T ss_pred chhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 97 454 46999999876421 133344555655553221 12234579999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHH
Q 004004 740 DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If~ 761 (779)
+++||||||++||+.+...+.+
T Consensus 465 ~lllLDEPt~~LD~~~~~~l~~ 486 (556)
T PRK11819 465 NVLLLDEPTNDLDVETLRALEE 486 (556)
T ss_pred CEEEEcCCCCCCCHHHHHHHHH
Confidence 9999999999999999988765
No 311
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.4e-27 Score=271.77 Aligned_cols=152 Identities=22% Similarity=0.404 Sum_probs=121.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|+++.|. .+++ |+||+|++|++++|+||+|||||||+++|.|..+|++| +|.++|
T Consensus 265 ~l~~~~l~~~~~--------~~l~-~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRDR--------KKVR-DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG-EIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccCC--------Cccc-ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCEECCCCCHHH
Confidence 589999998642 2689 99999999999999999999999999999999999999 999876
Q ss_pred ----eEEEEcccc---ccC-CCcHHHHhccCCCC------------CH----HHHHHHHHHccchHHHhhccCCCCcccc
Q 004004 660 ----KKAYVPQSS---WIQ-TGTIRENILFGKDM------------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (779)
Q Consensus 660 ----~iayV~Q~p---wI~-ngTIreNIlfG~~~------------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 715 (779)
.++||+|++ -++ +-|++||+.++... ++ ++.+++++..++.. + ...
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~ 404 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------H----SVN 404 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------C----Ccc
Confidence 279999984 344 56999999876321 11 12233444443321 1 122
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..-..||||||||++||||+..+|+|+|||||||+||..+.+.+.+
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 3345799999999999999999999999999999999999988765
No 312
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=1.5e-26 Score=293.08 Aligned_cols=161 Identities=23% Similarity=0.377 Sum_probs=135.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc---CCCCCeEEEcCe------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHGK------ 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~---~~~G~~I~i~g~------ 660 (779)
.++++|++++++.. ..++++|+ |+|+++++||++||+||+|||||||+++|.|..+ +++| +|.++|.
T Consensus 759 ~l~~~nl~~~~~~~--~~~~~iL~-~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G-~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK--KEKRVILN-NVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGG-DRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC--CCCcEeee-CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECChhh
Confidence 47899999999631 12356899 9999999999999999999999999999999987 6789 9999983
Q ss_pred ---EEEEccccc-cCCCcHHHHhccCC------CCCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 661 ---KAYVPQSSW-IQTGTIRENILFGK------DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 661 ---iayV~Q~pw-I~ngTIreNIlfG~------~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
++||+|++. +.+.|+|||+.|+. ..++ ++.+++++..+|.+ -.++.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 799999864 67789999999752 2222 23466777776643 358899999999999999
Q ss_pred HHHHHHHHHccCCC-EEEEeCCCCCcCHHHHHHHHH
Q 004004 727 QRIQLARAVYSNSD-VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 727 QRIaLARAly~~ad-I~LLDDp~SALDa~t~~~If~ 761 (779)
||++||||+.++|+ |++||||||+||++++.+|.+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~ 943 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK 943 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence 99999999999997 999999999999999988765
No 313
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=5.4e-27 Score=271.21 Aligned_cols=157 Identities=20% Similarity=0.324 Sum_probs=124.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEEcC---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG--------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i~g--------- 659 (779)
.++++|++++|+. +.+.++++ ++||+|++||+++|+||+|||||||+++|.|..+| .+| +|.++|
T Consensus 257 ~l~~~~l~~~~~~---~~~~~~l~-~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G-~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 257 ILEARNLTCWDVI---NPHRKRVD-DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEG-NVFINGKPVDIRNPA 331 (500)
T ss_pred eEEEeCCcccccc---cccccccc-cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCe-EEEECCEECCCCCHH
Confidence 5899999998842 11245899 99999999999999999999999999999999985 899 999876
Q ss_pred -----eEEEEcccc----ccCCCcHHHHhccCCC--------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 -----KKAYVPQSS----WIQTGTIRENILFGKD--------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 -----~iayV~Q~p----wI~ngTIreNIlfG~~--------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
+++||+|++ ...+.|++||+.++.. .+ +++.+++++.+++.++ ......
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 401 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPI 401 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCcc
Confidence 279999996 3445799999988521 11 1234455555554211 112234
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||||||||++||||+..+|+++||||||++||..+.+.+++
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 444 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH
Confidence 5799999999999999999999999999999999999988775
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=1.4e-26 Score=270.67 Aligned_cols=168 Identities=18% Similarity=0.320 Sum_probs=137.5
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..++++|++++|++ ..|+ ++|++|++||.++|+||+|||||||+++|.|+.+|.+| +|.++-+++|+||++
T Consensus 339 ~~l~~~~ls~~~~~-------~~l~-~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G-~I~~~~~i~y~~Q~~ 409 (590)
T PRK13409 339 TLVEYPDLTKKLGD-------FSLE-VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-EVDPELKISYKPQYI 409 (590)
T ss_pred eEEEEcceEEEECC-------EEEE-ecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEEeeeEEEecccc
Confidence 45899999999964 2488 99999999999999999999999999999999999999 998887899999997
Q ss_pred cc-CCCcHHHHhccCC-CCC-HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 004004 669 WI-QTGTIRENILFGK-DMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (779)
Q Consensus 669 wI-~ngTIreNIlfG~-~~d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLD 745 (779)
-. ++.|++||+.++. .++ +...+++++..+|.+..+ ..-.+||||||||++||||+.++|++||||
T Consensus 410 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLD 478 (590)
T PRK13409 410 KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLD 478 (590)
T ss_pred cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 64 6789999998763 222 345577888888864433 234579999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 746 DPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 746 Dp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||++||..+...+.+ .++.+.++ .++.|+|
T Consensus 479 EPt~~LD~~~~~~l~~-~l~~l~~~~g~tviivsH 512 (590)
T PRK13409 479 EPSAHLDVEQRLAVAK-AIRRIAEEREATALVVDH 512 (590)
T ss_pred CCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeC
Confidence 9999999999888765 44444332 2444555
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=1.7e-26 Score=230.10 Aligned_cols=123 Identities=21% Similarity=0.327 Sum_probs=104.8
Q ss_pred eeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-eEEEEccccccCC
Q 004004 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQT 672 (779)
Q Consensus 594 ~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-~iayV~Q~pwI~n 672 (779)
+|++++|++ .++++ + ++++++||+++|+||+|||||||+++|.|+++|++| +|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~------~~~l~-~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGV------FFLLV-E-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGITPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECC------EEEEc-c-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCEEEEEEcccCC---
Confidence 577888854 35677 7 599999999999999999999999999999999999 999998 5899999753
Q ss_pred CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 004004 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (779)
Q Consensus 673 gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALD 752 (779)
||||||||++||||+.++|++++|||||++||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 753 AHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 753 a~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
+++.+.+.+ .+....++ .++.++|
T Consensus 104 ~~~~~~l~~-~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 104 IEQRLNAAR-AIRRLSEEGKKTALVVEH 130 (177)
T ss_pred HHHHHHHHH-HHHHHHHcCCCEEEEEEC
Confidence 999987765 34444332 2445555
No 316
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=266.31 Aligned_cols=165 Identities=18% Similarity=0.325 Sum_probs=126.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|+++ ..+++ |+||+|++||+++|+||+|||||||+++|+|+.+|.+| +|.++|
T Consensus 257 ~l~~~~~~~----------~~~l~-~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG----------PGLRE-PISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG-QVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc----------CCccc-ceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCc-eEEECCEECCCCCHHH
Confidence 578888863 13688 99999999999999999999999999999999999999 999876
Q ss_pred ----eEEEEcccc----ccCCCcHHHHhccCCC-C--------C----HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ----KKAYVPQSS----WIQTGTIRENILFGKD-M--------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ----~iayV~Q~p----wI~ngTIreNIlfG~~-~--------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++|++|+| ...+.|+.||+.++.. . + +++.++.++.+++.++ ......
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 394 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTP----------SREQLI 394 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccC----------CccCcc
Confidence 278999997 4455899999987531 0 1 1234445555554211 112334
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
.+||||||||++||||+..+|+++||||||++||..+.+.+.+ ++..+.++ -++.++|
T Consensus 395 ~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsH 454 (501)
T PRK11288 395 MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSS 454 (501)
T ss_pred ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECC
Confidence 5899999999999999999999999999999999999988765 44443322 3444444
No 317
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.94 E-value=6.7e-23 Score=223.64 Aligned_cols=418 Identities=18% Similarity=0.215 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---ChHHHH---HHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004004 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIII---NMINVDVERIGDFFLYIHRIWLLPV-QVFLALV 407 (779)
Q Consensus 335 ~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~---~sG~iv---nlms~Dv~~i~~~~~~~~~~~~~pl-~i~~~l~ 407 (779)
+..-.|...+++..+|..|+...|++-+.-....+ ..|.+- |.++.|+..+.+....+..-.+-|+ .+++..+
T Consensus 174 NS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~ 253 (728)
T KOG0064|consen 174 NSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISF 253 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33344556789999999999999998775432111 233322 4588899888887766555445553 4555555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHhchHHHHHhchHHHHHHHHHH
Q 004004 408 ILYKNLGAAPAFAALFSTIFVMVSNTPLANR-QERFHSMIMEAKDAR----IKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (779)
Q Consensus 408 lL~~~lg~~~~l~~l~~~ll~~~~~~~~~k~-~~~~~~~~~~~~d~R----~~~~~E~L~~ir~IK~~~wE~~f~~~i~~ 482 (779)
.|....+ .....+.....+.+.+...+-|. .-++.+-.+ ....| -..=+.+++|-..|-+|+-.+.-.+++++
T Consensus 254 ~L~~s~~-s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~-eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~ 331 (728)
T KOG0064|consen 254 TLLDSAT-SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVA-EEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDE 331 (728)
T ss_pred HHHhhhc-cccccchhhhhhHHHHHHHHHHHhCCchhhHHH-HHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHH
Confidence 4543322 11111111111111122211111 112222111 12222 23457888999999999987766666655
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHhcCC--c-----C-HHHHHHHHHHHHHHHHH
Q 004004 483 LREIERDS----LKKYLYTCSAIAFL---FWASPTLVS--VITFGVCILLKTP--L-----T-SGAVLSALATFRILQEP 545 (779)
Q Consensus 483 ~R~~E~~~----l~~~~~~~~~~~~~---~~~~p~lv~--~~~f~~~~l~~~~--L-----t-~g~vft~lal~~~l~~p 545 (779)
..+.-... .++.......-.++ .|+..-++. +=.+..-...+++ + + .....|.=.++-...+.
T Consensus 332 sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdA 411 (728)
T KOG0064|consen 332 SYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADA 411 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 43221111 11111111111111 111110000 0000000001111 1 1 11222333444455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-ccC-------------CCCCC--C----CCCCC-----CCccEEEeeeEEEe
Q 004004 546 IYNLPELISMIAQTKVSLYRIQEFIKE-DNQ-------------KKPIT--E----PTSKA-----SDVAIDIEAGEYAW 600 (779)
Q Consensus 546 l~~lp~~i~~~~~a~vS~~RI~~fL~~-~e~-------------~~~~~--~----~~~~~-----~~~~I~~~n~sFsw 600 (779)
+..+...+..+.|-...-.|+.+.++- ++. .+... + .+.+. ....|.++|+-.--
T Consensus 412 ieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvIt 491 (728)
T KOG0064|consen 412 IERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVIT 491 (728)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceec
Confidence 888888888899988888898865531 110 00000 0 00000 11246667765544
Q ss_pred ccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc--CeEEEEccccccCCCcHHHH
Q 004004 601 DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIREN 678 (779)
Q Consensus 601 ~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~--g~iayV~Q~pwI~ngTIreN 678 (779)
|. .+-+.. ++||+|++|..+.|.||+|||||||.+.|-|.+|...| ...+. .++-|+||.|+.=-||.||-
T Consensus 492 P~-----~~vvv~-~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g-~L~~P~~~~mFYIPQRPYms~gtlRDQ 564 (728)
T KOG0064|consen 492 PA-----GDVLVP-KLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG-LLSIPRPNNIFYIPQRPYMSGGTLRDQ 564 (728)
T ss_pred cC-----cceeec-ceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCC-eeecCCCcceEeccCCCccCcCcccce
Confidence 33 233555 89999999999999999999999999999999999999 77764 46999999999999999999
Q ss_pred hccCC--------CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 004004 679 ILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (779)
Q Consensus 679 IlfG~--------~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SA 750 (779)
|.+.. .+.|+..+++++...|+.-++ -..|.+. +-+----||||+|||++.||..|.+|.--+|||+|||
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsA 642 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSA 642 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcc
Confidence 99863 366788899999998876444 3555443 3344557999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 004004 751 VDAHTGTHLFKAR 763 (779)
Q Consensus 751 LDa~t~~~If~~~ 763 (779)
|-.++|..||+..
T Consensus 643 vsidvE~~i~~~a 655 (728)
T KOG0064|consen 643 VSIDVEGKIFQAA 655 (728)
T ss_pred cccchHHHHHHHH
Confidence 9999999999853
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=2.1e-26 Score=265.71 Aligned_cols=170 Identities=23% Similarity=0.379 Sum_probs=132.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEEcC--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG-------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i~g-------- 659 (779)
..++++|++++|++ ..+++ ++||+|++||+++|+||+|||||||+++|.|+.++ .+| +|.++|
T Consensus 259 ~~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G-~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSYND------RPILH-NLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN-DLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEECC------eeEEe-eceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC-eEEEecccCCCCCC
Confidence 46999999999964 35899 99999999999999999999999999999998876 699 998876
Q ss_pred ------eEEEEccccccC---CCcHHHHhccCC--------CCC---HHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 ------KKAYVPQSSWIQ---TGTIRENILFGK--------DMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 ------~iayV~Q~pwI~---ngTIreNIlfG~--------~~d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++|++|++.++ ..|++||+.++. ..+ +++.+++++.++|.++.. .....
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~ 400 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA----------DAPFH 400 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc----------cCchh
Confidence 289999998653 247888776431 011 235667777777754221 12346
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--H-HhHhcc
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--L-LFSINH 777 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~-~~~~~~ 777 (779)
.||||||||++||||+..+|+++||||||++||+++.+.+.+ .+...-++ . ++.|+|
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsH 460 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSH 460 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEec
Confidence 899999999999999999999999999999999999988775 34333332 1 345555
No 319
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.8e-26 Score=235.45 Aligned_cols=134 Identities=24% Similarity=0.448 Sum_probs=122.8
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------------eEEEEccccccCC-CcHH
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT-GTIR 676 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-----------------~iayV~Q~pwI~n-gTIr 676 (779)
++||+.+.--.+|+-|+||||||||+++|.|...|.+| .|.++| +|+||+||+-+|. -|||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG-~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcccc-EEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 57888887679999999999999999999999999999 999998 4899999999974 8999
Q ss_pred HHhccCCCC-CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 004004 677 ENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 677 eNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t 755 (779)
-|+.||... +.+.+++++..-+++.-++..| .+||||+|||+||+|||+.+|+++|+|||+|+||-..
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999999865 4678899999999999999888 5899999999999999999999999999999999988
Q ss_pred HHHHH
Q 004004 756 GTHLF 760 (779)
Q Consensus 756 ~~~If 760 (779)
.+.|.
T Consensus 164 K~Eil 168 (352)
T COG4148 164 KREIL 168 (352)
T ss_pred hhHHH
Confidence 87754
No 320
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.6e-26 Score=239.52 Aligned_cols=153 Identities=29% Similarity=0.413 Sum_probs=131.8
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------------eEEEEcccccc-CCC
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWI-QTG 673 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-----------------~iayV~Q~pwI-~ng 673 (779)
++ |+||+|+.||+..|-|-||||||||++++-|.++|++| +|.++| +++.|+|+--| .+-
T Consensus 44 v~-~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G-~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VN-DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG-EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred ec-cceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc-eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 66 89999999999999999999999999999999999999 999988 48999999876 579
Q ss_pred cHHHHhccCCCC----CH---HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 674 TIRENILFGKDM----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 674 TIreNIlfG~~~----d~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
||-||..||.+. .+ ++-.++++..+|+..=...| ..||||+|||+.||||+..||||+|+||
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 999999999764 23 34556777788887766666 4799999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHH--hHHHHHHHhHhcc
Q 004004 747 PFSAVDAHTGTHLFKART--FSLFHQLLFSINH 777 (779)
Q Consensus 747 p~SALDa~t~~~If~~~i--~g~L~~~~~~~~~ 777 (779)
||||||+--.+.+-++.+ ..-|++-++=|+|
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitH 223 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 999999999988888766 3556665666666
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=3.4e-26 Score=241.42 Aligned_cols=149 Identities=20% Similarity=0.273 Sum_probs=119.4
Q ss_pred eeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-----------EcC---
Q 004004 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG--- 659 (779)
Q Consensus 594 ~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-----------i~g--- 659 (779)
.|++++|++ ..+.++ |++ .+++|++++|+||+|||||||+++|+|.++|++| +|. ++|
T Consensus 4 ~~~~~~y~~-----~~~~l~-~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G-~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 4 DEPVHRYGP-----NSFKLH-RLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG-KFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred cCcceeecC-----cchhhh-cCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEeeccccchhhhhccCchh
Confidence 367888864 235789 999 4999999999999999999999999999999999 885 444
Q ss_pred ------------eEEEEccccccCCCcHHHHhccCC-C-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 ------------KKAYVPQSSWIQTGTIRENILFGK-D-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 ------------~iayV~Q~pwI~ngTIreNIlfG~-~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++|++|.+.++..++.+||.+.- . -++++.+++++.+++.+. ...+..+|||||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~ 144 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGE 144 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHH
Confidence 257888887777666666655431 1 124567777777776543 334567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||++||||++++|+++|||||||+||+.+.+.+++
T Consensus 145 ~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~ 180 (255)
T cd03236 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180 (255)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999987764
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=5.4e-26 Score=270.41 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=129.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q 666 (779)
..++++|++++|++ ..++++ |+||+|++|++++|+||+|||||||+++|.|+.+|++| +|.+++ .++|++|
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~-~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G-~I~~~~~~~igyv~Q 579 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFK-NLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG-TVFRSAKVRMAVFSQ 579 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEe-ccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-eEEECCceeEEEEec
Confidence 46999999999964 235899 99999999999999999999999999999999999999 999876 5999999
Q ss_pred ccccCCCcHHHHhcc-----CCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 667 SSWIQTGTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 667 ~pwI~ngTIreNIlf-----G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
++. ...++.+|+.+ ....++++++++++..++.++... .....||||||||++||||++++|++
T Consensus 580 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL~~~p~l 648 (718)
T PLN03073 580 HHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHI 648 (718)
T ss_pred ccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHHhcCCCE
Confidence 973 34466666432 112456788889999988754321 23568999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHH
Q 004004 742 YIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If~~ 762 (779)
+||||||++||+.+...+.+.
T Consensus 649 LLLDEPT~~LD~~s~~~l~~~ 669 (718)
T PLN03073 649 LLLDEPSNHLDLDAVEALIQG 669 (718)
T ss_pred EEEcCCCCCCCHHHHHHHHHH
Confidence 999999999999998886543
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.93 E-value=5.9e-26 Score=269.43 Aligned_cols=157 Identities=26% Similarity=0.397 Sum_probs=130.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|+++.|+.. +...+.++ ++||++++||+++|+|++|||||||+++|.|+++|++| ++.++|
T Consensus 4 ~l~~~nl~~~y~~~--~~~~~il~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSG--EEQVEVLK-GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG-TYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCC--CCCeeeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEcCcCCHHH
Confidence 48899999999641 11246899 99999999999999999999999999999999999999 998876
Q ss_pred -------eEEEEccccccCC-CcHHHHhccCC-----CC--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------KKAYVPQSSWIQT-GTIRENILFGK-----DM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------~iayV~Q~pwI~n-gTIreNIlfG~-----~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++|++|++.++. .|+.||+.++. +. .+++..+.++.+++.+.++. ...+||||
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~G 148 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGG 148 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHH
Confidence 2799999999986 59999998642 11 12345566666666554443 34589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||++||||+.++|+++||||||++||+.+.+.+.+
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ 185 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999988765
No 324
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=8.4e-26 Score=267.85 Aligned_cols=155 Identities=27% Similarity=0.419 Sum_probs=125.6
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEc
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~ 665 (779)
+..++++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|.|+++|++| +|.++. .++|++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~-~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~~~i~y~~ 388 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVK-DFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-RIHCGTKLEVAYFD 388 (635)
T ss_pred CceEEEeeeEEEECC------eEEEc-CcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCCcEEEEEe
Confidence 346899999999964 46899 99999999999999999999999999999999999999 998843 599999
Q ss_pred cccc-c-CCCcHHHHhccCCC-C--C--HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 004004 666 QSSW-I-QTGTIRENILFGKD-M--R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 666 Q~pw-I-~ngTIreNIlfG~~-~--d--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ 738 (779)
|++- + .+.|+.||+.++.+ . + +.+..+.++..++..+.. + .....||||||||++||||+.++
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA------M----TPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH------h----ChhhhCCHHHHHHHHHHHHHhcC
Confidence 9862 4 44699999987542 1 2 234455566666543211 1 22357999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHH
Q 004004 739 SDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 739 adI~LLDDp~SALDa~t~~~If 760 (779)
|+++||||||++||..+...+.
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~ 480 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLE 480 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999976544
No 325
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=7.6e-26 Score=287.51 Aligned_cols=156 Identities=25% Similarity=0.395 Sum_probs=133.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|+++.|++ .++++++ |+||++++||+++|+||+|||||||+++|.|..+|++| +|.++|
T Consensus 927 ~~L~I~nLsK~y~~----~~k~aL~-~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG-~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP----SGRPAVD-RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG-TVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC----CCceEEE-eeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCce-EEEECCEECcchHHH
Confidence 46999999999963 1356899 99999999999999999999999999999999999999 999988
Q ss_pred ---eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++||+|++.+++ .|++|||.|+.. .+ +++.++.++.++|.+.. ..+..+||||||||
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQR 1069 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRK 1069 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHH
Confidence 3899999998886 599999987421 11 23456677777765433 34457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++||||+..+|+++|||||||+||+.+.+++++
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~ 1102 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 999999999999999999999999999999876
No 326
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=252.66 Aligned_cols=160 Identities=25% Similarity=0.400 Sum_probs=131.3
Q ss_pred ccEEEeeeEEEecccc-----ccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----
Q 004004 589 VAIDIEAGEYAWDARE-----ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~-----~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---- 659 (779)
..++++|++..|.... .......++ |+||++++||.+||||+||||||||.++|+|..+|++| +|.++|
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~-~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVD-DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG-SIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeee-eeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEeCcccc
Confidence 4578999999997421 011235688 99999999999999999999999999999999999999 898877
Q ss_pred -----------eEEEEcccccc---CCCcHHHHhccC----CCC----CHHHHHHHHHHccchHH-HhhccCCCCccccC
Q 004004 660 -----------KKAYVPQSSWI---QTGTIRENILFG----KDM----RQSFYEEVLEGCALNQD-IEMWADGDLSVVGE 716 (779)
Q Consensus 660 -----------~iayV~Q~pwI---~ngTIreNIlfG----~~~----d~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGE 716 (779)
++-+|.|+|.= ...||+++|.-. ... -+++..+.++..+|.++ +...|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP--------- 427 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP--------- 427 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------
Confidence 36799999983 668999999632 222 12356666888888864 34444
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||||||||||||||+..+|+++++|||+||||+-+..+|.+
T Consensus 428 --~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 428 --HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred --hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 6799999999999999999999999999999999999999775
No 327
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8e-26 Score=222.82 Aligned_cols=156 Identities=28% Similarity=0.432 Sum_probs=124.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
|+.+|++++-.. +..++ +++|++++||.+||+||+|+||||||++|.||+.|.+| ++.++|.
T Consensus 2 i~a~nls~~~~G------r~ll~-~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G-~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLAG------RRLLD-GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSG-EVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEeec------ceecc-CcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCC-eEeeCCcChhhCCHHHH
Confidence 567888887653 56888 99999999999999999999999999999999999999 9999983
Q ss_pred ---EEEEcccccc-CCCcHHHHhccCC-CC----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 661 ---KAYVPQSSWI-QTGTIRENILFGK-DM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 661 ---iayV~Q~pwI-~ngTIreNIlfG~-~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
-|..||+.-+ |.=|++|-+.+|. |. +.++-+++.+.|=..-|+..|...|- ..||||++||++|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-------~~LSGGEqQRVql 146 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-------RTLSGGEQQRVQL 146 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch-------hhcCchHHHHHHH
Confidence 5899999887 9999999999985 22 21233333333322334555544433 4699999999999
Q ss_pred HHHHcc------CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 732 ARAVYS------NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 732 ARAly~------~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||.|.+ ++.+++|||||||||.+-..++++
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~ 182 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR 182 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCccccchHHHHHHHH
Confidence 999987 445899999999999987777654
No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=4.7e-26 Score=263.33 Aligned_cols=164 Identities=19% Similarity=0.389 Sum_probs=126.9
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++. +.++ ++||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 257 ~l~~~~l~~-----------~~l~-~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G-~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG-----------PGVN-DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSG-YVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc-----------CCcc-cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHH
Confidence 578888763 2588 99999999999999999999999999999999999999 999977
Q ss_pred ----eEEEEcccc---cc-CCCcHHHHhccCCC---------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCC
Q 004004 660 ----KKAYVPQSS---WI-QTGTIRENILFGKD---------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ----~iayV~Q~p---wI-~ngTIreNIlfG~~---------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
.++||+|+| .+ .+.|++||+.++.. .+ +++.+++++.++|.+ -......
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 393 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAI 393 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCch
Confidence 289999997 34 55799999987521 11 123344455544421 1123455
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
..||||||||++||||+..+|+++||||||++||+.+.+.+.+ .+....++ .++.++|
T Consensus 394 ~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtH 453 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSS 453 (501)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcC
Confidence 6899999999999999999999999999999999999988775 44444332 3445555
No 329
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=4.4e-26 Score=249.07 Aligned_cols=137 Identities=29% Similarity=0.379 Sum_probs=110.5
Q ss_pred EEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------eEEEEccccccCCC-cHHHHhccCCC---CC----HH
Q 004004 628 VCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQTG-TIRENILFGKD---MR----QS 688 (779)
Q Consensus 628 IvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-----------~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~ 688 (779)
|+||+|||||||+++|+|+++|.+| +|.++| .++|++|++.+|.. |++|||.|+.. .+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSG-SIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 5899999999999999999999999 999987 38999999999864 99999998642 22 23
Q ss_pred HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
+.+++++..+|.+..+.. ..+||||||||++||||+.++|+++|||||||+||+++.+.+.+. +....
