Query 004004
Match_columns 779
No_of_seqs 490 out of 3178
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.3E-76 1.8E-80 742.7 54.4 549 222-777 2-611 (1321)
2 4a82_A Cystic fibrosis transme 100.0 2.2E-70 7.6E-75 640.7 53.8 503 267-777 6-534 (578)
3 3qf4_A ABC transporter, ATP-bi 100.0 6.6E-69 2.3E-73 628.8 59.8 502 263-777 11-536 (587)
4 3qf4_B Uncharacterized ABC tra 100.0 1.8E-69 6E-74 635.3 51.8 497 269-777 31-548 (598)
5 3b5x_A Lipid A export ATP-bind 100.0 2.8E-66 9.7E-71 606.7 64.9 497 267-777 17-537 (582)
6 3b60_A Lipid A export ATP-bind 100.0 2.2E-66 7.5E-71 607.6 59.9 496 268-777 18-537 (582)
7 2yl4_A ATP-binding cassette SU 100.0 5.1E-66 1.7E-70 606.0 62.6 501 268-777 12-540 (595)
8 4f4c_A Multidrug resistance pr 100.0 1.1E-64 3.9E-69 639.6 47.1 498 272-777 749-1274(1321)
9 3g5u_A MCG1178, multidrug resi 100.0 4.8E-62 1.6E-66 614.3 53.0 499 272-777 45-583 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 6.4E-56 2.2E-60 558.6 48.0 488 269-762 699-1213(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.8E-47 6E-52 411.3 15.2 217 553-777 15-247 (306)
12 2pze_A Cystic fibrosis transme 100.0 4.8E-41 1.6E-45 347.9 19.6 170 589-764 5-174 (229)
13 2cbz_A Multidrug resistance-as 100.0 1.3E-40 4.3E-45 346.5 17.1 168 590-763 3-170 (237)
14 2ff7_A Alpha-hemolysin translo 100.0 2.5E-39 8.4E-44 338.8 18.0 167 589-761 6-186 (247)
15 2ghi_A Transport protein; mult 100.0 4.8E-39 1.6E-43 339.1 17.4 182 589-777 16-212 (260)
16 1mv5_A LMRA, multidrug resista 100.0 1.4E-39 4.8E-44 339.9 11.6 164 591-761 2-180 (243)
17 2bbs_A Cystic fibrosis transme 100.0 6.3E-38 2.1E-42 335.1 16.5 186 565-763 17-202 (290)
18 3gd7_A Fusion complex of cysti 100.0 3.8E-38 1.3E-42 349.0 14.9 168 588-762 17-197 (390)
19 2ixe_A Antigen peptide transpo 100.0 1.6E-37 5.4E-42 329.4 18.4 183 589-777 15-215 (271)
20 3tif_A Uncharacterized ABC tra 100.0 1.6E-35 5.5E-40 307.7 14.7 172 591-777 2-204 (235)
21 1ji0_A ABC transporter; ATP bi 100.0 1.5E-34 5E-39 301.4 15.9 154 590-761 6-180 (240)
22 3fvq_A Fe(3+) IONS import ATP- 100.0 1.7E-34 5.9E-39 315.6 16.2 168 590-777 4-197 (359)
23 3gfo_A Cobalt import ATP-bindi 100.0 2E-34 6.9E-39 305.7 16.1 169 590-777 7-202 (275)
24 2nq2_C Hypothetical ABC transp 100.0 1.3E-34 4.6E-39 303.9 14.4 159 590-767 4-174 (253)
25 3tui_C Methionine import ATP-b 100.0 1.5E-34 5.2E-39 316.2 13.9 173 589-777 23-222 (366)
26 2pcj_A ABC transporter, lipopr 100.0 1.5E-34 5.1E-39 298.2 12.7 158 590-767 4-186 (224)
27 3rlf_A Maltose/maltodextrin im 100.0 1.8E-34 6.2E-39 317.5 13.4 168 590-777 3-192 (381)
28 4g1u_C Hemin import ATP-bindin 100.0 5.2E-34 1.8E-38 301.5 16.2 168 590-777 11-206 (266)
29 1sgw_A Putative ABC transporte 100.0 4.6E-34 1.6E-38 292.2 14.3 152 589-761 9-174 (214)
30 2yz2_A Putative ABC transporte 100.0 1.2E-33 4E-38 298.9 17.8 170 591-777 3-196 (266)
31 1b0u_A Histidine permease; ABC 100.0 7.8E-34 2.7E-38 299.6 16.3 168 590-777 6-211 (262)
32 2olj_A Amino acid ABC transpor 100.0 8.7E-34 3E-38 299.0 16.3 158 590-767 24-205 (263)
33 2yyz_A Sugar ABC transporter, 100.0 7E-34 2.4E-38 311.6 16.1 168 590-777 3-192 (359)
34 1z47_A CYSA, putative ABC-tran 100.0 5.3E-34 1.8E-38 311.8 14.6 169 589-777 13-204 (355)
35 1g6h_A High-affinity branched- 100.0 9.3E-34 3.2E-38 298.3 15.0 153 590-761 7-194 (257)
36 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-33 5.2E-38 296.2 16.2 154 589-761 14-187 (256)
37 1oxx_K GLCV, glucose, ABC tran 100.0 7.3E-34 2.5E-38 311.4 13.8 168 590-777 3-199 (353)
38 2it1_A 362AA long hypothetical 100.0 6.3E-34 2.1E-38 312.3 12.9 168 590-777 3-192 (362)
39 1v43_A Sugar-binding transport 100.0 1.4E-33 4.8E-38 310.6 15.6 168 590-777 11-200 (372)
40 2onk_A Molybdate/tungstate ABC 100.0 8.7E-34 3E-38 295.3 12.9 164 591-777 2-185 (240)
41 3d31_A Sulfate/molybdate ABC t 100.0 8E-34 2.7E-38 310.1 13.2 166 591-777 2-186 (348)
42 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-33 4E-38 300.7 14.1 159 589-767 20-207 (279)
43 2pjz_A Hypothetical protein ST 100.0 1.7E-33 5.9E-38 296.8 12.2 168 591-777 2-183 (263)
44 1g29_1 MALK, maltose transport 100.0 3E-33 1E-37 308.4 14.1 168 590-777 3-198 (372)
45 2qi9_C Vitamin B12 import ATP- 100.0 2.7E-32 9.3E-37 285.5 15.9 148 590-761 4-174 (249)
46 2d2e_A SUFC protein; ABC-ATPas 100.0 1.6E-32 5.5E-37 287.7 13.8 169 590-777 3-201 (250)
47 2zu0_C Probable ATP-dependent 100.0 1.2E-31 4E-36 283.8 14.3 154 589-761 19-205 (267)
48 2v9p_A Replication protein E1; 100.0 3.5E-32 1.2E-36 291.6 -13.3 194 525-760 38-233 (305)
49 3ozx_A RNAse L inhibitor; ATP 99.9 3.4E-27 1.2E-31 272.3 14.0 168 589-777 268-444 (538)
50 3bk7_A ABC transporter ATP-bin 99.9 3.7E-27 1.3E-31 275.4 13.0 158 589-767 356-517 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.9 4.1E-27 1.4E-31 272.1 12.8 158 589-767 286-447 (538)
52 2iw3_A Elongation factor 3A; a 99.9 3.6E-27 1.2E-31 284.8 9.3 172 589-777 670-956 (986)
53 3bk7_A ABC transporter ATP-bin 99.9 7.3E-26 2.5E-30 264.5 11.9 166 590-777 83-286 (607)
54 3j16_B RLI1P; ribosome recycli 99.9 2.2E-25 7.5E-30 260.1 12.6 165 594-777 350-526 (608)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 2.5E-25 8.6E-30 257.2 11.1 155 591-767 21-204 (538)
56 2iw3_A Elongation factor 3A; a 99.9 1.8E-23 6.2E-28 252.6 18.1 151 589-761 434-589 (986)
57 3ozx_A RNAse L inhibitor; ATP 99.9 9.5E-24 3.2E-28 243.6 9.3 145 595-761 4-179 (538)
58 3j16_B RLI1P; ribosome recycli 99.9 1.5E-23 5.3E-28 244.5 9.9 153 595-767 82-267 (608)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.4E-23 8.2E-28 247.4 8.2 147 609-761 31-245 (670)
60 3ux8_A Excinuclease ABC, A sub 99.8 1.2E-21 4.2E-26 232.7 11.6 95 672-777 504-604 (670)
61 2npi_A Protein CLP1; CLP1-PCF1 99.8 7.8E-24 2.7E-28 239.7 -10.0 134 615-764 130-284 (460)
62 3pih_A Uvrabc system protein A 99.8 3.8E-20 1.3E-24 223.5 15.7 79 673-761 767-849 (916)
63 3b85_A Phosphate starvation-in 99.8 8.7E-23 3E-27 207.8 -6.8 103 609-750 13-134 (208)
64 1z6g_A Guanylate kinase; struc 99.8 6.2E-23 2.1E-27 210.4 -9.1 130 610-762 11-169 (218)
65 4aby_A DNA repair protein RECN 99.8 1E-20 3.5E-25 211.8 5.7 149 611-762 50-339 (415)
66 3aez_A Pantothenate kinase; tr 99.8 3E-22 1E-26 216.1 -8.3 138 588-752 41-208 (312)
67 4gp7_A Metallophosphoesterase; 99.8 1.4E-20 4.9E-25 185.3 4.1 119 615-756 1-119 (171)
68 2vf7_A UVRA2, excinuclease ABC 99.8 2.1E-19 7.3E-24 215.3 11.4 49 713-761 723-774 (842)
69 1e69_A Chromosome segregation 99.8 1.9E-19 6.5E-24 195.2 9.5 145 615-761 17-264 (322)
70 1tq4_A IIGP1, interferon-induc 99.8 1.3E-21 4.6E-26 217.9 -7.7 136 609-761 36-207 (413)
71 2r6f_A Excinuclease ABC subuni 99.8 7.4E-19 2.5E-23 211.0 12.5 49 713-761 838-889 (972)
72 2ygr_A Uvrabc system protein A 99.8 6.2E-19 2.1E-23 212.4 11.8 49 713-761 856-907 (993)
73 1ye8_A Protein THEP1, hypothet 99.7 3E-19 1E-23 177.3 3.7 108 625-761 2-124 (178)
74 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.5E-20 5.2E-25 204.5 -12.8 92 611-749 160-251 (330)
75 2f1r_A Molybdopterin-guanine d 99.7 3.3E-20 1.1E-24 182.9 -9.4 98 624-742 3-125 (171)
76 3sop_A Neuronal-specific septi 99.7 2.2E-19 7.4E-24 190.0 -3.9 112 625-755 4-130 (270)
77 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 7.2E-17 2.5E-21 178.0 7.8 46 716-761 275-326 (365)
78 2eyu_A Twitching motility prot 99.6 2.9E-19 1E-23 188.0 -11.9 141 610-756 15-208 (261)
79 2ewv_A Twitching motility prot 99.6 4.7E-19 1.6E-23 195.8 -11.6 138 611-754 127-317 (372)
80 1odf_A YGR205W, hypothetical 3 99.6 1.5E-18 5E-23 185.4 -8.2 129 621-755 29-169 (290)
81 3b9q_A Chloroplast SRP recepto 99.6 7.5E-18 2.6E-22 180.9 -3.3 128 615-760 92-242 (302)
82 1lw7_A Transcriptional regulat 99.6 5.8E-18 2E-22 186.7 -7.0 133 615-748 160-329 (365)
83 2og2_A Putative signal recogni 99.6 3E-17 1E-21 179.8 -2.6 127 615-761 149-300 (359)
84 3asz_A Uridine kinase; cytidin 99.6 9.6E-18 3.3E-22 169.9 -6.4 122 620-762 3-142 (211)
85 2gza_A Type IV secretion syste 99.6 1.1E-18 3.7E-23 192.3 -16.6 201 525-734 63-301 (361)
86 2jeo_A Uridine-cytidine kinase 99.6 1.1E-16 3.8E-21 166.5 -2.9 127 608-754 11-149 (245)
87 1pui_A ENGB, probable GTP-bind 99.5 5.4E-16 1.8E-20 156.1 -2.3 152 591-763 4-193 (210)
88 2dpy_A FLII, flagellum-specifi 99.5 1.8E-16 6E-21 178.5 -7.7 137 589-761 130-289 (438)
89 2o5v_A DNA replication and rep 99.5 2.5E-14 8.4E-19 156.9 8.3 56 720-777 265-329 (359)
90 3c8u_A Fructokinase; YP_612366 99.5 1.2E-16 4E-21 162.1 -10.9 126 620-759 19-162 (208)
91 3qkt_A DNA double-strand break 99.5 1E-13 3.4E-18 151.3 10.4 59 718-777 246-312 (339)
92 2o8b_B DNA mismatch repair pro 99.5 3.8E-14 1.3E-18 174.0 7.7 138 589-769 749-899 (1022)
93 2i3b_A HCR-ntpase, human cance 99.4 5.6E-15 1.9E-19 147.9 -1.2 110 623-758 1-127 (189)
94 1ewq_A DNA mismatch repair pro 99.4 5.2E-14 1.8E-18 168.0 4.9 124 589-761 549-682 (765)
95 1lvg_A Guanylate kinase, GMP k 99.4 8.5E-16 2.9E-20 154.8 -11.8 123 621-762 2-148 (198)
96 1tf7_A KAIC; homohexamer, hexa 99.4 4.1E-13 1.4E-17 154.9 8.3 111 617-754 275-386 (525)
97 2qag_B Septin-6, protein NEDD5 99.4 1.7E-13 5.9E-18 152.6 4.9 163 590-768 16-205 (427)
98 1pzn_A RAD51, DNA repair and r 99.4 1.2E-13 4E-18 151.3 3.1 102 617-754 125-247 (349)
99 2vf7_A UVRA2, excinuclease ABC 99.4 5.2E-13 1.8E-17 160.3 8.6 48 714-761 373-422 (842)
100 2qag_C Septin-7; cell cycle, c 99.4 4.5E-14 1.5E-18 157.7 -1.4 134 589-755 10-157 (418)
101 2qnr_A Septin-2, protein NEDD5 99.4 2.9E-14 9.7E-19 153.1 -3.0 129 595-755 3-145 (301)
102 3thx_A DNA mismatch repair pro 99.3 2.2E-12 7.4E-17 156.8 10.2 132 589-768 630-771 (934)
103 1znw_A Guanylate kinase, GMP k 99.3 1.6E-14 5.5E-19 146.2 -7.4 134 608-761 8-168 (207)
104 3jvv_A Twitching mobility prot 99.3 1.2E-12 4.1E-17 143.4 6.2 119 594-762 92-217 (356)
105 3thx_B DNA mismatch repair pro 99.3 1.3E-12 4.3E-17 158.4 6.1 143 589-769 639-783 (918)
106 1zp6_A Hypothetical protein AT 99.3 3.2E-13 1.1E-17 134.1 0.7 123 619-761 5-142 (191)
107 2obl_A ESCN; ATPase, hydrolase 99.3 1.2E-12 4E-17 143.1 4.8 151 589-761 44-202 (347)
108 1cr0_A DNA primase/helicase; R 99.3 3.9E-12 1.3E-16 135.6 7.7 123 610-751 23-160 (296)
109 4a74_A DNA repair and recombin 99.3 1.5E-12 5.2E-17 132.6 4.2 111 619-754 21-141 (231)
110 1nlf_A Regulatory protein REPA 99.3 6.1E-12 2.1E-16 133.1 8.4 119 619-756 26-153 (279)
111 1rj9_A FTSY, signal recognitio 99.2 2.6E-12 8.9E-17 137.9 4.6 113 622-752 101-235 (304)
112 1w1w_A Structural maintenance 99.2 3.2E-11 1.1E-15 135.6 12.5 42 720-761 333-378 (430)
113 2rcn_A Probable GTPase ENGC; Y 99.2 2.8E-12 9.5E-17 140.1 1.8 111 612-735 206-328 (358)
114 3szr_A Interferon-induced GTP- 99.2 2.4E-13 8.3E-18 159.3 -8.2 133 590-761 10-175 (608)
115 1tf7_A KAIC; homohexamer, hexa 99.1 8.2E-13 2.8E-17 152.4 -5.4 59 609-669 25-98 (525)
116 2w0m_A SSO2452; RECA, SSPF, un 99.1 3.7E-11 1.3E-15 122.1 5.8 125 610-761 10-148 (235)
117 1p9r_A General secretion pathw 99.1 6E-13 2E-17 148.7 -8.2 108 621-744 165-315 (418)
118 1htw_A HI0065; nucleotide-bind 99.1 2.5E-12 8.4E-17 124.9 -4.4 71 609-682 20-99 (158)
119 3kta_B Chromosome segregation 99.1 4.9E-11 1.7E-15 117.4 4.8 45 717-761 61-109 (173)
120 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 8.6E-11 2.9E-15 112.7 6.2 49 717-766 54-108 (148)
121 2qm8_A GTPase/ATPase; G protei 99.1 1.7E-12 5.6E-17 141.5 -6.7 157 591-762 30-254 (337)
122 1wb9_A DNA mismatch repair pro 99.1 8.8E-11 3E-15 141.0 6.2 116 609-767 595-715 (800)
123 2bbw_A Adenylate kinase 4, AK4 99.0 3.8E-12 1.3E-16 132.1 -5.6 132 622-761 26-191 (246)
124 1s96_A Guanylate kinase, GMP k 99.0 5.7E-11 2E-15 121.5 0.7 101 617-762 10-126 (219)
125 2cvh_A DNA repair and recombin 99.0 1.5E-09 5.1E-14 109.5 10.6 102 619-755 16-122 (220)
126 1nij_A Hypothetical protein YJ 99.0 6.2E-12 2.1E-16 135.9 -7.8 118 624-747 5-166 (318)
127 2yv5_A YJEQ protein; hydrolase 99.0 1.3E-10 4.4E-15 124.7 2.1 102 618-733 160-300 (302)
128 2yhs_A FTSY, cell division pro 98.9 1.2E-09 4.2E-14 123.2 8.0 129 615-762 285-436 (503)
129 2ehv_A Hypothetical protein PH 98.9 5E-11 1.7E-15 122.9 -3.4 40 619-659 26-67 (251)
130 3pih_A Uvrabc system protein A 98.9 1.7E-10 5.8E-15 139.7 0.3 114 640-761 385-507 (916)
131 2oap_1 GSPE-2, type II secreti 98.9 1E-10 3.5E-15 134.0 -3.6 119 610-732 248-412 (511)
132 1udx_A The GTP-binding protein 98.8 6.6E-10 2.2E-14 124.0 2.1 129 615-756 149-284 (416)
133 2x8a_A Nuclear valosin-contain 98.8 1.9E-11 6.5E-16 129.3 -11.2 131 610-764 34-191 (274)
134 2ygr_A Uvrabc system protein A 98.8 5.1E-09 1.8E-13 126.6 8.2 87 670-761 466-564 (993)
135 2r6f_A Excinuclease ABC subuni 98.8 2.8E-09 9.7E-14 128.4 5.5 87 670-761 449-547 (972)
136 1sq5_A Pantothenate kinase; P- 98.7 1.3E-10 4.6E-15 124.8 -7.1 59 589-657 36-115 (308)
137 1n0w_A DNA repair protein RAD5 98.7 1E-08 3.5E-13 105.0 7.1 109 619-754 20-135 (243)
138 1cke_A CK, MSSA, protein (cyti 98.7 2.9E-10 9.9E-15 115.7 -4.9 115 622-748 4-150 (227)
139 1vma_A Cell division protein F 98.7 8.7E-09 3E-13 110.5 5.5 107 616-761 97-206 (306)
140 3e70_C DPA, signal recognition 98.7 1.2E-08 4E-13 110.5 5.9 63 619-682 125-207 (328)
141 1u0l_A Probable GTPase ENGC; p 98.7 5.8E-09 2E-13 111.7 3.5 88 618-707 164-289 (301)
142 1t9h_A YLOQ, probable GTPase E 98.7 2.8E-09 9.7E-14 114.1 0.8 82 618-701 168-287 (307)
143 3ec2_A DNA replication protein 98.7 2.4E-08 8.2E-13 98.0 6.9 36 617-652 32-67 (180)
144 2kjq_A DNAA-related protein; s 98.7 5E-08 1.7E-12 93.4 8.8 40 622-668 35-74 (149)
145 4ad8_A DNA repair protein RECN 98.7 9.1E-09 3.1E-13 118.4 4.1 44 719-762 395-441 (517)
146 3auy_A DNA double-strand break 98.5 1E-07 3.4E-12 105.0 7.2 44 719-762 279-329 (371)
147 1iy2_A ATP-dependent metallopr 98.5 5E-10 1.7E-14 118.2 -11.1 127 610-764 63-223 (278)
148 3lda_A DNA repair protein RAD5 98.5 6.8E-08 2.3E-12 107.3 5.4 111 619-756 174-291 (400)
149 3a00_A Guanylate kinase, GMP k 98.5 3.4E-08 1.2E-12 97.7 2.7 117 623-746 1-169 (186)
150 1sxj_E Activator 1 40 kDa subu 98.5 1.1E-07 3.7E-12 103.3 6.4 106 625-761 38-156 (354)
151 1ls1_A Signal recognition part 98.5 3E-07 1E-11 98.1 9.5 110 615-759 92-202 (295)
152 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-07 4.6E-12 94.2 5.7 125 617-746 1-171 (205)
153 1ixz_A ATP-dependent metallopr 98.4 6.4E-10 2.2E-14 115.6 -12.1 127 610-764 39-199 (254)
154 3kta_A Chromosome segregation 98.4 7.4E-08 2.5E-12 94.5 2.6 109 615-729 19-162 (182)
155 1oix_A RAS-related protein RAB 98.4 6E-08 2.1E-12 96.1 1.0 132 625-765 31-188 (191)
156 3euj_A Chromosome partition pr 98.4 9.1E-08 3.1E-12 108.3 2.5 47 610-659 18-64 (483)
157 1in4_A RUVB, holliday junction 98.3 2.7E-09 9.1E-14 115.9 -10.3 68 610-680 32-123 (334)
158 2px0_A Flagellar biosynthesis 98.3 5.7E-07 1.9E-11 95.9 7.3 96 621-756 103-198 (296)
159 2qt1_A Nicotinamide riboside k 98.3 1.5E-07 5.1E-12 94.4 2.1 52 618-683 16-67 (207)
160 3lnc_A Guanylate kinase, GMP k 98.3 1.2E-07 4.1E-12 97.0 1.2 36 611-647 16-52 (231)
161 1svm_A Large T antigen; AAA+ f 98.3 3.5E-09 1.2E-13 116.7 -12.0 128 610-749 157-312 (377)
162 4e22_A Cytidylate kinase; P-lo 98.2 6.6E-08 2.3E-12 100.6 -2.1 89 621-716 25-144 (252)
163 3ney_A 55 kDa erythrocyte memb 98.2 1E-07 3.5E-12 95.5 -1.0 74 617-696 13-109 (197)
164 1kgd_A CASK, peripheral plasma 98.2 2.1E-07 7.3E-12 91.5 -0.4 71 622-696 4-95 (180)
165 2f9l_A RAB11B, member RAS onco 98.2 2.3E-06 7.7E-11 84.9 6.8 39 729-769 130-168 (199)
166 3k1j_A LON protease, ATP-depen 98.1 2.5E-07 8.6E-12 108.4 -0.6 144 609-760 47-222 (604)
167 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 3.2E-07 1.1E-11 101.4 -1.6 116 619-761 16-164 (392)
168 2qtf_A Protein HFLX, GTP-bindi 98.0 2.3E-06 8E-11 93.8 4.3 132 625-763 181-348 (364)
169 4a1f_A DNAB helicase, replicat 98.0 5E-06 1.7E-10 90.1 6.2 98 619-752 42-141 (338)
170 3tqc_A Pantothenate kinase; bi 98.0 1.9E-07 6.4E-12 100.6 -5.2 124 611-753 75-211 (321)
171 3nwj_A ATSK2; P loop, shikimat 98.0 6.2E-07 2.1E-11 93.3 -1.6 52 590-647 17-72 (250)
172 3uie_A Adenylyl-sulfate kinase 98.0 2.2E-06 7.4E-11 85.6 2.3 43 615-659 17-61 (200)
173 3vaa_A Shikimate kinase, SK; s 98.0 2.6E-06 8.8E-11 85.0 2.8 41 606-647 9-49 (199)
174 2dhr_A FTSH; AAA+ protein, hex 97.8 4.2E-07 1.4E-11 103.6 -5.8 125 610-762 54-212 (499)
175 2j41_A Guanylate kinase; GMP, 97.8 6.6E-06 2.2E-10 81.8 3.1 35 618-652 1-35 (207)
176 3t34_A Dynamin-related protein 97.8 8E-06 2.7E-10 89.3 4.1 44 610-658 25-70 (360)
177 2bdt_A BH3686; alpha-beta prot 97.8 2.6E-06 9E-11 83.9 -0.7 54 623-680 2-63 (189)
178 2zr9_A Protein RECA, recombina 97.7 6.2E-05 2.1E-09 82.0 9.0 94 619-751 57-152 (349)
179 1qhl_A Protein (cell division 97.7 1.1E-06 3.9E-11 89.9 -4.6 41 617-659 22-62 (227)
180 2dy1_A Elongation factor G; tr 97.7 8.6E-06 2.9E-10 96.3 1.9 81 617-699 3-100 (665)
181 3bh0_A DNAB-like replicative h 97.6 3.5E-05 1.2E-09 82.7 5.3 108 612-752 58-165 (315)
182 2r6a_A DNAB helicase, replicat 97.6 0.00013 4.5E-09 82.2 10.3 123 611-753 192-328 (454)
183 2xau_A PRE-mRNA-splicing facto 97.6 1.6E-05 5.3E-10 95.7 1.9 124 619-762 105-233 (773)