T Consensus 80 ~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~-l~~l~ 147 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLE-LKTIQ 147 (325)
T ss_pred HHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHH-HHHHH
Confidence 566777777776554433 368999999999999999999999999999999999998877653 44443
Q ss_pred HH---HHhHhcc
Q 004004 769 HQ---LLFSINH 777 (779)
Q Consensus 769 ~~---~~~~~~~ 777 (779)
++ -++.|+|
T Consensus 148 ~~~g~tiiivTH 159 (325)
T TIGR01187 148 EQLGITFVFVTH 159 (325)
T ss_pred HhcCCEEEEEeC
Confidence 32 2444555
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=265.19 Aligned_cols=169 Identities=20% Similarity=0.402 Sum_probs=133.9
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEc
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~ 665 (779)
+..|+++|++++|++ .++++ ++||+|++|++++|+||+|||||||+++|+|+.+|++| +|.+++ +++|++
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~-~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~~~igy~~ 381 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILD-SIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG-EIGLAKGIKLGYFA 381 (638)
T ss_pred CceEEEEeeEEEeCC------eeeec-cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCCEEEEEec
Confidence 346999999999964 46899 99999999999999999999999999999999999999 999864 699999
Q ss_pred ccc--ccC-CCcHHHHhc-cCCCCCHHHHHHHHHHccchH-HHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 004004 666 QSS--WIQ-TGTIRENIL-FGKDMRQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (779)
Q Consensus 666 Q~p--wI~-ngTIreNIl-fG~~~d~~~y~~vl~ac~L~~-di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ad 740 (779)
|++ .+. +.|+.+|+. +.....+++.+++++..++.. +... ....||||||||++||||++++|+
T Consensus 382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-----------~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE-----------ETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC-----------chhhCCHHHHHHHHHHHHHhcCCC
Confidence 985 333 358888874 222234556677777777753 2322 335799999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 741 VYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 741 I~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
++||||||++||..+...+.+ .+... ..-++.|+|
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~-~L~~~-~gtvi~vSH 485 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTE-ALIDF-EGALVVVSH 485 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHHc-CCeEEEEeC
Confidence 999999999999999987765 33332 223444455
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=264.21 Aligned_cols=167 Identities=25% Similarity=0.327 Sum_probs=124.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSS 668 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~p 668 (779)
|+++|++++|+. .++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++| .++|++|++
T Consensus 2 i~i~nls~~~g~------~~~l~-~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G-~I~~~~~~~i~~~~q~~ 73 (638)
T PRK10636 2 IVFSSLQIRRGV------RVLLD-NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG-SYTFPGNWQLAWVNQET 73 (638)
T ss_pred EEEEEEEEEeCC------ceeec-CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEecCC
Confidence 689999999964 46899 99999999999999999999999999999999999999 999987 589999976
Q ss_pred ccCCCcHHHHhccCCC-C---------------------------------CHHHHHHHHHHccchHHHhhccCCCCccc
Q 004004 669 WIQTGTIRENILFGKD-M---------------------------------RQSFYEEVLEGCALNQDIEMWADGDLSVV 714 (779)
Q Consensus 669 wI~ngTIreNIlfG~~-~---------------------------------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (779)
..+..|+.+++.-+.. + .+++.+++++..++.+ ...
T Consensus 74 ~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~~ 143 (638)
T PRK10636 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQL 143 (638)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hhh
Confidence 5555677666542110 0 0112223333333321 112
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 715 GE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
...-.+||||||||++||||+..+||++||||||++||..+...+.+ .+... ...++-|+|
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~-~L~~~-~~tviivsH 204 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK-WLKSY-QGTLILISH 204 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHH-HHHhC-CCeEEEEeC
Confidence 23446799999999999999999999999999999999999887654 33322 223444555
No 332
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.4e-26 Score=224.65 Aligned_cols=157 Identities=24% Similarity=0.384 Sum_probs=127.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.+..+|...+|.. .++.+ ++||+|++||.|++-||+|+||||....+.|+++|.+| +|.++|
T Consensus 4 ~L~a~~l~K~y~k------r~Vv~-~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G-~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSYKK------RKVVN-DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG-KILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhhCC------eeeee-eeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCc-eEEECCcccccCChHH
Confidence 3667788888864 67899 99999999999999999999999999999999999999 999988
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCCCCH---HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~~d~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL 731 (779)
-++|.||+|-||. -|++|||..--++.+ ++-++-.+.-+|-+++. ....-...|..||||||.|+.|
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~-----i~hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH-----ITHLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc-----hHHHhcCcccccccchHHHHHH
Confidence 2899999999997 599999986544322 21122222233333332 2233346799999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHH
Q 004004 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHL 759 (779)
Q Consensus 732 ARAly~~adI~LLDDp~SALDa~t~~~I 759 (779)
||||..+|..+||||||+++|+-.-..|
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dI 178 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDI 178 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHH
Confidence 9999999999999999999999887775
No 333
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=208.91 Aligned_cols=149 Identities=23% Similarity=0.384 Sum_probs=125.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC---CCCCeEEEcC--------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG-------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~---~~G~~I~i~g-------- 659 (779)
..++|++..-+. .-.|. |+|++|.+||++-+.||||||||||++-+.|.+.+ .+| ++.+++
T Consensus 3 l~l~nvsl~l~g------~cLLa-~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G-~~~l~~~~l~~lPa 74 (213)
T COG4136 3 LCLKNVSLRLPG------SCLLA-NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG-ELWLNEQRLDMLPA 74 (213)
T ss_pred eeeeeeeecCCC------ceEEE-eeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceee-EEEECCeeccccch
Confidence 467788876543 45677 99999999999999999999999999999999875 368 888877
Q ss_pred ---eEEEEccccccCC-CcHHHHhccCCCCC------HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 660 ---~iayV~Q~pwI~n-gTIreNIlfG~~~d------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
+++...|++|+|. -+|-+||+|.-|.+ ...-+.+++..+|+....+.| .+||||||.||
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARv 143 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARV 143 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHH
Confidence 4899999999986 68999999987643 223456778888888887766 47999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTH 758 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~ 758 (779)
+|-|++++.|+.+|||||||.||..-..+
T Consensus 144 aL~R~Lla~Pk~lLLDEPFS~LD~ALR~q 172 (213)
T COG4136 144 ALLRALLAQPKALLLDEPFSRLDVALRDQ 172 (213)
T ss_pred HHHHHHHhCcceeeeCCchhHHHHHHHHH
Confidence 99999999999999999999999865443
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2e-25 Score=257.61 Aligned_cols=158 Identities=20% Similarity=0.356 Sum_probs=121.1
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..|+++|+++.+ +++++ ++||+|++||+++|+||+|||||||+++|.|+.+|.+| +|.++|.
T Consensus 249 ~~i~~~~l~~~~--------~~~l~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR--------QPSIR-DVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG-TITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc--------Ccccc-eeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc-EEEECCEECCCCCHH
Confidence 358999999863 24799 99999999999999999999999999999999999999 9999872
Q ss_pred ------EEEEccccc----cCCCcHHHHhccC-----CC----CCH----HHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 661 ------KAYVPQSSW----IQTGTIRENILFG-----KD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 661 ------iayV~Q~pw----I~ngTIreNIlfG-----~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
++|++|++- ..+.|+.+|+.+. .+ .+. ++.+++++..++. ++ .....
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~-~~~~~ 388 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK---------TP-GHRTQ 388 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc---------CC-Ccccc
Confidence 789999863 3446777774332 11 111 1222333333321 11 12445
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
..+||||||||++||||+.++|+|+||||||++||+.+.+.+++ .+..+
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l 437 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAEL 437 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH-HHHHH
Confidence 57899999999999999999999999999999999999999876 34333
No 335
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=6.1e-25 Score=279.34 Aligned_cols=161 Identities=19% Similarity=0.290 Sum_probs=134.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|+++.|+. .+.++++ |+||+|++||+++|+||+|||||||+++|.|+.+|++| +|.++|
T Consensus 1936 ~~L~v~nLsK~Y~~----~~~~aL~-~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG-~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG----TSSPAVD-RLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG-DATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC----CCceEEE-eeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECcchHHH
Confidence 46999999999964 1256899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEccccccCC-CcHHHHhccCC---CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQT-GTIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~n-gTIreNIlfG~---~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++||||++-++. -|++||+.+.. ..+ +++.+++++.++|.+..+. +...||||||||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqR 2078 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRK 2078 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHH
Confidence 2899999988775 69999997531 122 2345567788888654432 346799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
++||||+..+|+|++||||||+||+.+.+.+++ .|...
T Consensus 2079 LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~-lL~~l 2116 (2272)
T TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN-TIVSI 2116 (2272)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999886 44444
No 336
>PLN03140 ABC transporter G family member; Provisional
Probab=99.92 E-value=1.1e-24 Score=275.40 Aligned_cols=163 Identities=25% Similarity=0.432 Sum_probs=132.4
Q ss_pred cEEEeeeEEEeccccc-------cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc--CCCCCeEEEcC-
Q 004004 590 AIDIEAGEYAWDAREE-------NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~-------~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~--~~~G~~I~i~g- 659 (779)
.+.++|+++..+.... .....+|+ |+|+++++|+++||+||+||||||||++|.|..+ +.+| +|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~-~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G-~I~inG~ 944 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLR-EVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIRISGF 944 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEee-CcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc-eEEECCc
Confidence 5889999988753211 01236899 9999999999999999999999999999999876 3689 999987
Q ss_pred ---------eEEEEccccccC-CCcHHHHhccCC------CCCH-H---HHHHHHHHccchHHHhhccCCCCccccCCC-
Q 004004 660 ---------KKAYVPQSSWIQ-TGTIRENILFGK------DMRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERG- 718 (779)
Q Consensus 660 ---------~iayV~Q~pwI~-ngTIreNIlfG~------~~d~-~---~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G- 718 (779)
.+|||+|++.++ +.|++||+.|+. ..++ + +.+++++..+|.+. .++.+|..|
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~ 1017 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGV 1017 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCC
Confidence 279999997654 579999998742 2222 2 35677787777542 367777655
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||||||||++||||+..+|+|++||||||+||++++.++.+
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~ 1060 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1060 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999988765
No 337
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=3.8e-25 Score=212.31 Aligned_cols=154 Identities=28% Similarity=0.415 Sum_probs=128.3
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
.+++++|....|.. ..+|+ +++|+.++|+.+.|+|.|||||||+|+||-=.-.|..| .|.++|
T Consensus 5 ~~l~v~dlHK~~G~------~eVLK-GvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G-~I~v~geei~~k~~~ 76 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLK-GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG-SIRVNGEEIRLKRDK 76 (256)
T ss_pred cceehhHHHhhccc------chhhc-ceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCc-eEEECCeEEEeeeCC
Confidence 46788888888865 46899 99999999999999999999999999999988899999 999887
Q ss_pred -----------------eEEEEccccccC-CCcHHHHhc------cCCCCCH--HHHHHHHHHccchHHHhhccCCCCcc
Q 004004 660 -----------------KKAYVPQSSWIQ-TGTIRENIL------FGKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 660 -----------------~iayV~Q~pwI~-ngTIreNIl------fG~~~d~--~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
+.++|.|+--+. ..|+-||+. +|.+-++ ++-+.-+...++.+--+.-|
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP------ 150 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP------ 150 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc------
Confidence 268999998874 489999986 3444332 34455667777766555444
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..|||||+||+||||||.-+|+++|+||||||||++---.+.+
T Consensus 151 -----~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk 193 (256)
T COG4598 151 -----AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK 193 (256)
T ss_pred -----cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH
Confidence 6899999999999999999999999999999999987666554
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8e-25 Score=214.27 Aligned_cols=122 Identities=36% Similarity=0.602 Sum_probs=103.7
Q ss_pred EeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------------
Q 004004 593 IEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------ 660 (779)
Q Consensus 593 ~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------------ 660 (779)
++|++|+|+. .++++ ++|++|++|+.++|+|++|||||||+++|.|++++.+| ++.++|.
T Consensus 2 ~~~~~~~~~~------~~~l~-~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGG------RTALD-NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCC------eeeEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCCHHHHHh
Confidence 6789999964 36899 99999999999999999999999999999999999999 9999873
Q ss_pred -EEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 661 -KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 661 -iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
++|++| ||||||||++||||+..+|
T Consensus 74 ~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 74 RIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLNP 99 (157)
T ss_pred ceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 566666 9999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 740 DVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
++++|||||++||..+...+.+ .+....++ .++.+.|
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~-~l~~~~~~~~tii~~sh 138 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLE-LLRELAEEGRTVIIVTH 138 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeC
Confidence 9999999999999999876654 34443332 3444444
No 339
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=243.92 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=127.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC----CCCeEEEcC------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG------ 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~----~G~~I~i~g------ 659 (779)
-++++|.+..|..+ ....++++ |+||+|.+||.+||||+|||||||+.++|+|..++. +| +|.++|
T Consensus 5 lL~V~nL~v~~~~~--~~~~~~v~-~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G-~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD--GGRVPAVR-DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG-EVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC--Ccceeeee-cceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccce-EEEECCcchhcC
Confidence 58999999999762 11135899 999999999999999999999999999999999987 78 998877
Q ss_pred -----------eEEEEccccc-cCCC--cHHHHhc----cCCCC----CHHHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 660 -----------KKAYVPQSSW-IQTG--TIRENIL----FGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 660 -----------~iayV~Q~pw-I~ng--TIreNIl----fG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
.|||++|+|+ .+|- ||.+-|. ..... ..++..+.++..+|.+.... ..-
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~y 151 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRY 151 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccC
Confidence 3999999988 4554 5555553 33222 23445566667777654433 223
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-..||||||||+.||+|+..+|+++|+||||+|||+.|.++|.+
T Consensus 152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~ 195 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD 195 (539)
T ss_pred CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999765
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=8.1e-25 Score=225.97 Aligned_cols=142 Identities=28% Similarity=0.422 Sum_probs=116.5
Q ss_pred cEEEeeeEEEeccccc-cCC--CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeE-EEEc
Q 004004 590 AIDIEAGEYAWDAREE-NFK--KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP 665 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~-~~~--~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~i-ayV~ 665 (779)
-++++|++..|+.... ... -..++ ||||+|++||.+++||+|||||||+-++|+|.++|++| +|..+|+- .-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd-~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVD-GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEec-ceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcc
Confidence 4788888888875210 011 24678 99999999999999999999999999999999999999 99998852 1111
Q ss_pred cccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHH-HhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 666 Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
++-..+++.+.++..+|.++ +...| ..|||||||||+||||+.-+|++++.
T Consensus 82 -----------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~ 133 (268)
T COG4608 82 -----------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVA 133 (268)
T ss_pred -----------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEe
Confidence 22234678999999999875 45555 57999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHH
Q 004004 745 DDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 745 DDp~SALDa~t~~~If~ 761 (779)
|||+||||.-+..+|.+
T Consensus 134 DEpvSaLDvSiqaqIln 150 (268)
T COG4608 134 DEPVSALDVSVQAQILN 150 (268)
T ss_pred cCchhhcchhHHHHHHH
Confidence 99999999999998765
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=8.1e-25 Score=259.46 Aligned_cols=174 Identities=24% Similarity=0.305 Sum_probs=123.5
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--EEEEccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQS 667 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--iayV~Q~ 667 (779)
-|+++|++++|+. .++++ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++|. ++|++|.
T Consensus 3 ~l~i~~ls~~~~~------~~il~-~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G-~I~~~~~~~~~~l~q~ 74 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLD-NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDG-RIIYEQDLIVARLQQD 74 (635)
T ss_pred EEEEeeEEEEeCC------ceeEe-CcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEeCCCCEEEEeccC
Confidence 3789999999964 46899 99999999999999999999999999999999999999 9999874 7899998
Q ss_pred ccc-CCCcHHHHhccCCC-------------------CCHHH---HHHH---HHHc---c----chHHHhhccCCCCccc
Q 004004 668 SWI-QTGTIRENILFGKD-------------------MRQSF---YEEV---LEGC---A----LNQDIEMWADGDLSVV 714 (779)
Q Consensus 668 pwI-~ngTIreNIlfG~~-------------------~d~~~---y~~v---l~ac---~----L~~di~~Lp~Gd~T~I 714 (779)
+.. ..+|+.+++..+.. ..++. +.++ ++.. . ..+-++.+ |.. .
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~--~ 150 (635)
T PRK11147 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD--P 150 (635)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--C
Confidence 743 34788877643210 00000 0000 0000 0 01111211 111 1
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 715 GE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
...-..||||||||++||||+..+||++||||||++||.++...+.+ .+... ...++.|+|
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~-~L~~~-~~tvlivsH 211 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG-FLKTF-QGSIIFISH 211 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHhC-CCEEEEEeC
Confidence 23346799999999999999999999999999999999999987654 33332 223444555
No 342
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.9e-25 Score=215.15 Aligned_cols=152 Identities=21% Similarity=0.313 Sum_probs=124.3
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
+++.+++-+|++ ....++ |++|+++.|+.++|-|++|+||||+|+.|.+++.|++| .|.++|
T Consensus 2 l~v~~l~K~y~~-----~v~Avr-dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G-~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS-----KVQAVR-DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG-KVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC-----HHhhhh-heeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCc-eEEEeecccccChHHHh
Confidence 567788888865 234688 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEccc-cccCCCcHHHHhccCCC-C------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQS-SWIQTGTIRENILFGKD-M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~-pwI~ngTIreNIlfG~~-~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
+|+..+-+ +.--.-|.||||.|... + -+++.++..+.-+|.+-++ .|-.++|-|+||||+
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~ 143 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVA 143 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHH
Confidence 36666544 44456899999986322 2 2567777777777766554 344579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
||||+.+||+||+||||+|+||..+.+.+.
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~ 173 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFH 173 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence 999999999999999999999998876543
No 343
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=5.5e-25 Score=254.81 Aligned_cols=149 Identities=19% Similarity=0.389 Sum_probs=118.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.++++|++. ..++ ++||+|++|++++|+||+|||||||+++|.|..+|.+| +|.++|.
T Consensus 268 ~l~~~~l~~-----------~~l~-~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG-----------EGFR-NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGG-RIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC-----------CCcc-ceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEECCCCCHHH
Confidence 588888872 1488 99999999999999999999999999999999999999 9998772
Q ss_pred -----EEEEccccc---cC-CCcHHHHhccC----CCC--C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 661 -----KAYVPQSSW---IQ-TGTIRENILFG----KDM--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 661 -----iayV~Q~pw---I~-ngTIreNIlfG----~~~--d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
++||+|++. ++ +-|+.||+... ... + +++.+++++.+++.. .........|
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 404 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTL 404 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccC
Confidence 899999862 44 46999999532 011 1 122344444444421 1223445679
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||||++||||+..+|+++||||||++||+.+.+.+.+
T Consensus 405 SgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 9999999999999999999999999999999999988776
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=1.9e-24 Score=215.21 Aligned_cols=119 Identities=27% Similarity=0.402 Sum_probs=95.5
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------EEEEccccccCCCcHHHHh
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENI 679 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------iayV~Q~pwI~ngTIreNI 679 (779)
..++++ |+||++++|++++|+||+||||||||+++++ .+| ++.++|. ++|++|
T Consensus 7 ~~~~l~-~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G-~v~~~~~~~~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQ-NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASG-KARLISFLPKFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeec-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCC-cEEECCcccccccccEEEEhH-------------
Confidence 357899 9999999999999999999999999999974 588 8888764 444444
Q ss_pred ccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCcCHHHHH
Q 004004 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGT 757 (779)
Q Consensus 680 lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~--adI~LLDDp~SALDa~t~~ 757 (779)
.++++..+|.+ . ...++..+||||||||++||||++++ |+++||||||++||+++.+
T Consensus 68 -----------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~ 126 (176)
T cd03238 68 -----------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN 126 (176)
T ss_pred -----------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence 23444444321 1 24567789999999999999999999 9999999999999999998
Q ss_pred HHHHHHHhHH
Q 004004 758 HLFKARTFSL 767 (779)
Q Consensus 758 ~If~~~i~g~ 767 (779)
.+.+ .+...
T Consensus 127 ~l~~-~l~~~ 135 (176)
T cd03238 127 QLLE-VIKGL 135 (176)
T ss_pred HHHH-HHHHH
Confidence 8765 34433
No 345
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1e-24 Score=205.93 Aligned_cols=153 Identities=26% Similarity=0.389 Sum_probs=128.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
+|+++|.+|.|.. ..+|. ||+|+.+.|+.+.+.||||+|||||++.+-=.-.|.+| +..+.|
T Consensus 2 sirv~~in~~yg~------~q~lf-di~l~~~~getlvllgpsgagkssllr~lnlle~p~sg-~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFYGA------HQALF-DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccccc------chhee-eeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCC-eEEecccccccccCcc
Confidence 5889999999975 45788 99999999999999999999999999988766667899 888755
Q ss_pred ---------eEEEEcccccc-CCCcHHHHhcc------CCCCCH--HHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 ---------KKAYVPQSSWI-QTGTIRENILF------GKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 ---------~iayV~Q~pwI-~ngTIreNIlf------G~~~d~--~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++.|.|+-.+ ..-|+.||+.= |-+-++ .+-.+.++...|.+.-+.+| ..|
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhl 142 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHL 142 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eec
Confidence 38999999887 56899999862 333333 34456777778877777776 679
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||.||+|||||+.-+|+++|+||||+|||++...++.+
T Consensus 143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~ 182 (242)
T COG4161 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 (242)
T ss_pred ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH
Confidence 9999999999999999999999999999999998888764
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=7e-25 Score=256.43 Aligned_cols=146 Identities=23% Similarity=0.323 Sum_probs=121.3
Q ss_pred eeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-----------EcCe---
Q 004004 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHGK--- 660 (779)
Q Consensus 595 n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-----------i~g~--- 660 (779)
+++.+|+. ....|+ +++ .+++|+.++|+||+|||||||+++|.|+++|++| +|. ++|+
T Consensus 78 ~~~~~yg~-----~~~~L~-~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G-~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYGV-----NGFKLY-GLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLG-DYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEecC-----CceeEe-cCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCc-cccCCCcHHHHHHHhCChHHH
Confidence 36777754 235799 999 8999999999999999999999999999999999 886 5541
Q ss_pred ----------------EEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 661 ----------------KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 661 ----------------iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+.|++|.|.++.+|++||+.+.. ..++.+++++..+|.+..+ + .-.+||||
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~-------~----~~~~LSgG 216 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILD-------R----DISELSGG 216 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhc-------C----ChhhCCHH
Confidence 34666788889999999997532 2456788888888765432 2 23579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||||++||||+.++|++||||||||+||+++..++++
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~ 253 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR 253 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999998876
No 347
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.4e-24 Score=237.84 Aligned_cols=154 Identities=26% Similarity=0.379 Sum_probs=130.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
.-++++|++.+|+. -+.|+ ++||++.+||.+|++|.+|+|||||+|.|.|-|+|++| +|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~-~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFGG------VKALD-GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcCC------ceeec-cceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHH
Confidence 35889999999976 47899 99999999999999999999999999999999999999 9999994
Q ss_pred ------EEEEcccccc-CCCcHHHHhccCCCC-------CHHHHH----HHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 661 ------KAYVPQSSWI-QTGTIRENILFGKDM-------RQSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 661 ------iayV~Q~pwI-~ngTIreNIlfG~~~-------d~~~y~----~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
|+.|.|+.-| .|-||.|||-+|++. |..+.+ ++++..++. ..-++.+ .+||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v----~~Ls 147 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLV----GDLS 147 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhh----hhCC
Confidence 8999999997 679999999988753 323322 233333332 1134444 5699
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||-|+||||++.+++|+|||||||||+.+-.+++|+
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~ 186 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999997
No 348
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=6e-24 Score=223.94 Aligned_cols=156 Identities=24% Similarity=0.371 Sum_probs=122.4
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG------ 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g------ 659 (779)
++++|.+.+|..+ ......++ |+||++++||.+||||+|||||||+.++|+|++++ .+| +|.++|
T Consensus 2 L~v~nL~v~f~~~--~g~v~av~-~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD--AGVVKAVD-GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-EILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC--CccEEEEe-ceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-EEEECCcccccC
Confidence 5788888888652 11246788 99999999999999999999999999999999983 567 887776
Q ss_pred -----------eEEEEcccccc-CC--CcHH----HHhccCCCC-----CHHHHHHHHHHccchH---HHhhccCCCCcc
Q 004004 660 -----------KKAYVPQSSWI-QT--GTIR----ENILFGKDM-----RQSFYEEVLEGCALNQ---DIEMWADGDLSV 713 (779)
Q Consensus 660 -----------~iayV~Q~pwI-~n--gTIr----eNIlfG~~~-----d~~~y~~vl~ac~L~~---di~~Lp~Gd~T~ 713 (779)
.|||++|+|-- +| -||. |-+...... ..++..+.++..++.+ -+++.|
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP------ 151 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP------ 151 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC------
Confidence 49999999862 33 2333 334332222 1345667777777764 345555
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||||||||+.||=|+..+|+++|-||||+|||..+.++|.+
T Consensus 152 -----helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~ 194 (316)
T COG0444 152 -----HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD 194 (316)
T ss_pred -----cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH
Confidence 5799999999999999999999999999999999999998765
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=239.75 Aligned_cols=160 Identities=24% Similarity=0.357 Sum_probs=126.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q~ 667 (779)
.|.++|++++|+. ++.++ ++|+++.+|+++++||++|+||||||++|.|+..|.+| +|...+ +++|++|+
T Consensus 3 ~i~~~~ls~~~g~------~~l~~-~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G-~i~~~~~~~v~~l~Q~ 74 (530)
T COG0488 3 MITLENLSLAYGD------RPLLE-NVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-EVTRPKGLRVGYLSQE 74 (530)
T ss_pred eEEEeeeEEeeCC------ceeec-CCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCC-eEeecCCceEEEeCCC
Confidence 4789999999964 67899 99999999999999999999999999999999999999 999887 79999999
Q ss_pred cccCCC-cHHHHhccCCCC-C--HHHHHHHHHH-------------------------ccchHHHhhccCCC-CccccCC
Q 004004 668 SWIQTG-TIRENILFGKDM-R--QSFYEEVLEG-------------------------CALNQDIEMWADGD-LSVVGER 717 (779)
Q Consensus 668 pwI~ng-TIreNIlfG~~~-d--~~~y~~vl~a-------------------------c~L~~di~~Lp~Gd-~T~IGE~ 717 (779)
+..... |++|.+.-|... . ..+|+++... ......+..|.... ++.