184 4eun_A Thermoresistant glucoki 97.6 2.8E-05 9.7E-10 77.4 3.2 58 618-680 24-94 (200)
185 2dr3_A UPF0273 protein PH0284; 97.6 0.00018 6.1E-09 73.2 9.3 34 617-650 17-50 (247)
186 2ce7_A Cell division protein F 97.5 7.4E-05 2.5E-09 84.6 6.1 80 611-749 40-119 (476)
187 2e87_A Hypothetical protein PH 97.5 0.00015 5.1E-09 79.1 8.1 106 623-763 167-274 (357)
188 3cr8_A Sulfate adenylyltranfer 97.5 0.00012 4.1E-09 84.4 7.3 42 618-659 364-406 (552)
189 3tau_A Guanylate kinase, GMP k 97.4 5.9E-05 2E-09 75.7 3.7 29 621-649 6-34 (208)
190 1zu4_A FTSY; GTPase, signal re 97.4 0.00017 5.9E-09 77.5 7.2 42 615-657 97-138 (320)
191 1rz3_A Hypothetical protein rb 97.4 4.3E-05 1.5E-09 76.3 2.2 38 619-657 18-55 (201)
192 2ius_A DNA translocase FTSK; n 97.4 2.3E-05 7.8E-10 89.3 -0.2 42 615-657 159-202 (512)
193 2vp4_A Deoxynucleoside kinase; 97.4 8.8E-05 3E-09 75.6 3.8 37 618-659 15-51 (230)
194 3ice_A Transcription terminati 97.3 5.2E-05 1.8E-09 82.8 1.6 56 589-649 132-200 (422)
195 1knq_A Gluconate kinase; ALFA/ 97.2 0.00014 4.7E-09 70.4 3.0 34 621-659 6-39 (175)
196 3hr8_A Protein RECA; alpha and 97.1 0.00021 7.2E-09 77.8 3.0 33 620-652 58-90 (356)
197 2q6t_A DNAB replication FORK h 97.0 0.00091 3.1E-08 75.1 7.8 34 619-652 196-229 (444)
198 3b9p_A CG5977-PA, isoform A; A 97.0 0.0013 4.4E-08 69.1 8.1 76 622-753 53-128 (297)
199 1kag_A SKI, shikimate kinase I 97.0 0.00029 1E-08 67.8 2.7 27 622-648 3-29 (173)
200 2z43_A DNA repair and recombin 97.0 0.0025 8.6E-08 68.4 10.4 108 619-753 103-218 (324)
201 3m6a_A ATP-dependent protease 96.9 0.00017 5.8E-09 83.2 0.8 46 611-659 98-143 (543)
202 2ffh_A Protein (FFH); SRP54, s 96.9 0.00035 1.2E-08 77.9 3.3 129 615-761 92-234 (425)
203 3kl4_A SRP54, signal recogniti 96.9 0.0012 4.2E-08 73.6 7.7 34 622-656 96-129 (433)
204 3lxx_A GTPase IMAP family memb 96.9 0.0033 1.1E-07 63.9 10.3 28 625-652 31-58 (239)
205 1v5w_A DMC1, meiotic recombina 96.8 0.0067 2.3E-07 65.6 12.7 108 619-753 118-234 (343)
206 2p67_A LAO/AO transport system 96.8 0.00028 9.4E-09 76.5 0.8 46 610-657 44-89 (341)
207 2www_A Methylmalonic aciduria 96.8 0.00053 1.8E-08 74.6 3.1 36 621-657 72-107 (349)
208 4eaq_A DTMP kinase, thymidylat 96.7 0.00087 3E-08 68.4 3.8 41 612-655 13-56 (229)
209 2pez_A Bifunctional 3'-phospho 96.6 0.0006 2E-08 66.2 2.2 31 621-652 3-33 (179)
210 1fnn_A CDC6P, cell division co 96.6 0.0057 2E-07 66.3 10.2 30 622-651 41-72 (389)
211 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0011 3.6E-08 63.1 3.4 29 615-644 16-44 (149)
212 2qor_A Guanylate kinase; phosp 96.6 0.0008 2.8E-08 66.9 2.6 30 619-648 8-37 (204)
213 1y63_A LMAJ004144AAA protein; 96.5 0.0011 3.7E-08 64.9 3.2 32 615-646 2-33 (184)
214 2gj8_A MNME, tRNA modification 96.5 0.0012 4E-08 63.7 3.2 27 621-647 2-28 (172)
215 1f6b_A SAR1; gtpases, N-termin 96.5 0.00066 2.3E-08 67.0 1.3 35 609-645 13-47 (198)
216 3bgw_A DNAB-like replicative h 96.4 0.0025 8.4E-08 71.6 5.4 30 619-648 193-222 (444)
217 2yvu_A Probable adenylyl-sulfa 96.4 0.0014 4.7E-08 64.1 2.7 37 618-655 8-44 (186)
218 1m7g_A Adenylylsulfate kinase; 96.3 0.00082 2.8E-08 67.3 0.8 35 618-652 20-54 (211)
219 1m2o_B GTP-binding protein SAR 96.3 0.0021 7E-08 62.9 3.5 33 611-645 13-45 (190)
220 1ly1_A Polynucleotide kinase; 96.2 0.011 3.7E-07 56.7 8.3 22 624-645 3-24 (181)
221 3llm_A ATP-dependent RNA helic 96.1 0.0048 1.6E-07 62.8 5.2 116 620-756 73-195 (235)
222 1mky_A Probable GTP-binding pr 96.1 0.0038 1.3E-07 69.9 4.7 36 624-660 181-228 (439)
223 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0025 8.5E-08 70.2 3.1 40 619-659 18-68 (396)
224 1l8q_A Chromosomal replication 96.0 0.0068 2.3E-07 64.6 6.1 29 622-650 36-64 (324)
225 1ega_A Protein (GTP-binding pr 96.0 0.0023 8E-08 67.9 2.5 26 622-647 7-32 (301)
226 2z4s_A Chromosomal replication 96.0 0.0067 2.3E-07 67.9 6.1 27 623-649 130-156 (440)
227 2zej_A Dardarin, leucine-rich 95.9 0.0036 1.2E-07 60.7 3.3 24 625-648 4-27 (184)
228 3bos_A Putative DNA replicatio 95.9 0.01 3.5E-07 59.4 6.9 29 622-650 51-79 (242)
229 1np6_A Molybdopterin-guanine d 95.9 0.0031 1.1E-07 61.5 2.8 28 623-650 6-33 (174)
230 1qhx_A CPT, protein (chloramph 95.9 0.0038 1.3E-07 60.1 3.2 27 622-648 2-28 (178)
231 2wji_A Ferrous iron transport 95.8 0.0057 1.9E-07 58.1 3.9 24 624-647 4-27 (165)
232 2wjg_A FEOB, ferrous iron tran 95.8 0.0067 2.3E-07 58.5 4.5 23 624-646 8-30 (188)
233 1j8m_F SRP54, signal recogniti 95.8 0.0031 1.1E-07 66.9 2.2 39 616-656 92-130 (297)
234 3qf4_A ABC transporter, ATP-bi 95.8 4 0.00014 47.0 31.2 85 274-361 26-110 (587)
235 3qks_A DNA double-strand break 95.7 0.005 1.7E-07 61.5 3.4 29 615-644 16-44 (203)
236 2qby_A CDC6 homolog 1, cell di 95.7 0.0067 2.3E-07 65.4 4.7 32 621-652 43-74 (386)
237 3t61_A Gluconokinase; PSI-biol 95.7 0.0034 1.1E-07 62.1 2.1 25 623-647 18-42 (202)
238 4fcw_A Chaperone protein CLPB; 95.7 0.011 3.8E-07 62.2 6.2 30 623-652 47-76 (311)
239 1gvn_B Zeta; postsegregational 95.7 0.0063 2.2E-07 64.2 4.2 36 621-659 31-66 (287)
240 2p5t_B PEZT; postsegregational 95.7 0.0043 1.5E-07 64.0 2.8 38 619-659 28-65 (253)
241 4dcu_A GTP-binding protein ENG 95.7 0.011 3.9E-07 66.3 6.5 22 625-646 25-46 (456)
242 3cm0_A Adenylate kinase; ATP-b 95.6 0.005 1.7E-07 59.7 3.0 27 621-647 2-28 (186)
243 1ex7_A Guanylate kinase; subst 95.6 0.0045 1.5E-07 61.1 2.6 23 626-648 4-26 (186)
244 1jjv_A Dephospho-COA kinase; P 95.6 0.0058 2E-07 60.5 3.2 21 625-645 4-24 (206)
245 2if2_A Dephospho-COA kinase; a 95.6 0.005 1.7E-07 60.8 2.7 21 625-645 3-23 (204)
246 3kb2_A SPBC2 prophage-derived 95.5 0.0051 1.7E-07 58.6 2.4 23 625-647 3-25 (173)
247 2qag_A Septin-2, protein NEDD5 95.5 0.0021 7.3E-08 70.1 -0.5 51 589-652 16-66 (361)
248 1kht_A Adenylate kinase; phosp 95.4 0.0082 2.8E-07 58.2 3.4 27 622-648 2-28 (192)
249 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.014 4.9E-07 62.3 5.5 28 619-646 119-146 (331)
250 1lv7_A FTSH; alpha/beta domain 95.3 0.0051 1.7E-07 63.2 2.0 32 615-648 39-70 (257)
251 2v54_A DTMP kinase, thymidylat 95.3 0.0085 2.9E-07 58.9 3.4 27 621-647 2-28 (204)
252 2rhm_A Putative kinase; P-loop 95.3 0.008 2.7E-07 58.5 3.1 27 621-647 3-29 (193)
253 4ad8_A DNA repair protein RECN 95.2 0.0036 1.2E-07 71.6 0.4 32 611-644 50-81 (517)
254 2dby_A GTP-binding protein; GD 95.2 0.0049 1.7E-07 67.4 1.4 58 625-700 3-60 (368)
255 1u94_A RECA protein, recombina 95.2 0.037 1.3E-06 60.1 8.2 41 620-667 60-100 (356)
256 3lw7_A Adenylate kinase relate 95.1 0.0099 3.4E-07 56.3 3.2 20 624-643 2-21 (179)
257 3r20_A Cytidylate kinase; stru 95.1 0.008 2.7E-07 61.4 2.4 26 622-647 8-33 (233)
258 4ag6_A VIRB4 ATPase, type IV s 95.0 0.012 4.1E-07 64.6 3.9 35 622-657 34-68 (392)
259 3trf_A Shikimate kinase, SK; a 95.0 0.0088 3E-07 57.9 2.5 26 622-647 4-29 (185)
260 2plr_A DTMP kinase, probable t 95.0 0.0095 3.2E-07 58.7 2.8 28 622-649 3-30 (213)
261 1gtv_A TMK, thymidylate kinase 95.0 0.0031 1.1E-07 62.6 -0.8 88 625-719 2-97 (214)
262 1q3t_A Cytidylate kinase; nucl 95.0 0.0092 3.2E-07 60.6 2.7 27 621-647 14-40 (236)
263 3qf4_B Uncharacterized ABC tra 95.0 3.5 0.00012 47.6 24.9 207 274-492 40-258 (598)
264 2erx_A GTP-binding protein DI- 95.0 0.016 5.3E-07 54.5 4.1 22 625-646 5-26 (172)
265 3iij_A Coilin-interacting nucl 95.0 0.0079 2.7E-07 58.1 2.0 27 621-647 9-35 (180)
266 2wwf_A Thymidilate kinase, put 95.0 0.012 4E-07 58.3 3.2 28 621-648 8-35 (212)
267 1uf9_A TT1252 protein; P-loop, 94.9 0.012 4.1E-07 57.7 3.1 24 623-646 8-31 (203)
268 2jaq_A Deoxyguanosine kinase; 94.9 0.01 3.6E-07 58.0 2.6 22 625-646 2-23 (205)
269 3dm5_A SRP54, signal recogniti 94.9 0.048 1.7E-06 60.8 8.1 30 622-652 99-128 (443)
270 2ze6_A Isopentenyl transferase 94.9 0.01 3.5E-07 61.3 2.5 24 624-647 2-25 (253)
271 1z2a_A RAS-related protein RAB 94.8 0.015 5.2E-07 54.4 3.5 23 625-647 7-29 (168)
272 3q72_A GTP-binding protein RAD 94.8 0.013 4.4E-07 55.0 3.0 24 625-648 4-27 (166)
273 1nn5_A Similar to deoxythymidy 94.8 0.013 4.5E-07 57.9 3.1 29 620-648 6-34 (215)
274 1vht_A Dephospho-COA kinase; s 94.8 0.014 4.7E-07 58.3 3.3 24 622-645 3-26 (218)
275 1xjc_A MOBB protein homolog; s 94.8 0.012 4.2E-07 57.1 2.7 26 624-649 5-30 (169)
276 1kao_A RAP2A; GTP-binding prot 94.7 0.014 4.7E-07 54.5 2.9 22 625-646 5-26 (167)
277 1jal_A YCHF protein; nucleotid 94.7 0.02 7E-07 62.3 4.6 36 623-659 2-48 (363)
278 1ypw_A Transitional endoplasmi 94.7 0.011 3.9E-07 71.2 2.8 33 617-649 232-264 (806)
279 2ga8_A Hypothetical 39.9 kDa p 94.7 0.0045 1.5E-07 67.1 -0.7 38 610-648 10-49 (359)
280 3lxw_A GTPase IMAP family memb 94.7 0.015 5.1E-07 59.7 3.3 25 624-648 22-46 (247)
281 2c95_A Adenylate kinase 1; tra 94.7 0.015 5E-07 56.7 3.0 27 621-647 7-33 (196)
282 2nzj_A GTP-binding protein REM 94.7 0.016 5.6E-07 54.7 3.3 23 625-647 6-28 (175)
283 2ce2_X GTPase HRAS; signaling 94.7 0.014 4.7E-07 54.3 2.7 23 625-647 5-27 (166)
284 1z0j_A RAB-22, RAS-related pro 94.6 0.015 5.2E-07 54.5 3.0 23 625-647 8-30 (170)
285 1u8z_A RAS-related protein RAL 94.6 0.015 5.2E-07 54.3 3.0 22 625-646 6-27 (168)
286 2vli_A Antibiotic resistance p 94.6 0.012 4.1E-07 56.7 2.3 27 621-647 3-29 (183)
287 2dyk_A GTP-binding protein; GT 94.6 0.016 5.3E-07 54.0 3.0 23 625-647 3-25 (161)
288 2lkc_A Translation initiation 94.6 0.019 6.4E-07 54.6 3.6 25 622-646 7-31 (178)
289 3tw8_B RAS-related protein RAB 94.6 0.017 5.6E-07 54.9 3.2 23 625-647 11-33 (181)
290 2ged_A SR-beta, signal recogni 94.6 0.015 5.3E-07 56.2 3.0 25 623-647 48-72 (193)
291 1ek0_A Protein (GTP-binding pr 94.6 0.015 5.2E-07 54.5 2.9 23 625-647 5-27 (170)
292 2eyu_A Twitching motility prot 94.6 0.026 8.7E-07 58.7 4.8 32 728-762 88-119 (261)
293 1g16_A RAS-related protein SEC 94.6 0.014 4.8E-07 54.8 2.6 23 625-647 5-27 (170)
294 1z08_A RAS-related protein RAB 94.6 0.016 5.6E-07 54.4 3.1 22 625-646 8-29 (170)
295 3q85_A GTP-binding protein REM 94.5 0.018 6E-07 54.2 3.2 23 625-647 4-26 (169)
296 1c1y_A RAS-related protein RAP 94.5 0.016 5.5E-07 54.2 2.9 22 625-646 5-26 (167)
297 1svi_A GTP-binding protein YSX 94.5 0.016 5.4E-07 56.2 2.8 25 623-647 23-47 (195)
298 1ky3_A GTP-binding protein YPT 94.5 0.017 5.8E-07 54.9 3.0 23 625-647 10-32 (182)
299 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.017 5.8E-07 54.8 2.9 22 625-646 9-30 (177)
300 2fn4_A P23, RAS-related protei 94.4 0.016 5.6E-07 55.0 2.7 22 625-646 11-32 (181)
301 1sxj_C Activator 1 40 kDa subu 94.4 0.0045 1.5E-07 66.6 -1.5 41 610-651 32-74 (340)
302 3pqc_A Probable GTP-binding pr 94.4 0.017 5.9E-07 55.6 2.8 24 624-647 24-47 (195)
303 3t5d_A Septin-7; GTP-binding p 94.4 0.017 5.9E-07 60.1 3.0 23 625-647 10-32 (274)
304 3clv_A RAB5 protein, putative; 94.4 0.018 6E-07 55.7 2.9 23 624-646 8-30 (208)
305 1tev_A UMP-CMP kinase; ploop, 94.4 0.02 6.9E-07 55.4 3.3 26 622-647 2-27 (196)
306 2bwj_A Adenylate kinase 5; pho 94.3 0.016 5.4E-07 56.6 2.4 28 620-647 9-36 (199)
307 1r2q_A RAS-related protein RAB 94.3 0.019 6.6E-07 53.8 2.9 22 625-646 8-29 (170)
308 4a82_A Cystic fibrosis transme 94.3 6.3 0.00021 45.3 24.6 168 319-495 66-245 (578)
309 4dsu_A GTPase KRAS, isoform 2B 94.2 0.021 7E-07 54.8 2.9 23 625-647 6-28 (189)
310 3k53_A Ferrous iron transport 94.2 0.02 7E-07 59.4 2.9 24 625-648 5-28 (271)
311 1aky_A Adenylate kinase; ATP:A 94.2 0.025 8.4E-07 56.6 3.5 27 621-647 2-28 (220)
312 2cxx_A Probable GTP-binding pr 94.2 0.025 8.6E-07 54.3 3.4 23 625-647 3-25 (190)
313 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.082 2.8E-06 56.4 7.7 27 621-647 43-69 (322)
314 1zd8_A GTP:AMP phosphotransfer 94.1 0.02 6.9E-07 57.6 2.7 27 621-647 5-31 (227)
315 1via_A Shikimate kinase; struc 94.1 0.018 6.2E-07 55.3 2.3 23 625-647 6-28 (175)
316 2y8e_A RAB-protein 6, GH09086P 94.1 0.02 6.9E-07 54.2 2.6 22 625-646 16-37 (179)
317 3bc1_A RAS-related protein RAB 94.1 0.022 7.4E-07 54.7 2.9 22 625-646 13-34 (195)
318 2hxs_A RAB-26, RAS-related pro 94.1 0.025 8.6E-07 53.7 3.2 22 625-646 8-29 (178)
319 3cf0_A Transitional endoplasmi 94.1 0.018 6E-07 60.9 2.3 31 618-648 44-74 (301)
320 2oil_A CATX-8, RAS-related pro 94.1 0.023 7.9E-07 55.0 3.0 22 625-646 27-48 (193)
321 1nks_A Adenylate kinase; therm 94.1 0.023 8E-07 54.9 3.0 24 625-648 3-26 (194)
322 1r8s_A ADP-ribosylation factor 94.1 0.023 7.9E-07 53.1 2.9 21 625-645 2-22 (164)
323 1ukz_A Uridylate kinase; trans 94.0 0.023 7.9E-07 55.8 2.9 26 622-647 14-39 (203)
324 3a8t_A Adenylate isopentenyltr 94.0 0.028 9.7E-07 60.4 3.8 28 621-648 38-65 (339)
325 1ltq_A Polynucleotide kinase; 94.0 0.11 3.7E-06 54.4 8.2 23 624-646 3-25 (301)
326 1z0f_A RAB14, member RAS oncog 94.0 0.024 8.1E-07 53.7 2.9 23 625-647 17-39 (179)
327 1fzq_A ADP-ribosylation factor 94.0 0.025 8.4E-07 54.6 3.0 30 623-652 16-49 (181)
328 2cdn_A Adenylate kinase; phosp 94.0 0.029 9.8E-07 55.2 3.5 27 621-647 18-44 (201)
329 2g6b_A RAS-related protein RAB 94.0 0.024 8.3E-07 53.9 2.9 23 625-647 12-34 (180)
330 2efe_B Small GTP-binding prote 94.0 0.025 8.6E-07 53.8 3.0 23 625-647 14-36 (181)
331 1upt_A ARL1, ADP-ribosylation 94.0 0.027 9.3E-07 52.9 3.1 24 622-645 6-29 (171)
332 3t1o_A Gliding protein MGLA; G 94.0 0.026 9E-07 54.4 3.1 25 625-649 16-40 (198)
333 1jwy_B Dynamin A GTPase domain 93.9 0.024 8.3E-07 59.8 3.0 23 625-647 26-48 (315)
334 2a9k_A RAS-related protein RAL 93.9 0.025 8.7E-07 53.9 2.9 23 624-646 19-41 (187)
335 3con_A GTPase NRAS; structural 93.9 0.025 8.6E-07 54.5 2.9 23 625-647 23-45 (190)
336 1wf3_A GTP-binding protein; GT 93.9 0.027 9.4E-07 59.7 3.3 23 625-647 9-31 (301)
337 4bas_A ADP-ribosylation factor 93.9 0.037 1.3E-06 53.5 4.0 24 623-646 17-40 (199)
338 3d8b_A Fidgetin-like protein 1 93.8 0.063 2.1E-06 58.2 6.1 27 621-647 115-141 (357)
339 2bme_A RAB4A, RAS-related prot 93.8 0.025 8.5E-07 54.2 2.6 23 625-647 12-34 (186)
340 2xtp_A GTPase IMAP family memb 93.8 0.028 9.6E-07 57.7 3.1 24 624-647 23-46 (260)
341 3iev_A GTP-binding protein ERA 93.8 0.029 9.8E-07 59.6 3.3 23 625-647 12-34 (308)
342 1moz_A ARL1, ADP-ribosylation 93.8 0.025 8.5E-07 54.0 2.5 24 622-645 17-40 (183)
343 1vg8_A RAS-related protein RAB 93.7 0.03 1E-06 54.7 3.0 23 625-647 10-32 (207)
344 2bov_A RAla, RAS-related prote 93.7 0.028 9.7E-07 54.8 2.9 22 625-646 16-37 (206)
345 3fb4_A Adenylate kinase; psych 93.7 0.024 8.3E-07 56.3 2.4 23 625-647 2-24 (216)
346 2aka_B Dynamin-1; fusion prote 93.7 0.027 9.4E-07 58.8 2.9 23 625-647 28-50 (299)
347 3kkq_A RAS-related protein M-R 93.7 0.029 1E-06 53.6 2.9 22 625-646 20-41 (183)
348 1a7j_A Phosphoribulokinase; tr 93.7 0.021 7.2E-07 60.2 2.0 42 622-670 4-45 (290)
349 3t5g_A GTP-binding protein RHE 93.7 0.04 1.4E-06 52.6 3.8 20 625-644 8-27 (181)
350 2gf9_A RAS-related protein RAB 93.7 0.03 1E-06 54.1 2.9 23 625-647 24-46 (189)
351 3auy_A DNA double-strand break 93.7 0.029 9.8E-07 61.2 3.0 29 615-644 18-46 (371)
352 2z0h_A DTMP kinase, thymidylat 93.6 0.032 1.1E-06 54.2 3.1 24 625-648 2-25 (197)
353 2fg5_A RAB-22B, RAS-related pr 93.6 0.029 9.9E-07 54.5 2.7 22 625-646 25-46 (192)
354 3dl0_A Adenylate kinase; phosp 93.6 0.029 1E-06 55.7 2.8 23 625-647 2-24 (216)
355 1z06_A RAS-related protein RAB 93.6 0.031 1.1E-06 53.9 2.9 22 625-646 22-43 (189)
356 3cbq_A GTP-binding protein REM 93.6 0.031 1.1E-06 54.7 2.9 22 625-646 25-46 (195)
357 2il1_A RAB12; G-protein, GDP, 93.6 0.034 1.2E-06 54.1 3.1 23 625-647 28-50 (192)
358 3tkl_A RAS-related protein RAB 93.6 0.038 1.3E-06 53.3 3.5 23 625-647 18-40 (196)
359 3uk6_A RUVB-like 2; hexameric 93.6 0.12 4E-06 55.6 7.7 28 622-649 69-96 (368)
360 3def_A T7I23.11 protein; chlor 93.6 0.032 1.1E-06 57.6 3.1 23 625-647 38-60 (262)
361 1zbd_A Rabphilin-3A; G protein 93.6 0.035 1.2E-06 54.2 3.2 23 625-647 10-32 (203)
362 2gf0_A GTP-binding protein DI- 93.6 0.03 1E-06 54.2 2.7 23 624-646 9-31 (199)
363 2qu8_A Putative nucleolar GTP- 93.6 0.035 1.2E-06 55.6 3.3 25 623-647 29-53 (228)
364 3tlx_A Adenylate kinase 2; str 93.5 0.029 9.9E-07 57.4 2.6 27 621-647 27-53 (243)
365 4dhe_A Probable GTP-binding pr 93.5 0.018 6.1E-07 57.2 1.0 25 623-647 29-53 (223)
366 1ksh_A ARF-like protein 2; sma 93.5 0.039 1.3E-06 52.9 3.5 27 621-647 16-42 (186)
367 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.036 1.2E-06 57.2 3.4 28 621-648 2-29 (260)
368 2qmh_A HPR kinase/phosphorylas 93.5 0.039 1.3E-06 54.9 3.4 27 620-646 31-57 (205)
369 1zak_A Adenylate kinase; ATP:A 93.5 0.024 8.1E-07 56.8 1.9 26 622-647 4-29 (222)
370 3iby_A Ferrous iron transport 93.5 0.032 1.1E-06 57.6 2.9 23 625-647 3-25 (256)
371 1qf9_A UMP/CMP kinase, protein 93.5 0.033 1.1E-06 53.8 2.9 25 623-647 6-30 (194)
372 2h57_A ADP-ribosylation factor 93.5 0.032 1.1E-06 53.9 2.8 25 623-647 21-45 (190)
373 1nrj_B SR-beta, signal recogni 93.5 0.034 1.2E-06 55.0 3.0 24 624-647 13-36 (218)
374 3ihw_A Centg3; RAS, centaurin, 93.5 0.035 1.2E-06 53.7 3.0 22 625-646 22-43 (184)
375 1mh1_A RAC1; GTP-binding, GTPa 93.4 0.034 1.2E-06 53.0 2.9 22 625-646 7-28 (186)
376 3b1v_A Ferrous iron uptake tra 93.4 0.044 1.5E-06 57.2 3.9 24 624-647 4-27 (272)
377 3ake_A Cytidylate kinase; CMP 93.4 0.029 9.9E-07 55.1 2.3 23 625-647 4-26 (208)