T Consensus 75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~---- 150 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRP---- 150 (530)
T ss_pred CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCc----
Confidence 999865 999999987531 0 1122222110 11111222221111 333
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-.+||||||-|++||||+..+||++||||||..||..+-+.+-+
T Consensus 151 ~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~ 194 (530)
T COG0488 151 VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED 194 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH
Confidence 35799999999999999999999999999999999999988754
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=3.7e-23 Score=220.15 Aligned_cols=160 Identities=25% Similarity=0.365 Sum_probs=127.0
Q ss_pred CccEEEeeeEEEeccccc-----cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---
Q 004004 588 DVAIDIEAGEYAWDAREE-----NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~-----~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--- 659 (779)
...++.+|+...|+-... ...-...+ ++||+.++||.++|||+||||||||-.+|++..++. | .|...|
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd-~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G-~I~F~G~~i 350 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVD-GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G-EIRFDGQDI 350 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEec-cceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c-eEEECCccc
Confidence 345788888887764210 01123467 899999999999999999999999999999999876 9 999887
Q ss_pred -------------eEEEEccccc---cCCCcHHHHhccCCC------CCH---HHHHHHHHHccchHHH-hhccCCCCcc
Q 004004 660 -------------KKAYVPQSSW---IQTGTIRENILFGKD------MRQ---SFYEEVLEGCALNQDI-EMWADGDLSV 713 (779)
Q Consensus 660 -------------~iayV~Q~pw---I~ngTIreNIlfG~~------~d~---~~y~~vl~ac~L~~di-~~Lp~Gd~T~ 713 (779)
.+-.|+|||+ =...||-+-|.=|.. -+. ++..++++..+|+... ...|
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP------ 424 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP------ 424 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC------
Confidence 3789999998 255788888865522 123 4555666678888754 4555
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
...|||||||||||||+.-+|.+++|||||||||-.+..+|.+
T Consensus 425 -----hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 425 -----HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred -----cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 4689999999999999999999999999999999999998765
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=1.7e-23 Score=265.50 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=120.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc----cCCCCCeEEEcCe------------EEEEccccccCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHGK------------KAYVPQSSWIQT 672 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~----~~~~G~~I~i~g~------------iayV~Q~pwI~n 672 (779)
+++|+ |+|+++++||+++|+||+||||||||++|.|.. ++.+| +|.++|. ++||+|++.++.
T Consensus 74 ~~iL~-~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G-~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILK-PMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG-VITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeee-CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcee-EEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45899 999999999999999999999999999999986 46899 9999872 899999976654
Q ss_pred -CcHHHHhccCC----------CCCHHHH-----HHHHHHccchHHHhhccCCCCccccCC-CCCCChHHHHHHHHHHHH
Q 004004 673 -GTIRENILFGK----------DMRQSFY-----EEVLEGCALNQDIEMWADGDLSVVGER-GINLSGGQKQRIQLARAV 735 (779)
Q Consensus 673 -gTIreNIlfG~----------~~d~~~y-----~~vl~ac~L~~di~~Lp~Gd~T~IGE~-G~nLSGGQKQRIaLARAl 735 (779)
-|++||+.|+. ..+++++ +++++..+| .+--+|.||++ ...||||||||++||||+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 69999998852 1233322 223444444 33457888864 457999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
..+|+|++||||||+||+.++..+.+ .++.+
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~-~L~~l 255 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIR-ALKTS 255 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHH-HHHHH
Confidence 99999999999999999999998775 34443
No 352
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=4e-23 Score=226.41 Aligned_cols=154 Identities=27% Similarity=0.415 Sum_probs=133.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|.+..|+. --..+ ++||+|++||..|+.|++|+|||||++.|.|.|+|++| +|.++|+
T Consensus 3 ~~l~~~~itK~f~~------~~And-~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G-eI~v~G~~v~~~sP~ 74 (501)
T COG3845 3 PALEMRGITKRFPG------VVAND-DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG-EIRVDGKEVRIKSPR 74 (501)
T ss_pred ceEEEeccEEEcCC------EEecC-ceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcc-eEEECCEEeccCCHH
Confidence 46899999999975 23566 99999999999999999999999999999999999999 9999994
Q ss_pred ------EEEEccccccC-CCcHHHHhccCCCC------C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 661 ------KAYVPQSSWIQ-TGTIRENILFGKDM------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 661 ------iayV~Q~pwI~-ngTIreNIlfG~~~------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
|+.|.|++-++ +-|+.|||..|.+- | .++.++..+..+|.-|.+ +.-..||=
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsV 143 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSV 143 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCc
Confidence 89999999975 68999999999863 2 345666666677655543 33467999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
||+|||.|=+|||++|+++|||||||-|-+.-.+++|+
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~ 181 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999987
No 353
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=5e-23 Score=241.44 Aligned_cols=171 Identities=26% Similarity=0.455 Sum_probs=139.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC---CCCCeEEEcC------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG------ 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~---~~G~~I~i~g------ 659 (779)
..++++|.+..-+.... ..+.+|+ +|+.++++||+.||.|||||||||||++|.|-.+. .+| +|.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~-~~k~iL~-~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G-~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK-KTKTILK-GVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG-EILLNGRPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCC-ccceeee-CcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE-EEEECCccCchh
Confidence 35778888776654110 2467899 99999999999999999999999999999999974 789 999999
Q ss_pred ----eEEEEccccc-cCCCcHHHHhccC------CCCC----HHHHHHHHHHccchHHHhhccCCCCccccCCC-CCCCh
Q 004004 660 ----KKAYVPQSSW-IQTGTIRENILFG------KDMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG-INLSG 723 (779)
Q Consensus 660 ----~iayV~Q~pw-I~ngTIreNIlfG------~~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G-~nLSG 723 (779)
..|||.|+-. +-+-||||++.|. +..+ +++++++++.-+|. +. .||.||..+ ..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCcccc
Confidence 3799999888 5679999999874 2222 45777888888876 44 378888643 58999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFS 774 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~ 774 (779)
|||+|+++|--+..||.|++||||||+||++++.++.+ .|+++..+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~-----~Lk~lA~~ 219 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ-----LLKRLARS 219 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH-----HHHHHHhC
Confidence 99999999999999999999999999999999998654 45555544
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.9e-23 Score=211.58 Aligned_cols=155 Identities=24% Similarity=0.394 Sum_probs=124.3
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
+.-|+++|++..|.. +++|+ |||.+|++||..+|+||+||||||||+.+.|+.+|.+| .+.+.|
T Consensus 29 ~~li~l~~v~v~r~g------k~iL~-~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg-~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRRNG------KKILG-DLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG-DVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEECC------Eeecc-ccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCC-ceeeeeeeccCCcc
Confidence 356999999999975 68999 99999999999999999999999999999999999999 888765
Q ss_pred ------eEEEEccc---cccCCCcHHHHhccC---------CCCCHHHHHHH---HHHccchHHHhhccCCCCccccCCC
Q 004004 660 ------KKAYVPQS---SWIQTGTIRENILFG---------KDMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGERG 718 (779)
Q Consensus 660 ------~iayV~Q~---pwI~ngTIreNIlfG---------~~~d~~~y~~v---l~ac~L~~di~~Lp~Gd~T~IGE~G 718 (779)
+|+||+-+ -+--+-++||-|+=| .++|+++++++ ++.+++.+ + .+..=
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-l----------a~r~~ 169 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-L----------ADRPF 169 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-h----------ccCch
Confidence 37888743 233467788888733 24566655543 44444433 2 22334
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||-|||||+-||||+..+|.++|||||+.+||....+.+.+
T Consensus 170 ~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~ 212 (257)
T COG1119 170 GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN 212 (257)
T ss_pred hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 6799999999999999999999999999999999988766544
No 355
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=210.53 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=126.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
.+.++++.++.. -..++ |+||++++||.++++||+||||||++++|.|+|+|++| +|..+|.
T Consensus 5 L~v~~l~k~FGG------l~Al~-~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G-~v~~~G~~it~l~p~~i 76 (250)
T COG0411 5 LEVRGLSKRFGG------LTAVN-DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG-TVIFRGRDITGLPPHRI 76 (250)
T ss_pred eeeccceeecCC------EEEEe-ceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCc-eEEECCcccCCCCHHHH
Confidence 567888888864 35788 99999999999999999999999999999999999999 9999883
Q ss_pred ----EEEEccccccCC-CcHHHHhccCCC-------------C--C----HHHHHHHHHHccchHHHhhccCCCCccccC
Q 004004 661 ----KAYVPQSSWIQT-GTIRENILFGKD-------------M--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (779)
Q Consensus 661 ----iayV~Q~pwI~n-gTIreNIlfG~~-------------~--d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE 716 (779)
++--+|.+-+|. -|+-||++.|.. + + .++-.+.++.++|.+. -.+
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~ 145 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADR 145 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcc
Confidence 789999999875 799999987622 1 1 1233344455555443 335
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
...+||+||+.|+.||||+..+|+++|||||.+++.+.-...+.+
T Consensus 146 ~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~ 190 (250)
T COG0411 146 PAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190 (250)
T ss_pred hhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH
Confidence 567899999999999999999999999999999999988887765
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=3.3e-23 Score=262.07 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=122.2
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC---CCCeEEEcC----------eEEEEccccccC-CCc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSSWIQ-TGT 674 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~---~G~~I~i~g----------~iayV~Q~pwI~-ngT 674 (779)
..+|+ |+|+.|+||++++|+||+||||||||++|.|.+++. +| +|.++| .++||+|++.++ +.|
T Consensus 178 ~~IL~-~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G-~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 178 LTILK-DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-EITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ceecc-CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEechhhcccceeEEecccccCCCcCc
Confidence 45799 999999999999999999999999999999999987 99 999987 389999997655 579
Q ss_pred HHHHhccCCC-------CC-------HH---------HHHHHHHHccc---------hHHHh--hccCCCCccccCCC-C
Q 004004 675 IRENILFGKD-------MR-------QS---------FYEEVLEGCAL---------NQDIE--MWADGDLSVVGERG-I 719 (779)
Q Consensus 675 IreNIlfG~~-------~d-------~~---------~y~~vl~ac~L---------~~di~--~Lp~Gd~T~IGE~G-~ 719 (779)
++||+.|+.. ++ ++ ++++..+++.. ++-++ .|++-.+|.||++. .
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 9999988521 11 11 11112222221 11222 24556689998765 5
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
.||||||||++||||+..+|+++++||||++||+.++..+.+ +++.+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~l 382 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQI 382 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHH
Confidence 799999999999999999999999999999999999999874 45443
No 357
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3e-23 Score=205.08 Aligned_cols=151 Identities=26% Similarity=0.369 Sum_probs=126.4
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEcccccc---C
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSWI---Q 671 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~pwI---~ 671 (779)
++++|+ +++|+|++|+++-|+|.+|+|||||+++|.|..+|++| +|.++|. ++-|.|+|-- -
T Consensus 18 ek~~l~-~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G-~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 18 EKRALN-GLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG-QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHHh-cCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCc-eEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 467899 99999999999999999999999999999999999999 9999983 6889999974 6
Q ss_pred CCcHHHHhccCCC------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 004004 672 TGTIRENILFGKD------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (779)
Q Consensus 672 ngTIreNIlfG~~------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLD 745 (779)
+-||.||+..... +....- .=+...-.+-++.+|.|.+-..+.+---|||||||=++|+-|..+.|+|++||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln--~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALN--ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhh--HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 7899999986321 111000 00111223457788889998888888899999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHH
Q 004004 746 DPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 746 Dp~SALDa~t~~~If~~ 762 (779)
|=|+||||.++..+.+.
T Consensus 174 EHTAALDPkta~~vm~l 190 (263)
T COG1101 174 EHTAALDPKTAEFVMEL 190 (263)
T ss_pred chhhcCCcchHHHHHHH
Confidence 99999999999988763
No 358
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.3e-23 Score=201.28 Aligned_cols=152 Identities=28% Similarity=0.439 Sum_probs=128.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~---------- 660 (779)
|+++|++.+|.. +.++. ++|++|++|.+++++||+|+||||||+.+.+++++.+| +|.++|.
T Consensus 2 I~i~nv~K~y~~------~~vl~-~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSYGT------KVVLD-DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhhCC------EEeec-cceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHH
Confidence 678999999975 67899 99999999999999999999999999999999999999 9999983
Q ss_pred ---EEEEcccccc-CCCcHHHHhccCC-CC--------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH
Q 004004 661 ---KAYVPQSSWI-QTGTIRENILFGK-DM--------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (779)
Q Consensus 661 ---iayV~Q~pwI-~ngTIreNIlfG~-~~--------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ 727 (779)
++..-|+..+ -.-||||=+.||+ || |....+++++--.|++ +.+.+. ..|||||||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----l~dryL-------d~LSGGQrQ 142 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----LSDRYL-------DELSGGQRQ 142 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----hHHHhH-------Hhcccchhh
Confidence 6778888887 4589999999997 65 3345566666665532 222222 369999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|-=+|-.+.+|.|-++||||+.+||..-+..+++
T Consensus 143 RAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk 176 (252)
T COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176 (252)
T ss_pred hhhhheeeeccCcEEEecCcccccchHHHHHHHH
Confidence 9999999999999999999999999988777554
No 359
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.88 E-value=6.2e-19 Score=183.45 Aligned_cols=267 Identities=18% Similarity=0.265 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (779)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~i 357 (779)
++..++.++..++..+.|++++.++|.+.++.. ......+.++..++...++.......+.+...+.+.+++..+...+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNS-DNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999766542 1123344444444444455555555556667899999999999999
Q ss_pred HHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004004 358 YKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIW-LLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433 (779)
Q Consensus 358 y~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~~~~~~-~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~~~~ 433 (779)
++|.++.+.. .+++|+++|++++|++++++.+......+ ...+.++.++++++ ..+|..+++.++..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhh
Confidence 9999999865 35999999999999999999886544333 33444444444443 3454666666667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H
Q 004004 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA-SPT-L 511 (779)
Q Consensus 434 ~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~-~p~-l 511 (779)
.+.|+.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+...+.............. ... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887776555544444333333222222 222 3
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 004004 512 VSVITFGVCI-LLKTPLTSGAVLSALATFRILQEPI 546 (779)
Q Consensus 512 v~~~~f~~~~-l~~~~Lt~g~vft~lal~~~l~~pl 546 (779)
+.++.++++. ...+.+|+|.+++++.++..+..|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 4566678888 8899999999999999999999986
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=5.6e-22 Score=236.17 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=109.3
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..|+++|++++|+. .+.|+ |+||+|++|++++|||++||||||||++|.|+.. .| +--+|+|+|++|++
T Consensus 176 ~~I~i~nls~~y~~------~~ll~-~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g--~p~~g~I~~~~Q~~ 244 (718)
T PLN03073 176 KDIHMENFSISVGG------RDLIV-DASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG--IPKNCQILHVEQEV 244 (718)
T ss_pred eeEEEceEEEEeCC------CEEEE-CCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC--CCCCCEEEEEeccC
Confidence 45999999999964 45899 9999999999999999999999999999999741 23 22245788888875
Q ss_pred ccCCCcHHHHhccC-------------------------------------CCCCH--HHHHHHHHHccch------H--
Q 004004 669 WIQTGTIRENILFG-------------------------------------KDMRQ--SFYEEVLEGCALN------Q-- 701 (779)
Q Consensus 669 wI~ngTIreNIlfG-------------------------------------~~~d~--~~y~~vl~ac~L~------~-- 701 (779)
--.+-|+.|.++-. .+.++ +++.++.+..++. .
T Consensus 245 ~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~ 324 (718)
T PLN03073 245 VGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARA 324 (718)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 43333443322110 01111 2333333332221 0
Q ss_pred --HHhhccCCCCc-cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 702 --DIEMWADGDLS-VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 702 --di~~Lp~Gd~T-~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-++.+ |... .....-.+||||||||++||||+..+|+++||||||++||+++...+.+
T Consensus 325 ~~~L~~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~ 385 (718)
T PLN03073 325 ASILAGL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET 385 (718)
T ss_pred HHHHHHC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 11111 1110 0112235799999999999999999999999999999999999888765
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-22 Score=196.89 Aligned_cols=142 Identities=26% Similarity=0.362 Sum_probs=119.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------------EEEEcccccc-CCCcH
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYVPQSSWI-QTGTI 675 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------------iayV~Q~pwI-~ngTI 675 (779)
...+. +++|++.+||.+-|+||+||||||||+.|.|.++|.+| +|.++|. .-|..-+|=| ..-|+
T Consensus 15 ~~lf~-~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G-~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 15 RTLFS-DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG-EVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred ceeec-ceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCC-eEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 56778 99999999999999999999999999999999999999 9999862 2344444444 66899
Q ss_pred HHHhccCCC----CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCc
Q 004004 676 RENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (779)
Q Consensus 676 reNIlfG~~----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SAL 751 (779)
.||+.|-++ -+++...++++..+|. +++.+|- .+||-|||.|+||||-..+.+|+.||||||+|+
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~----------~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPV----------GQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccch----------hhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 999998654 3568899999999996 4555664 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 004004 752 DAHTGTHLFKART 764 (779)
Q Consensus 752 Da~t~~~If~~~i 764 (779)
|.+... +|.+.+
T Consensus 162 Dk~g~a-~l~~l~ 173 (209)
T COG4133 162 DKEGVA-LLTALM 173 (209)
T ss_pred CHHHHH-HHHHHH
Confidence 998765 344433
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=5e-21 Score=219.11 Aligned_cols=158 Identities=24% Similarity=0.359 Sum_probs=135.0
Q ss_pred CCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEE
Q 004004 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (779)
Q Consensus 587 ~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV 664 (779)
.+..++++|++++|++ ..++++ ++||.|++|+++||+||+|+|||||++.|+|+..|.+| +|.+.- ++||.
T Consensus 318 g~~vl~~~~~~~~y~~-----~~~l~~-~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G-~v~~g~~v~igyf 390 (530)
T COG0488 318 GKLVLEFENVSKGYDG-----GRLLLK-DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-TVKVGETVKIGYF 390 (530)
T ss_pred CCeeEEEeccccccCC-----Cceeec-CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc-eEEeCCceEEEEE
Confidence 3467999999999975 257888 99999999999999999999999999999999999999 998865 59999
Q ss_pred cccc--ccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 665 PQSS--WIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 665 ~Q~p--wI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
+|+- +.-+.|+-|++.=+.| .++...+..+....+..+-.. ..-..||||||.|+.||+.+.++|.+
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhccCCCE
Confidence 9987 2356689999976553 347788888888888765432 33467999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHH
Q 004004 742 YIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If~ 761 (779)
|||||||..||.++-..+-+
T Consensus 461 LiLDEPTNhLDi~s~~aLe~ 480 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEE 480 (530)
T ss_pred EEEcCCCccCCHHHHHHHHH
Confidence 99999999999999876543
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1e-21 Score=187.28 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=115.7
Q ss_pred EEEeeeEEEeccc-cccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc--C--------
Q 004004 591 IDIEAGEYAWDAR-EENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~-~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~--g-------- 659 (779)
+.++|++.++.-. ...-.-|+++ +++|+++.||++++-|||||||||||+++-|.|.|.+| +|.+. |
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~-~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G-~I~v~H~g~~vdl~~a 82 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLR-NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEG-QILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeecchhheEeeecCCEEeeeee-ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCc-eEEEEeCcchhhhhcc
Confidence 5566665444320 0012247899 99999999999999999999999999999999999999 88774 2
Q ss_pred -----------eEEEEccccc-cCCCc----HHHHh-ccCCCCCH--HHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 -----------KKAYVPQSSW-IQTGT----IRENI-LFGKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 -----------~iayV~Q~pw-I~ngT----IreNI-lfG~~~d~--~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
+|+||+|--- |..-+ +.|-. .-|-+-+. ++-...+..-.+-+-+=.|| -.+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 4899999422 11111 12222 23433332 23344555566666666665 368
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.|||++||+.|||.+.-|-+|+||||||++||+.+.+.+.+
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve 193 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHH
Confidence 99999999999999999999999999999999988776553
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=4.5e-21 Score=184.82 Aligned_cols=140 Identities=27% Similarity=0.350 Sum_probs=113.5
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEcccccc-CC----
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWI-QT---- 672 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI-~n---- 672 (779)
..+ .++|+.++|+..||+|.+|||||||.+.|.|.++|++| .|.++| .|-.+.|+|-- ||
T Consensus 28 AV~-~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG-~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 28 AVK-PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred ccc-ceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCc-eEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 456 89999999999999999999999999999999999999 999988 38899999851 22
Q ss_pred -CcHH-----HHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 673 -GTIR-----ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 673 -gTIr-----eNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
|+|- -|=-+..+...+++.+.++..+|.+|-..+ .-..||-|||||+|||||+.-+|+|+|-||
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 2222 222222222345677788888887775543 235799999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHH
Q 004004 747 PFSAVDAHTGTHLFKA 762 (779)
Q Consensus 747 p~SALDa~t~~~If~~ 762 (779)
++.+||+....+|.+-
T Consensus 176 Al~~LD~smrsQl~NL 191 (267)
T COG4167 176 ALASLDMSMRSQLINL 191 (267)
T ss_pred hhhhccHHHHHHHHHH
Confidence 9999999999998763
No 365
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.84 E-value=3e-21 Score=196.19 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=94.4
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCC--------eEEEc----------CeEEEEccccccCCCcHH
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA--------AIKVH----------GKKAYVPQSSWIQTGTIR 676 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~--------~I~i~----------g~iayV~Q~pwI~ngTIr 676 (779)
++++++++| .++|+||+|||||||+++|.|..++..|. .+... ..++||+|+|..+
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----- 88 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----- 88 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-----
Confidence 789999999 99999999999999999999988665330 23222 2589999999988
Q ss_pred HHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCcC
Q 004004 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVD 752 (779)
Q Consensus 677 eNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly----~~adI~LLDDp~SALD 752 (779)
|+.. .+++.+++++. ++-. ......||||||||++||||+. ++|++++||||+++||
T Consensus 89 ----~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 89 ----YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred ----eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 3321 24455555555 1111 2345679999999999999985 6779999999999999
Q ss_pred HHHHHHHHH
Q 004004 753 AHTGTHLFK 761 (779)
Q Consensus 753 a~t~~~If~ 761 (779)
++....+.+
T Consensus 150 ~~~~~~l~~ 158 (197)
T cd03278 150 DANVERFAR 158 (197)
T ss_pred HHHHHHHHH
Confidence 999988765
No 366
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.4e-20 Score=191.02 Aligned_cols=136 Identities=29% Similarity=0.350 Sum_probs=117.2
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEc--cccccCCCcHHHHhcc-----
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP--QSSWIQTGTIRENILF----- 681 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~--Q~pwI~ngTIreNIlf----- 681 (779)
..+|+ ||||++++||.++|+|++||||||||+.|.|-++|++| +|.++|++++.- -.-.-.+.|-||||.+
T Consensus 40 ~~aL~-disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 40 FWALK-DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred EEEec-CceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 45899 99999999999999999999999999999999999999 999999987432 2333456799999975
Q ss_pred C--CCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHH
Q 004004 682 G--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (779)
Q Consensus 682 G--~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~ 757 (779)
| +..-+++++++++-+.|.++++. | -.+.|-|.+.|++.|=|...+|||||+||.+|+-|+.=.+
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 2 22346889999999999988864 3 3689999999999999999999999999999999995443
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.9e-20 Score=192.16 Aligned_cols=139 Identities=24% Similarity=0.317 Sum_probs=86.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHH-HHHh--cc------------------ccCCCCCeEEEcC-eEEEEcc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL-SSIL--GE------------------IPRISGAAIKVHG-KKAYVPQ 666 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL-~~iL--Ge------------------~~~~~G~~I~i~g-~iayV~Q 666 (779)
.++++ ++||+|++||.++|+|++|||||||+ ..+. |. +.+..+ . +.| ..++..|
T Consensus 8 ~~~l~-~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 83 (226)
T cd03270 8 EHNLK-NVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVD-S--IEGLSPAIAID 83 (226)
T ss_pred hhccc-cceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccc-c--ccCCCceEEec
Confidence 56899 99999999999999999999999996 3322 11 011111 1 112 1233333
Q ss_pred ccc-cCC--Cc---HHHHhc-----cCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 667 SSW-IQT--GT---IRENIL-----FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 667 ~pw-I~n--gT---IreNIl-----fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
++. ..+ .+ +.+... +.....+++ .+.++.++|.+. .......+||||||||++||||+
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER-LGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHH
Confidence 332 111 12 212111 111100111 233443433221 23456778999999999999999
Q ss_pred ccCC--CEEEEeCCCCCcCHHHHHHHHHH
Q 004004 736 YSNS--DVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 736 y~~a--dI~LLDDp~SALDa~t~~~If~~ 762 (779)
+++| +++||||||++||+++.+.+.+.
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 9998 59999999999999999888764
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=2.3e-20 Score=196.74 Aligned_cols=145 Identities=26% Similarity=0.301 Sum_probs=95.7
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHh--------ccc--cCCCCCeEEE----cCeEEEEccccc-----
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL--------GEI--PRISGAAIKV----HGKKAYVPQSSW----- 669 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iL--------Ge~--~~~~G~~I~i----~g~iayV~Q~pw----- 669 (779)
...|+ |++++||.|.+++|+|+||||||||++.++ +.. .|..+ .... -..+-+|.|+|-
T Consensus 8 ~~nl~-~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~vdq~pi~~~~r 85 (261)
T cd03271 8 ENNLK-NIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH-DRIEGLEHIDKVIVIDQSPIGRTPR 85 (261)
T ss_pred hhcCC-CceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcc-cccccccccCceEEecCCcCCCCCC
Confidence 34689 999999999999999999999999999764 110 12222 1100 113455555543
Q ss_pred ------------------------------------------cCCCcHHHHhccCCCCC-HHHHHHHHHHccchHHHhhc
Q 004004 670 ------------------------------------------IQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMW 706 (779)
Q Consensus 670 ------------------------------------------I~ngTIreNIlfG~~~d-~~~y~~vl~ac~L~~di~~L 706 (779)
+.+-|+.||+-|...+. .++..++++.+
T Consensus 86 s~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v--------- 156 (261)
T cd03271 86 SNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV--------- 156 (261)
T ss_pred CcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc---------
Confidence 23334444443322211 11122222222
Q ss_pred cCCCCc-cccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 707 ADGDLS-VVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 707 p~Gd~T-~IGE~G~nLSGGQKQRIaLARAly~~---adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|... ..+....+||||||||++||||+.++ |++|||||||++||++..+.+.+ .+..+
T Consensus 157 --gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l 218 (261)
T cd03271 157 --GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRL 218 (261)
T ss_pred --CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 3333 35778899999999999999999996 79999999999999999988765 34433
No 369
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.81 E-value=2.4e-19 Score=191.31 Aligned_cols=157 Identities=27% Similarity=0.398 Sum_probs=124.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-----CCCCeEEEcC-----
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-----~~G~~I~i~g----- 659 (779)
-++++|.+.++... +....+.+ +|+|+|++||.+|+||+||||||--.++++|.++. .+| +|..+|
T Consensus 6 lL~v~nLsV~f~~~--~~~~~aVk-~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE--GGTVEAVK-GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC--CcceEeec-cceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhc
Confidence 47888888777642 23356789 99999999999999999999999999999999985 467 788777
Q ss_pred ------------eEEEEcccccc-CC--Cc----HHHHhccCCCC----CHHHHHHHHHHccchH---HHhhccCCCCcc
Q 004004 660 ------------KKAYVPQSSWI-QT--GT----IRENILFGKDM----RQSFYEEVLEGCALNQ---DIEMWADGDLSV 713 (779)
Q Consensus 660 ------------~iayV~Q~pwI-~n--gT----IreNIlfG~~~----d~~~y~~vl~ac~L~~---di~~Lp~Gd~T~ 713 (779)
+|+.++|+|-- .| -| |-|-|...+.+ -++|..+.++..++.+ -++..|
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP------ 155 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP------ 155 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC------
Confidence 59999999973 22 23 34444443333 3456666677777643 455555
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..||||||||+-||-|+..+||++|=||||.|||..+..+|.+
T Consensus 156 -----HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~ 198 (534)
T COG4172 156 -----HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD 198 (534)
T ss_pred -----cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH
Confidence 5799999999999999999999999999999999999999765
No 370
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.4e-19 Score=182.15 Aligned_cols=155 Identities=23% Similarity=0.368 Sum_probs=126.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------e
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------~ 660 (779)
.+++++++-++++ ..+++ |+||++++|+..++.|++|+||||.++.|||+++|++| +|.++| +
T Consensus 2 ~L~ie~vtK~Fg~------k~av~-~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G-~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSFGD------KKAVD-NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG-EITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhccCc------eeeec-ceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc-eEEEcCcchhhhhhhh
Confidence 4789999999875 46788 99999999999999999999999999999999999999 999999 7
Q ss_pred EEEEcccccc-CCCcHHHHhccCC---CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 661 KAYVPQSSWI-QTGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 661 iayV~Q~pwI-~ngTIreNIlfG~---~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
|+|.|.+--| ..-|+.|-+.|-. -|+.++.++= +...++++.-+.. -..+-..||-|-.|+|++--|+.