378 3oes_A GTPase rhebl1; small GT 93.4 0.033 1.1E-06 54.5 2.6 27 621-647 22-48 (201)
379 2pbr_A DTMP kinase, thymidylat 93.4 0.039 1.3E-06 53.4 3.1 24 625-648 2-25 (195)
380 2pt5_A Shikimate kinase, SK; a 93.3 0.041 1.4E-06 52.1 3.2 23 625-647 2-24 (168)
381 3exa_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 58.5 3.5 27 622-648 2-28 (322)
382 1h65_A Chloroplast outer envel 93.3 0.037 1.3E-06 57.4 3.0 23 625-647 41-63 (270)
383 2w58_A DNAI, primosome compone 93.3 0.045 1.5E-06 53.7 3.6 29 624-652 55-83 (202)
384 1zj6_A ADP-ribosylation factor 93.3 0.038 1.3E-06 53.2 2.9 24 622-645 15-38 (187)
385 2a5j_A RAS-related protein RAB 93.3 0.038 1.3E-06 53.5 2.9 23 625-647 23-45 (191)
386 3dz8_A RAS-related protein RAB 93.3 0.035 1.2E-06 53.8 2.6 23 625-647 25-47 (191)
387 1m7b_A RND3/RHOE small GTP-bin 93.3 0.035 1.2E-06 53.4 2.6 22 625-646 9-30 (184)
388 3cph_A RAS-related protein SEC 93.3 0.037 1.3E-06 54.3 2.9 24 623-646 20-43 (213)
389 2iyv_A Shikimate kinase, SK; t 93.3 0.034 1.2E-06 53.7 2.5 24 624-647 3-26 (184)
390 2h17_A ADP-ribosylation factor 93.3 0.034 1.2E-06 53.3 2.5 24 623-646 21-44 (181)
391 3llu_A RAS-related GTP-binding 93.2 0.042 1.4E-06 53.5 3.2 25 624-648 21-45 (196)
392 2o52_A RAS-related protein RAB 93.2 0.039 1.3E-06 54.0 3.0 22 625-646 27-48 (200)
393 2p5s_A RAS and EF-hand domain 93.2 0.04 1.4E-06 53.8 3.0 27 621-647 26-52 (199)
394 1zd9_A ADP-ribosylation factor 93.2 0.039 1.3E-06 53.3 2.9 25 622-646 21-45 (188)
395 1x3s_A RAS-related protein RAB 93.2 0.041 1.4E-06 53.0 3.0 23 624-646 16-38 (195)
396 3i8s_A Ferrous iron transport 93.2 0.039 1.3E-06 57.5 3.0 23 625-647 5-27 (274)
397 1jbk_A CLPB protein; beta barr 93.2 0.038 1.3E-06 52.7 2.7 29 621-649 41-69 (195)
398 2fv8_A H6, RHO-related GTP-bin 93.2 0.025 8.4E-07 55.8 1.3 25 623-647 25-49 (207)
399 2bcg_Y Protein YP2, GTP-bindin 93.2 0.037 1.3E-06 54.2 2.6 23 625-647 10-32 (206)
400 1e6c_A Shikimate kinase; phosp 93.1 0.038 1.3E-06 52.6 2.6 24 624-647 3-26 (173)
401 3bwd_D RAC-like GTP-binding pr 93.1 0.046 1.6E-06 52.0 3.2 24 623-646 8-31 (182)
402 2atv_A RERG, RAS-like estrogen 93.1 0.042 1.5E-06 53.4 2.9 25 622-646 27-51 (196)
403 1ko7_A HPR kinase/phosphatase; 93.1 0.046 1.6E-06 58.2 3.3 33 611-645 134-166 (314)
404 1q57_A DNA primase/helicase; d 93.1 0.046 1.6E-06 62.1 3.6 41 619-665 238-278 (503)
405 1uj2_A Uridine-cytidine kinase 93.0 0.048 1.6E-06 55.9 3.3 26 622-647 21-46 (252)
406 2fu5_C RAS-related protein RAB 93.0 0.032 1.1E-06 53.3 1.9 23 625-647 10-32 (183)
407 3reg_A RHO-like small GTPase; 93.0 0.043 1.5E-06 53.2 2.9 24 624-647 24-47 (194)
408 2f7s_A C25KG, RAS-related prot 93.0 0.048 1.6E-06 53.9 3.2 23 625-647 27-49 (217)
409 2q3h_A RAS homolog gene family 93.0 0.049 1.7E-06 53.0 3.2 25 622-646 19-43 (201)
410 2ew1_A RAS-related protein RAB 92.9 0.042 1.4E-06 54.2 2.6 22 625-646 28-49 (201)
411 2wsm_A Hydrogenase expression/ 92.9 0.04 1.4E-06 54.7 2.5 25 624-648 31-55 (221)
412 2grj_A Dephospho-COA kinase; T 92.9 0.049 1.7E-06 53.8 3.1 25 622-646 11-35 (192)
413 2j1l_A RHO-related GTP-binding 92.9 0.048 1.6E-06 54.1 3.0 23 624-646 35-57 (214)
414 2cjw_A GTP-binding protein GEM 92.8 0.047 1.6E-06 53.2 2.9 22 625-646 8-29 (192)
415 3a1s_A Iron(II) transport prot 92.8 0.051 1.7E-06 56.1 3.2 23 625-647 7-29 (258)
416 3c5c_A RAS-like protein 12; GD 92.8 0.049 1.7E-06 52.7 2.9 23 624-646 22-44 (187)
417 3be4_A Adenylate kinase; malar 92.8 0.049 1.7E-06 54.4 3.0 26 622-647 4-29 (217)
418 4djt_A GTP-binding nuclear pro 92.8 0.032 1.1E-06 55.2 1.6 22 625-646 13-34 (218)
419 2b6h_A ADP-ribosylation factor 92.8 0.052 1.8E-06 52.8 3.1 25 621-645 27-51 (192)
420 1p5z_B DCK, deoxycytidine kina 92.7 0.045 1.5E-06 56.4 2.6 28 620-647 21-48 (263)
421 2gco_A H9, RHO-related GTP-bin 92.7 0.047 1.6E-06 53.4 2.6 22 625-646 27-48 (201)
422 2f6r_A COA synthase, bifunctio 92.7 0.052 1.8E-06 56.8 3.1 22 623-644 75-96 (281)
423 2iwr_A Centaurin gamma 1; ANK 92.7 0.041 1.4E-06 52.3 2.1 23 624-646 8-30 (178)
424 3d3q_A TRNA delta(2)-isopenten 92.7 0.048 1.6E-06 58.8 2.8 25 624-648 8-32 (340)
425 2fh5_B SR-beta, signal recogni 92.6 0.066 2.2E-06 52.7 3.6 24 624-647 8-31 (214)
426 2zts_A Putative uncharacterize 92.6 0.067 2.3E-06 53.9 3.8 26 620-645 27-52 (251)
427 3foz_A TRNA delta(2)-isopenten 92.6 0.057 1.9E-06 57.4 3.2 26 623-648 10-35 (316)
428 3r7w_A Gtpase1, GTP-binding pr 92.6 0.06 2E-06 57.1 3.4 26 622-647 2-27 (307)
429 1gwn_A RHO-related GTP-binding 92.5 0.052 1.8E-06 53.6 2.7 23 624-646 29-51 (205)
430 3zvl_A Bifunctional polynucleo 92.5 0.064 2.2E-06 59.5 3.6 29 619-647 254-282 (416)
431 2yl4_A ATP-binding cassette SU 92.5 19 0.00063 41.4 33.3 84 279-362 27-110 (595)
432 1zuh_A Shikimate kinase; alpha 92.5 0.065 2.2E-06 50.9 3.2 25 623-647 7-31 (168)
433 2atx_A Small GTP binding prote 92.4 0.055 1.9E-06 52.3 2.7 22 625-646 20-41 (194)
434 1sky_E F1-ATPase, F1-ATP synth 92.4 0.033 1.1E-06 62.4 1.2 39 618-657 146-184 (473)
435 2ocp_A DGK, deoxyguanosine kin 92.3 0.059 2E-06 54.7 2.9 26 622-647 1-26 (241)
436 3cnl_A YLQF, putative uncharac 92.3 0.065 2.2E-06 55.6 3.2 26 624-649 100-125 (262)
437 3crm_A TRNA delta(2)-isopenten 92.3 0.066 2.2E-06 57.3 3.2 25 624-648 6-30 (323)
438 2x77_A ADP-ribosylation factor 92.2 0.055 1.9E-06 52.1 2.4 24 622-645 21-44 (189)
439 2g3y_A GTP-binding protein GEM 92.2 0.074 2.5E-06 53.2 3.3 24 624-647 38-61 (211)
440 2x2e_A Dynamin-1; nitration, h 92.0 0.058 2E-06 58.3 2.5 23 625-647 33-55 (353)
441 2yc2_C IFT27, small RAB-relate 92.0 0.036 1.2E-06 54.0 0.8 23 624-646 21-43 (208)
442 3tqf_A HPR(Ser) kinase; transf 92.0 0.17 5.8E-06 49.2 5.4 26 620-645 13-38 (181)
443 1ak2_A Adenylate kinase isoenz 92.0 0.066 2.2E-06 54.1 2.7 26 622-647 15-40 (233)
444 2p65_A Hypothetical protein PF 91.9 0.052 1.8E-06 51.7 1.8 29 621-649 41-69 (187)
445 4gzl_A RAS-related C3 botulinu 91.9 0.068 2.3E-06 52.5 2.6 24 622-645 29-52 (204)
446 3v9p_A DTMP kinase, thymidylat 91.9 0.071 2.4E-06 54.1 2.8 29 621-649 23-51 (227)
447 2hup_A RAS-related protein RAB 91.9 0.07 2.4E-06 52.3 2.7 22 625-646 31-52 (201)
448 3h4m_A Proteasome-activating n 91.8 0.078 2.7E-06 54.9 3.1 29 620-648 48-76 (285)
449 3cpj_B GTP-binding protein YPT 91.8 0.075 2.6E-06 52.9 2.9 22 625-646 15-36 (223)
450 2h92_A Cytidylate kinase; ross 91.8 0.065 2.2E-06 53.2 2.4 25 623-647 3-27 (219)
451 2hf9_A Probable hydrogenase ni 91.7 0.072 2.4E-06 53.0 2.6 25 624-648 39-63 (226)
452 4edh_A DTMP kinase, thymidylat 91.7 0.09 3.1E-06 52.8 3.3 29 621-649 4-32 (213)
453 1puj_A YLQF, conserved hypothe 91.7 0.097 3.3E-06 54.9 3.7 27 622-648 119-145 (282)
454 2i1q_A DNA repair and recombin 91.6 0.093 3.2E-06 55.8 3.5 28 619-646 94-121 (322)
455 1e4v_A Adenylate kinase; trans 91.5 0.086 2.9E-06 52.4 2.9 23 625-647 2-24 (214)
456 3q3j_B RHO-related GTP-binding 91.5 0.086 2.9E-06 52.3 2.9 24 623-646 27-50 (214)
457 2j69_A Bacterial dynamin-like 91.4 0.091 3.1E-06 62.2 3.4 27 621-647 67-93 (695)
458 3ld9_A DTMP kinase, thymidylat 91.4 0.1 3.5E-06 52.8 3.4 29 621-649 19-47 (223)
459 2xb4_A Adenylate kinase; ATP-b 91.4 0.099 3.4E-06 52.5 3.2 23 625-647 2-24 (223)
460 3cmu_A Protein RECA, recombina 91.3 0.47 1.6E-05 61.9 10.0 40 610-650 1067-1108(2050)
461 3l0i_B RAS-related protein RAB 91.2 0.04 1.4E-06 53.8 0.1 23 625-647 35-57 (199)
462 3tmk_A Thymidylate kinase; pho 91.2 0.085 2.9E-06 53.1 2.5 29 621-649 3-31 (216)
463 2orw_A Thymidine kinase; TMTK, 91.2 0.1 3.5E-06 51.0 3.0 27 622-648 2-28 (184)
464 3geh_A MNME, tRNA modification 91.1 0.072 2.5E-06 59.9 2.1 26 621-646 222-247 (462)
465 3lv8_A DTMP kinase, thymidylat 91.1 0.11 3.6E-06 53.2 3.2 29 621-649 25-53 (236)
466 2j0v_A RAC-like GTP-binding pr 91.1 0.092 3.1E-06 51.6 2.6 23 624-646 10-32 (212)
467 4tmk_A Protein (thymidylate ki 91.0 0.11 3.9E-06 52.0 3.2 28 622-649 2-29 (213)
468 3ec1_A YQEH GTPase; atnos1, at 91.0 0.089 3E-06 57.4 2.6 25 622-646 161-185 (369)
469 3gj0_A GTP-binding nuclear pro 90.9 0.067 2.3E-06 53.1 1.4 37 725-761 163-204 (221)
470 2qz4_A Paraplegin; AAA+, SPG7, 90.8 0.1 3.4E-06 53.2 2.7 27 622-648 38-64 (262)
471 2j37_W Signal recognition part 90.8 0.27 9.2E-06 55.8 6.4 28 622-649 100-127 (504)
472 1njg_A DNA polymerase III subu 90.7 0.11 3.6E-06 51.4 2.7 26 625-650 47-72 (250)
473 3io5_A Recombination and repai 90.6 0.1 3.4E-06 55.7 2.5 41 620-667 26-67 (333)
474 3h2y_A GTPase family protein; 90.6 0.089 3.1E-06 57.3 2.1 26 622-647 159-184 (368)
475 3cmu_A Protein RECA, recombina 90.4 0.64 2.2E-05 60.6 10.0 31 620-650 1424-1454(2050)
476 2b8t_A Thymidine kinase; deoxy 90.4 0.13 4.5E-06 52.0 3.0 28 621-648 10-37 (223)
477 2qpt_A EH domain-containing pr 90.3 0.12 4E-06 59.6 2.9 24 624-647 66-89 (550)
478 3eph_A TRNA isopentenyltransfe 90.3 0.11 3.7E-06 57.2 2.5 24 624-647 3-26 (409)
479 2r62_A Cell division protease 90.3 0.057 1.9E-06 55.5 0.2 29 617-647 40-68 (268)
480 3th5_A RAS-related C3 botulinu 89.7 0.054 1.8E-06 53.0 0.0 25 622-646 29-53 (204)
481 3gee_A MNME, tRNA modification 90.2 0.098 3.4E-06 59.1 2.1 25 622-646 232-256 (476)
482 3n70_A Transport activator; si 90.2 0.16 5.4E-06 47.3 3.2 31 622-652 23-53 (145)
483 2hjg_A GTP-binding protein ENG 90.0 0.15 5E-06 56.8 3.3 24 624-647 176-199 (436)
484 3umf_A Adenylate kinase; rossm 89.9 0.12 4.1E-06 52.1 2.3 29 619-647 25-53 (217)
485 1f5n_A Interferon-induced guan 89.7 0.14 4.7E-06 59.3 2.8 49 591-647 14-62 (592)
486 1qvr_A CLPB protein; coiled co 89.7 0.17 5.8E-06 61.3 3.8 124 623-762 191-343 (854)
487 3p32_A Probable GTPase RV1496/ 89.6 0.18 6.2E-06 54.5 3.6 28 622-649 78-105 (355)
488 1xp8_A RECA protein, recombina 89.4 0.16 5.6E-06 55.2 3.1 41 620-667 71-111 (366)
489 2hjg_A GTP-binding protein ENG 89.3 0.15 5.3E-06 56.6 2.9 23 625-647 5-27 (436)
490 2v3c_C SRP54, signal recogniti 89.3 0.081 2.8E-06 59.0 0.6 38 624-668 100-137 (432)
491 1wxq_A GTP-binding protein; st 89.2 0.17 5.8E-06 55.7 3.0 23 625-647 2-24 (397)
492 2chg_A Replication factor C sm 89.0 0.15 5E-06 49.7 2.1 24 625-648 40-63 (226)
493 1tue_A Replication protein E1; 88.8 0.14 4.6E-06 51.3 1.7 28 620-647 55-82 (212)
494 3syl_A Protein CBBX; photosynt 88.8 0.17 5.7E-06 53.0 2.5 28 622-649 66-93 (309)
495 2bjv_A PSP operon transcriptio 88.6 0.31 1.1E-05 49.9 4.3 31 622-652 28-58 (265)
496 2v1u_A Cell division control p 88.4 0.14 4.9E-06 54.9 1.7 29 621-649 42-70 (387)
497 3sjy_A Translation initiation 88.4 0.22 7.5E-06 54.8 3.2 23 625-647 10-32 (403)
498 2qgz_A Helicase loader, putati 88.3 0.2 6.8E-06 53.1 2.7 26 623-648 152-177 (308)
499 1ypw_A Transitional endoplasmi 88.1 0.094 3.2E-06 63.2 -0.0 34 615-648 503-536 (806)
500 1lnz_A SPO0B-associated GTP-bi 88.0 0.22 7.5E-06 53.7 2.8 32 616-647 151-182 (342)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.3e-76 Score=742.72 Aligned_cols=549 Identities=17% Similarity=0.147 Sum_probs=412.1
Q ss_pred HHhhc-cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcC---------------CCCChhHHHHHHH-HH---HHHHHH
Q 004004 222 FQRGR-IQKLELLHIPPIPQSETANDASSLLEESLRKQKT---------------DATSLPQVIIHAV-WK---SLALNA 281 (779)
Q Consensus 222 l~~G~-~~~L~~~Dl~~l~~~~~a~~~~~~f~~~w~~~~~---------------~~~~l~~~l~~~~-~~---~~~~~~ 281 (779)
++.|. |++|+.+|.+++.|+|..+...+.+++.|.+... .++--++.++|.- ++ -++++.
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g~ 81 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGT 81 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCchhhcCCcccccccCCchhhcccccchhhhhcccccccccccchhhhhhhcccCCCCHHHHhhccChHHHHHHHHHH
Confidence 45554 5679999999999999999888888877754310 1122345565521 22 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------CC------CCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 282 AFAGVNTIASYIGPFLITNFVSFLSG-------KH------DHS-----SYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (779)
Q Consensus 282 ~~~l~~~~~~~~~P~ll~~li~~l~~-------~~------~~~-----~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (779)
+++++..+..-+.+++++.+++.+.+ .. ... .......++..++...+...++.....+...
T Consensus 82 ~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 161 (1321)
T 4f4c_A 82 LVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYL 161 (1321)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333444556666654311 00 000 0011111111111111112222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004004 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (779)
Q Consensus 344 r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~-~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l 419 (779)
.+|.|+-..++..+|+|.++++.. .+++|+++|++++|++++++++ ..+..++..++.++.++++++. +.|..++
T Consensus 162 ~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~-~~~~l~l 240 (1321)
T 4f4c_A 162 YVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFT-HSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455556666667889999999854 4589999999999999999977 4577888888888877777664 3446667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (779)
Q Consensus 420 ~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (779)
+.++++++.+++...+.++.++..++.++..+++.+.++|.++|||+||+|+||+.+.+++.+..++..+...+......
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG 320 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888899999999999999999999999999999999999999999988887765555544333333333
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 004004 500 AIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (779)
Q Consensus 500 ~~~~~~~~~--p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 577 (779)
......... ...+.++.+|++.+.++.+|+|.+++++.++..+..|+..++..+..+.++.+|++||.++++.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 222222222 223345567888888999999999999999999999999999999999999999999999998765433
Q ss_pred CCCC--CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 578 PITE--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 578 ~~~~--~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
+..+ .+..+.++.|+++|++|+|+. .++.|+|+ |+||+|++|+++|||||||||||||+++|+|+|+|++| +|
T Consensus 401 ~~~~~~~~~~~~~g~I~~~nvsF~Y~~---~~~~~vL~-~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G-~I 475 (1321)
T 4f4c_A 401 SSSKAGRKDMKIKGDITVENVHFTYPS---RPDVPILR-GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG-KI 475 (1321)
T ss_dssp CSSSCCCCCCCCCCCEEEEEEEECCSS---STTSCSEE-EEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE-EE
T ss_pred ccccccccCCCCCCcEEEEEeeeeCCC---CCCCceee-ceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccC-cc
Confidence 2221 122233467999999999986 44578999 99999999999999999999999999999999999999 99
Q ss_pred EEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 656 ~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++| +||||+|+||||||||||||+||+| .+++++.++++.|++++|++.||+||+|+|||+|.||
T Consensus 476 ~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~L 555 (1321)
T 4f4c_A 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL 555 (1321)
T ss_dssp EETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCC
T ss_pred cCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCC
Confidence 9999 5999999999999999999999987 7899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
||||||||+||||+|+||+||||||||||||++|| +++++|+.+++++ -.+.|+|
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te-~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH-HHHHHHHHHHHTTSEEEEECS
T ss_pred CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHH-HHHHHHHHHHhCCCEEEEEcc
Confidence 99999999999999999999999999999999996 5667788877653 2344555
No 2
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.2e-70 Score=640.69 Aligned_cols=503 Identities=21% Similarity=0.245 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH----YGLVLASVFLFAKTVESLTQRQWYFGA 342 (779)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~----~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (779)
+.+++.+++.++...++.++..++..+.|++++.++|.+....+..... ..+.+++++++..++..+......+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T 4a82_A 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLA 85 (578)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999876543111111 113334444444555555555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPA 418 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~ 418 (779)
.+++.++...++..+|+|.++++.. ..++|+++|++++|++++.+++.. ++.+|..++.+++++++++..-+ ..+
T Consensus 86 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~ 164 (578)
T 4a82_A 86 QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV-KLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT-TTH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHH
Confidence 7899999999999999999999864 459999999999999999998753 67788888888877777765443 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (779)
Q Consensus 419 l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (779)
+++++++++.+++...+.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++++.++++.+...+.....