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHh
Confidence 9999999988 4689999998742 3555443332 2334454432111 12455689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHL 759 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~I 759 (779)
.+|+++|||||||+||+.+.+.+
T Consensus 147 HePeLlILDEPFSGLDPVN~elL 169 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELL 169 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHH
Confidence 99999999999999999877543
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=4.5e-20 Score=193.57 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=93.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcccc----------------CCCCCeEEEcCeEEEEccccccC------CCcHH----
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIP----------------RISGAAIKVHGKKAYVPQSSWIQ------TGTIR---- 676 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~----------------~~~G~~I~i~g~iayV~Q~pwI~------ngTIr---- 676 (779)
|++++|+||+|||||||+++|.+.+. +.+| .....+.+.++.|++.-+ +-+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSG-PSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCC-CCCceEEEEEEEEcCCCccCCCCCEEEEEEEEE
Confidence 88999999999999999999985432 2222 111122334444443211 11222
Q ss_pred ---HHhcc-CCCCCHHHHHHHHHHccchHHH--hhccCCCCcc-------ccCCCCCCChHHHHHHHHHHHHc----cCC
Q 004004 677 ---ENILF-GKDMRQSFYEEVLEGCALNQDI--EMWADGDLSV-------VGERGINLSGGQKQRIQLARAVY----SNS 739 (779)
Q Consensus 677 ---eNIlf-G~~~d~~~y~~vl~ac~L~~di--~~Lp~Gd~T~-------IGE~G~nLSGGQKQRIaLARAly----~~a 739 (779)
+|+.+ ++.++.+++...++.+++.++- ...|+|..++ ..+++.+||||||||++||||++ ++|
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~ 181 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPA 181 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCC
Confidence 33332 2345667778888877765421 1134444333 35788999999999999999996 468
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH
Q 004004 740 DVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If~~ 762 (779)
+++||||||++||+++.+.+.+.
T Consensus 182 ~illlDEp~~~ld~~~~~~~~~~ 204 (243)
T cd03272 182 PFYLFDEIDAALDAQYRTAVANM 204 (243)
T ss_pred CEEEEECCccCCCHHHHHHHHHH
Confidence 99999999999999999988763
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=199.16 Aligned_cols=156 Identities=24% Similarity=0.302 Sum_probs=133.4
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc--CeEEEEc
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVP 665 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~--g~iayV~ 665 (779)
...|.++|++|.|++ + ..+++ ++||-|.+++.+|+|||+|+||||||+++.|+..|+.| .+.-. .++++-.
T Consensus 387 ~pvi~~~nv~F~y~~---~--~~iy~-~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G-~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD---N--PMIYK-KLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG-MVSRHSHNKLPRYN 459 (614)
T ss_pred CCeEEEeccccCCCC---c--chhhh-hhhcccCcccceeEecCCCCchhhhHHHHhhccccccc-cccccccccchhhh
Confidence 356899999999986 2 25778 99999999999999999999999999999999999999 77543 3577767
Q ss_pred cccc---cCCCcHHHHhc--cCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 004004 666 QSSW---IQTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (779)
Q Consensus 666 Q~pw---I~ngTIreNIl--fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ad 740 (779)
|.-- -.+.|.-||+. |...-+.+.++.++..|+|..|.+.-|- .+||+|||.||..||..++.|.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCc
Confidence 7543 46778888885 5555677889999999999988876663 5899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHH
Q 004004 741 VYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 741 I~LLDDp~SALDa~t~~~If 760 (779)
|++|||||++||..+-..+-
T Consensus 530 lLlLDEPtnhLDi~tid~la 549 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALA 549 (614)
T ss_pred EEEecCCCcCCCchhHHHHH
Confidence 99999999999999876653
No 373
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=8.4e-19 Score=167.93 Aligned_cols=167 Identities=20% Similarity=0.348 Sum_probs=124.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
-+++++.+..|.+ ..-.+ |++|++.|||..+|||+|||||||||+||.+-+.|+.| +|.+.-
T Consensus 6 LL~V~~lsk~Yg~------~~gc~-~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYGP------GKGCR-DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhCC------CcCcc-ccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhh
Confidence 4678888888875 33466 99999999999999999999999999999999999999 887642
Q ss_pred ------------eEEEEccccccCCCcHHHHhccCCCCC-------HHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 660 ------------~iayV~Q~pwI~ngTIreNIlfG~~~d-------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
.-++|.|+|- +-+|-.+--|...- ...|-++-..+ .+.++.. +=+.+.|.+.-..
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~---DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a--~~WL~~V-EI~~~RiDD~Prt 151 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPR---DGLRMQVSAGGNIGERLMAIGARHYGNIRAEA--QDWLEEV-EIDLDRIDDLPRT 151 (258)
T ss_pred hchHHHHHHhhhccceeecCcc---ccceeeeccCCccchhHHhhhhhhhhhHHHHH--HHHHHhc-ccCcccccCcccc
Confidence 1589999994 22222222221111 12233322222 1233332 2355677788899
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHH
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQL 771 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~ 771 (779)
.|||.+||++|||-+...|.++.+||||-+||..+..++.+ +++|+..++
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l 201 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVREL 201 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhc
Confidence 99999999999999999999999999999999999999875 566666554
No 374
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=2.4e-19 Score=174.99 Aligned_cols=150 Identities=19% Similarity=0.319 Sum_probs=126.5
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|++.+++. -..++ ++||++.+||+-+|+||+|+||||++..|.|-.+|+.| ++..+|.
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln-~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G-~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALN-DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG-EVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEcc------eeeee-eeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcc-eEEEcCchhhccCCH
Confidence 35788999998875 35788 99999999999999999999999999999999999999 9999882
Q ss_pred -------EEEEccccccCC-CcHHHHhccC-------------C--CCCHHHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 661 -------KAYVPQSSWIQT-GTIRENILFG-------------K--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 661 -------iayV~Q~pwI~n-gTIreNIlfG-------------~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
|+--.|.|-+|. -|++||+-.. + +.++.++++++...+|.+--. .-
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~ 144 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RL 144 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hh
Confidence 678899999875 6999998532 1 123458889999888865322 22
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCc-CHHHHH
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-DAHTGT 757 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SAL-Da~t~~ 757 (779)
..+||-||||++.|+--+.++|++++||||.+++ |++|++
T Consensus 145 A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ 185 (249)
T COG4674 145 AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185 (249)
T ss_pred hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHH
Confidence 4689999999999999999999999999999998 677765
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.78 E-value=2.9e-19 Score=183.98 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=105.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEee-CCcEEEEEcCCCCChhHHHHHHhcc-ccCCCCCeEEE----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIM-KGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKV---------- 657 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~-~G~~vaIvG~sGSGKSTLL~~iLGe-~~~~~G~~I~i---------- 657 (779)
.|+++|.. +|.. . + +++|+.. +|+.++|+||+|||||||+++|.+. +.+..+ ....
T Consensus 5 ~i~l~nf~-~y~~---~------~-~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~-~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFRE---E------Q-VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPR-YGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcCC---c------e-EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccc-cccchhHHHHhcCC
Confidence 47788876 5543 1 2 5566543 5899999999999999999999953 333333 2221
Q ss_pred --cCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCC-CCccccCCCCCCChHHHHHHHHHHH
Q 004004 658 --HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADG-DLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 658 --~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~G-d~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
...+++++|++.-. ..++.++ ..+.+.+.+.+ . ++.| .++.+...+.+||||||||++||||
T Consensus 73 ~~~~~v~~~f~~~~~~----~~~~r~~-gl~~~~~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~a 137 (213)
T cd03279 73 EDTAEVSFTFQLGGKK----YRVERSR-GLDYDQFTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLA 137 (213)
T ss_pred CccEEEEEEEEECCeE----EEEEEec-CCCHHHHHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHH
Confidence 12588898888432 2233232 33344333322 0 2222 3445567788999999999999999
Q ss_pred Hcc----------CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 735 VYS----------NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 735 ly~----------~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
+.. +|+++||||||++||+.+.+.+.+ .+..+-++ -++.|+|
T Consensus 138 l~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~-~l~~~~~~~~tii~itH 191 (213)
T cd03279 138 LALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVAT-ALELIRTENRMVGVISH 191 (213)
T ss_pred HHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEEC
Confidence 974 679999999999999999988654 45444321 3444555
No 376
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.78 E-value=4.9e-19 Score=181.03 Aligned_cols=121 Identities=22% Similarity=0.303 Sum_probs=95.4
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHH----hccccCCCCCeEEE----------cCeEEEEcccc-----ccC-CCcH
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSI----LGEIPRISGAAIKV----------HGKKAYVPQSS-----WIQ-TGTI 675 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~i----LGe~~~~~G~~I~i----------~g~iayV~Q~p-----wI~-ngTI 675 (779)
.++++.+| +++|+||+|||||||+.+| .|..++.+| .+.. ...+++++|++ -+. +-|+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~-~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSK-GGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccc-cccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 45667788 9999999999999999999 499988877 4431 12589999998 222 2399
Q ss_pred HHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCC
Q 004004 676 RENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR------IQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 676 reNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR------IaLARAly~~adI~LLDDp~S 749 (779)
.||+.++. +++.++.+ .+...+|||||||| ++||||+.++|++++||||++
T Consensus 94 ~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 99998863 23333333 45567999999996 799999999999999999999
Q ss_pred CcCHHHHH-HHHH
Q 004004 750 AVDAHTGT-HLFK 761 (779)
Q Consensus 750 ALDa~t~~-~If~ 761 (779)
+||+++.. .+.+
T Consensus 151 ~LD~~~~~~~l~~ 163 (204)
T cd03240 151 NLDEENIEESLAE 163 (204)
T ss_pred ccCHHHHHHHHHH
Confidence 99999988 6554
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=2.8e-19 Score=188.66 Aligned_cols=139 Identities=22% Similarity=0.275 Sum_probs=101.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc---------------C-eEEEEcccccc----------CCCcHH
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH---------------G-KKAYVPQSSWI----------QTGTIR 676 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~---------------g-~iayV~Q~pwI----------~ngTIr 676 (779)
..+++||||+|||||||+.+|.+.+.+..|+++... + ++.++.|++-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 558999999999999999999998876533244332 1 68899998632 256888
Q ss_pred HHhccCCC---------CCHHHHHHHHHHccchHH-Hh-hccCCCC-------ccccCCCCCCChHHHHHHHHHHHHc--
Q 004004 677 ENILFGKD---------MRQSFYEEVLEGCALNQD-IE-MWADGDL-------SVVGERGINLSGGQKQRIQLARAVY-- 736 (779)
Q Consensus 677 eNIlfG~~---------~d~~~y~~vl~ac~L~~d-i~-~Lp~Gd~-------T~IGE~G~nLSGGQKQRIaLARAly-- 736 (779)
+||..+.. ...+++.+.++.+++..| .. ..++|.= ....+...+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866532 234577788888887521 00 0111111 1234567789999999999999997
Q ss_pred --cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 --SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 --~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++|+++||||||++||+.+.+++++
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~ 211 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGR 211 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 6889999999999999999998876
No 378
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=5e-19 Score=186.34 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=110.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc--------C------------eEEEEcccc--ccCCCcHHHHhc--
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--------G------------KKAYVPQSS--WIQTGTIRENIL-- 680 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~--------g------------~iayV~Q~p--wI~ngTIreNIl-- 680 (779)
.++|+||+|||||||+.+|.+.+.+..| ++... | .+.|..|++ .++..+++++-.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~-~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSS-HLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcc-cccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 9999999999999999999988866555 44321 1 133444432 234444444321
Q ss_pred --cCCCCCHHHHHHHHHHccchHHHhh--ccCCCCccccCCC---------CCCChHHHHHHHHHHHHcc----CCCEEE
Q 004004 681 --FGKDMRQSFYEEVLEGCALNQDIEM--WADGDLSVVGERG---------INLSGGQKQRIQLARAVYS----NSDVYI 743 (779)
Q Consensus 681 --fG~~~d~~~y~~vl~ac~L~~di~~--Lp~Gd~T~IGE~G---------~nLSGGQKQRIaLARAly~----~adI~L 743 (779)
-|++.+++.|++.++.|+++.|... .++|+-+.+.+.. .+||||||||++||||+.. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1456788999999999999866443 4788888887754 7899999999999999975 599999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHhHHHH--HHHhHhcc
Q 004004 744 FDDPFSAVDAHTGTHLFKARTFSLFH--QLLFSINH 777 (779)
Q Consensus 744 LDDp~SALDa~t~~~If~~~i~g~L~--~~~~~~~~ 777 (779)
|||||++||.....++.+ .+....+ ..++.|+|
T Consensus 183 lDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH 217 (247)
T cd03275 183 LDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISL 217 (247)
T ss_pred EecccccCCHHHHHHHHH-HHHHhccCCcEEEEEEC
Confidence 999999999999988765 4544433 13455555
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.9e-17 Score=164.96 Aligned_cols=157 Identities=23% Similarity=0.259 Sum_probs=123.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc--ccCCCCCeEEEcCe--------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK-------- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe--~~~~~G~~I~i~g~-------- 660 (779)
++++|++.+-++ .+++|+ ++||+|++||..||.||+|||||||.++|+|. |.+++| +|..+|.
T Consensus 4 L~I~dLhv~v~~-----~keILk-gvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G-~I~~~GedI~~l~~~ 76 (251)
T COG0396 4 LEIKDLHVEVEG-----KKEILK-GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG-EILFDGEDILELSPD 76 (251)
T ss_pred eEEeeeEEEecC-----chhhhc-CcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc-eEEECCcccccCCHh
Confidence 678888877653 148999 99999999999999999999999999999996 589999 9999983
Q ss_pred ------EEEEccccccCCC-cHHHHhccC------C-C---CCHHHHHHHHHHccchHHHhhccCCCCccccCCC--CCC
Q 004004 661 ------KAYVPQSSWIQTG-TIRENILFG------K-D---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG--INL 721 (779)
Q Consensus 661 ------iayV~Q~pwI~ng-TIreNIlfG------~-~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G--~nL 721 (779)
+-...|.|-=+.| |+++=+.-+ . + -..++.++.++..++++++. +|+ ..+
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l-----------~R~vN~GF 145 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL-----------ERYVNEGF 145 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh-----------hcccCCCc
Confidence 6788999985554 566655422 1 1 11345566677777776432 333 359
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|||+|.|.-|+-++.-+|++.|||||=|+||...-+-|-+ .|..
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~-~i~~ 189 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAE-GINA 189 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999987765543 3433
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=3.7e-18 Score=175.49 Aligned_cols=148 Identities=19% Similarity=0.189 Sum_probs=99.2
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI 670 (779)
++++|.. +|.. ..++. ++++ +.++|+||+||||||++++|...+-.... ... .++++|++|+...
T Consensus 6 l~l~nfk-~~~~------~~~l~-~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~-~~~-~~~i~~~~~~~~~ 70 (212)
T cd03274 6 LVLENFK-SYAG------EQVIG-PFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRAS-KMR-QKKLSDLIHNSAG 70 (212)
T ss_pred EEEECcc-cCCC------Ceeec-cCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHH-Hhh-hhhHHHHhcCCCC
Confidence 5566644 4432 34676 7766 89999999999999999999822111000 111 2468899998876
Q ss_pred CCC-cHHHHhccCCCCC-HHHHHHHHHHc-------------cchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 671 QTG-TIRENILFGKDMR-QSFYEEVLEGC-------------ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 671 ~ng-TIreNIlfG~~~d-~~~y~~vl~ac-------------~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
... |.++++.+-..+. .+ .++.. +-..++..+|++.++.+ ..||||||||++||||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~----~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al 142 (212)
T cd03274 71 HPNLDSCSVEVHFQEIIDKP----LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVF 142 (212)
T ss_pred CCCCceEEEEEEEEeCCCHH----HHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHH
Confidence 553 7888876543321 11 11110 11113445677777654 47999999999999999
Q ss_pred c----cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 736 Y----SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 736 y----~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+ ++|++++|||||+++|+++.+.+.+
T Consensus 143 ~~~~~~~p~ililDEPt~gLD~~~~~~l~~ 172 (212)
T cd03274 143 ALHHYKPTPLYVMDEIDAALDFRNVSIVAN 172 (212)
T ss_pred HhcccCCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 6 3589999999999999999987654
No 381
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=1.9e-17 Score=198.89 Aligned_cols=144 Identities=26% Similarity=0.415 Sum_probs=121.3
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc--CCCCCeEEEcC----------eEEEEcccc-ccCCCc
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG----------KKAYVPQSS-WIQTGT 674 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~--~~~G~~I~i~g----------~iayV~Q~p-wI~ngT 674 (779)
....|+ |++=-++||.++|+.|+||+||||||+.|.|-.. ..+| .|.++| .+|||.|+. ++-.-|
T Consensus 803 ~~qLL~-~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~G-di~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 803 TRQLLN-NVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEG-DILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ceEhhh-cCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEe-EEEECCeeCchhhhccccceeecccccCcccc
Confidence 356788 9999999999999999999999999999998643 4567 888998 489999865 589999
Q ss_pred HHHHhccCC------CC-CHHH---HHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC-CEEE
Q 004004 675 IRENILFGK------DM-RQSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-DVYI 743 (779)
Q Consensus 675 IreNIlfG~------~~-d~~~---y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a-dI~L 743 (779)
|||-+.|.. +. ++++ .++|++..+|++-= |..||.-|..||..||.|+.||=-|..|| .|+.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 999999852 22 2333 46788888776432 46799999999999999999999999999 9999
Q ss_pred EeCCCCCcCHHHHHHHH
Q 004004 744 FDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 744 LDDp~SALDa~t~~~If 760 (779)
||||||+||++++..|.
T Consensus 954 LDEPTSGLDsqaA~~i~ 970 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVM 970 (1391)
T ss_pred ecCCCCCccHHHHHHHH
Confidence 99999999999998754
No 382
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.69 E-value=3.4e-17 Score=163.78 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=79.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeE--EEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL 699 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~i--ayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L 699 (779)
++...+|+||+|||||+++.+|.=-+--.+- ........ .+-...++-.+++|+ |.|.
T Consensus 21 ~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~--~~f~----------------- 80 (178)
T cd03239 21 SNSFNAIVGPNGSGKSNIVDAICFVLGGKAA-KLRRGSLLFLAGGGVKAGINSASVE--ITFD----------------- 80 (178)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCcccc-cccCcchhhhcccccCCCCceEEEE--EEEE-----------------
Confidence 3338999999999999999998532211110 00000000 111122222222222 2222
Q ss_pred hHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 700 ~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl----y~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
.++..+|+|+.|+| ||||||||++||||+ +++|+++++|||++++|++..+.+++ ++....
T Consensus 81 -~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~ 145 (178)
T cd03239 81 -KSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMA 145 (178)
T ss_pred -CceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHH
Confidence 22788999999999 999999999999998 58999999999999999999988775 454443
No 383
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.69 E-value=8.3e-17 Score=196.89 Aligned_cols=162 Identities=23% Similarity=0.342 Sum_probs=133.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
.++..+|.+..|+. . ....+ ++++.|++||+.++-|++||||||.++.|.|+.+|++| ++.++|
T Consensus 563 ~~~~~~~L~k~y~~---~--~~Av~-~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G-~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG---K--DGAVR-GLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSG-EALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecc---h--hhhhc-ceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcc-eEEEecCccccccch
Confidence 46788999999976 2 12778 99999999999999999999999999999999999999 998866
Q ss_pred -----eEEEEcccccc-CCCcHHHHhcc-----CCC-CC-HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWI-QTGTIRENILF-----GKD-MR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI-~ngTIreNIlf-----G~~-~d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.+|||||+--+ ..-|.||.+.+ |-+ -| ++..++.+++.+|.+.... .-.++|||||
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~k 704 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGNK 704 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcch
Confidence 28999997665 66899999965 212 11 2346777777777765542 1468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
.|++.|-|+..+|++++||||++++|++..+++++ .|...-+
T Consensus 705 RkLs~aialig~p~vi~LDEPstGmDP~arr~lW~-ii~~~~k 746 (885)
T KOG0059|consen 705 RRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD-IIARLRK 746 (885)
T ss_pred hhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHh
Confidence 99999999999999999999999999999999986 3444444
No 384
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=2.9e-17 Score=168.12 Aligned_cols=136 Identities=26% Similarity=0.335 Sum_probs=101.4
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------------EEEE----ccccccCCC
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYV----PQSSWIQTG 673 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------------iayV----~Q~pwI~ng 673 (779)
+..+ ||||+||||+.++.+|++|+||||+|+.|.|...|++| .|.++|. ++|| .|.-|=.+
T Consensus 38 ~AVq-disf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 38 EAVQ-DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhh-eeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 4677 99999999999999999999999999999999999999 9999994 2222 23333222
Q ss_pred cHHHHhccCC---CCCHHHHHH----HHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 674 TIRENILFGK---DMRQSFYEE----VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 674 TIreNIlfG~---~~d~~~y~~----vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
+.|-+..-+ +.++++|++ ..+.-+|++. +-.+-..||=|||-|..||-||+++|+|++|||
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~-----------lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-----------LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh-----------hhhhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 333332111 223333333 3333344333 334567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHH
Q 004004 747 PFSAVDAHTGTHLF 760 (779)
Q Consensus 747 p~SALDa~t~~~If 760 (779)
||=+||..+..+|-
T Consensus 183 pTvgLDV~aq~~ir 196 (325)
T COG4586 183 PTVGLDVNAQANIR 196 (325)
T ss_pred CccCcchhHHHHHH
Confidence 99999998887764
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.66 E-value=1.4e-16 Score=193.14 Aligned_cols=54 Identities=30% Similarity=0.534 Sum_probs=47.5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~a---dI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
..+....+||||||||++||||+.++| ++|||||||++||.++...+.+ .+..+
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l 879 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRL 879 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 367888999999999999999999999 9999999999999999988765 34443
No 386
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.6e-16 Score=166.11 Aligned_cols=153 Identities=24% Similarity=0.376 Sum_probs=114.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q 666 (779)
..+-+.||+|.|+. ..|.++ +++|-|.--+.+|||||+|.||||||++|+|.++|+.| ..+-+. +|++-.|
T Consensus 585 PvLGlH~VtFgy~g-----qkpLFk-kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G-E~RKnhrL~iG~FdQ 657 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG-----QKPLFK-KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG-ELRKNHRLRIGWFDQ 657 (807)
T ss_pred CeeecccccccCCC-----CCchhh-cccccccccceeEEECCCCccHHHHHHHHhcCCCCCcc-hhhccceeeeechhh
Confidence 45778999999976 467888 99999999999999999999999999999999999999 776554 5888777
Q ss_pred ccc---cCCCcHHHHh--ccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 667 SSW---IQTGTIRENI--LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 667 ~pw---I~ngTIreNI--lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
..- =-..|--|-+ .|..||.+ -++.+-.-+|..- -+|. +-..||||||.|++||---++.|||
T Consensus 658 h~~E~L~~Eetp~EyLqr~FNlpyq~--ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~PDv 725 (807)
T KOG0066|consen 658 HANEALNGEETPVEYLQRKFNLPYQE--ARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGPDV 725 (807)
T ss_pred hhHHhhccccCHHHHHHHhcCCChHH--HHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCCCE
Confidence 653 1223333444 24444422 2333333344321 1121 2357999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHH
Q 004004 742 YIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 742 ~LLDDp~SALDa~t~~~If 760 (779)
+||||||.+||.++-..+-
T Consensus 726 lILDEPTNNLDIESIDALa 744 (807)
T KOG0066|consen 726 LILDEPTNNLDIESIDALA 744 (807)
T ss_pred EEecCCCCCcchhhHHHHH
Confidence 9999999999998876553
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.65 E-value=7.5e-16 Score=166.91 Aligned_cols=135 Identities=24% Similarity=0.379 Sum_probs=106.0
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccc-cCCCcHHHHhccCC--CCCHHHHH-HHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW-IQTGTIRENILFGK--DMRQSFYE-EVL 694 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pw-I~ngTIreNIlfG~--~~d~~~y~-~vl 694 (779)
+|..||.++++||+|-||||+.+.|.|++.|++| . ..+=+++|=||--- -++|||++=+.--. .+...+|+ +++
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg-~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~ 440 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG-S-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV 440 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCC-C-CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhc
Confidence 4567899999999999999999999999999999 6 45558999999433 49999999775322 25555554 677
Q ss_pred HHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+--.|++-+++ +-.+||||+-||+|+|-||-++||+||||||.+-||.+-. -+-.++|+..
T Consensus 441 ~pl~l~~i~e~-----------~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR-~~vakvIRR~ 501 (591)
T COG1245 441 KPLNLEDLLER-----------PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR-IIVAKVIRRF 501 (591)
T ss_pred CccchHHHHhc-----------ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH-HHHHHHHHHH
Confidence 77777665543 3467999999999999999999999999999999998643 2333444443
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.64 E-value=7e-16 Score=157.00 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=85.7
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCC-----CC----eEE---EcCeEEEEccccccCCCcHHHHhccC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GA----AIK---VHGKKAYVPQSSWIQTGTIRENILFG 682 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~-----G~----~I~---i~g~iayV~Q~pwI~ngTIreNIlfG 682 (779)
+.++++.+| +.+|+||+|||||||+.+|...+.... |. -+. -.+.+.++.|+.-+.. |
T Consensus 14 ~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~---- 83 (198)
T cd03276 14 HLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N---- 83 (198)
T ss_pred eeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C----
Confidence 566777776 789999999999999999874332211 20 000 0124666666654333 2
Q ss_pred CCC--CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHH
Q 004004 683 KDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 683 ~~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl----y~~adI~LLDDp~SALDa~t~ 756 (779)
... ++++.+++++. .....++..+||||||||++||||+ +++|+++||||||+++|..+.
T Consensus 84 ~~~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 84 PLCVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred cCCHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 111 12333333333 1112345678999999999999999 699999999999999999998
Q ss_pred HHHHHHHHhHHH
Q 004004 757 THLFKARTFSLF 768 (779)
Q Consensus 757 ~~If~~~i~g~L 768 (779)
..+.+ .+....
T Consensus 150 ~~~~~-~l~~~~ 160 (198)
T cd03276 150 KISTD-LLVKEA 160 (198)
T ss_pred HHHHH-HHHHHH
Confidence 87766 454443
No 389
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=1.2e-15 Score=192.43 Aligned_cols=53 Identities=28% Similarity=0.476 Sum_probs=46.6
Q ss_pred CCCcc-ccCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 709 GDLSV-VGERGINLSGGQKQRIQLARAVY---SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 709 Gd~T~-IGE~G~nLSGGQKQRIaLARAly---~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|.... .+....+||||||||++||||+. ++|++|||||||++||+++.+.+++
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~ 853 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY 853 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 44443 57778899999999999999998 6999999999999999999988775
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=1.3e-15 Score=168.46 Aligned_cols=160 Identities=22% Similarity=0.366 Sum_probs=102.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..|.++|.++++.. .+.++ |..|++.+|++++++|++||||||+|++|.|--.|..- ++.+ ...+|+.
T Consensus 74 ~dvk~~sls~s~~g------~~l~k-d~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-~~d~----y~ls~e~ 141 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG------VELIK-DVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-HIDF----YLLSREI 141 (614)
T ss_pred ccceeeeeeeccCC------ceeee-eeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-ccch----hhhcccC
Confidence 46899999999875 56788 99999999999999999999999999999987777665 4432 2222221
Q ss_pred ccCCCc-HHHHhccCCCCCHHHHH----HHHHHcc----------------chHH-----H-hhc-cCCCC-ccccCCCC
Q 004004 669 WIQTGT-IRENILFGKDMRQSFYE----EVLEGCA----------------LNQD-----I-EMW-ADGDL-SVVGERGI 719 (779)
Q Consensus 669 wI~ngT-IreNIlfG~~~d~~~y~----~vl~ac~----------------L~~d-----i-~~L-p~Gd~-T~IGE~G~ 719 (779)
--=..+ ++.-+.+.. -...+|+ +...+|. ++.| + +.| ..|.. ...-..-.
T Consensus 142 ~ps~~~av~~v~~~~~-~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 142 EPSEKQAVQAVVMETD-HERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred CCchHHHHHHHhhhhH-HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 110111 111111110 0011111 1111110 0000 0 001 11222 22233567
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||||-|++|||||.++|+++||||||..||.++-..+-+
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee 262 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE 262 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH
Confidence 899999999999999999999999999999999998877543
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.1e-15 Score=168.10 Aligned_cols=152 Identities=24% Similarity=0.444 Sum_probs=106.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc---cccCCCCCeEEEcCeEEEEc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKKAYVP 665 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG---e~~~~~G~~I~i~g~iayV~ 665 (779)
..|.++|.+.+|.. +..|+ +-++++..|-..++||++|+||||||++|.. ..-|++- + +.|.--..-
T Consensus 79 ~Di~~~~fdLa~G~------k~LL~-~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq-E--~~g~~t~~~ 148 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG------KILLN-KANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ-E--VRGDDTEAL 148 (582)
T ss_pred cceeeeeeeeeecc------hhhhc-CCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh-h--eeccchHHH
Confidence 46888888888865 56788 9999999999999999999999999999997 1111111 1 112111111
Q ss_pred cccccCCCcHHHHhccCCC-C----C-HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 666 QSSWIQTGTIRENILFGKD-M----R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 666 Q~pwI~ngTIreNIlfG~~-~----d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
|+. +-.+|-|.-.+.-.+ . + ++-|.++++--+..++.+..|- ..||||=|-|++||||+.++|
T Consensus 149 ~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCC
Confidence 111 122222322222110 0 1 2334557777788888887774 469999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHH
Q 004004 740 DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If~ 761 (779)
||+||||||.-||.+.-..+-+
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~ 239 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLEN 239 (582)
T ss_pred CEEeecCCcccchhHHHHHHHH
Confidence 9999999999999998887643
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.2e-15 Score=167.81 Aligned_cols=143 Identities=24% Similarity=0.450 Sum_probs=114.5
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------------EEEEccc----cccCC
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------------KAYVPQS----SWIQT 672 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------------iayV~Q~----pwI~n 672 (779)
.++ |++|++++||.++|.|-+|||+|=|+.+|.|.-++.+| +|.++|+ ++|||-| --+..
T Consensus 274 ~~~-dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G-~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVR-DVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG-EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred cee-CceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc-eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 366 99999999999999999999999999999998888899 9999995 8999974 45788
Q ss_pred CcHHHHhccCC--------CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 673 GTIRENILFGK--------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 673 gTIreNIlfG~--------~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
.+|++||.+.. .+|..+-++..+. ..++++.=..+.++.+ .+||||-+|++.|||.++.+|+|+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEE
Confidence 99999998761 1233332222222 2233333234444444 57999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHH
Q 004004 745 DDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 745 DDp~SALDa~t~~~If~ 761 (779)
||||-++|.-+-..||+
T Consensus 426 DEPTRGIDVGAK~eIy~ 442 (500)
T COG1129 426 DEPTRGIDVGAKAEIYR 442 (500)
T ss_pred CCCCcCcccchHHHHHH
Confidence 99999999999999986
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=8.3e-15 Score=177.55 Aligned_cols=49 Identities=31% Similarity=0.578 Sum_probs=44.8
Q ss_pred cccCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYS---NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~---~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..+....+||||||||++||||+.+ +|++|||||||++||++..+.+.+
T Consensus 821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~ 872 (924)
T TIGR00630 821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE 872 (924)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 3678889999999999999999997 599999999999999999988765
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=5.9e-15 Score=162.43 Aligned_cols=155 Identities=21% Similarity=0.317 Sum_probs=124.7
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEc
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~ 665 (779)
...+++.+++|.|++ +. .+.+. +.++.+.--+++++||+.|.||||+++.+.|+..|..| .+.+.+ +++|-.
T Consensus 360 ~p~l~i~~V~f~y~p---~~-y~~~~-~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rg-i~~~~~r~ri~~f~ 433 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP---SE-YQWRK-QLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRG-IVGRHPRLRIKYFA 433 (582)
T ss_pred CCeeEEEeeeccCCC---cc-hhhhh-ccCCccchhhhhheeccCchhHHHHHHHHhccCCcccc-eeeecccceecchh
Confidence 356899999999987 32 15666 99999999999999999999999999999999999999 888776 689999
Q ss_pred cccccC-CCcHHHHhc----c-CCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 666 QSSWIQ-TGTIRENIL----F-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 666 Q~pwI~-ngTIreNIl----f-G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
|...=+ +-.+.+==. | |+ .+++|++-+..-+|..++..-+ -..||||||-|+++|-+...+|
T Consensus 434 Qhhvd~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~P 501 (582)
T KOG0062|consen 434 QHHVDFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNP 501 (582)
T ss_pred HhhhhHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCC
Confidence 976432 111111111 1 33 5889999999998888876422 1469999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHH
Q 004004 740 DVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 740 dI~LLDDp~SALDa~t~~~If 760 (779)
.+|+|||||.-||.++-..+-
T Consensus 502 hlLVLDEPTNhLD~dsl~AL~ 522 (582)
T KOG0062|consen 502 HLLVLDEPTNHLDRDSLGALA 522 (582)
T ss_pred cEEEecCCCccccHHHHHHHH
Confidence 999999999999998876653
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.48 E-value=5.5e-14 Score=143.33 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred CCcEEeeCCc-EEEEEcCCCCChhHHHHHHh--------ccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCC
Q 004004 615 TDKMKIMKGS-KVAVCGSVGSGKSSLLSSIL--------GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDM 685 (779)
Q Consensus 615 ~inl~I~~G~-~vaIvG~sGSGKSTLL~~iL--------Ge~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~ 685 (779)
++|+++++|+ .++|+||+|||||||++.|. |.+.|... .+ .++|+.|.-- .+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-~~----~~~~~~~~~~----------~l---- 79 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-GS----SLPVFENIFA----------DI---- 79 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-cc----cCcCccEEEE----------ec----
Confidence 7799999996 69999999999999999988 43333222 11 2333333310 00
Q ss_pred CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHh
Q 004004 686 RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765 (779)
Q Consensus 686 d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~ 765 (779)
|++..+.++-.++|+|+|||..+++++ .+|+++++|||++++|+.+...+....+.
T Consensus 80 -----------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 80 -----------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred -----------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 111122334468999999999999995 89999999999999999999988776665
Q ss_pred HH
Q 004004 766 SL 767 (779)
Q Consensus 766 g~ 767 (779)
.+
T Consensus 136 ~l 137 (200)
T cd03280 136 EL 137 (200)
T ss_pred HH
Confidence 54
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.48 E-value=1.4e-13 Score=135.61 Aligned_cols=155 Identities=22% Similarity=0.382 Sum_probs=115.7
Q ss_pred CCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeE-----
Q 004004 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----- 661 (779)
Q Consensus 587 ~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~i----- 661 (779)
.+.+|++.+..|+|+. ..|..- |+|+++|+|+...+||.+||||||||+.+.|---...| .|.+.|+-
T Consensus 10 ~~~aievsgl~f~y~~-----~dP~~~-Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~-~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKV-----SDPIFF-DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG-VVQVLGRSAFHDT 82 (291)
T ss_pred ccceEEEeccEEeccc-----CCceEE-EEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCC-eEEEcCcCccccc
Confidence 3568999999999986 358888 99999999999999999999999999999998777677 88887742
Q ss_pred --------EEEc----------cccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 662 --------AYVP----------QSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 662 --------ayV~----------Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.|.. -+.-||-+-=.+-.+||-. .|.+|-++.++.-.+ |+. =|=..+|
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDI--dl~-----------WRmHkvS 149 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDI--DLR-----------WRMHKVS 149 (291)
T ss_pred cccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheec--cce-----------EEEeecc
Confidence 2221 1222332333344555543 234555555554422 222 2446899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-|||.|++|+-.+++.=+++||||.|--||.-....+.+
T Consensus 150 DGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe 188 (291)
T KOG2355|consen 150 DGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE 188 (291)
T ss_pred ccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH
Confidence 999999999999999999999999999999877776543
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.47 E-value=5.1e-14 Score=144.91 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=83.3
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC-----C----eEEEcC----eEEEEcc-ccccCCCcHHHHhc
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-----A----AIKVHG----KKAYVPQ-SSWIQTGTIRENIL 680 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G-----~----~I~i~g----~iayV~Q-~pwI~ngTIreNIl 680 (779)
+..+++.+| +.+|+|++|||||||+.+|.-.+-.... . .+. .| .+-...+ +++- =..+|+.
T Consensus 16 ~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~-~g~~~~~v~~~~~~~~~~---~~~~n~~ 90 (213)
T cd03277 16 ETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVK-RGCDEGTIEIELYGNPGN---IQVDNLC 90 (213)
T ss_pred eeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhh-CCCCcEEEEEEEEeCCCc---cccCCce
Confidence 444555454 6789999999999999988644321110 0 011 11 0110000 1110 0223333
Q ss_pred cCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH----HccCCCEEEEeCCCCCcCHHHH
Q 004004 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA----VYSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA----ly~~adI~LLDDp~SALDa~t~ 756 (779)
+ ..++++..+....... +-+..+|.+++.. ..+...||||||||+.+|++ +..+|+++|+||||++||+.+.
T Consensus 91 ~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~ 166 (213)
T cd03277 91 Q--FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNE 166 (213)
T ss_pred E--EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHH
Confidence 2 1234444444333222 3345667666543 55778999999999887755 4589999999999999999999
Q ss_pred HHHHHH
Q 004004 757 THLFKA 762 (779)
Q Consensus 757 ~~If~~ 762 (779)
+.+++.
T Consensus 167 ~~i~~~ 172 (213)
T cd03277 167 RKVFDM 172 (213)
T ss_pred HHHHHH
Confidence 987754
No 398
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=7.9e-13 Score=145.98 Aligned_cols=167 Identities=23% Similarity=0.348 Sum_probs=131.0
Q ss_pred CCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------
Q 004004 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------ 660 (779)
Q Consensus 587 ~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------ 660 (779)
.+..++++|++..=+. +.+.++ ++||+|++||+++|.|-.|-|-|-|+.+|.|+.++.+| +|.++|+
T Consensus 254 g~~vL~V~~L~v~~~~-----~~~~v~-~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G-~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-----GVTAVK-DVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG-RILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecCC-----CCceee-eeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCc-eEEECCEeccccC
Confidence 3456888888765332 245688 99999999999999999999999999999999998899 9999883
Q ss_pred ---------EEEEccccc----cCCCcHHHHhccCCCCCH-------HHHHHHHHHc-cchHHHhhccCCCCccccCCCC
Q 004004 661 ---------KAYVPQSSW----IQTGTIRENILFGKDMRQ-------SFYEEVLEGC-ALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 661 ---------iayV~Q~pw----I~ngTIreNIlfG~~~d~-------~~y~~vl~ac-~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
+||||.|.. +..-|+.||+.++.-.++ -++.++-+.+ .+-+..+.-+.|-.+. -.
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~----a~ 402 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP----AR 402 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc----hh
Confidence 689998874 789999999998754321 1112222221 2333333334555544 46
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
+||||+.||+=+||-+-++|+++|...||-+||.-..+.|.+..+
T Consensus 403 ~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~ 447 (501)
T COG3845 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLL 447 (501)
T ss_pred hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999988766
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.43 E-value=1.3e-13 Score=149.87 Aligned_cols=135 Identities=27% Similarity=0.379 Sum_probs=105.1
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE------------------------------EEcCeEEEEccccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI------------------------------KVHGKKAYVPQSSW 669 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I------------------------------~i~g~iayV~Q~pw 669 (779)
.++|+.++|+|++|-||||-++.|.||+.|.=| .- ++--++-||.--|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG-~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLG-RYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCC-CCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 458999999999999999999999999998777 32 11113567777888
Q ss_pred cCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 670 I~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
.+.||++|=+.--.+ .-+++++++.-+|++-++. +-..||||+-||+|||-|+.+|||+|++|||+|
T Consensus 176 ~~KG~v~elLk~~de--~g~~devve~l~L~nvl~r-----------~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 176 VVKGKVGELLKKVDE--RGKFDEVVERLGLENVLDR-----------DVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred HhcchHHHHHHhhhh--cCcHHHHHHHhcchhhhhh-----------hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 999999997753222 2478889999888765542 235799999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhHHHH
Q 004004 750 AVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 750 ALDa~t~~~If~~~i~g~L~ 769 (779)
-||....-+. .+.|+++.+
T Consensus 243 yLDi~qRl~~-ar~Irel~~ 261 (591)
T COG1245 243 YLDIRQRLNA-ARVIRELAE 261 (591)
T ss_pred cccHHHHHHH-HHHHHHHhc
Confidence 9998644332 234555554
No 400
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.42 E-value=9.1e-14 Score=133.79 Aligned_cols=134 Identities=25% Similarity=0.411 Sum_probs=104.0
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEccc-cccCCCcHHH
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQS-SWIQTGTIRE 677 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~-pwI~ngTIre 677 (779)
|- ..+.++..||..=+|||+||||||||..+.|..+ -+| +|.+.|. -||.+|+ .-.|...+-.
T Consensus 15 L~-plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sG-si~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LG-PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSG-SIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cc-ccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCc-eEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 55 6788999999999999999999999999999665 699 9999984 3787764 4467777888
Q ss_pred HhccCCCCCHH---HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCC
Q 004004 678 NILFGKDMRQS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDP 747 (779)
Q Consensus 678 NIlfG~~~d~~---~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~-------~adI~LLDDp 747 (779)
-+....|. ++ .++++.+.-+|++. .|..-..||||+.||+-||-.+++ ++.++|+|||
T Consensus 92 YL~L~qP~-~~~a~~i~~i~~~L~l~DK-----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 92 YLTLHQPD-KTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhhhcCch-HHHHHHHHHHHhhhcccch-----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 88777774 33 33344444444333 344457899999999999998887 4679999999
Q ss_pred CCCcCHHHHHHHH
Q 004004 748 FSAVDAHTGTHLF 760 (779)
Q Consensus 748 ~SALDa~t~~~If 760 (779)
-+.||...+..+.
T Consensus 160 ~~~LDvAQ~~aLd 172 (248)
T COG4138 160 MNSLDVAQQSALD 172 (248)
T ss_pred CcchhHHHHHHHH
Confidence 9999998776553
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.42 E-value=2e-13 Score=134.52 Aligned_cols=116 Identities=25% Similarity=0.310 Sum_probs=76.1
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--EE-EEccccccCCCcHHHHhccCCCCCHHHHHHH
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KA-YVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--ia-yV~Q~pwI~ngTIreNIlfG~~~d~~~y~~v 693 (779)
++.+.+|..+.|+||+||||||+++++..-.-..+| .+..... .+ ++++..--+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~---------------------- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQS-ATRRRSGVKAGCIVAAVSAEL---------------------- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcch-hhhccCcccCCCcceeeEEEE----------------------
Confidence 344556679999999999999999997655444444 2222110 11 011111000
Q ss_pred HHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~----~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
..+. ..||||||||++|||++.. +|+++|+|||++++|++....+.+. +...++
T Consensus 72 ----------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~-l~~~~~ 129 (162)
T cd03227 72 ----------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA-ILEHLV 129 (162)
T ss_pred ----------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh
Confidence 0010 1199999999999999986 7899999999999999999887663 445444
Q ss_pred H--HHhHhcc
Q 004004 770 Q--LLFSINH 777 (779)
Q Consensus 770 ~--~~~~~~~ 777 (779)
+ .++.++|
T Consensus 130 ~~~~vii~TH 139 (162)
T cd03227 130 KGAQVIVITH 139 (162)
T ss_pred cCCEEEEEcC
Confidence 3 3344444
No 402
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=1.3e-12 Score=139.57 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=49.6
Q ss_pred ccCCCCccccCCCCC----CChHHHHHHHHHHHH---------ccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 706 WADGDLSVVGERGIN----LSGGQKQRIQLARAV---------YSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 706 Lp~Gd~T~IGE~G~n----LSGGQKQRIaLARAl---------y~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
-|+.|+..+.-++.+ +|+|||||++|||++ +++|+++|||||+++||++..+.+++.
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~ 234 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDA 234 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHH
Confidence 478888877666665 899999999999997 489999999999999999999887664
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.38 E-value=8.2e-13 Score=141.93 Aligned_cols=142 Identities=27% Similarity=0.357 Sum_probs=106.7
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc--------cCCCCCeEEEcCe--EEEEcc--ccccCCCcHH
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--------PRISGAAIKVHGK--KAYVPQ--SSWIQTGTIR 676 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--------~~~~G~~I~i~g~--iayV~Q--~pwI~ngTIr 676 (779)
..+++ |+||+|++|+.++|+|+|||||||++..|+|++ .|++| .|.+.-. -|.+|- +|-+-.-||.
T Consensus 396 ryvlr-~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg-~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLR-NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG-KVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeee-ceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCC-ceeccccchhhccCcccccccCchhHH
Confidence 46899 999999999999999999999999999999874 58888 8877432 233433 3444444555
Q ss_pred HHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 004004 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 677 eNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~ 756 (779)
|-+- ..+=|-.--.+++..++|.+-.- --.+=..||-|||-|..||+++-.+|.+++.||--|-||..|+
T Consensus 474 ehl~-s~tGD~~~AveILnraGlsDAvl---------yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA 543 (593)
T COG2401 474 EHLR-SKTGDLNAAVEILNRAGLSDAVL---------YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543 (593)
T ss_pred HHHh-hccCchhHHHHHHHhhccchhhh---------hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHH
Confidence 5542 12223334456777777755321 1123356999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004004 757 THLFKA 762 (779)
Q Consensus 757 ~~If~~ 762 (779)
..+-++
T Consensus 544 ~rVArk 549 (593)
T COG2401 544 VRVARK 549 (593)
T ss_pred HHHHHH
Confidence 987655
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.36 E-value=3.7e-13 Score=141.22 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=99.0
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHh---ccCCCCC---HHHHH
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI---LFGKDMR---QSFYE 691 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNI---lfG~~~d---~~~y~ 691 (779)
+.+.+||+++|+|++|+|||||++.+.+.++...+ .+. .+.++.+++-.--..+.+.| .+..++| ..+++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f-dv~---~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP-EVY---LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccC-CeE---EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 57889999999999999999999999999887654 332 24565676543333344444 1112222 22222
Q ss_pred ---HHHHHc------c-----chHHHhhccCCCCccccCCCCCCChHH--------HHHHHHHHHHccCCCEEEEeCCCC
Q 004004 692 ---EVLEGC------A-----LNQDIEMWADGDLSVVGERGINLSGGQ--------KQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 692 ---~vl~ac------~-----L~~di~~Lp~Gd~T~IGE~G~nLSGGQ--------KQRIaLARAly~~adI~LLDDp~S 749 (779)
.+.+.+ + +-|++..++.++++.+|+.|.++|||| |||+++||++.++++|.+| ||+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~ 164 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATA 164 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeh
Confidence 111111 1 236789999999999999999999999 9999999999999999999 999
Q ss_pred CcCHHHHHH
Q 004004 750 AVDAHTGTH 758 (779)
Q Consensus 750 ALDa~t~~~ 758 (779)
+||+.++..
T Consensus 165 ~~d~~~~~~ 173 (249)
T cd01128 165 LVDTGSRMD 173 (249)
T ss_pred eecCCCccc
Confidence 999766654
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1e-12 Score=158.82 Aligned_cols=144 Identities=23% Similarity=0.345 Sum_probs=117.3
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC---CCCCeEEEcC----------eEEEEccccc-cCCCc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG----------KKAYVPQSSW-IQTGT 674 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~---~~G~~I~i~g----------~iayV~Q~pw-I~ngT 674 (779)
-.+++ |++.-++||+.+.+.||.||||||||+++.|..+. ..| +|..+| .++|++|+-+ +-.-|
T Consensus 128 ~~il~-~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~-~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 128 IQILK-DISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSG-EITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ceeec-CcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCC-ceeECCCcccccccCceEEeccccccccceeE
Confidence 35788 99999999999999999999999999999999874 356 688777 4899998665 67799
Q ss_pred HHHHhccCC-------CCC---HHHHHH-----HHHHccchHHHhhccCCCCccccCCCC-CCChHHHHHHHHHHHHccC
Q 004004 675 IRENILFGK-------DMR---QSFYEE-----VLEGCALNQDIEMWADGDLSVVGERGI-NLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 675 IreNIlfG~-------~~d---~~~y~~-----vl~ac~L~~di~~Lp~Gd~T~IGE~G~-nLSGGQKQRIaLARAly~~ 738 (779)
+||-+-|.. .+| +.+|.+ +++. -.|.+..||.+|.+.. ..|||||.|+++|-++..+
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lki-------lGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~ 278 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKI-------LGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGP 278 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHH-------hCchhhccceecccccccccCcccceeeeeeeeecC
Confidence 999998842 233 223322 2222 2356778999999765 6999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHH
Q 004004 739 SDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 739 adI~LLDDp~SALDa~t~~~If~ 761 (779)
+.++..||+|-+||+-|+=++.+
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik 301 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIK 301 (1391)
T ss_pred cceeeeecccccccHHHHHHHHH
Confidence 99999999999999999977653
No 406
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.36 E-value=8.8e-13 Score=119.73 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=56.0
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEccccccCCCcHH
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIR 676 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI~ngTIr 676 (779)
++|+ +++|++++|+.++|+||||||||||++++. +| ++.++| ..+|++|+ +|.+|||
T Consensus 3 ~aL~-~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G-~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~ 72 (107)
T cd00820 3 TSLH-GVLVDVYGKVGVLITGDSGIGKTELALELI------KR-KHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLR 72 (107)
T ss_pred eEEE-eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CC-eEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHH
Confidence 5688 999999999999999999999999999986 78 788776 26788888 9999999
Q ss_pred HHhcc
Q 004004 677 ENILF 681 (779)
Q Consensus 677 eNIlf 681 (779)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99998
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.1e-12 Score=138.26 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~----~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||||||++|||+++. +|++++||||+++||+++..++.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~ 215 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGK 215 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHH
Confidence 499999999999997543 999999999999999999988765
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.32 E-value=1.9e-12 Score=131.98 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=78.9
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEEcCeEEEEccccc-cCCCcHHHHhccCCCCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVPQSSW-IQTGTIRENILFGKDMR 686 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i~g~iayV~Q~pw-I~ngTIreNIlfG~~~d 686 (779)
+++++ | +++.+|+.++|+||+|||||||+++|.|.... ..| . .+.+. .++.|..- +.+-|++||+.+|....
T Consensus 14 ~~v~n-~--i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G-~-~v~a~-~~~~q~~~l~~~~~~~d~l~~~~s~~ 87 (199)
T cd03283 14 KRVAN-D--IDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAG-A-PVCAS-SFELPPVKIFTSIRVSDDLRDGISYF 87 (199)
T ss_pred Ceecc-e--EEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcC-C-EEecC-ccCcccceEEEeccchhccccccChH
Confidence 45666 4 55566899999999999999999999886642 345 2 22222 35556333 45678999999886432
Q ss_pred HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 687 ~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
.++.+++ .+-++.+. ..+|+++|+|||++++|+.....+....+..
T Consensus 88 ~~e~~~~------~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~ 133 (199)
T cd03283 88 YAELRRL------KEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKF 133 (199)
T ss_pred HHHHHHH------HHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHH
Confidence 2222221 11122211 0799999999999999999998776655544
Q ss_pred H
Q 004004 767 L 767 (779)
Q Consensus 767 ~ 767 (779)
+
T Consensus 134 l 134 (199)
T cd03283 134 L 134 (199)
T ss_pred H
Confidence 3
No 409
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=2e-11 Score=155.92 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=80.3
Q ss_pred cccc--cCCCcHHHHhccCCCC-CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHH------HHHHHHHHc
Q 004004 666 QSSW--IQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ------RIQLARAVY 736 (779)
Q Consensus 666 Q~pw--I~ngTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQ------RIaLARAly 736 (779)
.+-| .|+||++|||.+ +|- +++ ..+.+..+....+..+|.| +|+++.+| +||||||| |++||||+.