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777888899999999999999999999999999999999999999998888877666655544443333
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 004004 499 SAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (779)
Q Consensus 499 ~~~~~~~~~~p--~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 576 (779)
........... ..+.++.++++.+..+.+|+|.+++++.++..+..|+..++..+..+.++.+|++||.++++.++..
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 324 (578)
T 4a82_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 32222211111 1234566788888889999999999999999999999999999999999999999999999876543
Q ss_pred CCCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 577 KPITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 577 ~~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
++... .+....++.|+++|++|+|++ .+.++|+ |+||+|++||++||+||+|||||||+++|+|+++|++| +|
T Consensus 325 ~~~~~~~~~~~~~~~i~~~~v~~~y~~----~~~~~l~-~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i 398 (578)
T 4a82_A 325 KNGVGAQPIEIKQGRIDIDHVSFQYND----NEAPILK-DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QI 398 (578)
T ss_dssp CCCTTCCCCCCCSCCEEEEEEEECSCS----SSCCSEE-EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EE
T ss_pred cCCCCccccCCCCCeEEEEEEEEEcCC----CCCccee-eeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EE
Confidence 32211 111223467999999999975 2467999 99999999999999999999999999999999999999 99
Q ss_pred EEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 656 ~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.++| +++||+|+|++|++||+|||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+|
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred EECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 9998 4999999999999999999999976 5678899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
||||||||+||||+++||+|+||||||||||+++++.+.+ ++....++ -++.|+|
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH 534 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAH 534 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECS
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHcCCCEEEEEec
Confidence 9999999999999999999999999999999999887754 55544332 2344555
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-69 Score=628.81 Aligned_cols=502 Identities=18% Similarity=0.254 Sum_probs=390.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (779)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (779)
.+.++.+++.+|+.++...++.++..++..+.|++++.++|...... . ....+.+++.+++..++..+......+..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG--D-FSLVLKTGILMLIVALIGAVGGIGCTVFA 87 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999999999999999875433 1 11111222222222222222222223334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004004 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPA 418 (779)
Q Consensus 343 ~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~ 418 (779)
.+.+.++...++..+|+|.++++.. ..++|+++|++++|++++++++.. +..++..++.++.++++++. +.|..+
T Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~ 166 (587)
T 3qf4_A 88 SYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVS-INVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4566666777777889999998764 348999999999999999998754 44555566666666555543 232455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHH----HHHHHHHHHH
Q 004004 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLR----EIERDSLKKY 494 (779)
Q Consensus 419 l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R----~~E~~~l~~~ 494 (779)
++.++++++++++..++.++.++..++.++..+++.+.++|.++|+++||.|++|+.+.+++++.. +.+.+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677777888888888999999999999999999999999999999998777665543 3333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004004 495 LYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (779)
Q Consensus 495 ~~~~~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 574 (779)
........ .......+.++.++++.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|.+|+.++++.++
T Consensus 247 ~~~~~~~~--~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 247 VFALPLFI--FIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 22111111 1222334556678888888999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCC
Q 004004 575 QKKPITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (779)
Q Consensus 575 ~~~~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~ 653 (779)
..++... .+..+.++.|+++|++|+|++ .++++|+ |+||+|++||+++||||+|||||||+++|+|+++|++|
T Consensus 325 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~----~~~~~l~-~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G- 398 (587)
T 3qf4_A 325 AIEEADNALALPNVEGSVSFENVEFRYFE----NTDPVLS-GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG- 398 (587)
T ss_dssp SCCCCTTCBCCSCCCCCEEEEEEEECSSS----SSCCSEE-EEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE-
T ss_pred ccCCCCCccccCCCCCcEEEEEEEEEcCC----CCCccee-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc-
Confidence 4332211 111223467999999999975 2467999 99999999999999999999999999999999999999
Q ss_pred eEEEcC-------------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 654 ~I~i~g-------------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
+|.++| +++||||+|++|++||||||.+|.+ .+++++.++++.|+++++++.+|+|++|.+||+|.
T Consensus 399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~ 478 (587)
T 3qf4_A 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478 (587)
T ss_dssp EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSC
T ss_pred EEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCC
Confidence 999988 3999999999999999999999975 67889999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
+|||||||||+||||+++||+|+||||||||||++++++|.+. +....+ .-++.|+|
T Consensus 479 ~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH 536 (587)
T 3qf4_A 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG-LKRYTKGCTTFIITQ 536 (587)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHH-HHHHSTTCEEEEEES
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHhCCCCEEEEEec
Confidence 9999999999999999999999999999999999999998874 444322 23344555
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-69 Score=635.26 Aligned_cols=497 Identities=19% Similarity=0.232 Sum_probs=403.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIR 348 (779)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~ 348 (779)
+++.+++.++...++.++..++..+.|++++.++|.+..+. ... ....+++++++..++..+......+...+++.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (598)
T 3qf4_B 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR--RFD-LLPRYMLILGTIYALTSLLFWLQGKIMLTLSQD 107 (598)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--CGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999876433 111 112222223333334444444444455677888
Q ss_pred HHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004004 349 VRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (779)
Q Consensus 349 lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~ 424 (779)
+...++..+|+|.++++.. ..++|+++|++++|++++.+++. .++.++..++.+++++++++..-. ..+++.+++
T Consensus 108 ~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-~l~l~~l~~ 186 (598)
T 3qf4_B 108 VVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNV-ILSLVTLSI 186 (598)
T ss_dssp HHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888889999999999865 34899999999999999999875 578888888888887777765443 666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (779)
Q Consensus 425 ~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 504 (779)
+++.+++...+.+..++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++.+++..+...+...........
T Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (598)
T 3qf4_B 187 VPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPL 266 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888899999999999999999999999999999999999999999999888777766655544443322222
Q ss_pred HHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 004004 505 FWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEP 582 (779)
Q Consensus 505 ~~~~--p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 582 (779)
.... ...+.++.++++.+..+.+++|.+++++.+...+..|+..++..+..+.++.+|.+|+.++++.++..++....
T Consensus 267 ~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 346 (598)
T 3qf4_B 267 MNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAV 346 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 1111 12334566788888889999999999999999999999999999999999999999999999876643322111
Q ss_pred CCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---
Q 004004 583 TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (779)
Q Consensus 583 ~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--- 659 (779)
+..+.++.|+++|++|+|++ +.++|+ |+||+|++||++||+||+|||||||+++|+|+++|++| +|.++|
T Consensus 347 ~~~~~~~~i~~~~v~~~y~~-----~~~~l~-~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~i 419 (598)
T 3qf4_B 347 ELREVRGEIEFKNVWFSYDK-----KKPVLK-DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG-QILVDGIDI 419 (598)
T ss_dssp CCCSCCCCEEEEEEECCSSS-----SSCSCC-SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE-EEEETTEEG
T ss_pred CCCCCCCeEEEEEEEEECCC-----CCcccc-ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe-EEEECCEEh
Confidence 12223457999999999974 357999 99999999999999999999999999999999999999 999998
Q ss_pred ----------eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ----------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ----------~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
+++||+|+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred hhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 4999999999999999999999975 67888999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|+||||+++||+|+||||||||||++++++|.+ ++....+ .-++.|+|
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH 548 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQA-AMWKLMEGKTSIIIAH 548 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHHTTSEEEEESC
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHcCCCEEEEEec
Confidence 999999999999999999999999999999865 4544432 23444555
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.8e-66 Score=606.67 Aligned_cols=497 Identities=18% Similarity=0.208 Sum_probs=397.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (779)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (779)
+.+.+.+++.++...++.++..++..+.|++++.++|.+.... .. ...+.+++++++..++..+......+...+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (582)
T 3b5x_A 17 WTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA--ES-NFLRILPFMILGLMFVRGLSGFASSYCLSWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888889999999999999999999875432 11 11222222233344455555555556677888
Q ss_pred HHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004004 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (779)
Q Consensus 347 ~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~-~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l 422 (779)
.++...++..+|+|.++++.. ..++|+++|++++|++++.+++ ..+..++..++.+++++++++. +.|..+++.+
T Consensus 94 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l 172 (582)
T 3b5x_A 94 GNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW-NSWQLSLVLI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 999999999999999999853 4489999999999999999975 4577888888887777766664 4445666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 004004 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTC 498 (779)
Q Consensus 423 ~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~~~~ 498 (779)
+++++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++ .++.+.+..+......
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3b5x_A 173 VVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777888888899999999999999999999999999999999987766654 4444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 004004 499 SAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (779)
Q Consensus 499 ~~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 578 (779)
....++.... .+.++.++++.+..+.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..++
T Consensus 253 ~~~~~~~~~~--~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 253 PVIQMIASLA--LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 3333222222 23356678888888999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc
Q 004004 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (779)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~ 658 (779)
.. .+..+..+.|+++|++|+|++ + ++++|+ |+||+|++||+++|+||+|||||||+++|+|+++|++| +|.++
T Consensus 331 ~~-~~~~~~~~~i~~~~v~~~y~~---~-~~~~l~-~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~ 403 (582)
T 3b5x_A 331 GK-YEAERVNGEVDVKDVTFTYQG---K-EKPALS-HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG-SICLD 403 (582)
T ss_pred CC-CCCCCCCCeEEEEEEEEEcCC---C-Cccccc-cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEEC
Confidence 11 111122356999999999974 1 257899 99999999999999999999999999999999999999 99998
Q ss_pred C-------------eEEEEccccccCCCcHHHHhccCC--CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 659 G-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 659 g-------------~iayV~Q~pwI~ngTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
| +++||||+|++|++||+|||.+|. +.++++++++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 8 489999999999999999999986 4678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||++||||+++||+|+||||||||||+++++++.+ ++....+ .-++.|+|
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH 537 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA-ALDELQKNKTVLVIAH 537 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHcCCCEEEEEec
Confidence 99999999999999999999999999999999998765 4544332 22445555
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.2e-66 Score=607.60 Aligned_cols=496 Identities=17% Similarity=0.200 Sum_probs=395.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (779)
.+.+.+++.++...++.++..++..+.|++++.++|.+.... . ....+.+++++++..++..++.....+...+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (582)
T 3b60_A 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--D-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSG 94 (582)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--T-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888889999999999999999999765432 1 1112222222333444455555555566778889
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~-~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
++...++..+|+|.++++.. ..++|+++|++++|++.+.+++ ..+..++..++.+++++++++. +.|..+++.++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~ 173 (582)
T 3b60_A 95 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY-YSWQLSIILVV 173 (582)
T ss_dssp HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 99999999999999999865 3489999999999999999975 4577888888888777776665 44456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 004004 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTCS 499 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~~~~~ 499 (779)
++++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++ .++.+.+..+.......
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3b60_A 174 LAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDP 253 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777778888888999999999999999999999999999999999987776654 44444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 500 ~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
...++.... .+.++.++++.+..+.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..++.
T Consensus 254 ~~~~~~~~~--~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 331 (582)
T 3b60_A 254 IIQLIASLA--LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG 331 (582)
T ss_dssp HHHHHHHHH--HHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 332222222 223455677777788999999999999999999999999999999999999999999999876543221
Q ss_pred CCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 580 ~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
. .+..+..+.|+++|++|+|++ + ++++|+ |+||+|++||+++|+||+|||||||+++|+|+++|++| +|.++|
T Consensus 332 ~-~~~~~~~~~i~~~~v~~~y~~---~-~~~~l~-~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~~g 404 (582)
T 3b60_A 332 K-RVIDRATGDLEFRNVTFTYPG---R-EVPALR-NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDG 404 (582)
T ss_dssp C-BCCSCCCCCEEEEEEEECSSS---S-SCCSEE-EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETT
T ss_pred C-CCCCCCCCcEEEEEEEEEcCC---C-CCcccc-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC-eEEECC
Confidence 1 111122356999999999974 1 257899 99999999999999999999999999999999999999 999998
Q ss_pred -------------eEEEEccccccCCCcHHHHhccCC--CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------------~iayV~Q~pwI~ngTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+++||||+|++|++||+|||.+|. +.++++++++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 389999999999999999999986 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
||||++||||+++||+|+||||||||||+++++++.+ ++....+ .-++.|+|
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH 537 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAH 537 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH-HHHHHhCCCEEEEEec
Confidence 9999999999999999999999999999999998764 4544432 22445555
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.1e-66 Score=606.02 Aligned_cols=501 Identities=20% Similarity=0.212 Sum_probs=390.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (779)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (779)
.+++.+++.++..+++.++..++..+.|++++.++|.+............+.+++++++..++..+......+...+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (595)
T 2yl4_A 12 GLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQ 91 (595)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888889999999999999999976432210111111122222222333334444444455677889
Q ss_pred HHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFF-LYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~-~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
++...++..+|+|.++++.. .+++|+++|++++|++.+++++ ..+..++..++.+++++++++. +.|..+++.++
T Consensus 92 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~l~li~l~ 170 (595)
T 2yl4_A 92 RIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFF-VSPNLATFVLS 170 (595)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 99999999999999999864 3489999999999999999875 4567777777777776666654 34355566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 004004 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTCS 499 (779)
Q Consensus 424 ~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~~~~~ 499 (779)
++++.+++...+.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++ .++.+.+..+.......
T Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (595)
T 2yl4_A 171 VVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG 250 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778888888999999999999999999999999999999999977666654 34444443333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 500 ~~~~~~~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
...++. ....+.++.++++.+..+.+|+|.+++++.+...+..|+..++..+..+.++.++.+|+.++++.++..++.
T Consensus 251 ~~~~~~--~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 328 (595)
T 2yl4_A 251 ATGLSG--NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN 328 (595)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 222211 222344566788888899999999999999999999999999999999999999999999999875432221
Q ss_pred CC-CCCCCCCcc-EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 580 TE-PTSKASDVA-IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 580 ~~-~~~~~~~~~-I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
.. .+.....+. |+++|++|+|++ +.+.++|+ |+||+|++||+++|+||+|||||||+++|+|+++|++| +|.+
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~---~~~~~vl~-~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~ 403 (595)
T 2yl4_A 329 EGVILNEKSFQGALEFKNVHFAYPA---RPEVPIFQ-DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG-TISL 403 (595)
T ss_dssp CSBCCCTTTCCCCEEEEEEEEECSS---CTTSEEEE-EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE-EEEE
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCC---CCCCcccc-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEE
Confidence 11 111122356 999999999975 22357899 99999999999999999999999999999999999999 9999
Q ss_pred cC-------------eEEEEccccccCCCcHHHHhccCCC----CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCC
Q 004004 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (779)
Q Consensus 658 ~g-------------~iayV~Q~pwI~ngTIreNIlfG~~----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n 720 (779)
+| +++||+|+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 98 3899999999999999999999875 578899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 721 LSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
|||||||||+||||+++||+|+|||||||+||+++++.+.+ ++....+ .-++.|+|
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH 540 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE-ALDRLMDGRTVLVIAH 540 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHH-HHHHHHTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHH-HHHHHhcCCEEEEEec
Confidence 99999999999999999999999999999999999988754 4544332 23445555
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-64 Score=639.56 Aligned_cols=498 Identities=17% Similarity=0.185 Sum_probs=359.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 272 AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRS 351 (779)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~ 351 (779)
.+|..++++.+...+........++++...++....... .....+..+++.+++..++..++.....+...+.+.++..
T Consensus 749 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~ 827 (1321)
T 4f4c_A 749 PHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA-DFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTR 827 (1321)
T ss_dssp GGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666667778888876654331 1122233333333333333344433334445567777777
Q ss_pred HHHHHHHHHHhcccCC--C---CChHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004004 352 ALTVLIYKRSMAIKFA--G---PSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFST 425 (779)
Q Consensus 352 ~L~~~iy~K~L~ls~~--~---~~sG~ivnlms~Dv~~i~~~~~-~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~~~ 425 (779)
.+...+|+|.++.+.. . .++|+++|++++|++.+.+.+. .+..+....+.++.++++++. .+|..+++.++++
T Consensus 828 ~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~-~~~~l~lv~l~~~ 906 (1321)
T 4f4c_A 828 DLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF-YGWQMALLIIAIL 906 (1321)
T ss_dssp HHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH-HhHHHHHHHHHHH
Confidence 7888889999987753 2 3799999999999999998763 455666666666555555543 3334445445444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 426 IFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505 (779)
Q Consensus 426 ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~ 505 (779)
+++........+...+.+.+..+...+......|.++|+++||.|++|+.+.+++.+.-+...+...+............
T Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1321)
T 4f4c_A 907 PIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCA 986 (1321)
T ss_dssp HHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444555556667777888999999999999999999988887655443333222222222211111
Q ss_pred HHHH--HHHHHHHHHHHHHhcCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 004004 506 WASP--TLVSVITFGVCILLKTP--LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE 581 (779)
Q Consensus 506 ~~~p--~lv~~~~f~~~~l~~~~--Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 581 (779)
.... ..+.++.++.+.+..+. +.++.++..+..+.....|+..+......+.++..+.+|+.++++.++..++...
T Consensus 987 ~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 1066 (1321)
T 4f4c_A 987 SSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL 1066 (1321)
T ss_dssp TTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC
T ss_pred HHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC
Confidence 1111 11223344555554444 5566667766666666778888888999999999999999999987654332221
Q ss_pred -CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-
Q 004004 582 -PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG- 659 (779)
Q Consensus 582 -~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g- 659 (779)
.+..+..+.|+|+|++|+|++ +++.|+|+ |+||+|+|||++|||||||||||||+++|+|+|+|++| +|.++|
T Consensus 1067 ~~~~~~~~g~I~f~nVsf~Y~~---~~~~~VL~-~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~iDG~ 1141 (1321)
T 4f4c_A 1067 AGEKKKLYGKVIFKNVRFAYPE---RPEIEILK-GLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG-EIFIDGS 1141 (1321)
T ss_dssp CSBCCCCCCCEEEEEEEECCTT---SCSSCSEE-EEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS-EEEETTE
T ss_pred CCCCCCCCCeEEEEEEEEeCCC---CCCCcccc-ceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCC-EEEECCE
Confidence 222334568999999999986 44568999 99999999999999999999999999999999999999 999998
Q ss_pred ------------eEEEEccccccCCCcHHHHhccCC---CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 ------------KKAYVPQSSWIQTGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 ------------~iayV~Q~pwI~ngTIreNIlfG~---~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
+++||||+|+||+|||||||.||. ++++++.+++++.|+++++++.||+|+||+|||+|.|||||
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgG 1221 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHH
T ss_pred EhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHH
Confidence 499999999999999999999994 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~~ 777 (779)
||||||||||+++||+|+||||||||||++||+.|.+ .+....++ -++.|+|
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~-~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE-ALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHH-HHTTTSSSSEEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHH-HHHHHcCCCEEEEecc
Confidence 9999999999999999999999999999999988754 45443332 3455666
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.8e-62 Score=614.26 Aligned_cols=499 Identities=16% Similarity=0.148 Sum_probs=373.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCc----------chhHHHHHHHHHHHHHHHHHHH
Q 004004 272 AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH-------DHS----------SYHYGLVLASVFLFAKTVESLT 334 (779)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~-------~~~----------~~~~g~~l~~~l~~~~~~~~l~ 334 (779)
.+|..++++.++.++..++..+.|++++.+++.+.... +.. .......++..++...++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888888888888887643110 000 0011111222222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004004 335 QRQWYFGANRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILY 410 (779)
Q Consensus 335 ~~~~~~~~~r~~~~lR~~L~~~iy~K~L~ls~~---~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~ 410 (779)
.....+...+.+.++-..++..+|+|.++++.. .+++|+++|++++|++.+++.+.. +..+....+.++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333345667777778888899999999864 458999999999999999998753 4455555555555555444
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHH
Q 004004 411 KNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDS 490 (779)
Q Consensus 411 ~~lg~~~~l~~l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~ 490 (779)
. +.|..+++.+++++++.++...+.+..++..++.++..++..+.+.|.++||++||.|++|+.+.+++++..+.-.+.
T Consensus 205 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~ 283 (1284)
T 3g5u_A 205 T-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRL 283 (1284)
T ss_dssp H-TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3 444556666666677777778888888888888899999999999999999999999999988777776554333332
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 491 LKKYLYTCSAIAFLF--WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQE 568 (779)
Q Consensus 491 l~~~~~~~~~~~~~~--~~~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~ 568 (779)
..+............ ......+.++.+|.+.+..+.+++|.+++++.+......|+..+...+..+.++.++.+|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 363 (1284)
T 3g5u_A 284 GIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363 (1284)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111111111 111223345667888888899999999988888888889999999999999999999999999
Q ss_pred HhccccCCCCC-CC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 569 FIKEDNQKKPI-TE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 569 fL~~~e~~~~~-~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++.++..++. .. .+....++.|+++|++|+|++ ..+.++|+ |+||+|++||++|||||+|||||||+++|+|+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~---~~~~~vL~-~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPS---RKEVQILK-GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSS---TTSCCSEE-EEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred HHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCC---CCCCccee-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99875432211 11 111223467999999999985 33457999 99999999999999999999999999999999
Q ss_pred ccCCCCCeEEEcCe-------------EEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCc
Q 004004 647 IPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLS 712 (779)
Q Consensus 647 ~~~~~G~~I~i~g~-------------iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T 712 (779)
++|++| +|.++|. +|||+|+||+|++||+|||.||.+ .++++++++++.|+++++++.+|+|++|
T Consensus 440 ~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 440 YDPLDG-MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp SCCSEE-EEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCCe-EEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 999999 9999994 999999999999999999999975 7889999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
.+||+|.+|||||||||+||||+|+||+|+||||||||||+++++.+. +++....+ .-++.|+|
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH 583 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ-AALDKAREGRTTIVIAH 583 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH-HHHHHHHTTSEEEEECS
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHcCCCEEEEEec
Confidence 999999999999999999999999999999999999999999987654 45544332 23445555
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.4e-56 Score=558.55 Aligned_cols=488 Identities=16% Similarity=0.195 Sum_probs=360.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 269 IIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (779)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (779)
+.+.+|+.++.+.++.++..++..+.|+++..+++......... .......++..+++..++..+......+...+.+.
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~ 778 (1284)
T 3g5u_A 699 LNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGE 778 (1284)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677778888888888888899998888765433111 11111122222222222333332223334456777
Q ss_pred HHHHHHHHHHHHHHhcccCC-----CCChHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004004 348 RVRSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (779)
Q Consensus 348 ~lR~~L~~~iy~K~L~ls~~-----~~~sG~ivnlms~Dv~~i~~~~~~-~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~ 421 (779)
++...+...+|+|.++.+.. ..++|+++|++++|++.+.+++.. +..+....+.++.++++++ .++|..+++.
T Consensus 779 ~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~-~~~~~l~lv~ 857 (1284)
T 3g5u_A 779 ILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL-IYGWQLTLLL 857 (1284)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCSSSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence 88888888899999998753 348999999999999999987743 4444444444444444433 2343444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (779)
Q Consensus 422 l~~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (779)
++++++++.+.....+...+...+..+..++..+...|.++|+++||.+++|+.+.+++.+..+...+...+........
T Consensus 858 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1284)
T 3g5u_A 858 LAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGIT 937 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666667777777777888889999999999999999999998888765444333222222211111
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 004004 502 AFLFWA--SPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (779)
Q Consensus 502 ~~~~~~--~p~lv~~~~f~~~~l~~~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 579 (779)
..+... ....+.++.++.+.+..+.++.+.++.++.++.....|+..+......+.++..+.+|+.++++.++..+..
T Consensus 938 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 1017 (1284)
T 3g5u_A 938 FSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSY 1017 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 111111 111223445566666678899999999888888888899988888888999999999999999875433221
Q ss_pred CC--CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 580 TE--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 580 ~~--~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
.. .+....++.|+++|++|+|++ ..+.++|+ |+||+|++||++|||||+|||||||+++|+|+++|++| +|.+
T Consensus 1018 ~~~~~~~~~~~g~i~~~~v~~~y~~---~~~~~~l~-~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G-~I~i 1092 (1284)
T 3g5u_A 1018 STQGLKPNMLEGNVQFSGVVFNYPT---RPSIPVLQ-GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG-SVFL 1092 (1284)
T ss_dssp CSSCCCTTTTSCCEEEEEEEBCCSC---GGGCCSBS-SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE-EEES
T ss_pred ccccccccCCCCcEEEEEEEEECCC---CCCCeeec-ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEE
Confidence 11 111223467999999999975 33357999 99999999999999999999999999999999999999 9999
Q ss_pred cC-------------eEEEEccccccCCCcHHHHhccCCC---CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 658 ~g-------------~iayV~Q~pwI~ngTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
+| +++||||+|.+|++||+|||.+|.+ .++++.+++++.+++++.++.+|+|++|.+||+|.+|
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred CCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 88 4899999999999999999999875 5788899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
||||||||+||||++++|+|+|||||||+||+++++.|.+.