T Consensus 1147 ~~~w~~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1147 RDLWRSTYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred HHHHHHHcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHh
Confidence 4556 689999999999 553 444 6777778888999999999 89999987 99999999 999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.+|++++|||||++||+.+...+.+
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~ 1246 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAH 1246 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHH
Confidence 9999999999999999999987654
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=2e-11 Score=126.57 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=76.8
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEE-EEccccccCCCcHHHHhccCCCCCH
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-YVPQSSWIQTGTIRENILFGKDMRQ 687 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~ia-yV~Q~pwI~ngTIreNIlfG~~~d~ 687 (779)
+++.+ |+++++++|+.++|+||+||||||+++.+.-. .+-.+++ |||.+.-... +
T Consensus 17 ~~v~~-~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------~~la~~g~~vpa~~~~~~--~------------ 72 (222)
T cd03285 17 AFIPN-DVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------VLMAQIGCFVPCDSADIP--I------------ 72 (222)
T ss_pred CeEEe-eEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------HHHHHhCCCcCcccEEEe--c------------
Confidence 46777 99999999999999999999999999987621 0001111 4444431100 1
Q ss_pred HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCcCHHHHHHH
Q 004004 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVYIFDDP---FSAVDAHTGTHL 759 (779)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl--y~~adI~LLDDp---~SALDa~t~~~I 759 (779)
.+++++..++.+++ ..++|+|++||.++|+++ ..+|+++||||| |+++|.......
T Consensus 73 --~~~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~ 133 (222)
T cd03285 73 --VDCILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA 133 (222)
T ss_pred --cceeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH
Confidence 11122222322221 357999999999999999 899999999999 888998776543
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.18 E-value=4.1e-11 Score=122.39 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=72.3
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHHh-ccccCCCCCeEEE--cCeEEEEccccccCCCcHHHHhccCCCCCHHHHHH
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKV--HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEE 692 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~iL-Ge~~~~~G~~I~i--~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~ 692 (779)
.++++.+|++++|+||+|||||||+++|. +.+....| .... ...++|+.|.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g-~~~~~~~~~i~~~dqi------------------------- 75 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIG-CFVPAESASIPLVDRI------------------------- 75 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcC-CCccccccccCCcCEE-------------------------
Confidence 36777899999999999999999999999 44433444 2110 0112222211
Q ss_pred HHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHh
Q 004004 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765 (779)
Q Consensus 693 vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~ 765 (779)
+..++..+ .+-++-..+|+++|| ++.+-+...+|+++|+|||++++|+.....+....+.
T Consensus 76 ----------~~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~ 135 (202)
T cd03243 76 ----------FTRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLE 135 (202)
T ss_pred ----------EEEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 11111111 122333456666665 7777788899999999999999999988877655443
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.14 E-value=2e-10 Score=145.84 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=46.3
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHH
Q 004004 709 GDLSVVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 709 Gd~T~IGE~G~nLSGGQKQRIaLARAly~~---adI~LLDDp~SALDa~t~~~If~ 761 (779)
||.+ +|..-.+|||||.|||-||.-|.++ +.+|+|||||.+|+.+.-+++.+
T Consensus 1689 gYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635 1689 GYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred Ceee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 5554 6899999999999999999999976 78999999999999999887654
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=2.8e-10 Score=116.35 Aligned_cols=121 Identities=15% Similarity=0.061 Sum_probs=84.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEEcCeEEEEc-cccccCCCcHHHHhccCCCCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVP-QSSWIQTGTIRENILFGKDMR 686 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i~g~iayV~-Q~pwI~ngTIreNIlfG~~~d 686 (779)
+++.+ |+++++++|+.++|+||+||||||+++.+.+..-. .-| . ||| +.+ +-++.|||..
T Consensus 16 ~~v~~-~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G-------~--~vpa~~~---~l~~~d~I~~----- 77 (204)
T cd03282 16 NFIPN-DIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG-------C--FVPAEYA---TLPIFNRLLS----- 77 (204)
T ss_pred cEEEe-eeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC-------C--Ccchhhc---CccChhheeE-----
Confidence 56778 99999999999999999999999999998764311 012 0 111 122 1255555532
Q ss_pred HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 687 ~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
.+..+| .+.++-.++|+|+||+ +.+-+...+++++|||||++++|+..+..+..+.+..
T Consensus 78 ------------------~~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~ 136 (204)
T cd03282 78 ------------------RLSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILEC 136 (204)
T ss_pred ------------------ecCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 222222 2335557899999975 5555577899999999999999999988887766655
Q ss_pred HH
Q 004004 767 LF 768 (779)
Q Consensus 767 ~L 768 (779)
+.
T Consensus 137 l~ 138 (204)
T cd03282 137 LI 138 (204)
T ss_pred HH
Confidence 44
No 414
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.07 E-value=1.2e-10 Score=119.88 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----CCcCHHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPF-----SAVDAHTGTHLFKA 762 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~-----SALDa~t~~~If~~ 762 (779)
|++++.|||+++.+|+++++|||| ++||+.+.+++.+.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~ 199 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKE 199 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHH
Confidence 999999999999999999999999 99999999887663
No 415
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.4e-09 Score=126.19 Aligned_cols=49 Identities=31% Similarity=0.588 Sum_probs=44.8
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~a---dI~LLDDp~SALDa~t~~~If~ 761 (779)
.+|..-.+||||+.|||=||.-|.+++ -+|||||||.+|-.|--+++.+
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~ 866 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE 866 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 468889999999999999999999988 8999999999999988888654
No 416
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.04 E-value=4.6e-10 Score=115.97 Aligned_cols=127 Identities=28% Similarity=0.414 Sum_probs=72.6
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHH---hccccC--CCCC----eEEE--------cCeEEEEccccc----cCCC--
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSI---LGEIPR--ISGA----AIKV--------HGKKAYVPQSSW----IQTG-- 673 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~i---LGe~~~--~~G~----~I~i--------~g~iayV~Q~pw----I~ng-- 673 (779)
.+.+.+ .+++|+||+||||||++.|| +|+-+. ..+. -|.- ...+....+++- +...
T Consensus 19 ~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~~~~ 97 (220)
T PF02463_consen 19 ELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDKKEI 97 (220)
T ss_dssp EEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSSSEE
T ss_pred EEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344443 49999999999999999999 454221 0110 1111 011222222111 1111
Q ss_pred cHHHHh---------ccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHH----HHHccCCC
Q 004004 674 TIRENI---------LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA----RAVYSNSD 740 (779)
Q Consensus 674 TIreNI---------lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLA----RAly~~ad 740 (779)
.|+..+ +-+.+...+.|.+.++...+..+ .||||||-+++|| .+-+.+++
T Consensus 98 ~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~~~~p 160 (220)
T PF02463_consen 98 EISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRYKPSP 160 (220)
T ss_dssp EEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTCS--S
T ss_pred cccccccccccccccccccccccccccccccccccccc-----------------ccccccccccccccccccccccccc
Confidence 111111 11233455666666666655443 9999999999997 44578999
Q ss_pred EEEEeCCCCCcCHHHHHHHHH
Q 004004 741 VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 741 I~LLDDp~SALDa~t~~~If~ 761 (779)
+|+||||.++||....+++.+
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~ 181 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLAD 181 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHH
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999988664
No 417
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.01 E-value=1.2e-09 Score=112.51 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=82.7
Q ss_pred cEEeeCC--cEEEEEcCCCCChhHHHHHHh--ccccCCCCCeEEE--cCeEEEEccccccCC--CcHHHHhccCCCCCHH
Q 004004 617 KMKIMKG--SKVAVCGSVGSGKSSLLSSIL--GEIPRISGAAIKV--HGKKAYVPQSSWIQT--GTIRENILFGKDMRQS 688 (779)
Q Consensus 617 nl~I~~G--~~vaIvG~sGSGKSTLL~~iL--Ge~~~~~G~~I~i--~g~iayV~Q~pwI~n--gTIreNIlfG~~~d~~ 688 (779)
++.+.++ .+++|+||+|+||||||+.+. +.+ ...| .... ..+++|..|.-.-++ .|+.++.
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G-~~v~a~~~~~~~~d~i~~~l~~~~si~~~~--------- 89 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIG-SFVPADSATIGLVDKIFTRMSSRESVSSGQ--------- 89 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCC-CeeEcCCcEEeeeeeeeeeeCCccChhhcc---------
Confidence 3444454 789999999999999999998 444 4566 4433 246778777532111 1111111
Q ss_pred HHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
-| =--+-||+++|++...+++++|||||++++|+..+..++...+..+.
T Consensus 90 ----------------------S~---------f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~ 138 (213)
T cd03281 90 ----------------------SA---------FMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLL 138 (213)
T ss_pred ----------------------ch---------HHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 00 03456999999999999999999999999999998888887777765
Q ss_pred HH-----HHhHhcc
Q 004004 769 HQ-----LLFSINH 777 (779)
Q Consensus 769 ~~-----~~~~~~~ 777 (779)
++ .++.++|
T Consensus 139 ~~~~~~~~vli~TH 152 (213)
T cd03281 139 KRGPECPRVIVSTH 152 (213)
T ss_pred hcCCCCcEEEEEcC
Confidence 53 2455566
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.98 E-value=1.4e-09 Score=117.86 Aligned_cols=143 Identities=26% Similarity=0.443 Sum_probs=104.5
Q ss_pred eEEEeccccccCCCcccccCCcEEeeCCc-----EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccc-
Q 004004 596 GEYAWDAREENFKKPTIKLTDKMKIMKGS-----KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW- 669 (779)
Q Consensus 596 ~sFsw~~~~~~~~~~~L~~~inl~I~~G~-----~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pw- 669 (779)
+.++|+. .+.+.. +-.|.|+.|+ .+.-.|+.|-||||+++.++|..+|.+|+++-. =.++|=||.--
T Consensus 341 ~~y~Yp~-----m~k~~g-~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-lnVSykpqkisp 413 (592)
T KOG0063|consen 341 GRYSYPK-----MKKTVG-DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-LNVSYKPQKISP 413 (592)
T ss_pred heeccCc-----ceeeee-eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-cceeccccccCc
Confidence 3455654 234556 7778888885 677899999999999999999999998844322 26899999643
Q ss_pred cCCCcHHHHhcc---CCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 670 IQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 670 I~ngTIreNIlf---G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
=+.||+|+=.-= ..-++..-..+|.+--..+ ..++..-.+||||+.||+|||=++=+.||+|+.||
T Consensus 414 K~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie-----------~i~dqevq~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 414 KREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE-----------NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred cccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH-----------HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 578898875420 1112334444444443333 33445568999999999999999999999999999
Q ss_pred CCCCcCHHHH
Q 004004 747 PFSAVDAHTG 756 (779)
Q Consensus 747 p~SALDa~t~ 756 (779)
|..-||++..
T Consensus 483 psAylDSeQR 492 (592)
T KOG0063|consen 483 PSAYLDSEQR 492 (592)
T ss_pred chhhcChHHH
Confidence 9999999753
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.93 E-value=2.8e-09 Score=128.42 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=81.4
Q ss_pred CcEEeeCC-cEEEEEcCCCCChhHHHHHHhcc-ccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHH
Q 004004 616 DKMKIMKG-SKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (779)
Q Consensus 616 inl~I~~G-~~vaIvG~sGSGKSTLL~~iLGe-~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~v 693 (779)
+++++.+| +.++|+||+|+||||||+.+.|. +.+..| . |||..+... -.+-++|.. .+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-~--------~Vpa~~~~~-~~~~d~i~~--~i-------- 373 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-I--------PIPANEHSE-IPYFEEIFA--DI-------- 373 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-C--------CccCCcccc-ccchhheee--ec--------
Confidence 57888877 89999999999999999999998 455666 1 333332100 011222210 00
Q ss_pred HHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|++-.+.++-.++|+|++|+..+++++ .+++++|||||++++|+..+..+....+..+
T Consensus 374 ---------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l 431 (771)
T TIGR01069 374 ---------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYL 431 (771)
T ss_pred ---------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 011112344567999999999999987 7899999999999999999998876555443
No 420
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.90 E-value=3.9e-09 Score=104.75 Aligned_cols=139 Identities=20% Similarity=0.256 Sum_probs=100.5
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-----E-----------------cCeEEEEccc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----V-----------------HGKKAYVPQS 667 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-----i-----------------~g~iayV~Q~ 667 (779)
.+.. ++|++...||.-++||+||||||-..++|-|-..- += .|. . ...|+.+.|+
T Consensus 21 K~VD-~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW-~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 21 KAVD-RVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NW-RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred Eeee-eeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ce-EEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 3566 89999999999999999999999999999996542 11 121 1 1248999999
Q ss_pred cccCC---Cc----HHHHhccC---CC------CCHHHHHHHHHHccch--HHHhhccCCCCccccCCCCCCChHHHHHH
Q 004004 668 SWIQT---GT----IRENILFG---KD------MRQSFYEEVLEGCALN--QDIEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 668 pwI~n---gT----IreNIlfG---~~------~d~~~y~~vl~ac~L~--~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
|--.- .+ +-+||-+- .. ..+.+--+.++..++. +||.. .|-. .|--|+-|++
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~-------ElTeGE~QKV 167 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPY-------ELTEGECQKV 167 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcc-------hhccCcceee
Confidence 97322 22 34566431 11 2344455677778874 46542 2222 3445777889
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 730 aLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-||-|+...|.++|-||||.++|+.|..+||.
T Consensus 168 MIA~A~AnqPrLLIADEPTN~~e~~Tq~QifR 199 (330)
T COG4170 168 MIAIALANQPRLLIADEPTNSMEPTTQAQIFR 199 (330)
T ss_pred eeehhhccCCceEeccCCCcccCccHHHHHHH
Confidence 99999999999999999999999999999997
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.89 E-value=1.5e-09 Score=109.38 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=67.6
Q ss_pred EEEEcCCCCChhHHHHHHh-ccccCCCCCeEEEc--CeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHH
Q 004004 626 VAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKVH--GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (779)
Q Consensus 626 vaIvG~sGSGKSTLL~~iL-Ge~~~~~G~~I~i~--g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~d 702 (779)
++|+||+||||||+++.+. ..+....| ..... .+++|+.|-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G-~~v~a~~~~~~~~d~i----------------------------------- 45 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIG-SFVPAESAELPVFDRI----------------------------------- 45 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhC-CCeeehheEecccceE-----------------------------------
Confidence 6799999999999999998 55555566 22111 122222211
Q ss_pred HhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 703 i~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~--~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
+..++. +-.+.++-.++|+|++| +++++-. +|+++|+|||++++|+..+..++...+..+.+
T Consensus 46 l~~~~~--~d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~ 109 (185)
T smart00534 46 FTRIGA--SDSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE 109 (185)
T ss_pred EEEeCC--CCchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 111111 11123445678888887 4555555 99999999999999999999988776665543
No 422
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=4.4e-09 Score=113.79 Aligned_cols=169 Identities=20% Similarity=0.265 Sum_probs=110.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pw 669 (779)
.|.++|.+.+-.. +..+- |.||.|-.|...++|||+|-||||||+-|..---...- +=.+-||-|+..
T Consensus 264 DIKiEnF~ISA~G------k~LFv-nA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-----nIDvLlCEQEvv 331 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFV-NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-----NIDVLLCEQEVV 331 (807)
T ss_pred cceeeeeeeeccc------ceeee-ccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-----CCceEeeeeeee
Confidence 3677776665432 33444 88999999999999999999999999988742111111 113667888776
Q ss_pred cCCCcHHHHhcc---------------------CCCCCHHHHHHHHH---Hccc---hHHHh-hc-cCCCCccccCCCC-
Q 004004 670 IQTGTIRENILF---------------------GKDMRQSFYEEVLE---GCAL---NQDIE-MW-ADGDLSVVGERGI- 719 (779)
Q Consensus 670 I~ngTIreNIlf---------------------G~~~d~~~y~~vl~---ac~L---~~di~-~L-p~Gd~T~IGE~G~- 719 (779)
--+.|--+-|+= |..-..+++++|.+ +.+. +.--. .| --|..-++-+|..
T Consensus 332 ad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 332 ADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTT 411 (807)
T ss_pred ecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcc
Confidence 655554444432 11112334444332 2111 11111 11 2367777778775
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQL 771 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~ 771 (779)
..|||=|-||+||||||-.|-++.|||||..||-+.--. .++++.|.-+.+
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIW-LdNYLQgWkKTL 462 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIW-LDNYLQGWKKTL 462 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeee-hhhHHhhhhhee
Confidence 599999999999999999999999999999999865433 355666654443
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.87 E-value=4e-09 Score=108.95 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=64.5
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc-cCCCCCeEE-EcCeEEEEccccccCCCcHHHHhccCCCCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAIK-VHGKKAYVPQSSWIQTGTIRENILFGKDMR 686 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~-~~~~G~~I~-i~g~iayV~Q~pwI~ngTIreNIlfG~~~d 686 (779)
+.+.+ ++++++++ ++++|+||+||||||+++.+.+.. ....|..+- -..+++|+.|-. ..-+++|
T Consensus 18 ~~v~n-~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~--~~~~~~~--------- 84 (216)
T cd03284 18 PFVPN-DTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF--TRIGASD--------- 84 (216)
T ss_pred ceEee-eEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe--ccCCchh---------
Confidence 34667 88888877 999999999999999999996532 122341111 123566665421 1222333
Q ss_pred HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH----HHHHHHHc--cCCCEEEEeCC---CCCcCHHH
Q 004004 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR----IQLARAVY--SNSDVYIFDDP---FSAVDAHT 755 (779)
Q Consensus 687 ~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR----IaLARAly--~~adI~LLDDp---~SALDa~t 755 (779)
|+|+||.++ ..+++++- .+|+++||||| |+++|...
T Consensus 85 ---------------------------------~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~ 129 (216)
T cd03284 85 ---------------------------------DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS 129 (216)
T ss_pred ---------------------------------hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Confidence 344444443 34666654 59999999999 88888744
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=1.4e-08 Score=105.16 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=76.8
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc-cccCCCCCeEEEcC--eEEEEccccccCCCcHHHHhccCCCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG--KKAYVPQSSWIQTGTIRENILFGKDM 685 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG-e~~~~~G~~I~i~g--~iayV~Q~pwI~ngTIreNIlfG~~~ 685 (779)
+++.+ |+++.+++|++++|+||+|+||||+++.+.+ ++.+..| ...... +++|.+|--. .-.-+|++.-|...
T Consensus 18 ~~v~n-~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G-~~v~a~~~~~~~~~~i~~--~~~~~d~~~~~~St 93 (222)
T cd03287 18 SFVPN-DIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIG-SFVPASSATLSIFDSVLT--RMGASDSIQHGMST 93 (222)
T ss_pred CEEEE-eEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCC-CEEEcCceEEeccceEEE--EecCccccccccch
Confidence 46777 9999999999999999999999999999999 8888888 543321 3444433211 11112222211110
Q ss_pred CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHh
Q 004004 686 RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765 (779)
Q Consensus 686 d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~ 765 (779)
=..+=+|++-.=.-..+++++|||||.++.|+..+..+....+.
T Consensus 94 ------------------------------------F~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~ 137 (222)
T cd03287 94 ------------------------------------FMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLH 137 (222)
T ss_pred ------------------------------------HHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHH
Confidence 01111121111111257899999999999988888777766665
Q ss_pred HHHHH
Q 004004 766 SLFHQ 770 (779)
Q Consensus 766 g~L~~ 770 (779)
.+++.
T Consensus 138 ~l~~~ 142 (222)
T cd03287 138 YLLEE 142 (222)
T ss_pred HHHhc
Confidence 55543
No 425
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.69 E-value=1.1e-07 Score=115.16 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=77.5
Q ss_pred cEEeeC-CcEEEEEcCCCCChhHHHHHHhcc-ccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHH
Q 004004 617 KMKIMK-GSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL 694 (779)
Q Consensus 617 nl~I~~-G~~vaIvG~sGSGKSTLL~~iLGe-~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl 694 (779)
++.+.. +..++|+||+++||||+|+.+... +-...| . |||-+.- ..-++-|+|..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G-~--------~vpa~~~-~~i~~~~~i~~------------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSG-L--------PIPANEP-SEIPVFKEIFA------------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhC-C--------CcccCCC-ccccccceEEE-------------
Confidence 445543 567899999999999999988533 122333 1 2222210 01122233321
Q ss_pred HHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
.-||.--+..+-.++|+|++|+..++|++ .+++++|||||++++|+..+..+....+..+
T Consensus 377 ------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 377 ------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL 436 (782)
T ss_pred ------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 12344444456678999999999999999 8999999999999999999998877655443
No 426
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.66 E-value=1.1e-08 Score=104.22 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=80.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcH--HHHhc----cCCCCCHHHHHHHHHHcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI--RENIL----FGKDMRQSFYEEVLEGCA 698 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTI--reNIl----fG~~~d~~~y~~vl~ac~ 698 (779)
+++|+|+.|||||||++.+++++++..| ...+...+++..|.+|+.+.++ +||+. -|.+....|++.+...|+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 6899999999999999999999887656 5555666777777888776652 45553 246677778888899999
Q ss_pred chHHHhhccCCCCccccCCCCCCChHH
Q 004004 699 LNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 699 L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
|.++++.+|++|.+.|+..|.++|.--
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCCccccc
Confidence 999888889999999999998887665
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=4.3e-08 Score=119.72 Aligned_cols=48 Identities=29% Similarity=0.485 Sum_probs=43.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~a--dI~LLDDp~SALDa~t~~~If~ 761 (779)
.+....+|||||+|||+||||+.+++ ++|||||||++||++..+++.+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~ 530 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN 530 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH
Confidence 45667899999999999999999986 8999999999999999988765
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.61 E-value=1.4e-08 Score=110.10 Aligned_cols=123 Identities=29% Similarity=0.390 Sum_probs=93.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE-----------cC-------------------eEEEEcccccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-----------HG-------------------KKAYVPQSSWI 670 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i-----------~g-------------------~iayV~Q~pwI 670 (779)
++|+..++||..|-||||=++.++|.++|.-| .-.- .| +.-||.|-|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg-~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG-RYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCC-CCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 37999999999999999999999999999877 3211 11 23577777777
Q ss_pred CCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 004004 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (779)
Q Consensus 671 ~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SA 750 (779)
-.|++++++- +..+.+..+++++.-+|..-++. + -..||||+-||.++|-|..+++|+|++|||.|-
T Consensus 177 ~k~~v~~~l~--~~~~r~~~~~~~~~~~L~~~~~r-------e----~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 177 VKGTVGSLLD--RKDERDNKEEVCDQLDLNNLLDR-------E----VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHH--HHhhcccHHHHHHHHHHhhHHHh-------h----hhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 7788887764 22333455566665555443321 1 246999999999999999999999999999999
Q ss_pred cCHHHHH
Q 004004 751 VDAHTGT 757 (779)
Q Consensus 751 LDa~t~~ 757 (779)
||....-
T Consensus 244 LDVKQRL 250 (592)
T KOG0063|consen 244 LDVKQRL 250 (592)
T ss_pred chHHHhh
Confidence 9987643
No 429
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.59 E-value=4.7e-08 Score=119.58 Aligned_cols=48 Identities=29% Similarity=0.491 Sum_probs=43.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~a--dI~LLDDp~SALDa~t~~~If~ 761 (779)
.+..-.+|||||||||+||||+.++| ++|||||||++||++..+.+++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~ 532 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE 532 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH
Confidence 35667899999999999999999997 9999999999999999988775
No 430
>PRK12369 putative transporter; Reviewed
Probab=98.59 E-value=0.00073 Score=74.09 Aligned_cols=223 Identities=14% Similarity=0.041 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh--
Q 004004 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLG-- 414 (779)
Q Consensus 338 ~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg-- 414 (779)
..|..+++..+.|..|+..+.++=+..+..-.++. .+++.|++++.+... ....+...++.++.-..+||..-|
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~~~~~iDNPD---QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l 159 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRNKRDNIEGSS---QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGV 159 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34557789999999999999999987543211221 588899988877654 345566666666666677776322
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHhchHHHHHhchH-HHHHHHHH
Q 004004 415 ---------AAPAFAALFSTIFVMVSNTPLANRQERFHSM-IMEAKDARIKATS--ETLKSMRVLKLLSWE-QEFLKKLL 481 (779)
Q Consensus 415 ---------~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~-~~~~~d~R~~~~~--E~L~~ir~IK~~~wE-~~f~~~i~ 481 (779)
.....+.++..++...+...+++...+...+ ....-|=|-..+. |.-++ | -| +...++..
T Consensus 160 ~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~~f~ 232 (326)
T PRK12369 160 SLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIELFT 232 (326)
T ss_pred eeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHHHHH
Confidence 0222222322333333334444433222111 1122333433221 11111 1 12 33445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 482 RLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561 (779)
Q Consensus 482 ~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~v 561 (779)
+.++.-.+..+................+.+-.++ .+-.+..++++.|.+.-+...|+.++..+..+.+.+..+.+-..
T Consensus 233 ~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li--~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A 310 (326)
T PRK12369 233 GLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLI--MAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRS 310 (326)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444433333333322222222 22334578899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 004004 562 SLYRIQEFIKE 572 (779)
Q Consensus 562 S~~RI~~fL~~ 572 (779)
+.+|+.+|.+.
T Consensus 311 ~~~RL~~f~~~ 321 (326)
T PRK12369 311 IYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.58 E-value=2.5e-08 Score=117.44 Aligned_cols=71 Identities=30% Similarity=0.413 Sum_probs=57.4
Q ss_pred hccCCCCccccCCC------CCCChHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCcCHHHHHHHHHHHHhHH
Q 004004 705 MWADGDLSVVGERG------INLSGGQKQRIQLARAVY----------SNSDVYIFDDPF-SAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 705 ~Lp~Gd~T~IGE~G------~nLSGGQKQRIaLARAly----------~~adI~LLDDp~-SALDa~t~~~If~~~i~g~ 767 (779)
.+|+|.++.+++.| .+||||||||++||||+. .+|+++|||||| ++||+.....+.+ .+...
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~ 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC
Confidence 46889999999999 689999999999999987 599999999999 7899999888765 44433
Q ss_pred HHH-HHhHhcc
Q 004004 768 FHQ-LLFSINH 777 (779)
Q Consensus 768 L~~-~~~~~~~ 777 (779)
+. .++.|+|
T Consensus 526 -~~~~iiiish 535 (562)
T PHA02562 526 -KDTNVFVISH 535 (562)
T ss_pred -CCCeEEEEEC
Confidence 22 3444555
No 432
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.54 E-value=6.9e-08 Score=108.29 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=42.6
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~ 660 (779)
.+|+ ++|+++++||.++|||||||||||||+ .|...|.+|++|.++|+
T Consensus 20 ~vL~-~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 20 RILV-KFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHh-CCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 5788 999999999999999999999999999 67777777746999884
No 433
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.53 E-value=0.0015 Score=73.40 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh--
Q 004004 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGA-- 415 (779)
Q Consensus 339 ~~~~~r~~~~lR~~L~~~iy~K~L~ls~~~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~-- 415 (779)
.|..+++..+.|..|+....++=++++.-.. .=.|++.|++++.+... ....+...++.++.-+.+||..-|.
T Consensus 159 ~~~~~~l~irWR~wLT~~yl~~Wl~~r~ien----PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~ 234 (409)
T PRK11098 159 NFFVSHYVFRWRTAMNEYYMAHWQKLRHIEG----AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVP 234 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4456788899999999999988776642111 34578888888877553 3445555666666666667653331
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHhchHHHHHhchH-HHHHHHHH
Q 004004 416 ----------APAFAALFSTIFVMVSNTPLANRQERFHSMIM-EAKDARIKAT--SETLKSMRVLKLLSWE-QEFLKKLL 481 (779)
Q Consensus 416 ----------~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~-~~~d~R~~~~--~E~L~~ir~IK~~~wE-~~f~~~i~ 481 (779)
....++++-.++...+...++++..+..-+.+ ..-|=|-..+ .|.-+ .-| +...++..
T Consensus 235 ~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~ 306 (409)
T PRK11098 235 ELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFS 306 (409)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHH
Confidence 01112222222222233333333322221111 1123333221 11111 113 23455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 482 RLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561 (779)
Q Consensus 482 ~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~v 561 (779)
+.|+.-.+......+..............+-.++ .+-.+..|++|.|.+..+...|+.++..+..+.+....+.+-..
T Consensus 307 ~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv--~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A 384 (409)
T PRK11098 307 NVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFL--LFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLS 384 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555444444444433322222222122 22234578899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 004004 562 SLYRIQEFIKE 572 (779)
Q Consensus 562 S~~RI~~fL~~ 572 (779)
..+|+.+|.+.
T Consensus 385 ~~~RL~~F~~~ 395 (409)
T PRK11098 385 IYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 434
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.50 E-value=1e-06 Score=82.01 Aligned_cols=100 Identities=28% Similarity=0.370 Sum_probs=74.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCC-CCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccch
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~-G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~ 700 (779)
+|..+.|+||+||||||+++.+++.+.... + .+.++.... ........+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~---------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGG-VIYIDGEDI-------LEEVLDQLL---------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCC-EEEECCEEc-------cccCHHHHH----------------------
Confidence 467899999999999999999999988765 3 344433211 111111111
Q ss_pred HHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 701 ~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
....++......+++.++..+++|-+.+++++++||+....|.........
T Consensus 51 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 ----------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred ----------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHh
Confidence 344556677889999999999999999999999999999999988876654
No 435
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.48 E-value=1.4e-07 Score=100.32 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK 660 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~ 660 (779)
.-++|+||+|||||||+++|.|++++.+| ++.++|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G-~i~~~g~ 147 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGIS-QLGLRGK 147 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCc-eEEECCE
Confidence 67899999999999999999999999999 9999884
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.39 E-value=1.6e-06 Score=90.49 Aligned_cols=113 Identities=26% Similarity=0.278 Sum_probs=65.6
Q ss_pred EeeCCcEEEEEcCCCCChhHH-HHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHh-ccCCCCCHHHHHHHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSL-LSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTL-L~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNI-lfG~~~d~~~y~~vl~a 696 (779)
-+++|+.+.|.|++||||||| ++.+.+..++ | .++.|++.+-- ...+.++. .+|-+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g------~~~~yi~~e~~--~~~~~~~~~~~g~~------------ 77 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--G------YSVSYVSTQLT--TTEFIKQMMSLGYD------------ 77 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--C------CcEEEEeCCCC--HHHHHHHHHHhCCc------------
Confidence 478999999999999999999 5777776553 3 13456552211 11122222 12222
Q ss_pred ccchHHHhhcc-CCCCccccCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCc----CHHHHHHHH
Q 004004 697 CALNQDIEMWA-DGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAV----DAHTGTHLF 760 (779)
Q Consensus 697 c~L~~di~~Lp-~Gd~T~IGE~G~nLSGGQKQRIaLARAly~----~adI~LLDDp~SAL----Da~t~~~If 760 (779)
++.+- .|..-.+ +--..+|+++.++-.++|.+-. +|+++++|||++.+ |+...+.++
T Consensus 78 ------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~ 143 (230)
T PRK08533 78 ------INKKLISGKLLYI-PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM 143 (230)
T ss_pred ------hHHHhhcCcEEEE-EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH
Confidence 11110 0110000 0012467777777666665554 69999999999999 665455443
No 437
>PRK13695 putative NTPase; Provisional
Probab=98.38 E-value=3.9e-07 Score=90.75 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=66.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHh
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~ 704 (779)
+++|+|++|||||||++.+.+++.+ .| . .+ .+|+.|+..- ++ + ..|-... .. . -+-..-+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~-~~---~g~~~~~~~~-~~----~-~~~~~~~--~~----~-~~~~~~l~ 62 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-Y-KV---GGFYTEEVRE-GG----K-RIGFKII--DL----D-TGEEGILA 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-C-eE---EEEEcHHHHh-cC----C-ccceEEE--Ec----C-CCCeEEcc
Confidence 6899999999999999999998776 57 2 22 4566664211 00 0 1111100 00 0 00000011
Q ss_pred hccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC--CCCcCHH
Q 004004 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP--FSAVDAH 754 (779)
Q Consensus 705 ~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp--~SALDa~ 754 (779)
....-....++.....+||+++-++.+++...++|+++++||| +..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~ 114 (174)
T PRK13695 63 RVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK 114 (174)
T ss_pred ccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH
Confidence 1100012234455667999999999999999999999999995 4444433
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=1.1e-06 Score=97.37 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccc---c-------CCcEEeeCCcE
Q 004004 556 IAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIK---L-------TDKMKIMKGSK 625 (779)
Q Consensus 556 ~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~---~-------~inl~I~~G~~ 625 (779)
..++..+.+|+.+.+..+...... + ......++|+|++|.|++. +++|+ . |+++.|.+|+.
T Consensus 100 ~~R~~~~~ER~~~Ll~v~~vn~~~---~-e~~~~ri~Fe~LTf~YP~e-----r~~Le~~~~~~~~R~id~~~pig~Gq~ 170 (415)
T TIGR00767 100 QIRSPKEGERYFALLKVESVNGDD---P-EKAKNRVLFENLTPLYPNE-----RLRLETSTEDLSTRVLDLFAPIGKGQR 170 (415)
T ss_pred EEeccccHhHHHHHhCCCccCCCC---c-cccCCCeEEEEeeecCCCc-----cceeecCccccceeeeeeEEEeCCCCE
Confidence 345567889999999876543211 1 2234579999999999862 24442 1 68899999999
Q ss_pred EEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 626 vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
++|+||+|+|||||++.|.+.+....- .+.+ +.++.+++
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~nhf-dv~v---~VlLIgER 209 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRNHP-EVEL---IVLLIDER 209 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhcccCC-ceEE---EEEEcCCC
Confidence 999999999999999999998875422 2222 45555543
No 439
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.32 E-value=0.0021 Score=69.25 Aligned_cols=201 Identities=15% Similarity=0.064 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (779)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~i 357 (779)
+...++.++.+.++......-+.+.+.+.+.+.+.+.. . ++.+++..+..+.......|...++..+.|..|+..+
T Consensus 30 ~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~-~---l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~ 105 (281)
T PF06472_consen 30 LVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWR-L---LLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666777778888887655212211 1 1111222222233333445567889999999999999
Q ss_pred HHHHhcccCCCC------ChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004004 358 YKRSMAIKFAGP------SSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMV 430 (779)
Q Consensus 358 y~K~L~ls~~~~------~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ll~~~ 430 (779)
.++-++-....+ ...+.=.+++.|++++.+... ....+...++.++...+.|+...|+...++.++..++...
T Consensus 106 ~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~ 185 (281)
T PF06472_consen 106 HDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTL 185 (281)
T ss_pred HHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 999876543222 123444689999999888654 4566666777788888889988884444355555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH
Q 004004 431 SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (779)
Q Consensus 431 ~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~ 482 (779)
+...+++...+...+..+...+--.....+.++-+.|-+|+-|+.-.+++++
T Consensus 186 ~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~ 237 (281)
T PF06472_consen 186 ITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDR 237 (281)
T ss_pred HHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHH
Confidence 6677777776666655555555556677888999999999988766655544
No 440
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.31 E-value=4.9e-07 Score=91.91 Aligned_cols=108 Identities=15% Similarity=0.221 Sum_probs=69.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHh-----ccC--CCCCHHHHHHHHHHc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-----LFG--KDMRQSFYEEVLEGC 697 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNI-----lfG--~~~d~~~y~~vl~ac 697 (779)
+++|+|++|||||||.+.|.+.+ ..| .+.+++++.+...-+.+++- .++ .+++.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~-------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 66 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNP-------KVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLIS----- 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCC-------CeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHH-----
Confidence 47999999999999999999987 223 45566777665443333322 222 2344444433
Q ss_pred cchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 004004 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t 755 (779)
++..+-.|.. +--...+.|.|++++-.+ ...+++++|+|.|++..++..
T Consensus 67 ----~l~~l~~~~~--~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 67 ----HLQDLKNGKS--VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred ----HHHHHHCCCC--EeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 3333333322 223345778888776554 568899999999999988644
No 441
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.30 E-value=0.003 Score=65.06 Aligned_cols=178 Identities=17% Similarity=0.156 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (779)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (779)
++.++|.|++++..+..+-+...++..+.|++++.-||.+-+++ ......+++..++...+.+ ..+ ..-.|.
T Consensus 1 Lk~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~----~~~~~~~~~~~l~~~~iga-aRR---~~DTRv 72 (237)
T PF13748_consen 1 LKAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGD----VWQALMYAALVLLMWAIGA-ARR---IYDTRV 72 (237)
T ss_pred ChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHHhh-hhH---HHhhHH
Confidence 36789999999999999999999999999999999999887654 2223333333332222222 222 224567
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004004 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (779)
Q Consensus 346 ~~~lR~~L~~~iy~K~L~ls~~~~~sG~ivnlms~Dv~~i~~~~-~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~ 424 (779)
-.|++..+...++.+.-+ ...+++++..+++ =...+.||+ .+++.+.++.++++.++++|...-- +..++++++
T Consensus 73 f~rIy~~la~~vi~~qr~---~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~-~~g~~~l~~ 147 (237)
T PF13748_consen 73 FSRIYAELAVPVILSQRQ---QGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEF-WLGLACLLI 147 (237)
T ss_pred HHHHHHHHhHHHHHHHHH---hCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 788999998887766532 2336677777764 234455655 3577888889999888887764322 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKA 456 (779)
Q Consensus 425 ~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~ 456 (779)
.+++..+...++++..+...+.+...+++++.
T Consensus 148 l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~ 179 (237)
T PF13748_consen 148 LALFLLILPRFARRNYRLYRRLNNRLEKEVDI 179 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHccH
Confidence 56666666777777777666666555555543
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.29 E-value=2e-06 Score=87.70 Aligned_cols=91 Identities=25% Similarity=0.326 Sum_probs=56.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCC-CCCeEE-EcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHH
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIK-VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~-~G~~I~-i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~d 702 (779)
++.|+||+||||||+++++++++++. .| .|. +...+-|..+. ..|-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~-~i~t~e~~~E~~~~~---------------------------~~~~---- 50 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTH-HILTIEDPIEFVHES---------------------------KRSL---- 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCc-EEEEEcCCccccccC---------------------------ccce----
Confidence 68999999999999999999999865 34 432 22111111100 0010
Q ss_pred HhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 703 IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 703 i~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
+ .+.++|++..+++. ++++|+-++||++++||+. |.++...+.+.
T Consensus 51 i------~q~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~ 95 (198)
T cd01131 51 I------NQREVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTA 95 (198)
T ss_pred e------eecccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH
Confidence 0 02234443333332 5899999999999999996 67666555443
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.26 E-value=2.3e-06 Score=96.32 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=81.1
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHH
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY 690 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y 690 (779)
+++ . .+.+.+|++++|+|++|+|||||++.|.|..++..| .+ +++.|.. -+++|.+.
T Consensus 146 aID-~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~g-vI------~~iGerg----~ev~e~~~---------- 202 (432)
T PRK06793 146 SID-S-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADIN-VI------SLVGERG----REVKDFIR---------- 202 (432)
T ss_pred EEe-c-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeE-EE------EeCCCCc----ccHHHHHH----------
Confidence 444 4 599999999999999999999999999999988776 44 4444544 34444432
Q ss_pred HHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCCcCHHHH
Q 004004 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-------SNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 691 ~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly-------~~adI~LLDDp~SALDa~t~ 756 (779)
+.++.-++. .|.+=-.-.+-|.|+|+|.+.+.+.. .++-++++||+|...|+..+
T Consensus 203 -~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~re 264 (432)
T PRK06793 203 -KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRS 264 (432)
T ss_pred -HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHH
Confidence 111111111 22333445778999999999998877 57888999999999999744
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.25 E-value=1.1e-06 Score=95.74 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=36.2
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
+++.+++|+.++|+|++|||||||+++|++++++..| .+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~-iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDER-IITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcccc-EEEE
Confidence 4467889999999999999999999999999998888 5544
No 445
>PRK01889 GTPase RsgA; Reviewed
Probab=98.23 E-value=1.6e-06 Score=96.19 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------eEEEEccccccCCCcHHHHhccCCC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KKAYVPQSSWIQTGTIRENILFGKD 684 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------~iayV~Q~pwI~ngTIreNIlfG~~ 684 (779)
.+.-.+++|++++++|++|+|||||+++|+|+.++..| .|..++ .+.+++|.+++++..-..|+.+..+
T Consensus 187 ~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G-~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~~ 265 (356)
T PRK01889 187 VLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTG-AVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWDA 265 (356)
T ss_pred HHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccccee-eEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcccCc
Confidence 44456789999999999999999999999999999999 898754 4889999999999888888877654
Q ss_pred CCH-----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 004004 685 MRQ-----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 685 ~d~-----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ 738 (779)
.+. ..+.+..+.|...+-.-.-+.|-...-.-.-.+|| ++|..--+.++++
T Consensus 266 ~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 266 EDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred hhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 221 24555666665532111111111111000113454 8888888888765
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.20 E-value=1.2e-06 Score=88.32 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=39.7
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
-+.+.+++|+.++|+||+|||||||+++|+|++++..| .+.+.+
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~-~i~ied 60 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDER-IITIED 60 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC-EEEECC
Confidence 44577899999999999999999999999999999999 887765
No 447
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.17 E-value=2.6e-06 Score=94.20 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=64.2
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCC-CCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHcc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~ 698 (779)
.+++..+.|+||+||||||+++++++++++. +| .|. .+.+.+ -+..+ . ..|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~-~i~------tiEdp~-----------E~~~~-------~--~~~- 170 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAG-HII------TIEDPI-----------EYVHR-------N--KRS- 170 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCC-EEE------EEcCCh-----------hhhcc-------C--ccc-
Confidence 4578899999999999999999999988754 44 332 221110 00000 0 000
Q ss_pred chHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 699 L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
.+ .+.++|..+.+ -.=++++|+-++||++++||+. |.++....++.+..|
T Consensus 171 ---~i------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~tG 220 (343)
T TIGR01420 171 ---LI------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTAAETG 220 (343)
T ss_pred ---eE------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHHcC
Confidence 00 12234443322 2345889999999999999997 999888766655444
No 448
>PRK10869 recombination and repair protein; Provisional
Probab=98.17 E-value=1.3e-06 Score=102.35 Aligned_cols=57 Identities=26% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 720 NLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~----~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
.|||||+|||+|||++.. +|+++|||||+++||..++..+.+ .+..+-+ ..++.|+|
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~~~qvi~iTH 491 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGESTQVMCVTH 491 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEec
Confidence 699999999999999996 589999999999999999988765 3333211 23455666
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.14 E-value=7.8e-06 Score=79.06 Aligned_cols=101 Identities=22% Similarity=0.229 Sum_probs=63.9
Q ss_pred EEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhh
Q 004004 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (779)
Q Consensus 626 vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~ 705 (779)
++|+|++|+||||++..+++...+..| .+.|++++.-.- ..+++.. . ... ..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~-------~v~~~~~e~~~~--~~~~~~~---------------~--~~~--~~ 53 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGG-------KVVYVDIEEEIE--ELTERLI---------------G--ESL--KG 53 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCC-------EEEEEECCcchH--HHHHHHh---------------h--hhh--cc
Confidence 689999999999999999998876444 466776643211 1122210 0 000 00
Q ss_pred ccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 004004 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 706 Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t 755 (779)
.+ +....+......-+.++.++++.+++...+++++++||+.+-+|...
T Consensus 54 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~ 102 (165)
T cd01120 54 AL-DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALR 102 (165)
T ss_pred cc-ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHH
Confidence 01 11222233333455667778999999999999999999997665543
No 450
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.14 E-value=9.2e-06 Score=81.31 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=64.3
Q ss_pred EEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhh
Q 004004 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (779)
Q Consensus 626 vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~ 705 (779)
+.|.||+|+|||+|..-++-+.-. .| .++.|++= +.+.+.+.+-++..+.+ ++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g------~~v~~~s~-----------------e~~~~~~~~~~~~~g~~--~~~ 55 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RG------EPGLYVTL-----------------EESPEELIENAESLGWD--LER 55 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CC------CcEEEEEC-----------------CCCHHHHHHHHHHcCCC--hHH
Confidence 679999999999999877765443 33 23445531 12233333333333332 222
Q ss_pred c-cCCCCccccCCCCCCChHHHH-----HHHHHHH-HccCCCEEEEeCCCCCcC
Q 004004 706 W-ADGDLSVVGERGINLSGGQKQ-----RIQLARA-VYSNSDVYIFDDPFSAVD 752 (779)
Q Consensus 706 L-p~Gd~T~IGE~G~nLSGGQKQ-----RIaLARA-ly~~adI~LLDDp~SALD 752 (779)
+ ..|....+......+|+||+| +..+.++ .-.+|+++++|+|++.+|
T Consensus 56 l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 56 LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 2 245555566667789999999 4444444 456899999999999999
No 451
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.13 E-value=1.6e-06 Score=102.12 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHHHccC----CCEEEEeCCCCCcCHHHHHHHHHHHHhHHH-HHHHhHhcc
Q 004004 719 INLSGGQKQRIQLARAVYSN----SDVYIFDDPFSAVDAHTGTHLFKARTFSLF-HQLLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~----adI~LLDDp~SALDa~t~~~If~~~i~g~L-~~~~~~~~~ 777 (779)
..||||||||++||||+... |+++|||||+++||..+...+.+ .+..+- ...++.|+|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~~~~vi~iTH 501 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSERHQVLCVTH 501 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhcCCEEEEEEC
Confidence 47999999999999999875 69999999999999999887765 343321 223455555
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.09 E-value=7.2e-06 Score=84.81 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=71.7
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEEcCeEEEEccccccC-CCcHHHHhccCCCCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMR 686 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i~g~iayV~Q~pwI~-ngTIreNIlfG~~~d 686 (779)
+++.+ |+++++++|++++|+||+|+||||+++.+.+..-. .-| . .+..+-+-++--.-|| .-.-+||+..|...=
T Consensus 17 ~~v~n-di~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G-~-~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF 93 (218)
T cd03286 17 SFVPN-DVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG-M-DVPAKSMRLSLVDRIFTRIGARDDIMKGESTF 93 (218)
T ss_pred CeEEe-eeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC-C-ccCccccEeccccEEEEecCcccccccCcchH
Confidence 46777 99999999999999999999999999988765321 123 1 1111111111111111 112334444332210
Q ss_pred HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 687 ~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
. .+-+|++-.=....+++++|||||+++.|+..+..+....+..
T Consensus 94 ~------------------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~ 137 (218)
T cd03286 94 M------------------------------------VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEY 137 (218)
T ss_pred H------------------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHH
Confidence 0 1111221111111568999999999999999999998876655
Q ss_pred HHH
Q 004004 767 LFH 769 (779)
Q Consensus 767 ~L~ 769 (779)
+.+
T Consensus 138 L~~ 140 (218)
T cd03286 138 LVK 140 (218)
T ss_pred HHH
Confidence 443
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=2.7e-06 Score=97.02 Aligned_cols=133 Identities=14% Similarity=0.191 Sum_probs=81.2
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhcc-CCCCCHHHHHHHHH
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF-GKDMRQSFYEEVLE 695 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlf-G~~~d~~~y~~vl~ 695 (779)
+..+++|+.+++|||+|+||||++..|.+.+....| . .+++++++|+ |.-+..||+.+ ++-+.-. ...+-+
T Consensus 250 ~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~----~kV~LI~~Dt--~RigA~EQLr~~AeilGVp-v~~~~~ 321 (484)
T PRK06995 250 DALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG-A----SKVALLTTDS--YRIGGHEQLRIYGKILGVP-VHAVKD 321 (484)
T ss_pred cccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC-C----CeEEEEeCCc--cchhHHHHHHHHHHHhCCC-eeccCC
Confidence 334567899999999999999999999999887777 3 2678999998 67788999964 3211000 000000
Q ss_pred HccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC-----CEEEEeCCCCCcCHHHHHHHH
Q 004004 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-----DVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a-----dI~LLDDp~SALDa~t~~~If 760 (779)
...+...+..+.+.|...|..-|.+-. ..++.-+.+.++++ .+|+||..+..-|.....+-|
T Consensus 322 ~~Dl~~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f 388 (484)
T PRK06995 322 AADLRLALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY 388 (484)
T ss_pred chhHHHHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh
Confidence 111222445566677778877554321 11223333334443 678888887775554333333
No 454
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.97 E-value=6e-06 Score=84.72 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=37.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG 673 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ng 673 (779)
|+|+.++|+|++|||||||+++|.+.+++ +.+++++|+.+..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------cCCeEecccccccCh
Confidence 68999999999999999999999998764 246788888887654
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=97.97 E-value=7.2e-06 Score=102.06 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=47.0
Q ss_pred CCCCCChHHHHHHHH------HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-----HHhHhcc
Q 004004 717 RGINLSGGQKQRIQL------ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-----LLFSINH 777 (779)
Q Consensus 717 ~G~nLSGGQKQRIaL------ARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-----~~~~~~~ 777 (779)
.+..||||||||++| ||+++++|++++|||||++||......+.+ .+...+++ .++.|+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~-~l~~~~~~~~~~~~ii~ish 868 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKD-IIEYSLKDSSDIPQVIMISH 868 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEC
Confidence 456899999999975 599999999999999999999999888655 34333333 2455666
No 456
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.93 E-value=3.3e-06 Score=86.19 Aligned_cols=59 Identities=24% Similarity=0.477 Sum_probs=43.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcccc------------CCCCCeEEEcCe-EE---------EEccccccCCCcHHHH
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP------------RISGAAIKVHGK-KA---------YVPQSSWIQTGTIREN 678 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~------------~~~G~~I~i~g~-ia---------yV~Q~pwI~ngTIreN 678 (779)
++|++++|+||+|||||||++.|.+.++ |..| + ++|. .. .+.|..+++.+|+.+|
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~g-e--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPG-E--VDGVDYFFVSKEEFEEMIENGEFLEWAEVFGN 79 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCC-C--cCCCeeEEcCHHHHHHHHHcCCcEEEEEECCc
Confidence 5899999999999999999999999986 5566 4 2332 12 2345566777777777
Q ss_pred hccCC
Q 004004 679 ILFGK 683 (779)
Q Consensus 679 IlfG~ 683 (779)
.+|.
T Consensus 80 -~y~~ 83 (205)
T PRK00300 80 -YYGT 83 (205)
T ss_pred -cccC
Confidence 3554
No 457
>PRK00064 recF recombination protein F; Reviewed
Probab=97.92 E-value=9.4e-06 Score=90.45 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 719 INLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly---------~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
..+|+||+|+++||+++. .+|+|+|||||+|.||++..+.+++.
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~ 324 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLER 324 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHH
Confidence 579999999999999884 79999999999999999999888763
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.90 E-value=2.1e-05 Score=80.62 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=65.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCC---cH--HHHhccCCC--CCHHHHHHH
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG---TI--RENILFGKD--MRQSFYEEV 693 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ng---TI--reNIlfG~~--~d~~~y~~v 693 (779)
+++..++|+|++|||||||.+.|.+.++ + +.+++++|+.+..+. +. +.++.|+.| +|.+.+.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~------~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---D------ESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEH 74 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---C------CceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHH
Confidence 4788999999999999999999999872 2 468889999988755 23 334455544 344444443
Q ss_pred HHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 004004 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t 755 (779)
++.+-.|.. +.-...+.+.|.+..-. .-..+.+++++|=|+..-+++.
T Consensus 75 ---------l~~l~~~~~--v~~p~~d~~~~~~~~~~---~~~~~~~~vivEg~~l~~~~~~ 122 (209)
T PRK05480 75 ---------LKALKAGKA--IEIPVYDYTEHTRSKET---IRVEPKDVIILEGILLLEDERL 122 (209)
T ss_pred ---------HHHHHcCCc--cccCcccccccccCCCe---EEeCCCCEEEEEeehhcCchhH
Confidence 333333321 11111233333221100 0124567888887776555443
No 459
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.84 E-value=1.6e-05 Score=81.91 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~a---dI~LLDDp~SALDa~t~~~If~ 761 (779)
.+|.|+||.+.|+-+++... .++++|||=++|+++..+++.+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~ 280 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE 280 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH
Confidence 46999999999999998776 8999999999999999988873
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.84 E-value=6.1e-05 Score=78.72 Aligned_cols=109 Identities=18% Similarity=0.088 Sum_probs=67.9
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHh-ccCCCCCHHHHHHHHHHc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGC 697 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNI-lfG~~~d~~~y~~vl~ac 697 (779)
=+++|+.+.|.|++|||||+|...++-+.-. +| .++.|++.+--. ..+.+|. .||-+.++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g------~~~~y~~~e~~~--~~~~~~~~~~g~~~~~---------- 81 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG------KKVYVITTENTS--KSYLKQMESVKIDISD---------- 81 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC------CEEEEEEcCCCH--HHHHHHHHHCCCChhH----------
Confidence 4789999999999999999999998744322 34 356777653211 1122222 23322111
Q ss_pred cchHHHhhccCCCCcccc---CCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCCcCH
Q 004004 698 ALNQDIEMWADGDLSVVG---ERGINLSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDA 753 (779)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IG---E~G~nLSGGQKQRIaLARAly~--~adI~LLDDp~SALDa 753 (779)
. +..|....+. ++-...|.++++.+..++.... +++++++|+|++.+|.