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~ 1213 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999877653
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.8e-47 Score=411.25 Aligned_cols=217 Identities=23% Similarity=0.414 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCC-CCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcC
Q 004004 553 ISMIAQTKVSLYRIQEFIKEDNQKKPITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGS 631 (779)
Q Consensus 553 i~~~~~a~vS~~RI~~fL~~~e~~~~~~~-~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~ 631 (779)
...+.++.++++|+.++++.++...+... .+.....+.|+++|++|+|+. ..++|+ |+||+|++||++|||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~-----~~~vL~-~isl~i~~Ge~vaivG~ 88 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD-----GRETLQ-DVSFTVMPGQTLALVGP 88 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST-----TCEEEE-EEEEEECTTCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC-----CCceee-eeeEEEcCCCEEEEECC
Confidence 34567788999999999986543222111 111223457999999999964 257899 99999999999999999
Q ss_pred CCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHc
Q 004004 632 VGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGC 697 (779)
Q Consensus 632 sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac 697 (779)
+|||||||+++|+|+++|++| +|.++|. ++||+|+|++|++||+|||.||.+ .++++.+++++.+
T Consensus 89 sGsGKSTLl~ll~gl~~p~~G-~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~ 167 (306)
T 3nh6_A 89 SGAGKSTILRLLFRFYDISSG-CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAA 167 (306)
T ss_dssp SCHHHHHHHHHHTTSSCCSEE-EEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHcCCCCCCc-EEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHh
Confidence 999999999999999999999 9999983 999999999999999999999975 6788999999999
Q ss_pred cchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH-HHhHhc
Q 004004 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ-LLFSIN 776 (779)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~-~~~~~~ 776 (779)
++.++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+. +..+.++ -++.|+
T Consensus 168 ~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~-l~~l~~~~Tvi~it 246 (306)
T 3nh6_A 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS-LAKVCANRTTIVVA 246 (306)
T ss_dssp TCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHH-HHHHHTTSEEEEEC
T ss_pred CcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998653 4433222 234455
Q ss_pred c
Q 004004 777 H 777 (779)
Q Consensus 777 ~ 777 (779)
|
T Consensus 247 H 247 (306)
T 3nh6_A 247 H 247 (306)
T ss_dssp C
T ss_pred c
Confidence 5
No 12
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.8e-41 Score=347.92 Aligned_cols=170 Identities=41% Similarity=0.719 Sum_probs=159.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..|+++|++++|+. .+.++|+ ++||+|++|++++|+||+|||||||+++|+|.++|.+| +|.++|+++|++|+|
T Consensus 5 ~~l~~~~l~~~y~~----~~~~il~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~i~~v~q~~ 78 (229)
T 2pze_A 5 TEVVMENVTAFWEE----GGTPVLK-DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSGRISFCSQFS 78 (229)
T ss_dssp EEEEEEEEEECSST----TSCCSEE-EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEECSCEEEECSSC
T ss_pred ceEEEEEEEEEeCC----CCceeee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc-EEEECCEEEEEecCC
Confidence 46899999999963 1357899 99999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 004004 669 WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (779)
Q Consensus 669 wI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~ 748 (779)
+++++|++|||.|+..+++.+++++++++++.++++.+|.|++|.+++++.+||||||||++||||++++|+++||||||
T Consensus 79 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 79 WIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp CCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred cccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999998777777788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 004004 749 SAVDAHTGTHLFKART 764 (779)
Q Consensus 749 SALDa~t~~~If~~~i 764 (779)
|+||+++.+.+++.++
T Consensus 159 s~LD~~~~~~i~~~l~ 174 (229)
T 2pze_A 159 GYLDVLTEKEIFESCV 174 (229)
T ss_dssp TTSCHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999887544
No 13
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=346.51 Aligned_cols=168 Identities=49% Similarity=0.917 Sum_probs=157.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pw 669 (779)
.|+++|++++|+. .+.++|+ ++||+|++|++++|+||+|||||||+++|+|.++|.+| +|.++|.++||+|+|+
T Consensus 3 ~l~~~~l~~~y~~----~~~~vl~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~i~~v~Q~~~ 76 (237)
T 2cbz_A 3 SITVRNATFTWAR----SDPPTLN-GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVAIKGSVAYVPQQAW 76 (237)
T ss_dssp CEEEEEEEEESCT----TSCCSEE-EEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE-EEEECSCEEEECSSCC
T ss_pred eEEEEEEEEEeCC----CCCceee-eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEEEEcCCCc
Confidence 3899999999963 1357899 99999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 670 I~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
+++.|++|||.|+..+++++++++.+++++.+++..+|.|++|.+++++.+||||||||++||||++++|+++|||||||
T Consensus 77 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 77 IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99999999999987766778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHH
Q 004004 750 AVDAHTGTHLFKAR 763 (779)
Q Consensus 750 ALDa~t~~~If~~~ 763 (779)
+||+.+.+.+++..
T Consensus 157 ~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 157 AVDAHVGKHIFENV 170 (237)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHH
Confidence 99999999887654
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.5e-39 Score=338.77 Aligned_cols=167 Identities=26% Similarity=0.360 Sum_probs=155.1
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++|+|+. .+.++|+ ++||+|++||+++|+||+|||||||+++|+|.++|++| +|.++|
T Consensus 6 ~~~~~~~l~~~y~~----~~~~vl~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP----DSPVILD-NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST----TSCEEEE-EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC----CCcceee-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHH
Confidence 46999999999942 1246899 99999999999999999999999999999999999999 999988
Q ss_pred ----eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 ----~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++||+|+|.+|++|++|||.|+.+ .++++.+++++.+++.+.++.+|.|++|.+++++.+||||||||++||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp HHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 2899999999999999999999864 56778899999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++++|+++|||||||+||+.+.+.+.+
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 999999999999999999999998765
No 15
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.8e-39 Score=339.06 Aligned_cols=182 Identities=29% Similarity=0.423 Sum_probs=158.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++|+|+. ....++|+ ++||+|++|++++|+||+|||||||+++|+|.+++ +| +|.++|
T Consensus 16 ~~l~i~~l~~~y~~---~~~~~vl~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G-~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK---QTNHRTLK-SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG-DIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTT---CCSSCSEE-EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE-EEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCC---CCcCceeE-eeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce-EEEECCEEhhhcCHH
Confidence 35999999999975 21246899 99999999999999999999999999999999987 89 999988
Q ss_pred ----eEEEEccccccCCCcHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 ----~iayV~Q~pwI~ngTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++||+|+|.+|+.|++|||.|+.. .+++++.++++.+++.+.++.+|+|.+|.+++++.+||||||||++||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp HHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred HHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 2899999999999999999999753 45678889999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH-HHHhHhcc
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH-QLLFSINH 777 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~-~~~~~~~~ 777 (779)
++++|+|+|||||||+||+++.+.+.+ .+...-+ ..++.|+|
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~-~l~~l~~~~tviivtH 212 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQK-AVEDLRKNRTLIIIAH 212 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHH-HHHHHTTTSEEEEECS
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHH-HHHHhcCCCEEEEEcC
Confidence 999999999999999999999887754 3443321 12344555
No 16
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-39 Score=339.92 Aligned_cols=164 Identities=29% Similarity=0.468 Sum_probs=153.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|++|+|+. +.++|+ ++||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 2 l~~~~l~~~y~~-----~~~vl~-~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYDD-----SEQILR-DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG-EITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSSS-----SSCSEE-EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS-CEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeCC-----CCceEE-EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHH
Confidence 689999999942 256899 99999999999999999999999999999999999999 999987
Q ss_pred --eEEEEccccccCCCcHHHHhccC-C-CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 660 --KKAYVPQSSWIQTGTIRENILFG-K-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 660 --~iayV~Q~pwI~ngTIreNIlfG-~-~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
.++||+|+|.+|++|++|||.|+ . ..++++.+++++.+++.+.++.+|+|++|.+++++.+||||||||++||||+
T Consensus 75 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp TTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 38999999999999999999998 3 3567788999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+++|+++|||||||+||+++.+.+.+
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~ 180 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQK 180 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHH
Confidence 99999999999999999999988765
No 17
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.3e-38 Score=335.09 Aligned_cols=186 Identities=38% Similarity=0.649 Sum_probs=146.6
Q ss_pred HHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHh
Q 004004 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iL 644 (779)
|+.++++.+..+... .........++++|++|.+ .++|+ ++||+|++|++++|+||+|||||||+++|+
T Consensus 17 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~--------~~vl~-~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 17 GFGELFEKAKQNNNN--RKTSNGDDSLSFSNFSLLG--------TPVLK-DINFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp HHHHHHHHCC-------------------------C--------CCSEE-EEEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred HHHHHhccccccccc--ccccCCCceEEEEEEEEcC--------ceEEE-eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 777777655432211 1111223469999999852 35899 999999999999999999999999999999
Q ss_pred ccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 645 GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 645 Ge~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
|.++|++| +|.++|+++||+|+|.+|++|++|||. +..+++.+++++++.+++.+.++.+|++++|.+++++.+||||
T Consensus 86 Gl~~p~~G-~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgG 163 (290)
T 2bbs_A 86 GELEPSEG-KIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163 (290)
T ss_dssp TSSCEEEE-EEECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHH
T ss_pred cCCCCCCc-EEEECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHH
Confidence 99999999 999999999999999999999999999 6555666778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKAR 763 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~ 763 (779)
||||++||||++++|+++|||||||+||+.+.+.+++..
T Consensus 164 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999988753
No 18
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=349.00 Aligned_cols=168 Identities=26% Similarity=0.341 Sum_probs=156.6
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
...|+++|++++|+. .+.++|+ ++||+|++||+++|+|||||||||||++|+|+++ ++| +|.++|
T Consensus 17 ~~~i~~~~l~~~y~~----~~~~~L~-~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G-~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE----GGNAILE-NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-EIQIDGVSWDSITL 89 (390)
T ss_dssp SCCEEEEEEEEESSS----SSCCSEE-EEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE-EEEESSCBTTSSCH
T ss_pred CCeEEEEEEEEEecC----CCeEEee-ceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe-EEEECCEECCcCCh
Confidence 357999999999963 2357899 9999999999999999999999999999999998 899 999988
Q ss_pred -----eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 -----~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++||+|++.+|..|++|||.+.....+++.+++++.++|.+.++..|++++|.++++|.+||||||||++||||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 389999999999999999999766777889999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
+.++|+++|||||||+||+++.+++.+.
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 9999999999999999999999887654
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-37 Score=329.37 Aligned_cols=183 Identities=23% Similarity=0.319 Sum_probs=158.3
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++|+|+. ....++|+ ++||+|++||+++|+||+|||||||+++|+|+++|++| +|.++|
T Consensus 15 ~~l~~~~l~~~y~~---~~~~~vl~-~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 15 GLVKFQDVSFAYPN---HPNVQVLQ-GLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG-KVLLDGEPLVQYDHH 89 (271)
T ss_dssp CCEEEEEEEECCTT---CTTSCCEE-EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHH
T ss_pred ceEEEEEEEEEeCC---CCCceeeE-eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEcccCCHH
Confidence 46999999999964 11256899 99999999999999999999999999999999999999 999988
Q ss_pred ----eEEEEccccccCCCcHHHHhccCCC-CCH-HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 ----~iayV~Q~pwI~ngTIreNIlfG~~-~d~-~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++||+|+|.+|+.|++|||.|+.+ .++ ++..+.++..++.+.++.+|+|+++.+++++.+||||||||++|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 2899999999999999999999864 333 5566777778889999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH---HHHhHhcc
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH---QLLFSINH 777 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~---~~~~~~~~ 777 (779)
|++++|+++|||||||+||+.+.+.+.+ .+....+ ..++.|+|
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQ 215 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECS
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeC
Confidence 9999999999999999999999988765 3444322 23445555
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.6e-35 Score=307.65 Aligned_cols=172 Identities=24% Similarity=0.313 Sum_probs=138.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+.. ....++|+ ++||+|++||.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 2 l~~~~l~~~y~~~--~~~~~~L~-~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMG--EEIIYALK-NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEET--TEEEEEEE-EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCC--CcceeeEE-eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHH
Confidence 7899999999751 11246899 99999999999999999999999999999999999999 999988
Q ss_pred ------eEEEEccccccCCC-cHHHHhccCC------CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ------KKAYVPQSSWIQTG-TIRENILFGK------DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ------~iayV~Q~pwI~ng-TIreNIlfG~------~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++||+|+|.++.. |++|||.++. ..+ .++..++++.++|.+.. ......+||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 147 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLS 147 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSC
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCC
Confidence 29999999999876 9999998741 122 23445555666654322 134568899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||||++||||+.++|+++|||||||+||+.+.+.+++- +..+-++ -++.|+|
T Consensus 148 gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL-LKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHCCEEEEECS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEcC
Confidence 9999999999999999999999999999999999988763 4443332 3455666
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-34 Score=301.36 Aligned_cols=154 Identities=25% Similarity=0.388 Sum_probs=130.0
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.++++|++++|+. .++|+ ++||+|++||.++|+||+|||||||+++|.|.++|++| +|.++|.
T Consensus 6 ~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYGA------IHAIK-GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEECC------eeEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCCHHH
Confidence 4899999999964 46899 99999999999999999999999999999999999999 9999872
Q ss_pred -----EEEEccccccCCC-cHHHHhccCC-C-CCH----HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 661 -----KAYVPQSSWIQTG-TIRENILFGK-D-MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 661 -----iayV~Q~pwI~ng-TIreNIlfG~-~-~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
++||+|+|.++.+ |++||+.++. + .++ ++.+++++.. + |.....+.+..+||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LSgGq~qr 147 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQM 147 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc---------c-cHhhHhcCChhhCCHHHHHH
Confidence 8999999999887 9999999864 1 122 2233333333 2 12233456778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++||||++++|+++|||||||+||+++.+.+.+
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 180 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999999999999999999999999999988775
No 22
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.7e-34 Score=315.59 Aligned_cols=168 Identities=25% Similarity=0.392 Sum_probs=141.4
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|+++|++++|++ .++|+ |+||+|++||+++|+|||||||||||++|.|+.+|++| +|.++|
T Consensus 4 ~l~i~~ls~~y~~------~~~L~-~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------TPVLN-DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG-EISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEECC------EEEEE-eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEECccccccc
Confidence 4899999999964 46899 99999999999999999999999999999999999999 999887
Q ss_pred -----eEEEEccccccCC-CcHHHHhccCCCC-------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 -----~iayV~Q~pwI~n-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++||+|++-+|. -|++|||.||... .+++.+++++.++|.+..+.. ..+||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~ 144 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY-----------PHELSGGQQ 144 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-----------GGGSCHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHH
Confidence 2899999999985 5999999998532 135677788888886544433 468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 727 QRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||++||||+..+|+++|||||||+||+.+.+.+.+... ...++ -++.|+|
T Consensus 145 QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~-~~~~~~g~tvi~vTH 197 (359)
T 3fvq_A 145 QRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI-AALRANGKSAVFVSH 197 (359)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH-HHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHHhCCCEEEEEeC
Confidence 99999999999999999999999999999999876533 33333 3445555
No 23
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2e-34 Score=305.69 Aligned_cols=169 Identities=21% Similarity=0.339 Sum_probs=140.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.|+++|++++|+. ..++|+ |+||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 7 ~l~i~~ls~~y~~-----~~~~L~-~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G-~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYSD-----GTHALK-GINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG-RILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECTT-----SCEEEE-EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEECC-----CCeEEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-EEEECCEECCcccccH
Confidence 5899999999964 245899 99999999999999999999999999999999999999 999988
Q ss_pred -----eEEEEcccc--ccCCCcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 660 -----~iayV~Q~p--wI~ngTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
.++||+|+| .+++.|++|||.|+.. .+ +++.+++++.++|.+..+ ....+|||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq 148 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQ 148 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHH
Confidence 289999998 5789999999988632 22 345677788887754332 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||++||||+..+|+++|||||||+||+.+.+.+++ .+..+-++ .++.|+|
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtH 202 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATH 202 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEec
Confidence 999999999999999999999999999999988775 34444312 2455555
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-34 Score=303.86 Aligned_cols=159 Identities=28% Similarity=0.376 Sum_probs=136.1
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccc
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pw 669 (779)
.++++|++++|+. +.++|+ ++||+|++|+.++|+||+|||||||+++|.|.++|.+| +|.....++||+|+|.
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~-~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~~~i~~v~q~~~ 76 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQ-QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG-KIEVYQSIGFVPQFFS 76 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEE-EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEE-EEEECSCEEEECSCCC
T ss_pred eEEEeeEEEEeCC-----CCeEEE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEeccEEEEcCCCc
Confidence 4899999999962 146899 99999999999999999999999999999999999999 9998888999999998
Q ss_pred cC-CCcHHHHhccCCC--------CC---HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 670 IQ-TGTIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 670 I~-ngTIreNIlfG~~--------~d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
++ +.|++|||.++.. .. +++.+++++..+|.+..+ .+..+||||||||++||||+++
T Consensus 77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHc
Confidence 87 7899999998631 11 345677777777765433 3467899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 738 NSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 738 ~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+|+++|||||||+||+++.+.+.+ .+...
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~-~l~~l 174 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLS-LLIDL 174 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHH-HHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999988775 34433
No 25
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.5e-34 Score=316.19 Aligned_cols=173 Identities=23% Similarity=0.289 Sum_probs=141.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++++|+.. ....++|+ |+||+|++||+++|+||+|||||||+++|.|..+|++| +|.++|
T Consensus 23 ~mi~v~~ls~~y~~~--~~~~~aL~-~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G-~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQG--TRTIQALN-NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECS--SSEEEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCC--CCCeEEEE-eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHH
Confidence 469999999999741 11245899 99999999999999999999999999999999999999 999988
Q ss_pred -------eEEEEccccccCCC-cHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------~iayV~Q~pwI~ng-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++||+|++.++.. |++|||.|+.. .+ +++.+++++.++|.+..+. ...+||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGG 167 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGG 167 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-----------CTTTSCHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHH
Confidence 28999999998765 99999988631 22 3456777888887654333 34689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||++||||+..+|+++||||||||||+.+.+.|++ .+..+-++ -++.|+|
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITH 222 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEec
Confidence 9999999999999999999999999999999999876 34433332 2455555
No 26
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-34 Score=298.21 Aligned_cols=158 Identities=23% Similarity=0.288 Sum_probs=133.2
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++|+ |+||+|++||.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 4 ~l~~~~l~~~y~~------~~~l~-~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIRG------YEILK-GISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG-KVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE-EEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEECC------EeeEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHH
Confidence 4899999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred -------eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++||+|+|.++. .|++||+.++.. .+ +++.+++++.++|.+..+ ....+||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 144 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-----------RKPYELSGG 144 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHH
Confidence 2899999998876 599999987531 11 345666777777654322 345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++||||+.++|+++|||||||+||+++.+.+.+ .+..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l 186 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD-IFLKI 186 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988775 34433
No 27
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-34 Score=317.48 Aligned_cols=168 Identities=26% Similarity=0.377 Sum_probs=141.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.|+++|++++|+. .++|+ ++||+|++||+++|+||||||||||+++|.|+++|++| +|.++|.
T Consensus 3 ~l~~~~l~~~yg~------~~~L~-~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------VVVSK-DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEECC------EEEEe-eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe-EEEECCEECCCCCHHH
Confidence 4899999999964 46899 99999999999999999999999999999999999999 9999883
Q ss_pred --EEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 661 --KAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 661 --iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
++||+|++-+|. -|++|||.||.. .+ +++.+++++.++|.+..+.. -.+||||||||++
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------p~~LSGGqrQRVa 143 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVA 143 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC-----------GGGSCHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhHCCHHHHHHHH
Confidence 899999999986 599999999732 22 34677788888887654443 3589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+..+|+++|||||||+||+++..++.+. ++.+.++ -++.|+|
T Consensus 144 iArAL~~~P~lLLLDEPts~LD~~~~~~l~~~-l~~l~~~~g~tii~vTH 192 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTH 192 (381)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHCCEEEEECS
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHhCCCEEEEEEC
Confidence 99999999999999999999999999988764 4444443 2445555
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.2e-34 Score=301.48 Aligned_cols=168 Identities=25% Similarity=0.331 Sum_probs=141.4
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.++++|++++|+. .++|+ ++||+|++||+++|+||+|||||||+++|+|.++|++| +|.++|.
T Consensus 11 ~l~~~~l~~~~~~------~~vL~-~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 11 LLEASHLHYHVQQ------QALIN-DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG-ECHLLGQNLNSWQPKA 82 (266)
T ss_dssp EEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC-EEEETTEETTTSCHHH
T ss_pred eEEEEeEEEEeCC------eeEEE-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCCHHH
Confidence 5899999999964 57899 99999999999999999999999999999999999999 9999883
Q ss_pred ----EEEEcccccc-CCCcHHHHhccCCC-----CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 661 ----KAYVPQSSWI-QTGTIRENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 661 ----iayV~Q~pwI-~ngTIreNIlfG~~-----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
++|++|++.+ ++.|++||+.++.. .++++.+++++.++|.+..+ ....+||||||||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~ 151 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHH
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHH
Confidence 8999999887 77899999998742 23466778888887754332 234579999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~------~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+.+ +|+++|||||||+||+++.+.+++ .+..+-++ .++.|+|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtH 206 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLH 206 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECS
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEc
Confidence 9999999 999999999999999999998876 34444333 2455566
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-34 Score=292.19 Aligned_cols=152 Identities=25% Similarity=0.432 Sum_probs=132.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------e
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------~ 660 (779)
..++++|++++|+ + ++|+ ++||+|++||+++|+||+|||||||+++|.|.++|++| +|.++| .
T Consensus 9 ~~l~~~~ls~~y~------~-~il~-~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD------K-PVLE-RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPITKVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS------S-EEEE-EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGGGGG
T ss_pred ceEEEEEEEEEeC------C-eEEe-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEhhhhcCc
Confidence 3699999999994 2 6899 99999999999999999999999999999999999999 999998 3
Q ss_pred EEEEccccccCCC-cHHHHhccCC-----CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 661 KAYVPQSSWIQTG-TIRENILFGK-----DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 661 iayV~Q~pwI~ng-TIreNIlfG~-----~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
++||+|+|.++.+ |++|||.++. +.++++.+++++.++|. .. +.+..+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHHH
Confidence 8999999999876 9999998752 22356677777766553 22 45678999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++++|+++|||||||+||+.+.+.+.+
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~ 174 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLK 174 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence 999999999999999999999988765
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-33 Score=298.95 Aligned_cols=170 Identities=22% Similarity=0.324 Sum_probs=141.4
Q ss_pred EEEeeeEEEeccccccCC--CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 591 IDIEAGEYAWDAREENFK--KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~--~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
++++|++++|+. +.. .++|+ ++||+|++||.++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 3 l~~~~l~~~y~~---~~~~~~~vl~-~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 3 IEVVNVSHIFHR---GTPLEKKALE-NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYEIR 77 (266)
T ss_dssp EEEEEEEEEEST---TSTTCEEEEE-EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCHHHHG
T ss_pred EEEEEEEEEecC---CCccccceee-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEECchHHhh
Confidence 789999999962 111 46899 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEcccc--ccCCCcHHHHhccCCC------CCHHHHHHHHHHccch--HHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 -KKAYVPQSS--WIQTGTIRENILFGKD------MRQSFYEEVLEGCALN--QDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 -~iayV~Q~p--wI~ngTIreNIlfG~~------~d~~~y~~vl~ac~L~--~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++||+|+| .+++.|++|||.|+.. ..+++.+++++..+|. +..+..| .+||||||||
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qR 146 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRR 146 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHH
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHH
Confidence 389999997 5788999999998632 1246788999999997 5554433 6899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
++||||+.++|+++|||||||+||+++.+.+.+ .+...-++ .++.++|
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tii~vtH 196 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLR-IVEKWKTLGKTVILISH 196 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEeC
Confidence 999999999999999999999999999988775 34433222 2444555
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-34 Score=299.63 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=139.3
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. .++|+ |+||+|++|+.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 6 ~l~i~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYGG------HEVLK-GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTT
T ss_pred eEEEeeEEEEECC------EEEEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEcccccccc
Confidence 4899999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred ----------------eEEEEccccccCCC-cHHHHhccCC----CCC----HHHHHHHHHHccchHH-HhhccCCCCcc
Q 004004 660 ----------------KKAYVPQSSWIQTG-TIRENILFGK----DMR----QSFYEEVLEGCALNQD-IEMWADGDLSV 713 (779)
Q Consensus 660 ----------------~iayV~Q~pwI~ng-TIreNIlfG~----~~d----~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~ 713 (779)
.++||+|++.++.. |++|||.++. ..+ +++.+++++..+|.+. .+.
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-------- 149 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-------- 149 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS--------
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC--------
Confidence 28999999988876 9999998852 122 3456778888888765 433
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
...+||||||||++||||+.++|+++|||||||+||+++.+.+.+ .+..+-++ .++.|+|
T Consensus 150 ---~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtH 211 (262)
T 1b0u_A 150 ---YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTH 211 (262)
T ss_dssp ---CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECS
T ss_pred ---CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeC
Confidence 346899999999999999999999999999999999999988775 34443222 2344555
No 32
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=8.7e-34 Score=299.04 Aligned_cols=158 Identities=27% Similarity=0.320 Sum_probs=134.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
.|+++|++++|+. .++|+ |+||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|.
T Consensus 24 ~l~i~~l~~~y~~------~~vL~-~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFGS------LEVLK-GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG-EIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEECC------EEEEE-eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCEECCCccccH
Confidence 5999999999964 46899 99999999999999999999999999999999999999 9999872
Q ss_pred ------EEEEccccccCCC-cHHHHhccCC----CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 661 ------KAYVPQSSWIQTG-TIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 661 ------iayV~Q~pwI~ng-TIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
++||+|++.++.. |++|||.|+. ..+ +++.+++++.++|.+..+ ....+|||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq 164 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQ 164 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHH
Confidence 8999999998876 9999998852 222 345667777777754332 3457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||++||||+.++|+++|||||||+||+.+.+.+.+ .+..+
T Consensus 165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l 205 (263)
T 2olj_A 165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS-VMKQL 205 (263)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988765 34443
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7e-34 Score=311.57 Aligned_cols=168 Identities=24% Similarity=0.303 Sum_probs=141.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++|+ ++||+|++||+++|+||+||||||||++|.|+.+|++| +|.++|
T Consensus 3 ~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------VKAVD-GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG-EIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEECC------EEEEe-eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc-EEEECCEECCCCChhh
Confidence 3889999999964 46899 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCCC-------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++||+|++.+|. -|++|||.||... .+++.+++++.++|.+..+..| .+||||||||++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRva 143 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVA 143 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHH
Confidence 3899999999886 5999999997532 1356788888888876555444 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+.++|+++|||||||+||+++.+.+.+. ++.+.++ -++.|+|
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tvi~vTH 192 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAE-IKHLQQELGITSVYVTH 192 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHCCEEEEEES
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcC
Confidence 99999999999999999999999999887654 4444333 2344555
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.3e-34 Score=311.82 Aligned_cols=169 Identities=26% Similarity=0.390 Sum_probs=141.4
Q ss_pred ccEEEeeeEEEe-ccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 589 VAIDIEAGEYAW-DAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw-~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
..++++|++++| ++ .++|+ |+||+|++||+++|+||+||||||||++|.|..+|++| +|.++|
T Consensus 13 ~~l~~~~l~~~y~g~------~~vl~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG------ARSVR-GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG-DVWIGGKRVTDLPP 84 (355)
T ss_dssp EEEEEEEEEECCTTS------TTCEE-EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCG
T ss_pred ceEEEEEEEEEEcCC------CEEEe-eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECCcCCh
Confidence 469999999999 43 46899 99999999999999999999999999999999999999 999988
Q ss_pred ---eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++||+|++.+|. -|++|||.|+.. .+ +++.+++++..+|.+..+..| .+||||||||
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QR 153 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQR 153 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHH
Confidence 3899999999887 599999998632 22 356778888888865544433 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
++||||+..+|+++|||||||+||+.+.+.+.+. ++.+.++ -++.|+|
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tvi~vTH 204 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTF-VRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHH-HHHHHHHHTCEEEEECS
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEECC
Confidence 9999999999999999999999999999887653 4444333 2344555
No 35
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.3e-34 Score=298.30 Aligned_cols=153 Identities=22% Similarity=0.308 Sum_probs=130.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++|+ |+||+|++||.++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 7 ~l~i~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFGE------FKALD-GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEETT------EEEEE-EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEECC------EeeEe-eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHH
Confidence 5899999999964 46899 99999999999999999999999999999999999999 999987
Q ss_pred ----eEEEEccccccCC-CcHHHHhccCCCC----------------C----HHHHHHHHHHccchHHHhhccCCCCccc
Q 004004 660 ----KKAYVPQSSWIQT-GTIRENILFGKDM----------------R----QSFYEEVLEGCALNQDIEMWADGDLSVV 714 (779)
Q Consensus 660 ----~iayV~Q~pwI~n-gTIreNIlfG~~~----------------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (779)
.++||+|++.++. .|++|||.++... + +++.+++++..+|.+ ..
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~ 147 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-----------LY 147 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------GT
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-----------hh
Confidence 2899999998875 7999999886321 1 134455555555543 23
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 715 GE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.....+||||||||++||||+.++|+++|||||||+||+++.+.+.+
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 194 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 45567999999999999999999999999999999999999988775
No 36
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-33 Score=296.19 Aligned_cols=154 Identities=24% Similarity=0.304 Sum_probs=133.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..|+++|++++|+. .++|+ ++||+|++||.++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 14 ~~l~i~~l~~~y~~------~~vl~-~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK------KEILK-GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHE 85 (256)
T ss_dssp CCEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHH
T ss_pred CeEEEEEEEEEECC------EEEEE-eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCccHHH
Confidence 46999999999964 46899 99999999999999999999999999999999999999 999987
Q ss_pred ---eEEEEccccccCCC-cHHHHhccCC---CCC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHH
Q 004004 660 ---KKAYVPQSSWIQTG-TIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (779)
Q Consensus 660 ---~iayV~Q~pwI~ng-TIreNIlfG~---~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQR 728 (779)
.++||+|+|.++.+ |++||+.++. ..+ +++.+++++..+|.+..+ .+..+||||||||
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qR 154 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRK 154 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHH
Confidence 38999999998876 9999998753 122 245677788887765433 3456899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
++||||++++|+++|||||||+||+.+.+.+.+
T Consensus 155 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 187 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187 (256)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCccccCHHHHHHHHH
Confidence 999999999999999999999999999988765
No 37
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=7.3e-34 Score=311.41 Aligned_cols=168 Identities=23% Similarity=0.327 Sum_probs=140.6
Q ss_pred cEEEeeeEEEeccccccCCCc--ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------
Q 004004 590 AIDIEAGEYAWDAREENFKKP--TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~--~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------- 659 (779)
.++++|++++|+. .+ +|+ ++||+|++||+++|+||+||||||||++|.|+.+|++| +|.++|
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALD-NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEE-EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTE
T ss_pred EEEEEeEEEEECC------EeeeeEe-ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECccccc
Confidence 3889999999964 35 899 99999999999999999999999999999999999999 999877
Q ss_pred --------eEEEEccccccCCC-cHHHHhccCCCC---C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 --------KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 --------~iayV~Q~pwI~ng-TIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.++||+|++.+|.. |++|||.||... + +++.+++++..+|.+..+..| .+|||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSG 143 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSG 143 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCH
Confidence 28999999999875 999999997532 2 346778888888866544433 58999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||||++||||+.++|+++|||||||+||+++.+.+.+. ++.+.++ -++.|+|
T Consensus 144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tvi~vTH 199 (353)
T 1oxx_K 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHHHHHHHCCEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 999999999999999999999999999999999887764 4444333 2344555
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.3e-34 Score=312.26 Aligned_cols=168 Identities=27% Similarity=0.335 Sum_probs=139.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|+. .++|+ ++||+|++||+++|+||+||||||||++|.|+.+|++| +|.++|
T Consensus 3 ~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFGN------FTALN-NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG-KIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESSS------SEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEECC------EEEEE-eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHhH
Confidence 3899999999964 46899 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++||+|++.+|. -|++|||.||.. .+ +++.+++++.++|.+..+.. -.+||||||||++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRva 143 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY-----------PWQLSGGQQQRVA 143 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-----------GGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCC-----------hhhCCHHHHHHHH
Confidence 3899999999986 499999998632 22 24567778888776544433 3589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+.++|+++|||||||+||+++.+.+.+. +..+.++ -++.|+|
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tvi~vTH 192 (362)
T 2it1_A 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAE-LKRLQKELGITTVYVTH 192 (362)
T ss_dssp HHHHHTTCCSEEEEESGGGGSCHHHHHHHHHH-HHHHHHHHTCEEEEEES
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHH-HHHHHHhCCCEEEEECC
Confidence 99999999999999999999999999887764 4444333 2344555
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-33 Score=310.56 Aligned_cols=168 Identities=24% Similarity=0.309 Sum_probs=135.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++|+ ++||+|++||+++|+||+||||||||++|.|+++|++| +|.++|
T Consensus 11 ~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFGN------FTAVN-KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEECC------EEEEe-eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCce-EEEECCEECCCCChhh
Confidence 4899999999964 46899 99999999999999999999999999999999999999 999988
Q ss_pred -eEEEEccccccCC-CcHHHHhccCCCC---C----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHH
Q 004004 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (779)
Q Consensus 660 -~iayV~Q~pwI~n-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIa 730 (779)
.++||+|++.+|. -|++|||.||... + +++.+++++.++|.+..+..| .+||||||||++
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRva 151 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVA 151 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHH
Confidence 3899999999885 5999999998542 2 245777888888865544433 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 731 LARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||+.++|+++|||||||+||+++.+.+.+. ++.+.++ -++.|+|
T Consensus 152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tvi~vTH 200 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTH 200 (372)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEES
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhCCCEEEEEeC
Confidence 99999999999999999999999999887764 4444333 2344555
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.7e-34 Score=295.31 Aligned_cols=164 Identities=24% Similarity=0.364 Sum_probs=135.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|+. .|+ ++||++++ |.++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 2 l~~~~l~~~y~~--------~l~-~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLGN--------FRL-NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEETT--------EEE-EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeCC--------EEe-eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCchhhC
Confidence 678999999952 388 99999999 99999999999999999999999999999 999988
Q ss_pred eEEEEccccccCCC-cHHHHhccCCCC-----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 660 KKAYVPQSSWIQTG-TIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 660 ~iayV~Q~pwI~ng-TIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
.++||+|++.++.. |++||+.|+... ++++.+++++..+|.+..+ ....+||||||||++|||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAr 139 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALAR 139 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHH
Confidence 38999999999876 999999997542 1345666777776654332 234689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 734 Aly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|+.++|+++|||||||+||+++.+.+.+ .+...-++ .++.++|
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLME-ELRFVQREFDVPILHVTH 185 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHH-HHHHHHHHHTCCEEEEES
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 9999999999999999999999988775 34443332 2344555
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8e-34 Score=310.11 Aligned_cols=166 Identities=26% Similarity=0.407 Sum_probs=139.6
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
++++|++++|++ . +++ ++||+|++||+++|+||+||||||||++|.|..+|++| +|.++|
T Consensus 2 l~~~~l~~~y~~------~-~l~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWKN------F-SLD-NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECSS------C-EEE-EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEECC------E-EEe-eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCEECCCCchhhC
Confidence 689999999954 4 899 99999999999999999999999999999999999999 999988
Q ss_pred eEEEEccccccCCC-cHHHHhccCCC----CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH
Q 004004 660 KKAYVPQSSWIQTG-TIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (779)
Q Consensus 660 ~iayV~Q~pwI~ng-TIreNIlfG~~----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA 734 (779)
.++||+|++.+|.. |++|||.||.. ..+++.+++++..+|.+..+.. ..+||||||||++||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 38999999999875 99999998632 1236788888888886544433 35899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 735 ly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
+..+|+++|||||||+||+++.+.+.+. ++.+.++ -++.|+|
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~-l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREM-LSVLHKKNKLTVLHITH 186 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHH-HHHHHHHTTCEEEEEES
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 9999999999999999999999987754 4444332 2344555
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-33 Score=300.68 Aligned_cols=159 Identities=24% Similarity=0.314 Sum_probs=133.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------- 659 (779)
..++++|++++|+. .++|+ |+||+|++||+++|+||+|||||||+++|.|.++|++| +|.++|
T Consensus 20 ~~l~~~~l~~~y~~------~~vL~-~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG------KTILK-KISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG-TVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTBCCC---CC
T ss_pred ceEEEEeEEEEECC------EEEEE-eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe-EEEECCEEcccccCC
Confidence 35999999999964 46899 99999999999999999999999999999999999999 999987
Q ss_pred ------eEEEEcccccc-CCC--cHHHHhccCCC--------CC---HHHHHHHHHHccchHHHhhccCCCCccccCCCC
Q 004004 660 ------KKAYVPQSSWI-QTG--TIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 660 ------~iayV~Q~pwI-~ng--TIreNIlfG~~--------~d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
.++||+|++.+ ++. |++|||.++.. .+ +++.+++++..+|.+.. ..+..
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~ 160 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIG 160 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChh
Confidence 28999999875 554 99999998641 12 23456677777765432 23456
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
+||||||||++||||+.++|+++|||||||+||+.+.+.+.+ .+..+
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l 207 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS-ILDSL 207 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHH
Confidence 899999999999999999999999999999999999988775 34443
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-33 Score=296.76 Aligned_cols=168 Identities=21% Similarity=0.362 Sum_probs=138.5
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------e
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------K 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------~ 660 (779)
++++|++++|+.. +...++|+ ++||+|+ |++++|+||+|||||||+++|.|.+ |++| +|.++| .
T Consensus 2 l~~~~l~~~y~~~--~~~~~il~-~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G-~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGK--GYERFSLE-NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG-NIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEE--TTEEEEEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEE-EEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCC--CccceeEE-eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCc-EEEECCEECcchHHhhh
Confidence 6899999999630 01146899 9999999 9999999999999999999999999 9999 999988 5
Q ss_pred EE-EEccccccCCCcHHHHhccCC---CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 661 KA-YVPQSSWIQTGTIRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 661 ia-yV~Q~pwI~ngTIreNIlfG~---~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
++ ||+|+|.+ +.|++||+.++. ..++++.+++++..+|.+ .....+..+||||||||++||||++
T Consensus 76 i~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 76 YSTNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EEECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 89 99999999 999999998864 345677788888777751 2234556799999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
++|+++|||||||+||+++.+.+.+. +...-+ .++.++|
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~-L~~~~~-tviivtH 183 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRY-IKEYGK-EGILVTH 183 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHH-HHHSCS-EEEEEES
T ss_pred hCCCEEEEECCccccCHHHHHHHHHH-HHHhcC-cEEEEEc
Confidence 99999999999999999999987653 333222 3444555
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3e-33 Score=308.44 Aligned_cols=168 Identities=24% Similarity=0.317 Sum_probs=139.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g---------- 659 (779)
.++++|++++|++ .++|+ ++||+|++||+++|+||+||||||||++|.|+.+|++| +|.++|
T Consensus 3 ~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFGE------VTAVR-EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEECC------EEEEe-eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc-EEEECCEECccccccc
Confidence 3889999999964 46899 99999999999999999999999999999999999999 999876
Q ss_pred -------eEEEEccccccCC-CcHHHHhccCCC---CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH
Q 004004 660 -------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (779)
Q Consensus 660 -------~iayV~Q~pwI~n-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG 724 (779)
.++||+|++.+|. .|++|||.||.. .+ +++.+++++..+|.+..+..| .+||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGG 143 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGG 143 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHH
Confidence 2899999999875 699999998632 22 245677888888765444333 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||++||||+..+|+++|||||||+||+++.+.+.+. ++.+.++ -++.|+|
T Consensus 144 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tvi~vTH 198 (372)
T 1g29_1 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKKLQRQLGVTTIYVTH 198 (372)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEECC
Confidence 99999999999999999999999999999999887653 4444433 2444555
No 45
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.98 E-value=2.7e-32 Score=285.49 Aligned_cols=148 Identities=22% Similarity=0.383 Sum_probs=130.8
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe---------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------- 660 (779)
-++++|++++ ++|+ ++||+|++||.++|+||+|||||||+++|.|.++|. | +|.++|.
T Consensus 4 ~l~~~~l~~~----------~vl~-~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G-~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES----------TRLG-PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-G-SIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET----------TTEE-EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-E-EEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE----------EEEe-eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-e-EEEECCEECCcCCHHH
Confidence 3789999874 4689 999999999999999999999999999999999999 9 9999883
Q ss_pred ----EEEEccccccCCC-cHHHHhccCCC--CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 661 ----KAYVPQSSWIQTG-TIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 661 ----iayV~Q~pwI~ng-TIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
++||+|++.++.+ |++||+.++.. .++++.+++++..+|.+..+ .+..+||||||||++|||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAr 139 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAA 139 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHH
Confidence 8999999998765 99999998753 24677888898888865432 456789999999999999
Q ss_pred HHccCCC-------EEEEeCCCCCcCHHHHHHHHH
Q 004004 734 AVYSNSD-------VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 734 Aly~~ad-------I~LLDDp~SALDa~t~~~If~ 761 (779)
|++++|+ ++|||||||+||+.+.+.+.+
T Consensus 140 aL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~ 174 (249)
T 2qi9_C 140 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 174 (249)
T ss_dssp HHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHH
T ss_pred HHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHH
Confidence 9999999 999999999999999988775
No 46
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.98 E-value=1.6e-32 Score=287.70 Aligned_cols=169 Identities=19% Similarity=0.187 Sum_probs=128.7
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc--ccCCCCCeEEEcCe-------
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------- 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe--~~~~~G~~I~i~g~------- 660 (779)
.++++|++++|+. .++|+ ++||+|++||.++|+||+|||||||+++|+|. ++|++| +|.++|.
T Consensus 3 ~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASIDG------ETILK-GVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG-EILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEECTTSCH
T ss_pred eEEEEeEEEEECC------EEEEe-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEECCCCCH
Confidence 3789999999964 46899 99999999999999999999999999999998 889999 9999872
Q ss_pred -------EEEEccccccCCC-cHHHHhccCCC------CC----HHHHHHHHHHccchHHHhhccCCCCccccCCCCC-C
Q 004004 661 -------KAYVPQSSWIQTG-TIRENILFGKD------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN-L 721 (779)
Q Consensus 661 -------iayV~Q~pwI~ng-TIreNIlfG~~------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~n-L 721 (779)
++||+|+|.++.+ |++||+.++.. .+ .++.+++++..+|..++. +.. -.+ |
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~~----~~~~L 144 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL------SRY----LNEGF 144 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG------GSB----TTCC-
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh------cCC----cccCC
Confidence 7899999998875 99999987421 11 234556666666632221 111 123 9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
|||||||++||||+.++|+++|||||||+||+++.+.+.+ .+...-++ .++.|+|
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITH 201 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEec
Confidence 9999999999999999999999999999999999998875 34433221 2445555
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=1.2e-31 Score=283.78 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=126.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc--ccCCCCCeEEEcCe------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------ 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe--~~~~~G~~I~i~g~------ 660 (779)
..++++|++++|++ .++|+ |+||+|++||+++|+||+|||||||+++|+|. ++|++| +|.++|.
T Consensus 19 ~~l~~~~l~~~y~~------~~vl~-~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSVED------KAILR-GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEETT------EEEEE-EEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEEGGGSC
T ss_pred ceEEEEeEEEEECC------EEEEE-eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCcCC
Confidence 35999999999954 46899 99999999999999999999999999999998 578999 9999882
Q ss_pred --------EEEEccccccCCC-cHHHHhccCC---------C-CCH----HHHHHHHHHccchHHHhhccCCCCccccCC
Q 004004 661 --------KAYVPQSSWIQTG-TIRENILFGK---------D-MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (779)
Q Consensus 661 --------iayV~Q~pwI~ng-TIreNIlfG~---------~-~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~ 717 (779)
++||+|+|.++.+ |++||+.++. + .++ ++.+++++..+|.+ ...++
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 159 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE-----------DLLTR 159 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-----------TTTTS
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-----------hHhcC
Confidence 8999999988765 8999996531 1 122 23445555555532 22233
Q ss_pred CC--CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 718 GI--NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 718 G~--nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
-. +||||||||++||||++++|+++|||||||+||+.+.+.+.+
T Consensus 160 ~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~ 205 (267)
T 2zu0_C 160 SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 205 (267)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 32 599999999999999999999999999999999999998775
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.95 E-value=3.5e-32 Score=291.62 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=158.9
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCccEEEeeeEEEecccc
Q 004004 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDARE 604 (779)
Q Consensus 525 ~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sFsw~~~~ 604 (779)
...+-+++.+++.+.+. ..|+..+...+..+.++.++.+||.++++.++...... .+.......|+++|++|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~i~~~~vs~~y~--- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE-GSWKSILTFFNYQNIELITF--- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS-CCTHHHHHHHHHTTCCHHHH---
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CcccccCCeEEEEEEEEEcC---
Confidence 34555677777777666 48999999999999999999999999998654322111 01011113488999999995
Q ss_pred ccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHH-HhccCC
Q 004004 605 ENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRE-NILFGK 683 (779)
Q Consensus 605 ~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIre-NIlfG~ 683 (779)
.++|+ ++||+|++|++++|+||+|||||||+++|+|++ +| +| ++|++|+|++|++|++| ||.|+.
T Consensus 113 ----~~vL~-~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G-~I-----~~~v~q~~~lf~~ti~~~ni~~~~ 178 (305)
T 2v9p_A 113 ----INALK-LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GG-SV-----LSFANHKSHFWLASLADTRAALVD 178 (305)
T ss_dssp ----HHHHH-HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TC-EE-----ECGGGTTSGGGGGGGTTCSCEEEE
T ss_pred ----hhhhc-cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---Cc-eE-----EEEecCccccccccHHHHhhccCc
Confidence 25899 999999999999999999999999999999999 89 87 57899999999999998 999985
Q ss_pred CCCHHHHHHHHHHccchHHHhh-ccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 684 DMRQSFYEEVLEGCALNQDIEM-WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 684 ~~d~~~y~~vl~ac~L~~di~~-Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
+.++ ++++.++. ||+|++ |.+|||||||| |||++++|+|+| ||+||++++++|.