T Consensus 82 ----~---~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 82 ----F---FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred ----H---HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 0 0112111111 1223457889999999999997 9999999999965553
No 461
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.82 E-value=2.6e-05 Score=86.59 Aligned_cols=77 Identities=27% Similarity=0.300 Sum_probs=53.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCC--CCCeE-EEc--------C---eEEEEccccc-----cCCCcHHHHhcc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAI-KVH--------G---KKAYVPQSSW-----IQTGTIRENILF 681 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~--~G~~I-~i~--------g---~iayV~Q~pw-----I~ngTIreNIlf 681 (779)
++|.+++|+||+||||||++++|++++.+. ++..| .+. + ..+.|+|... -|..++|+++..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 489999999999999999999999998532 22133 221 1 2467788643 466778877664
Q ss_pred -------CCCCCHHHHHHHHHHc
Q 004004 682 -------GKDMRQSFYEEVLEGC 697 (779)
Q Consensus 682 -------G~~~d~~~y~~vl~ac 697 (779)
|.--|++.++.+++++
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHHHH
Confidence 3323677778888884
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=1.7e-05 Score=88.36 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=46.3
Q ss_pred cCCCCccccCCCC----CCChHHHHHHHHHHHHcc---------CCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 707 ADGDLSVVGERGI----NLSGGQKQRIQLARAVYS---------NSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 707 p~Gd~T~IGE~G~----nLSGGQKQRIaLARAly~---------~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|+-||-.+--+|. .+|.||++++.||.++.+ +|+|+|||||+|.||++..+.+.+.
T Consensus 258 PHRdDl~~~~~g~~~~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~ 326 (365)
T TIGR00611 258 PHRDDLRFRLNGLPVEDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAEL 326 (365)
T ss_pred cchhceEEEECCEEHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHH
Confidence 5555544444554 599999999999999999 9999999999999999988887653
No 463
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.79 E-value=4.8e-05 Score=85.93 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=50.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
..++.++++..+.. ...+++ .++ .|.+|++++|+|++|||||||++.|.|..++..| .+...
T Consensus 138 ~~~~r~~v~~~l~T-----Gi~aID-~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~g-vv~li 199 (450)
T PRK06002 138 PAMTRARVETGLRT-----GVRVID-IFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTV-VIALV 199 (450)
T ss_pred CCeEeecceEEcCC-----CcEEee-eec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCee-eeeec
Confidence 45777888877754 245666 664 8999999999999999999999999999999888 77654
No 464
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.79 E-value=1.3e-05 Score=102.36 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=46.8
Q ss_pred CCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 716 ERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAl----y~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
.+...||||||||++||||+ +++|++||||||+++||..+...+.+ +|...-+ ..++.|+|
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~~~~~i~~sh 1150 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSKNTQFIVITH 1150 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhccCCEEEEEEc
Confidence 35568999999999999998 67889999999999999999888755 4433211 12444555
No 465
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.77 E-value=2.1e-05 Score=99.02 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=47.9
Q ss_pred CCCCChHHHHHHHHHHHHcc--------CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhccc
Q 004004 718 GINLSGGQKQRIQLARAVYS--------NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINHI 778 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~--------~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~~ 778 (779)
-.+|||||++|++||||+.. +|++++|||||++||+.+-..+.+ .+..+-++ .+.-|+|+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~ 1016 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHV 1016 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecH
Confidence 46799999999999999995 899999999999999999988775 45444322 25556664
No 466
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.76 E-value=1.4e-06 Score=104.02 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhchHHHHHhchHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 449 AKDARIKATSETLKSMRVLKLLSWEQEFLKKL---------LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGV 519 (779)
Q Consensus 449 ~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i---------~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~lv~~~~f~~ 519 (779)
.+....+.+.|++.++.+||..+-|+.....+ .++.+...+..+.......+...+... ....++.+++
T Consensus 38 ~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~--~~~~il~ig~ 115 (644)
T PRK10733 38 LQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFIS--WFPMLLLIGV 115 (644)
T ss_pred HHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHH--HHHHHHHHHH
Confidence 33455567788899999999887665432222 111111111100000111111112111 2233455777
Q ss_pred HHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeee
Q 004004 520 CILLKTPLTSG---AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAG 596 (779)
Q Consensus 520 ~~l~~~~Lt~g---~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~ 596 (779)
+.++.+.++.| .++++..+-..+..| ..+...+..+.....+.+|+.+..+......
T Consensus 116 ~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------------------- 175 (644)
T PRK10733 116 WIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------------------- 175 (644)
T ss_pred HHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-------------------
Confidence 77777778777 555555544455555 5556666677777777788877665321100
Q ss_pred EEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 597 EYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 597 sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
..+ ....++++| +.++||+|+||||+.+++.++..
T Consensus 176 --------------~~~-~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 --------------RFQ-KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred --------------HHH-hcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001 222345677 99999999999999999999875
No 467
>PRK03918 chromosome segregation protein; Provisional
Probab=97.75 E-value=2.3e-05 Score=97.53 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=44.7
Q ss_pred CCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 719 INLSGGQKQ------RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 719 ~nLSGGQKQ------RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
..||||||| |++|||++..+|+++||||||+++|++...++.+ .+.....+ .++.|+|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~~~~~iiiith 852 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERYLRKIPQVIIVSH 852 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHhcCCEEEEEEC
Confidence 579999999 5666778999999999999999999999988765 34443332 2455555
No 468
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.68 E-value=0.00011 Score=71.02 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=34.7
Q ss_pred ccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q 004004 712 SVVGERGINLSGGQKQRIQLARA-----VYSNSDVYIFDDPFSAVDAHTGTHLFKAR 763 (779)
Q Consensus 712 T~IGE~G~nLSGGQKQRIaLARA-----ly~~adI~LLDDp~SALDa~t~~~If~~~ 763 (779)
..++.+.-.++++++++.....+ .+..++++ |+||.|.+.-+++++.+
T Consensus 114 i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 114 LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALI 166 (170)
T ss_pred EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHH
Confidence 34666666789999888766555 24456666 99999998888877643
No 469
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=4.3e-05 Score=96.58 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 718 GINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~----------~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-.+||||+++|++||+|+.. +|++++|||||++||+++...+.+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~ 1001 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG 1001 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH
Confidence 36899999999999999985 799999999999999999888765
No 470
>PRK15494 era GTPase Era; Provisional
Probab=97.62 E-value=4.4e-05 Score=84.41 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=48.2
Q ss_pred CCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCc-------EEEEEcCCCCChhHHHHHHhccc
Q 004004 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGS-------KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 587 ~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~-------~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
..+.+++++++|+|+. ..+.++ .+++++++|+ +++|+|++|+|||||++.++|+-
T Consensus 15 ~~g~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVREDA-----STGSTS-KLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCCC-----Cccccc-CCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3467899999999985 256788 8999999999 99999999999999999999874
No 471
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.61 E-value=0.0002 Score=72.02 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=37.7
Q ss_pred cccCCCCCCChHHHHHHH--HHHHHcc-CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 713 VVGERGINLSGGQKQRIQ--LARAVYS-NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIa--LARAly~-~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
.++.+--.+|+||+||+. +++.+-. +++++ |+||+|...-+.+++. +...++
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~-i~~~~~ 194 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAA-IAKWLA 194 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHH-HHHHhc
Confidence 456666678999999987 7777755 34544 9999999988888764 444443
No 472
>PRK14079 recF recombination protein F; Provisional
Probab=97.61 E-value=5.8e-05 Score=83.73 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly---------~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-+|+||+++++||+++. .+++++|||||+|.||.+....+.+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~ 313 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLA 313 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHH
Confidence 48999999999999997 8999999999999999999888764
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.59 E-value=9.1e-05 Score=77.71 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHh
Q 004004 623 GSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iL 644 (779)
|+..+|+||.|+|||+|...+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999998775
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=8.6e-05 Score=60.80 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=26.1
Q ss_pred CCcEEeeC-CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 615 TDKMKIMK-GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 615 ~inl~I~~-G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+-.+++.+ |+.+.|+|++||||||++.||.=.+
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566664 6799999999999999999886433
No 475
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.52 E-value=0.0001 Score=83.16 Aligned_cols=69 Identities=22% Similarity=0.126 Sum_probs=53.5
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE---EcC-------------------eEEEEccc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK---VHG-------------------KKAYVPQS 667 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~---i~g-------------------~iayV~Q~ 667 (779)
.+++ ++ +++.+|++++|+|++|+|||||++.|.|..++..+ .+- .+| .++|++|+
T Consensus 144 ~aID-~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~-vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 144 NAIN-GL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV-VVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred eecc-ce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE-EEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 4677 88 99999999999999999999999999999887653 222 111 37889998
Q ss_pred cccC-CCcHHHHhcc
Q 004004 668 SWIQ-TGTIRENILF 681 (779)
Q Consensus 668 pwI~-ngTIreNIlf 681 (779)
...+ .-++.+|..+
T Consensus 221 ~s~~~rl~a~e~a~~ 235 (434)
T PRK07196 221 ESPLMRIKATELCHA 235 (434)
T ss_pred CChhhhHHHHHHHHH
Confidence 6544 5677777753
No 476
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.51 E-value=5.8e-05 Score=96.50 Aligned_cols=45 Identities=27% Similarity=0.255 Sum_probs=39.5
Q ss_pred CCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 717 RGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly----~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+...||||||++++||+++. .+||+|+||||+++||+.....+.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~ 1119 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK 1119 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH
Confidence 34579999999999999996 5889999999999999998877654
No 477
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.49 E-value=0.00015 Score=75.22 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=48.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhc----cCC--CCCHHHHHHHHHHcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL----FGK--DMRQSFYEEVLEGCA 698 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIl----fG~--~~d~~~y~~vl~ac~ 698 (779)
+++|.|++|||||||.+.|.+.+.+..+ .+++.+++++.+-.....++..- .|. .+|-+.+.+.++...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~-----~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~ 75 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPD-----HPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIK 75 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCC-----CCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHH
Confidence 4799999999999999999999876322 14577888888866555444331 232 356666666665554
Q ss_pred c
Q 004004 699 L 699 (779)
Q Consensus 699 L 699 (779)
.
T Consensus 76 ~ 76 (220)
T cd02025 76 S 76 (220)
T ss_pred C
Confidence 3
No 478
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.41 E-value=0.00053 Score=84.28 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=30.1
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
.|+.+...-.+.|+|++|||||||++.|+..+....|..+
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~~~~~~v 488 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRRYAGAQI 488 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhcccccCCCEE
Confidence 4555544446899999999999999999988776545233
No 479
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.40 E-value=0.00063 Score=72.55 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=58.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccch
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~ 700 (779)
.++..+.|+|++||||||++++++.++++.....+.+...+-|-
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~------------------------------------ 121 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ------------------------------------ 121 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec------------------------------------
Confidence 45668999999999999999999998875332133333211110
Q ss_pred HHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHh
Q 004004 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTF 765 (779)
Q Consensus 701 ~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~ 765 (779)
+|+-.++++.+. +|.-.-=.+..|+-+|||+++++|.- |.+++....+.+..
T Consensus 122 -----~~~~~q~~v~~~-----~~~~~~~~l~~~lR~~PD~i~vgEiR---~~e~a~~~~~aa~t 173 (264)
T cd01129 122 -----IPGINQVQVNEK-----AGLTFARGLRAILRQDPDIIMVGEIR---DAETAEIAVQAALT 173 (264)
T ss_pred -----CCCceEEEeCCc-----CCcCHHHHHHHHhccCCCEEEeccCC---CHHHHHHHHHHHHc
Confidence 011112233221 12223345667777899999999987 66666655554443
No 480
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.40 E-value=0.0001 Score=73.55 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
|+.++|+||+||||||+++.|.+.++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 6789999999999999999999987643
No 481
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.34 E-value=0.00089 Score=66.61 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=59.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-EcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHH-Hcc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLE-GCA 698 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~-ac~ 698 (779)
++|+.++++|++||||||+.+.|.+.+....+ .+. +++ +++|+++..+-.++++.-++..+ .+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~-~v~~id~-------------D~~~~~~~~~~~~~~~~r~~~~~~~~~ 67 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGY-PVEVLDG-------------DAVRTNLSKGLGFSKEDRDTNIRRIGF 67 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEcC-------------ccHHHHHhcCCCCChhhHHHHHHHHHH
Confidence 47999999999999999999999999876555 433 332 35677776554443322122222 122
Q ss_pred chHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 004004 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (779)
Q Consensus 699 L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp 747 (779)
+.+.+ ..+|.. .+-+ +.+....++ .-.|.+..+-.++.||=|
T Consensus 68 ~a~~~--~~~g~~-vi~~-~~~~~~~~~---~~l~~~~~~~~~v~l~~~ 109 (175)
T PRK00889 68 VANLL--TRHGVI-VLVS-AISPYRETR---EEVRANIGNFLEVFVDAP 109 (175)
T ss_pred HHHHH--HhCCCE-EEEe-cCCCCHHHH---HHHHhhcCCeEEEEEcCC
Confidence 22222 134543 3322 233322223 334555566667777744
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.32 E-value=0.0002 Score=81.34 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=58.9
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----EE-EEccccccCCCcHHHHhccCCC
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----KA-YVPQSSWIQTGTIRENILFGKD 684 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~----ia-yV~Q~pwI~ngTIreNIlfG~~ 684 (779)
.+++ ++ +++++|++++|+|++|+|||||++.|.|.+++..| .|.+.|. +. ++.. .+-...++..|.+-.+
T Consensus 147 ~vid-~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~g-vI~~~Gerg~ev~e~~~~--~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 147 RAID-SL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLN-VIALIGERGREVREFIER--DLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhh-ee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEEecCCccHHHHHHh--hcChhhhcCeEEEEEC
Confidence 4577 77 99999999999999999999999999999999888 7766431 11 1000 0111223344443322
Q ss_pred CC---HHHHHHHHHHccchHHHh
Q 004004 685 MR---QSFYEEVLEGCALNQDIE 704 (779)
Q Consensus 685 ~d---~~~y~~vl~ac~L~~di~ 704 (779)
.| -+++..+.-+|...+-+.
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr 244 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFR 244 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 356666666666666554
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.31 E-value=0.0003 Score=90.74 Aligned_cols=45 Identities=31% Similarity=0.496 Sum_probs=39.4
Q ss_pred CCCCCChHHHHHHH----HHHH--Hc------cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 717 RGINLSGGQKQRIQ----LARA--VY------SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 717 ~G~nLSGGQKQRIa----LARA--ly------~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+...||||||||++ +|+| .| .+|++++|||||+++|+++...+++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ 1300 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFG 1300 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence 46789999999997 6877 45 4999999999999999999998875
No 484
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.30 E-value=0.00083 Score=62.96 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+.+..+.|+||+|+||||+++.+.+++.....
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~ 48 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGA 48 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 35788999999999999999999999864333
No 485
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.29 E-value=0.00054 Score=76.36 Aligned_cols=125 Identities=23% Similarity=0.280 Sum_probs=90.7
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHh-ccccCCCCCeEEEcCeEEEEcc-ccccCCCcHHHHhccCCCCCHHHHHHHHH
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENILFGKDMRQSFYEEVLE 695 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iL-Ge~~~~~G~~I~i~g~iayV~Q-~pwI~ngTIreNIlfG~~~d~~~y~~vl~ 695 (779)
+-||+| .+.|||.---||||||++|. |-|+...| +|+=-.|.- ++. .| .++--+.++
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG-----DGRE~VVT~~~av----ki-----------rAEDGR~V~ 298 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG-----DGREFVVTDPDAV----KI-----------RAEDGRSVE 298 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC-----CCceEEEECCCce----EE-----------EecCCceEe
Confidence 779999 99999999999999999997 77887777 343222211 000 00 011123466
Q ss_pred HccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q 004004 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKART 764 (779)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i 764 (779)
.+.+..+|..||.|.+|.- =-=.|=||---|=-+|..|+-..++++|+||=|||----.....+++++
T Consensus 299 ~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv 366 (448)
T PF09818_consen 299 GVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALV 366 (448)
T ss_pred CccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhh
Confidence 6789999999999999873 2335779999999999999999999999999999975444333334433
No 486
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.27 E-value=0.0012 Score=76.36 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchH
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (779)
++.++.|+||+||||||++++++.++++.....+.+...+=|.-
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~------------------------------------ 284 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI------------------------------------ 284 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec------------------------------------
Confidence 45589999999999999999999998754431344433322211
Q ss_pred HHhhccCCCCccccCC-CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 702 DIEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 702 di~~Lp~Gd~T~IGE~-G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|+--++++.++ |.+.+ =+|-.++-+|||++++.|.- |.+|++...+....|
T Consensus 285 -----~~~~q~~v~~~~g~~f~------~~lr~~LR~dPDvI~vGEiR---d~eta~~a~~aa~tG 336 (486)
T TIGR02533 285 -----EGIGQIQVNPKIGLTFA------AGLRAILRQDPDIIMVGEIR---DLETAQIAIQASLTG 336 (486)
T ss_pred -----CCCceEEEccccCccHH------HHHHHHHhcCCCEEEEeCCC---CHHHHHHHHHHHHhC
Confidence 00112223221 22222 34455677899999999997 888887766655544
No 487
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.26 E-value=0.0011 Score=65.85 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=71.3
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEcCeEEEEccccccCCCcHHHHhccC--C-CC-----CH
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFG--K-DM-----RQ 687 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG--~-~~-----d~ 687 (779)
|++++ -++.|+|.+||||||||.+|.--+ ++..| .=...|. -......+.+|+..- + +. -.
T Consensus 33 LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg-~~n~~~~-------~~~s~s~l~~~~k~~~~~k~~~g~FlRA 103 (233)
T COG3910 33 LEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGG-GKNFKGE-------LDASHSALVDYAKLHKRKKPPIGFFLRA 103 (233)
T ss_pred ccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCC-CcCcCcc-------cccccchHHHhHHHhhcCCCCcceEEeh
Confidence 44433 478899999999999999997443 23333 2222221 112233455666432 1 11 12
Q ss_pred HHHHHHHHHccchHHHhhccCCCCccccCC-CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 688 SFYEEVLEGCALNQDIEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~-G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
|....+.. -.+|+..-.+ .|-+ =..-|-|+-=-=-..|.+ .+.-||+||||=|||-+.-.-. +.+
T Consensus 104 Es~yn~as---~~De~~~e~~-----~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQle-----lla 169 (233)
T COG3910 104 ESFYNVAS---YLDEADGEAN-----YGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLE-----LLA 169 (233)
T ss_pred hHHHHHHH---HHHhhhhhcc-----cCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHH-----HHH
Confidence 33333333 1122221110 1111 134577765544445554 6788999999999999865433 445
Q ss_pred HHHHHHhH
Q 004004 767 LFHQLLFS 774 (779)
Q Consensus 767 ~L~~~~~~ 774 (779)
.|+++..|
T Consensus 170 ~l~~la~s 177 (233)
T COG3910 170 ILRDLADS 177 (233)
T ss_pred HHHHHHhc
Confidence 56665543
No 488
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.26 E-value=0.00036 Score=61.86 Aligned_cols=54 Identities=33% Similarity=0.458 Sum_probs=35.3
Q ss_pred CCCCccccCCCCCCChHHHHH-HHH--HHHH---ccC-------CCEEEEeCCCCCcCHHHHHHHHH
Q 004004 708 DGDLSVVGERGINLSGGQKQR-IQL--ARAV---YSN-------SDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 708 ~Gd~T~IGE~G~nLSGGQKQR-IaL--ARAl---y~~-------adI~LLDDp~SALDa~t~~~If~ 761 (779)
+|.+...-..-.++||||||. +++ |-|+ |++ +++++|||||+.+|+++.+.+++
T Consensus 20 ~g~~~~~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~ 86 (90)
T PF13558_consen 20 DGNEVETSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMD 86 (90)
T ss_dssp TEECTCEEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHH
T ss_pred CCceeeeeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHH
Confidence 343333334456899999954 322 2222 333 68999999999999999987654
No 489
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.25 E-value=0.73 Score=54.42 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004004 342 ANRIGIRVRSALTVLIYKRSM 362 (779)
Q Consensus 342 ~~r~~~~lR~~L~~~iy~K~L 362 (779)
..++..++|..+...+++...
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~ 96 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHV 96 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCH
Confidence 455667888888888887654
No 490
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.24 E-value=0.00054 Score=69.68 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=27.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
+++|+|++|+|||||+++|+|...+.+| .+..+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~-~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEG-AAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCC-ccccC
Confidence 5899999999999999999998777777 55443
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.24 E-value=0.00049 Score=71.74 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
++..+++|+|++|||||||.+.|.+.+++.+| .+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g-~~~ 65 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE-LPA 65 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC-Cce
Confidence 35679999999999999999999999999888 643
No 492
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.23 E-value=0.0018 Score=64.94 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=64.0
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHH-cc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG-CA 698 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~a-c~ 698 (779)
.++|+++.++|++||||||+.+.|.++++......+.++| ..+|..+.-+..++++.-.+..+. ..
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~-------------d~~r~~l~~~~~~~~~~~~~~~~~~~~ 81 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG-------------DNVRHGLNKDLGFSEEDRKENIRRIGE 81 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC-------------hHHHhhhccccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999998643321233432 345555443344544332322222 11
Q ss_pred chHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE--EEEeCC
Q 004004 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV--YIFDDP 747 (779)
Q Consensus 699 L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI--~LLDDp 747 (779)
+...+ +..|. ..|-+ .. ++.+.+| ..+|++..+.+. +.+|=|
T Consensus 82 ~~~~~--~~~G~-~VI~d-~~--~~~~~~r-~~~~~~~~~~~~~~v~l~~~ 125 (184)
T TIGR00455 82 VAKLF--VRNGI-IVITS-FI--SPYRADR-QMVRELIEKGEFIEVFVDCP 125 (184)
T ss_pred HHHHH--HcCCC-EEEEe-cC--CCCHHHH-HHHHHhCcCCCeEEEEEeCC
Confidence 21222 34564 44433 23 4557777 888888887655 666644
No 493
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.22 E-value=0.00053 Score=73.87 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc--CCCCCeEEEcCeEEEEccccccCCCcHHHHhc----cCC--CCCHHHHHHHHH
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHGKKAYVPQSSWIQTGTIRENIL----FGK--DMRQSFYEEVLE 695 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~--~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIl----fG~--~~d~~~y~~vl~ 695 (779)
.+++|.|++||||||+.+.|.+.+. +.+| .+..++++.+...-..++..- +|- .+|-+.+.+.++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g-------~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHR-------KVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCC-------ceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHH
Confidence 3799999999999999999999887 3344 466778888777666666543 222 245555555444
Q ss_pred H
Q 004004 696 G 696 (779)
Q Consensus 696 a 696 (779)
.
T Consensus 136 ~ 136 (290)
T TIGR00554 136 D 136 (290)
T ss_pred H
Confidence 4
No 494
>PRK05922 type III secretion system ATPase; Validated
Probab=97.22 E-value=0.00019 Score=81.00 Aligned_cols=42 Identities=36% Similarity=0.457 Sum_probs=37.5
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
-+++.+|++++|+|++|+|||||++.|.|..++..| .+...|
T Consensus 151 ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~g-vi~liG 192 (434)
T PRK05922 151 FLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTIN-VIALIG 192 (434)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCce-EEEEeC
Confidence 499999999999999999999999999999998888 665444
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.15 E-value=0.00032 Score=70.72 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
.|+.++|+||+|||||||++.|.+...+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3789999999999999999999988653
No 496
>PRK08149 ATP synthase SpaL; Validated
Probab=97.13 E-value=0.0004 Score=78.35 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=35.0
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
.+++ ++ +++.+||+++|+|++|+|||||++.|.+..++.
T Consensus 140 ~aid-~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~d 178 (428)
T PRK08149 140 RAID-GL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEAD 178 (428)
T ss_pred EEEe-ee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCC
Confidence 4677 77 999999999999999999999999999977654
No 497
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.12 E-value=0.00033 Score=70.15 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+|+.++|+|++||||||++++|.|.+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999999998754
No 498
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.001 Score=76.48 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=66.2
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHh-ccCCCCCHHHHHHHHHHccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCAL 699 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNI-lfG~~~d~~~y~~vl~ac~L 699 (779)
++|+.++++||+|+||||++..|...+....+ ..+++++..|++=.. . +|.+ .+++...- .+..+-....+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~-----gkkVaLIdtDtyRig-A-~EQLk~ya~iLgv-~v~~a~d~~~L 419 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHA-----PRDVALVTTDTQRVG-G-REQLHSYGRQLGI-AVHEADSAESL 419 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCceEEEeccccccc-H-HHHHHHhhcccCc-eeEecCcHHHH
Confidence 47999999999999999999999887643322 135778887765321 1 2222 11111100 00001111223
Q ss_pred hHHHhhccCCCCccccCCCCCCChHHHHHH-HH--HHHHccCCCEEEEeCCCCCcCHH
Q 004004 700 NQDIEMWADGDLSVVGERGINLSGGQKQRI-QL--ARAVYSNSDVYIFDDPFSAVDAH 754 (779)
Q Consensus 700 ~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI-aL--ARAly~~adI~LLDDp~SALDa~ 754 (779)
.+.++.+.+.|.-.|-.-|.+ ...+..+ .| -++.....+++++|-..+..|..
T Consensus 420 ~~aL~~l~~~DLVLIDTaG~s--~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 420 LDLLERLRDYKLVLIDTAGMG--QRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred HHHHHHhccCCEEEecCCCcc--hhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 344445555454555555543 1111111 11 13344668899998877766654
No 499
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.00074 Score=75.08 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=46.5
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHh
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI 679 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNI 679 (779)
++++ +.++.+++|+.++++||+|+||||++..|.+.+....| . .+++++..+.+-. .-.|++
T Consensus 125 ~~~~-~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~----~~V~lit~D~~R~--ga~EqL 186 (374)
T PRK14722 125 PVLD-SEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG-A----SKVALLTTDSYRI--GGHEQL 186 (374)
T ss_pred hhhc-CCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-C----CeEEEEecccccc--cHHHHH
Confidence 3455 66778899999999999999999999999998754445 2 3678888777622 334555
No 500
>PLN02796 D-glycerate 3-kinase
Probab=97.12 E-value=0.00017 Score=78.82 Aligned_cols=48 Identities=10% Similarity=0.211 Sum_probs=36.9
Q ss_pred cccccCCcEEe---eCCcE-----EEEEcCCCCChhHHHHHHhccccCC---CCCeEEEcC
Q 004004 610 PTIKLTDKMKI---MKGSK-----VAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG 659 (779)
Q Consensus 610 ~~L~~~inl~I---~~G~~-----vaIvG~sGSGKSTLL~~iLGe~~~~---~G~~I~i~g 659 (779)
.+++ +++..+ ++|+. ++|+|++|||||||++.|.+++++. .| .|.+++
T Consensus 80 ~il~-~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g-~IsiDd 138 (347)
T PLN02796 80 WCED-QLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAA-SLSIDD 138 (347)
T ss_pred HHHH-HHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCcee-EEEECC
Confidence 3555 666666 56776 9999999999999999999999864 34 455554
Done!