T Consensus 179 ~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 179 DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 4432 23456676 888887 88999999999 999999999999 9999999998874
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=3.4e-27 Score=272.26 Aligned_cols=168 Identities=21% Similarity=0.329 Sum_probs=134.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-eEEEEccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQS 667 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-~iayV~Q~ 667 (779)
..++++|++.+|++ ..+. +.|++|++||+++|+||+|||||||+++|.|.++|++| +|.+++ .++|++|+
T Consensus 268 ~~l~~~~l~~~~~~-------~~l~-~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~~~~i~~~~q~ 338 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-------FQLV-VDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEG-SVTPEKQILSYKPQR 338 (538)
T ss_dssp EEEEECCEEEEETT-------EEEE-ECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBC-CEESSCCCEEEECSS
T ss_pred ceEEEcceEEEECC-------EEEE-eccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCeeeEeechh
Confidence 46889999998854 3577 78999999999999999999999999999999999999 998877 59999999
Q ss_pred ccc-CCCcHHHHhccCCC----CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 004004 668 SWI-QTGTIRENILFGKD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (779)
Q Consensus 668 pwI-~ngTIreNIlfG~~----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~ 742 (779)
+.. +..|++||+.+... ...++.+++++..+|.+.. .....+||||||||++||||+.++|+++
T Consensus 339 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRv~iAraL~~~p~lL 407 (538)
T 3ozx_A 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-----------ESNVNDLSGGELQKLYIAATLAKEADLY 407 (538)
T ss_dssp CCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-----------TSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred cccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 864 58999999976321 2234456666666665322 2345689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 743 IFDDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 743 LLDDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
|||||||+||+.+...+.+ .+..+.++ .++.|+|
T Consensus 408 lLDEPT~gLD~~~~~~i~~-~l~~l~~~~g~tvi~vsH 444 (538)
T 3ozx_A 408 VLDQPSSYLDVEERYIVAK-AIKRVTRERKAVTFIIDH 444 (538)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHHTTCEEEEECS
T ss_pred EEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeC
Confidence 9999999999999988765 34444332 2345555
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=3.7e-27 Score=275.42 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=130.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..++++|++++|++ ..++ +++|+|++||.++|+||+|||||||+++|.|.++|.+| +|.+...++|++|++
T Consensus 356 ~~l~~~~l~~~~~~-------~~l~-~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~~~i~~v~Q~~ 426 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS-------FKLE-VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KVEWDLTVAYKPQYI 426 (607)
T ss_dssp EEEEECCEEEECSS-------CEEE-ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBS-CCCCCCCEEEECSSC
T ss_pred eEEEEeceEEEecc-------eEEE-ecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEEeeEEEEEecCc
Confidence 46899999999853 3578 89999999999999999999999999999999999999 998888899999998
Q ss_pred cc-CCCcHHHHhccC-C-CC-CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 669 WI-QTGTIRENILFG-K-DM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 669 wI-~ngTIreNIlfG-~-~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
.. ++.|++||+.+. . .+ ++++.+++++..++.+.. ...-.+||||||||++||||+.++|++|||
T Consensus 427 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~QRv~iAraL~~~p~lLlL 495 (607)
T 3bk7_A 427 KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-----------DRNVEDLSGGELQRVAIAATLLRDADIYLL 495 (607)
T ss_dssp CCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-----------TSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 65 678999999764 1 11 234456666666654322 233468999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhHH
Q 004004 745 DDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 745 DDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++||..+...+.+ .+..+
T Consensus 496 DEPt~~LD~~~~~~l~~-~l~~l 517 (607)
T 3bk7_A 496 DEPSAYLDVEQRLAVSR-AIRHL 517 (607)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHH
T ss_pred eCCccCCCHHHHHHHHH-HHHHH
Confidence 99999999999988765 34443
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=4.1e-27 Score=272.14 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=129.4
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..++++|+++.|++ ..++ +++|+|++||+++|+||+|||||||+++|.|..+|.+| +|.+...++||+|++
T Consensus 286 ~~l~~~~l~~~~~~-------~~l~-~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-------FRLE-VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KIEWDLTVAYKPQYI 356 (538)
T ss_dssp EEEEECCEEEEETT-------EEEE-ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBC-CCCCCCCEEEECSSC
T ss_pred eEEEEeeEEEEECC-------EEEE-eCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECceEEEEecCC
Confidence 46899999999853 3578 89999999999999999999999999999999999999 898888899999998
Q ss_pred cc-CCCcHHHHhccC-C-C-CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 669 WI-QTGTIRENILFG-K-D-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 669 wI-~ngTIreNIlfG-~-~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
.. ++.|++||+... . . -++++.+++++..++.+. ......+||||||||++||||+.++|+++||
T Consensus 357 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL 425 (538)
T 1yqt_A 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-----------YDREVNELSGGELQRVAIAATLLRDADIYLL 425 (538)
T ss_dssp CCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred cCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 76 678999998753 1 1 123444555555555322 2344568999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhHH
Q 004004 745 DDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 745 DDp~SALDa~t~~~If~~~i~g~ 767 (779)
||||++||..+...|.+ .+..+
T Consensus 426 DEPt~~LD~~~~~~i~~-~l~~l 447 (538)
T 1yqt_A 426 DEPSAYLDVEQRLAVSR-AIRHL 447 (538)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHH
T ss_pred eCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999988775 34444
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=3.6e-27 Score=284.77 Aligned_cols=172 Identities=26% Similarity=0.372 Sum_probs=127.7
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--eEEEEcc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--~iayV~Q 666 (779)
..++++|++|+|+. .+.++|+ |+||+|++|++++|+||+|||||||+++|.|+++|++| +|.++| .++|++|
T Consensus 670 ~mL~v~nLs~~Y~g----~~~~iL~-dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG-~I~~~~~~~I~yv~Q 743 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG----TSKPQIT-DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG-EVYTHENCRIAYIKQ 743 (986)
T ss_dssp EEEEEEEEEECCTT----CSSCSEE-EEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE-EEEECTTCCEEEECH
T ss_pred ceEEEEeeEEEeCC----CCceeee-ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEEcCccceEeecc
Confidence 35899999999964 1357899 99999999999999999999999999999999999999 999987 6999999
Q ss_pred cccc-----CCCcHHHHh--------------------------------------------------------------
Q 004004 667 SSWI-----QTGTIRENI-------------------------------------------------------------- 679 (779)
Q Consensus 667 ~pwI-----~ngTIreNI-------------------------------------------------------------- 679 (779)
++.. .+.|+++||
T Consensus 744 ~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv 823 (986)
T 2iw3_A 744 HAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLL 823 (986)
T ss_dssp HHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred chhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhh
Confidence 8731 234555544
Q ss_pred ----ccCCC------------------------------------------CCHHHHHHHHHHccchHHHhhccCCCCcc
Q 004004 680 ----LFGKD------------------------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 680 ----lfG~~------------------------------------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
.++.+ ..+++.+++++..+|.+++.
T Consensus 824 ~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~--------- 894 (986)
T 2iw3_A 824 GENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV--------- 894 (986)
T ss_dssp EESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH---------
T ss_pred hhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh---------
Confidence 33211 01223334444444433220
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
...+..+||||||||++||||+.++|+++||||||++||..+...+.+. +... ...++.|+|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~-L~~~-g~tVIiISH 956 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA-LKEF-EGGVIIITH 956 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHH-HHSC-SSEEEEECS
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHh-CCEEEEEEC
Confidence 1234578999999999999999999999999999999999998876653 3221 224555555
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=7.3e-26 Score=264.46 Aligned_cols=166 Identities=23% Similarity=0.318 Sum_probs=129.7
Q ss_pred cEEE--------eeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE------
Q 004004 590 AIDI--------EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI------ 655 (779)
Q Consensus 590 ~I~~--------~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I------ 655 (779)
.|++ +|++++|+. . ..+++ ++| +|++||.++|+||+|||||||+++|.|+++|++| ++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~---~--~~~l~-~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G-~~~~~~~~ 154 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV---N--AFVLY-RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC-EDNDSWDN 154 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST---T--CCEEE-CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT-TTCCCHHH
T ss_pred eEEEecCCccccCCeEEEECC---C--CeeeC-CCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCC-ccccccch
Confidence 4788 899999964 1 24788 999 9999999999999999999999999999999999 65
Q ss_pred ---EEcC---------------eEEEEcccc----ccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCcc
Q 004004 656 ---KVHG---------------KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSV 713 (779)
Q Consensus 656 ---~i~g---------------~iayV~Q~p----wI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 713 (779)
.++| .+++++|.. ..+.+|++||+.... +.++.+++++..+|.+..+.
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~-------- 224 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR-------- 224 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGS--------
T ss_pred hhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCC--------
Confidence 2333 367888863 445679999997532 23567888888888654332
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
.-.+||||||||++||||+.++|++||||||||+||+.+...+++ .+..+.++ .++.|+|
T Consensus 225 ---~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsH 286 (607)
T 3bk7_A 225 ---ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEH 286 (607)
T ss_dssp ---BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECS
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEec
Confidence 235799999999999999999999999999999999999988765 34443332 2344445
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.2e-25 Score=260.09 Aligned_cols=165 Identities=20% Similarity=0.301 Sum_probs=128.9
Q ss_pred eeeEEEeccccccCCCcccccCCcEEeeCC-----cEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKG-----SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 594 ~n~sFsw~~~~~~~~~~~L~~~inl~I~~G-----~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
++.+|+|+. ....++ +++|++++| |+++|+||+|||||||+++|.|+.+|++| +..-.-.++|++|++
T Consensus 350 ~~~~~~y~~-----~~~~l~-~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G-~~~~~~~i~~~~q~~ 422 (608)
T 3j16_B 350 ASRAFSYPS-----LKKTQG-DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG-QDIPKLNVSMKPQKI 422 (608)
T ss_dssp SSSCCEECC-----EEEECS-SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBC-CCCCSCCEEEECSSC
T ss_pred cceeEEecC-----cccccC-ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCC-cCccCCcEEEecccc
Confidence 677888864 235688 999999988 78999999999999999999999999999 643344699999996
Q ss_pred c-cCCCcHHHHhccC---CCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 004004 669 W-IQTGTIRENILFG---KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (779)
Q Consensus 669 w-I~ngTIreNIlfG---~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LL 744 (779)
. .+++|++||+... ...+++..+++++..+|.+.. ...-.+||||||||++||||+.++|++|||
T Consensus 423 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGqkQRv~iAraL~~~p~lLlL 491 (608)
T 3j16_B 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----------DQEVQHLSGGELQRVAIVLALGIPADIYLI 491 (608)
T ss_dssp CCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-----------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred cccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 5 4788999998642 223556667777777765322 233468999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhHHHHH---HHhHhcc
Q 004004 745 DDPFSAVDAHTGTHLFKARTFSLFHQ---LLFSINH 777 (779)
Q Consensus 745 DDp~SALDa~t~~~If~~~i~g~L~~---~~~~~~~ 777 (779)
||||++||+.+...+.+ .+..+.++ -++.|+|
T Consensus 492 DEPT~gLD~~~~~~i~~-ll~~l~~~~g~tviivtH 526 (608)
T 3j16_B 492 DEPSAYLDSEQRIICSK-VIRRFILHNKKTAFIVEH 526 (608)
T ss_dssp CCTTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEECS
T ss_pred ECCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeC
Confidence 99999999999988765 34444322 2445555
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=2.5e-25 Score=257.17 Aligned_cols=155 Identities=23% Similarity=0.287 Sum_probs=121.5
Q ss_pred EEE-eeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE---------EEcC-
Q 004004 591 IDI-EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI---------KVHG- 659 (779)
Q Consensus 591 I~~-~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I---------~i~g- 659 (779)
.++ +|++++|+. ..++++ ++| +|++||+++|+||+|||||||+++|.|+++|.+| ++ .++|
T Consensus 21 ~~~~~~ls~~yg~-----~~~~l~-~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G-~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-----NAFVLY-RLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC-GDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST-----TCCEEE-CCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT-TTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC-----cccccc-CcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-ccCcchhhhHHhhCCc
Confidence 455 589999964 125788 999 9999999999999999999999999999999999 64 2333
Q ss_pred --------------eEEEEccccc----cCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 660 --------------KKAYVPQSSW----IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 660 --------------~iayV~Q~pw----I~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
.+++++|... .+.+|++||+.... +.++.+++++..+|.++.+ ..-.+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-----------~~~~~L 159 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLE-----------REIQHL 159 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-----------SBGGGC
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-----------CChhhC
Confidence 3678888654 34469999986422 2356778888888754332 223579
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||+.++|+++|||||||+||+++.+.+++ .+..+
T Consensus 160 SgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~-~L~~l 204 (538)
T 1yqt_A 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIRRL 204 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988765 34443
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=1.8e-23 Score=252.56 Aligned_cols=151 Identities=22% Similarity=0.353 Sum_probs=119.8
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc-cccCCCCCeEEEcCeEEEEccc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHGKKAYVPQS 667 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG-e~~~~~G~~I~i~g~iayV~Q~ 667 (779)
..+...|++++|++ .++|+ ++||+|++|++++|+||+|||||||+++|.| .+ .|....-..+++|++|+
T Consensus 434 ~~L~~~~ls~~yg~------~~iL~-~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~q~ 503 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA------KILLN-KTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEHD 503 (986)
T ss_dssp CEEEEEEEEEEETT------EEEEE-EEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETTCC
T ss_pred ceeEEeeEEEEECC------EEeEe-cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEccc
Confidence 35777799999964 46899 9999999999999999999999999999994 33 22000001247899998
Q ss_pred c--ccCCCcHHHHhccCC-CCCHHHHHHHHHHccchH-HHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 004004 668 S--WIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (779)
Q Consensus 668 p--wI~ngTIreNIlfG~-~~d~~~y~~vl~ac~L~~-di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~L 743 (779)
+ ...+.|++||+.+.. .. +++.+++++..++.+ ..+. .-.+||||||||++||||+.++|+|+|
T Consensus 504 ~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 504 IDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp CCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred ccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5 355679999998621 12 678888999999854 3332 235799999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHH
Q 004004 744 FDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 744 LDDp~SALDa~t~~~If~ 761 (779)
||||||+||+.+.+.+.+
T Consensus 572 LDEPTs~LD~~~~~~l~~ 589 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVN 589 (986)
T ss_dssp EESTTTTCCHHHHHHHHH
T ss_pred EECCccCCCHHHHHHHHH
Confidence 999999999999988765
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=9.5e-24 Score=243.55 Aligned_cols=145 Identities=27% Similarity=0.318 Sum_probs=114.1
Q ss_pred eeEEEeccccccCCCcccccCCcEEe-eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE-----------EEcC---
Q 004004 595 AGEYAWDAREENFKKPTIKLTDKMKI-MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------KVHG--- 659 (779)
Q Consensus 595 n~sFsw~~~~~~~~~~~L~~~inl~I-~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I-----------~i~g--- 659 (779)
+.+..|.. + .+.|. .|.+ ++||.++|+||+|||||||+++|.|.++|++| ++ .++|
T Consensus 4 ~~~~~~~~---~--~f~l~---~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G-~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKV---N--GFKLF---GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG-DPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESST---T--SCEEE---CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT-CTTSCCCHHHHHHHHTTSTT
T ss_pred CCceecCC---C--ceeec---CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-ccccccchhhHHhhcCCeeH
Confidence 45667764 2 33343 3433 48999999999999999999999999999999 77 3333
Q ss_pred ----------------eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCCh
Q 004004 660 ----------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (779)
Q Consensus 660 ----------------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSG 723 (779)
.+.|++|.+.++.+|+++++.... ++++.+++++.+++..+.+. .-.+|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~-----------~~~~LSg 141 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNK-----------DANILSG 141 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTS-----------BGGGCCH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcC-----------ChhhCCH
Confidence 134667778888999999876432 24567889999988654322 2357999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 724 GQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||||++||||++++|+|||||||||+||+++...+++
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~ 179 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999988875
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-23 Score=244.52 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=115.5
Q ss_pred eeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-----------EcCe---
Q 004004 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHGK--- 660 (779)
Q Consensus 595 n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-----------i~g~--- 660 (779)
|++++|.. ....++ +++ .+++||.++|+||+|||||||+++|.|+++|++| +|. +.|.
T Consensus 82 ~~~~~Y~~-----~~~~l~-~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G-~i~~~~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSA-----NSFKLH-RLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG-RFDDPPEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECST-----TSCEEE-CCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT-TTCCSSCHHHHHHHTTTSTHH
T ss_pred CeEEEECC-----Cceeec-CCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-eEecccchhhhhheecChhhh
Confidence 46788864 234566 655 6899999999999999999999999999999999 772 2231
Q ss_pred ------------EEEEccc----cccCC---CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCC
Q 004004 661 ------------KAYVPQS----SWIQT---GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (779)
Q Consensus 661 ------------iayV~Q~----pwI~n---gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nL 721 (779)
..+.+|. |.... .++.+++....+.++++.+++++..+|.++.+. .-.+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 222 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-----------DIEKL 222 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS-----------CTTTC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCC-----------ChHHC
Confidence 1223332 11111 266777655555566888999999988765543 23589
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHH
Q 004004 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSL 767 (779)
Q Consensus 722 SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~ 767 (779)
|||||||++||||+.++|++||||||||+||+++...+++ .+..+
T Consensus 223 SgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~-~l~~l 267 (608)
T 3j16_B 223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ-IIRSL 267 (608)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHGG
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988765 34433
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=2.4e-23 Score=247.35 Aligned_cols=147 Identities=22% Similarity=0.273 Sum_probs=87.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHH---------------------HHHhccccCCCC------CeEEEcC--
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLL---------------------SSILGEIPRISG------AAIKVHG-- 659 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL---------------------~~iLGe~~~~~G------~~I~i~g-- 659 (779)
..+|+ |+||+|++||+++|+||+|||||||+ +.+.|...|..| ..+.++|
T Consensus 31 ~~~L~-~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 31 AHNLK-NIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp STTCC-SEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred cccee-ccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799 99999999999999999999999998 777777777744 0444444
Q ss_pred -------eEEEEcccccc--------------------CCCcHHHHhccCCCCC--HH-------HHHHHHHHccchHHH
Q 004004 660 -------KKAYVPQSSWI--------------------QTGTIRENILFGKDMR--QS-------FYEEVLEGCALNQDI 703 (779)
Q Consensus 660 -------~iayV~Q~pwI--------------------~ngTIreNIlfG~~~d--~~-------~y~~vl~ac~L~~di 703 (779)
.++||+|.+-+ ..-|++||+.+..... +. ..+++.+..+ .+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l 186 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---FL 186 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHH---HH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH---HH
Confidence 24566665443 2458999998753211 10 0111111111 12
Q ss_pred hhccCCCCcc-ccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHHHHHHHH
Q 004004 704 EMWADGDLSV-VGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 704 ~~Lp~Gd~T~-IGE~G~nLSGGQKQRIaLARAly~~ad--I~LLDDp~SALDa~t~~~If~ 761 (779)
+.+ |.... ......+||||||||++||||+.++|+ ++|||||||+||+++.+.+++
T Consensus 187 ~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~ 245 (670)
T 3ux8_A 187 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA 245 (670)
T ss_dssp HHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH
Confidence 222 22111 234456899999999999999999998 999999999999999998875
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=1.2e-21 Score=232.70 Aligned_cols=95 Identities=24% Similarity=0.395 Sum_probs=64.1
Q ss_pred CCcHHHHhccCCCCCH-HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCC---EEEEeCC
Q 004004 672 TGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDP 747 (779)
Q Consensus 672 ngTIreNIlfG~~~d~-~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ad---I~LLDDp 747 (779)
+-|++||+.|.....+ ++..+.++..+|. ....+....+||||||||++||||+.++|+ ++|||||
T Consensus 504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEP 573 (670)
T 3ux8_A 504 DMTVEDALDFFASIPKIKRKLETLYDVGLG----------YMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP 573 (670)
T ss_dssp TSBHHHHHHHTTTCHHHHHHHHHHHHTTCT----------TSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEEST
T ss_pred hCCHHHHHHHHHHhhhHHHHHHHHHHcCCc----------hhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCC
Confidence 4588888877654321 2222333333221 123456778999999999999999998874 9999999
Q ss_pred CCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 748 FSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 748 ~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
||+||+.+.+.|.+- +..+-++ -++.|+|
T Consensus 574 t~~LD~~~~~~i~~~-l~~l~~~g~tvi~vtH 604 (670)
T 3ux8_A 574 TTGLHVDDIARLLDV-LHRLVDNGDTVLVIEH 604 (670)
T ss_dssp TTTCCHHHHHHHHHH-HHHHHHTTCEEEEECC
T ss_pred CCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeC
Confidence 999999999988763 3333221 2445555
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.8e-24 Score=239.67 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=103.8
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC-CeEEEcC----eEEEEccccccC----CCcHHHHhccCCCC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-AAIKVHG----KKAYVPQSSWIQ----TGTIRENILFGKDM 685 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G-~~I~i~g----~iayV~Q~pwI~----ngTIreNIlfG~~~ 685 (779)
++||++++|++++|+||+|||||||+++|+|.++|.+| .-|.++| .++|+||++-++ ..|++||+ ||...
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccc
Confidence 57899999999999999999999999999999999988 4388876 589999998433 36999999 76542
Q ss_pred -----CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-CCCCcCH
Q 004004 686 -----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA--VYSNSDV----YIFDD-PFSAVDA 753 (779)
Q Consensus 686 -----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA--ly~~adI----~LLDD-p~SALDa 753 (779)
++++..++++.. |..... + ..+||||||||++|||| +..+|++ +|||| |||+||+
T Consensus 209 ~~~~~~~~~~~~ll~~~-----------gl~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~ 275 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNF-----------GLERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE 275 (460)
T ss_dssp BSSCCSSCCBCCEECCC-----------CSSSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred ccCcchHHHHHHHHHHh-----------CCCccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence 112222222222 232222 2 67999999999999999 9999999 99999 9999999
Q ss_pred HHHHHHHHHHH
Q 004004 754 HTGTHLFKART 764 (779)
Q Consensus 754 ~t~~~If~~~i 764 (779)
. ...+.+.+
T Consensus 276 ~--~~~l~~l~ 284 (460)
T 2npi_A 276 N--LAELHHII 284 (460)
T ss_dssp S--CHHHHHHH
T ss_pred h--HHHHHHHH
Confidence 8 34444433
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=3.8e-20 Score=223.48 Aligned_cols=79 Identities=28% Similarity=0.403 Sum_probs=58.6
Q ss_pred CcHHHHhccCCCCC-HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCC
Q 004004 673 GTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPF 748 (779)
Q Consensus 673 gTIreNIlfG~~~d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a---dI~LLDDp~ 748 (779)
.|++||+.|..... .++..++++..+|.. ..+|+.+.+|||||||||+|||||.++| ++|||||||
T Consensus 767 ~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 45666665543321 233344455554421 3478889999999999999999999876 699999999
Q ss_pred CCcCHHHHHHHHH
Q 004004 749 SAVDAHTGTHLFK 761 (779)
Q Consensus 749 SALDa~t~~~If~ 761 (779)
|+||+++.+.|.+
T Consensus 837 sGLD~~~~~~L~~ 849 (916)
T 3pih_A 837 VGLHFEDVRKLVE 849 (916)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999998765
No 63
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=8.7e-23 Score=207.79 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=74.8
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE----------cCeEEEEccccccCCCcHHHH
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV----------HGKKAYVPQSSWIQTGTIREN 678 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i----------~g~iayV~Q~pwI~ngTIreN 678 (779)
..+|+ + |++|++++|+||+|||||||+++|.|. +|++| +|.. ...++|++|++ +||
T Consensus 13 ~~~l~-~----i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G-~I~~~~~~~~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 13 KHYVD-A----IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK-QVSRIILTRPAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHH-H----HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT-SCSEEEEEECSCCTTCCCCSSCC------------
T ss_pred HHHHH-h----ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC-eeeeEEecCCchhhhcceEEecCCH-------HHH
Confidence 35677 6 489999999999999999999999999 99999 7742 12589999988 788
Q ss_pred h-ccCCC--------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 679 I-LFGKD--------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 679 I-lfG~~--------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
+ .++.+ .++++.+++++. | | |||||++||||+..+|+++|||||||
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~l~~------------g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 79 IDPYLRPLHDALRDMVEPEVIPKLMEA------------G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp -CTTTHHHHHHHTTTSCTTHHHHHHHT------------T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHh------------C-----------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 8 55421 011111211111 1 1 99999999999999999999999999
Q ss_pred C
Q 004004 750 A 750 (779)
Q Consensus 750 A 750 (779)
+
T Consensus 134 ~ 134 (208)
T 3b85_A 134 T 134 (208)
T ss_dssp C
T ss_pred c
Confidence 9
No 64
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=6.2e-23 Score=210.39 Aligned_cols=130 Identities=14% Similarity=0.199 Sum_probs=94.3
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEc-------------CeEEEEccccccC-----
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-------------GKKAYVPQSSWIQ----- 671 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~-------------g~iayV~Q~pwI~----- 671 (779)
..|+ ++||+|++|++++|+||+|||||||+++|+|++ | | .+.++ ..++|++|++.+|
T Consensus 11 ~~l~-~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G-~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGL-VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--N-YFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--T-TEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccc-CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--C-cEEEeecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4688 999999999999999999999999999999999 4 8 78761 2478999987544
Q ss_pred ------CCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHH-----HHHHccCCC
Q 004004 672 ------TGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL-----ARAVYSNSD 740 (779)
Q Consensus 672 ------ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaL-----ARAly~~ad 740 (779)
++++++| .+|.+ +++.+++++++.+ ..++ .+||||||||++| ||+++.+|+
T Consensus 86 ~~~~l~~~~~~~~-~~g~~--~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 86 NEDFLEYDNYANN-FYGTL--KSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TTCEEEEEEETTE-EEEEE--HHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred ccchhhhhhcccc-cCCCc--HHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 4555666 45543 4556666665432 1221 7899999999999 999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHH
Q 004004 741 VYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 741 I~LLDDp~SALDa~t~~~If~~ 762 (779)
+.+||||||++|.++++.|.+.
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~ 169 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKR 169 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999887654
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.80 E-value=1e-20 Score=211.81 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=104.0
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc--------------------------------------CCCC
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--------------------------------------RISG 652 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~--------------------------------------~~~G 652 (779)
.++ +++|++++| +++|+|++|||||||+++|.+... +.+|
T Consensus 50 ~l~-~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 50 TIT-QLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TEE-EEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cee-eEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 577 999999999 999999999999999999955543 3355
Q ss_pred CeEEEcCe--------------EEEEccccccCCCcHHHHhccCCCCCH----------HHHHHHHHHc-----------
Q 004004 653 AAIKVHGK--------------KAYVPQSSWIQTGTIRENILFGKDMRQ----------SFYEEVLEGC----------- 697 (779)
Q Consensus 653 ~~I~i~g~--------------iayV~Q~pwI~ngTIreNIlfG~~~d~----------~~y~~vl~ac----------- 697 (779)
.+.++|. +++++|++.++-.+-.++..|-..+-. .+|+++.+.-
T Consensus 128 -~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 -AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp -EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred -EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 7888883 799999999888777655544222110 1111111100
Q ss_pred ---------------------------------cc----hHHHhhc--c----------------CCCCc---cccCCCC
Q 004004 698 ---------------------------------AL----NQDIEMW--A----------------DGDLS---VVGERGI 719 (779)
Q Consensus 698 ---------------------------------~L----~~di~~L--p----------------~Gd~T---~IGE~G~ 719 (779)
.+ .+-++.+ | .|.+. .++.++.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00 0111111 1 11111 3445554
Q ss_pred C--------CChHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHH
Q 004004 720 N--------LSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 720 n--------LSGGQKQRIaLARAly~~a--dI~LLDDp~SALDa~t~~~If~~ 762 (779)
. ||||||||++||||++++| +++|||||||+||+++.+.|.+.
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~ 339 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ 339 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHH
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 4 8999999999999999999 99999999999999999988763
No 66
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=3e-22 Score=216.11 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=109.6
Q ss_pred CccEEEeeeEEEeccccccCCCcccccCCcEE-----------------------eeCCcEEEEEcCCCCChhHHHHHHh
Q 004004 588 DVAIDIEAGEYAWDAREENFKKPTIKLTDKMK-----------------------IMKGSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 588 ~~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~-----------------------I~~G~~vaIvG~sGSGKSTLL~~iL 644 (779)
+..|+++|+++.|.+ .++ ++++. +++|++++|+||+|||||||+++|.
T Consensus 41 ~~~i~~~~v~~~y~p--------~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP--------LAR-LIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp TCCCCHHHHHHTHHH--------HHH-HHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEeeehhhhhhh--------HHH-HHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 346999999999953 334 44432 8999999999999999999999999
Q ss_pred ccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCC----C--CCHHHHHHHHHHccchHHHhhccCCCC-ccccCC
Q 004004 645 GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK----D--MRQSFYEEVLEGCALNQDIEMWADGDL-SVVGER 717 (779)
Q Consensus 645 Ge~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~----~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~-T~IGE~ 717 (779)
|.+++.+| . .+++||+|++.++..|++||+.+.. + .|.++..+.+ +.+..|.. +.+
T Consensus 112 gll~~~~G-~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L---------~~l~~~~~~~~~--- 174 (312)
T 3aez_A 112 ALLARWDH-H----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV---------TSVKSGSDYACA--- 174 (312)
T ss_dssp HHHHTSTT-C----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH---------HHHHTTCSCEEE---
T ss_pred hhccccCC-C----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH---------HHhCCCcccCCc---
Confidence 99999888 4 5799999999999999999997532 2 2334444443 33443433 333
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 004004 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (779)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALD 752 (779)
-.||||||||+++|||+..+|+|+|||||++.+|
T Consensus 175 -~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 175 -PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp -EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred -ccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 4799999999999999999999999999999965
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=1.4e-20 Score=185.33 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=81.2
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHH
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL 694 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl 694 (779)
++||++++||+++++||+|||||||++++.+..+..++ . -..++++|++.- + .++...+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~-d----~~~g~~~~~~~~----~--------~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISS-D----FCRGLMSDDEND----Q--------TVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEH-H----HHHHHHCSSTTC----G--------GGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEcc-H----HHHHHhcCcccc----h--------hhHHHHHHHHH
Confidence 57999999999999999999999999987653332222 1 012455555420 0 01111122221
Q ss_pred HHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 004004 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~ 756 (779)
.. ....+..|..+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ~~-----~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 64 YI-----VSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HH-----HHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HH-----HHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 11 1223445666665544 34599999999999999999999999999999999965
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=2.1e-19 Score=215.31 Aligned_cols=49 Identities=31% Similarity=0.565 Sum_probs=44.7
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~---adI~LLDDp~SALDa~t~~~If~ 761 (779)
..+....+|||||||||+||||+.++ |++|||||||++||.+..+.|.+
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 35777889999999999999999996 79999999999999999988765
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=1.9e-19 Score=195.24 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc-----------------------------------------------
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI----------------------------------------------- 647 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~----------------------------------------------- 647 (779)
++++++.+| +++|+|++|||||||+.+|...+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 567888899 99999999999999999998322
Q ss_pred ---cCCCCCeEEEcCe-------------EEEEcccccc-CCCcHHHHhccCCC-----CC--------HHHHHHHHHHc
Q 004004 648 ---PRISGAAIKVHGK-------------KAYVPQSSWI-QTGTIRENILFGKD-----MR--------QSFYEEVLEGC 697 (779)
Q Consensus 648 ---~~~~G~~I~i~g~-------------iayV~Q~pwI-~ngTIreNIlfG~~-----~d--------~~~y~~vl~ac 697 (779)
.+.+| .+.++|. +++.+|+..+ +.|+|.+|+..+.. .| ...|+++.+..
T Consensus 96 ~~~~~~~~-~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGEN-TYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCE-EEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEcCCce-EEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22234 6677773 4566777665 48899999876422 01 12344555442
Q ss_pred c---------------chH-HHhhccCCCCccccC------CCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCc
Q 004004 698 A---------------LNQ-DIEMWADGDLSVVGE------RGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAV 751 (779)
Q Consensus 698 ~---------------L~~-di~~Lp~Gd~T~IGE------~G~nLSGGQKQRIaLARAly----~~adI~LLDDp~SAL 751 (779)
. +.. ..+.++.|.++.+++ ...+||||||||++||||+. ++|+++|||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1 111 113455666665442 35689999999999999995 789999999999999
Q ss_pred CHHHHHHHHH
Q 004004 752 DAHTGTHLFK 761 (779)
Q Consensus 752 Da~t~~~If~ 761 (779)
|+...+.+++
T Consensus 255 D~~~~~~l~~ 264 (322)
T 1e69_A 255 DDYNAERFKR 264 (322)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988765
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=1.3e-21 Score=217.87 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=115.6
Q ss_pred CcccccCCcEEeeCCc--------------------EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----EEEE
Q 004004 609 KPTIKLTDKMKIMKGS--------------------KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----KAYV 664 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~--------------------~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~----iayV 664 (779)
..+++ ++++++++|+ .++|+||+|||||||+++|.|..+|.+| +|.++|. .+|+
T Consensus 36 ~~~l~-~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~G-sI~~~g~~~t~~~~v 113 (413)
T 1tq4_A 36 QEILN-LIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG-AAKTGVVEVTMERHP 113 (413)
T ss_dssp HHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTT-SCCCCC----CCCEE
T ss_pred HHHhh-hccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCc-eEEECCeecceeEEe
Confidence 45788 9999999999 9999999999999999999999999999 8988773 3799
Q ss_pred ccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChH--HHHHHHHHHHHcc-----
Q 004004 665 PQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG--QKQRIQLARAVYS----- 737 (779)
Q Consensus 665 ~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG--QKQRIaLARAly~----- 737 (779)
+|++...+-|++||+.++.+ +++.++.++..++.+. +..+ . |||| ||||++||||+.+
T Consensus 114 ~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~~~~~p~ 178 (413)
T 1tq4_A 114 YKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAISMMKKEF 178 (413)
T ss_dssp EECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHHHTTCEE
T ss_pred ccccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHHhcCCCe
Confidence 99987678899999988754 3456777877776431 1222 2 9999 9999999999999
Q ss_pred -----CCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 738 -----NSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 738 -----~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||+++||||||+||+.+.+++.+
T Consensus 179 ~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 179 YFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp EEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred EEEEecCcccccCcccccCCHHHHHHHHH
Confidence 999999999999999998887654
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=7.4e-19 Score=210.97 Aligned_cols=49 Identities=31% Similarity=0.576 Sum_probs=44.5
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~a---dI~LLDDp~SALDa~t~~~If~ 761 (779)
..+....+||||||||++||||+.++| ++|||||||++||+++.+.+.+
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 889 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD 889 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 466778899999999999999999875 9999999999999999988765
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=6.2e-19 Score=212.37 Aligned_cols=49 Identities=33% Similarity=0.560 Sum_probs=44.6
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHH
Q 004004 713 VVGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 713 ~IGE~G~nLSGGQKQRIaLARAly~~a---dI~LLDDp~SALDa~t~~~If~ 761 (779)
..+....+||||||||++||||+.++| ++|||||||++||.++.+.|.+
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 907 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN 907 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 467778899999999999999999875 9999999999999999988765
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.75 E-value=3e-19 Score=177.26 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=81.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC-CCCCeEE--E-----cCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHH
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIK--V-----HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~--i-----~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~a 696 (779)
+++|+||+|||||||+++|+|++.. ..| ... . ...++|++|++ |.++|++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g-~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIG-FWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEE-EEEEEEC------CCEEEEEET-----TCCEEEE-EE-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCC-EEhhhhccccccceeEEEeecC-----cHHHHHH-Hh-------------
Confidence 6899999999999999999999852 234 211 1 23589999987 3445542 11
Q ss_pred ccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCcCHHHHHHHHH
Q 004004 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA-----VYSNSDVYIFDD--PFSAVDAHTGTHLFK 761 (779)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARA-----ly~~adI~LLDD--p~SALDa~t~~~If~ 761 (779)
+. ++ .+..+++.+.+||||||||++|||| ++.+|++++||| ||+++|+...+.+.+
T Consensus 62 --~~-----~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 62 --KF-----FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp --TT-----CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred --hc-----CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 00 01 1246788899999999999999996 999999999999 999999988776654
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.71 E-value=1.5e-20 Score=204.46 Aligned_cols=92 Identities=26% Similarity=0.354 Sum_probs=74.5
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHH
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY 690 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y 690 (779)
+++ ++++++++|+.++|+||+|||||||+++|+|+++|.+| .|.++|..-+.. + ..++++.+
T Consensus 160 ~l~-~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g-~i~i~~~~e~~~--~-----~~~~~i~~--------- 221 (330)
T 2pt7_A 160 AIS-AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER-IISIEDTEEIVF--K-----HHKNYTQL--------- 221 (330)
T ss_dssp HHH-HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC-EEEEESSCCCCC--S-----SCSSEEEE---------
T ss_pred HHh-hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-EEEECCeecccc--c-----cchhEEEE---------
Confidence 577 89999999999999999999999999999999999999 999987531110 0 01111111
Q ss_pred HHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 691 ~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
++ | |||+||++||||+.++||+++||||+|
T Consensus 222 ---------------~~----------g----gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 222 ---------------FF----------G----GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp ---------------EC----------B----TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred ---------------Ee----------C----CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 00 1 899999999999999999999999998
No 75
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3.3e-20 Score=182.92 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=80.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCC---CCCeEEEcCe-----------------EE----EEccccccCCCcHHHHh
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK-----------------KA----YVPQSSWIQTGTIRENI 679 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~~~---~G~~I~i~g~-----------------ia----yV~Q~pwI~ngTIreNI 679 (779)
+.++|+|+||||||||+++|+|++++. .| .|+++|. ++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G-~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVA-VVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE-EEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceE-EEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec--
Confidence 589999999999999999999999998 78 8887652 34 778888776 222
Q ss_pred ccCCCCCHHHHHHHHHHccchHHHhh-ccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 004004 680 LFGKDMRQSFYEEVLEGCALNQDIEM-WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (779)
Q Consensus 680 lfG~~~d~~~y~~vl~ac~L~~di~~-Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~ 742 (779)
+ +++. .+++++.++. +| |++|.|||+ |||||||||+||||++++|+++
T Consensus 77 --~---~~~~------~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 --V---SEEE------GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp --C---CHHH------HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred --C---Chhh------hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 2221 7789999999 99 999999995 9999999999999999999885
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=2.2e-19 Score=189.98 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=75.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC----------eEEEEccccccCCC-cHHHHhccCCCCCH----HH
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KKAYVPQSSWIQTG-TIRENILFGKDMRQ----SF 689 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------~iayV~Q~pwI~ng-TIreNIlfG~~~d~----~~ 689 (779)
.++|+||+|||||||+++|.|...|.+| ++.++| .++|++|++.++.. |+.||+.||...+. +.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G-~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA-SSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC-ccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 4899999999999999999999999999 898766 48999999988754 99999999975432 22
Q ss_pred HHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 004004 690 YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 690 y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t 755 (779)
..+.++ .+..+.++ ..||||||||+++|||+.. +|+||||++++|+..
T Consensus 83 i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD 130 (270)
T 3sop_A 83 IEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD 130 (270)
T ss_dssp HHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH
T ss_pred HHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH
Confidence 333333 22222222 3699999999999999765 999999999999876
No 77
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.65 E-value=7.2e-17 Score=177.95 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=42.1
Q ss_pred CCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 716 ERGINLSGGQKQRIQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 716 E~G~nLSGGQKQRIaLARAly------~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
....+||||||||++||||+. ++|+++||||||++||+++.+.+++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~ 326 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 455689999999999999998 7999999999999999999998875
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.65 E-value=2.9e-19 Score=188.03 Aligned_cols=141 Identities=18% Similarity=0.128 Sum_probs=113.8
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC-CCCeEEEcCe---------EEEEcc-----ccccCCCc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGK---------KAYVPQ-----SSWIQTGT 674 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-~G~~I~i~g~---------iayV~Q-----~pwI~ngT 674 (779)
++|+ +++ +++|+.++|+||+|||||||+++|+|+++|. +| +|.++|. +++++| ++.-|..+
T Consensus 15 ~vl~-~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G-~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~ 90 (261)
T 2eyu_A 15 DKVL-ELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADA 90 (261)
T ss_dssp THHH-HGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC-EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHH
T ss_pred HHHH-HHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC-EEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHH
Confidence 4788 888 9999999999999999999999999999998 89 8987652 345566 44556678
Q ss_pred HHHHhccC-------CCCCHHHHHHHHHHccc-----------------hHH------------HhhccCCCCccccCCC
Q 004004 675 IRENILFG-------KDMRQSFYEEVLEGCAL-----------------NQD------------IEMWADGDLSVVGERG 718 (779)
Q Consensus 675 IreNIlfG-------~~~d~~~y~~vl~ac~L-----------------~~d------------i~~Lp~Gd~T~IGE~G 718 (779)
|+.|+... .|.|++..+++++++.- ++- -..+++++++.|++++
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl 170 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRL 170 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEe
Confidence 88887654 34488877777766421 111 1245788999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCE--EEEeCCCCCcCHHHH
Q 004004 719 INLSGGQKQRIQLARAVYSNSDV--YIFDDPFSAVDAHTG 756 (779)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adI--~LLDDp~SALDa~t~ 756 (779)
.++||| ||+++||+++.||+| +|+||++|++|...+
T Consensus 171 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~ 208 (261)
T 2eyu_A 171 LPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQ 208 (261)
T ss_dssp ECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHH
T ss_pred EecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHH
Confidence 999999 899999999999999 999999999998753
No 79
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.64 E-value=4.7e-19 Score=195.79 Aligned_cols=138 Identities=20% Similarity=0.165 Sum_probs=116.4
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC-CCCeEEEc---------CeEEEEcc-----ccccCCCcH
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVH---------GKKAYVPQ-----SSWIQTGTI 675 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-~G~~I~i~---------g~iayV~Q-----~pwI~ngTI 675 (779)
.++ +++ +++|+.++|+||+|||||||+++|+|++++. +| .|... +.++||+| ++..|+++|
T Consensus 127 ~l~-~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g-~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 127 KVL-ELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SHH-HHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC-EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred HHH-HHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc-EEEEecccHhhhhccCceEEEeeecCCCHHHHHHHH
Confidence 455 443 8899999999999999999999999999997 89 88542 35789999 899999999
Q ss_pred HHHhccCCCC-------CHHHHHHHHHHccch-----------------HH------------HhhccCCCCccccCCCC
Q 004004 676 RENILFGKDM-------RQSFYEEVLEGCALN-----------------QD------------IEMWADGDLSVVGERGI 719 (779)
Q Consensus 676 reNIlfG~~~-------d~~~y~~vl~ac~L~-----------------~d------------i~~Lp~Gd~T~IGE~G~ 719 (779)
++|+..+.+. |++..+.+++++... +- ...+++++++.|++++.
T Consensus 203 ~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~ 282 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLL 282 (372)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEE
T ss_pred HHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeE
Confidence 9999875444 888888888876431 11 12357899999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCE--EEEeCCCCCcCHH
Q 004004 720 NLSGGQKQRIQLARAVYSNSDV--YIFDDPFSAVDAH 754 (779)
Q Consensus 720 nLSGGQKQRIaLARAly~~adI--~LLDDp~SALDa~ 754 (779)
++||| ||+++||+++.+|+| +|+||++|++|..
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 99999 899999999999999 9999999999976
No 80
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.64 E-value=1.5e-18 Score=185.38 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=95.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCC----CHHHHHHHHHH
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDM----RQSFYEEVLEG 696 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~----d~~~y~~vl~a 696 (779)
+++.+++|+|++|||||||.+.|.+.+++... . ...+.+|+|++++++.++++|+.++.+. +....-++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~-~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~ 104 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG-G---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM 104 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG-G---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC-C---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHH
Confidence 36789999999999999999999999976321 1 1245677999999999999999875321 00000112223
Q ss_pred ccchHHHhhccCCCCc------cccCCCCCCChHHHHHHHHH--HHHccCCCEEEEeCCCCCcCHHH
Q 004004 697 CALNQDIEMWADGDLS------VVGERGINLSGGQKQRIQLA--RAVYSNSDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 697 c~L~~di~~Lp~Gd~T------~IGE~G~nLSGGQKQRIaLA--RAly~~adI~LLDDp~SALDa~t 755 (779)
..+.++++.+++|++| .+.+.+.++||||+||+++| |++ +|||+|+|++++++|+.+
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 3566788899999665 46677899999999999998 777 999999999999999853
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.63 E-value=7.5e-18 Score=180.90 Aligned_cols=128 Identities=11% Similarity=0.145 Sum_probs=94.5
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------------eEEEEccccc-c-CCC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSW-I-QTG 673 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------------~iayV~Q~pw-I-~ng 673 (779)
++||++++|+.++++||+||||||+++.|.|.+++.+| +|.+.| .++|++|++- . ...
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 67788999999999999999999999999999999999 898865 2799999986 4 456
Q ss_pred cHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCc
Q 004004 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAV 751 (779)
Q Consensus 674 TIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ad--I~LLDDp~SAL 751 (779)
|++||+.++.....+ ..+++.+++.+ -++..+ ..|| |||++||||+..+|+ +++|| ||+++
T Consensus 171 ~v~e~l~~~~~~~~d--~~lldt~gl~~-------~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD--VVLCDTSGRLH-------TNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTTCS--EEEECCCCCSS-------CCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcCCc--chHHhcCCCCc-------chhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 899999865211000 01122222211 111222 2388 999999999999999 99999 99999
Q ss_pred CHHHHHHHH
Q 004004 752 DAHTGTHLF 760 (779)
Q Consensus 752 Da~t~~~If 760 (779)
|+.....-|
T Consensus 234 D~~~~~~~~ 242 (302)
T 3b9q_A 234 NMLPQAREF 242 (302)
T ss_dssp GGHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998665433
No 82
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.61 E-value=5.8e-18 Score=186.73 Aligned_cols=133 Identities=18% Similarity=0.094 Sum_probs=96.8
Q ss_pred CCcEEeeC--CcEEEEEcCCCCChhHHHHHHhccccCCC----CCeEEEc----C-----------eEEEEccccccCCC
Q 004004 615 TDKMKIMK--GSKVAVCGSVGSGKSSLLSSILGEIPRIS----GAAIKVH----G-----------KKAYVPQSSWIQTG 673 (779)
Q Consensus 615 ~inl~I~~--G~~vaIvG~sGSGKSTLL~~iLGe~~~~~----G~~I~i~----g-----------~iayV~Q~pwI~ng 673 (779)
.++++|++ |++++|+||+|||||||+++|.|.+++.+ | ++.++ | .++|++|++.++++
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G-~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG-REFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV 238 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT-HHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhH-HHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 78899999 99999999999999999999999999999 8 77652 2 27889999999999
Q ss_pred cHHHHhccCCC-CCHHHHHHHHHHccchHHHhhccCC--CCccc-c-------CCCCCCChHHHHHHHHHHHH---cc--
Q 004004 674 TIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADG--DLSVV-G-------ERGINLSGGQKQRIQLARAV---YS-- 737 (779)
Q Consensus 674 TIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~G--d~T~I-G-------E~G~nLSGGQKQRIaLARAl---y~-- 737 (779)
|++|||.|+.. ..+...............+..++.+ .+..+ + ++|.++||||+||+++||++ ++
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~ 318 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY 318 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence 99999998753 2222233333333445566665543 33322 3 68899999999999999999 87
Q ss_pred CCCEEEEeCCC
Q 004004 738 NSDVYIFDDPF 748 (779)
Q Consensus 738 ~adI~LLDDp~ 748 (779)
+++++++|||+
T Consensus 319 ~~~ililde~~ 329 (365)
T 1lw7_A 319 KVPYIEIESPS 329 (365)
T ss_dssp GCCCEEEECSS
T ss_pred CCCEEEeCCCC
Confidence 89999999996
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.60 E-value=3e-17 Score=179.79 Aligned_cols=127 Identities=11% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------------eEEEEccccc--cCCC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSW--IQTG 673 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------------~iayV~Q~pw--I~ng 673 (779)
.+||++++|+.++++||+||||||+++.|.|.+++.+| +|.+.| .++|++|++. ....
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 67888999999999999999999999999999999999 898765 2799999986 4567
Q ss_pred cHHHHhccCCC--CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCC
Q 004004 674 TIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFS 749 (779)
Q Consensus 674 TIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ad--I~LLDDp~S 749 (779)
|++|||.++.. +|. .+++.+++.+ -++..+ ..|| |||++||||+..+|+ +++|| ||+
T Consensus 228 tv~e~l~~~~~~~~d~----~lldt~Gl~~-------~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV----VLCDTSGRLH-------TNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCSE----EEEECCCCSS-------CCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCHH----HHHHhcCCCh-------hhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 89999987531 110 1122222211 111222 2388 999999999999999 99999 999
Q ss_pred CcCHHHHHHHHH
Q 004004 750 AVDAHTGTHLFK 761 (779)
Q Consensus 750 ALDa~t~~~If~ 761 (779)
++|+.+..+-|+
T Consensus 289 glD~~~~~~~~~ 300 (359)
T 2og2_A 289 GLNMLPQAREFN 300 (359)
T ss_dssp GGGGHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999987655443
No 84
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=9.6e-18 Score=169.85 Aligned_cols=122 Identities=15% Similarity=0.271 Sum_probs=95.1
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCC---cHHHHhc--cCCC--CCHHHHHH
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTG---TIRENIL--FGKD--MRQSFYEE 692 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ng---TIreNIl--fG~~--~d~~~y~~ 692 (779)
.++|++++|+||+|||||||++.|.|.+++ .++|++|++.+++. |+++|+. |+.+ .+.++..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578999999999999999999999998865 58999999998754 5666654 4433 46677778
Q ss_pred HHHHccchHHHhhccCCCCccccCCCCCCChH----HHHHHHHHHHHccCCCEEEEeCCCCC-------cCHHHHHHHHH
Q 004004 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGG----QKQRIQLARAVYSNSDVYIFDDPFSA-------VDAHTGTHLFK 761 (779)
Q Consensus 693 vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGG----QKQRIaLARAly~~adI~LLDDp~SA-------LDa~t~~~If~ 761 (779)
+++..++.+.+.. | +.++|+| |+||+++||++..+++++++|||+++ ||+.++..+.+
T Consensus 73 ~l~~~~~~~~~~~-~----------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 73 HAQALLRGLPVEM-P----------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHTTCCEEE-C----------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHcCCCcCC-C----------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 8777665544332 2 4455666 46899999999999999999999999 99988887765
Q ss_pred H
Q 004004 762 A 762 (779)
Q Consensus 762 ~ 762 (779)
.
T Consensus 142 ~ 142 (211)
T 3asz_A 142 R 142 (211)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.58 E-value=1.1e-18 Score=192.26 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=133.0
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC-CCCCCCCccE---------EEe
Q 004004 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITE-PTSKASDVAI---------DIE 594 (779)
Q Consensus 525 ~~Lt~g~vft~lal~~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~-~~~~~~~~~I---------~~~ 594 (779)
+.+|.+.+..++.++..+..| .+....+.+..+..+.+|++.++ .|+.+..... .........+ +|+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl-~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~f~ 139 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR-PPACEHGTISVTIRKPSFTRRTLEDYAQQGFFK 139 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC-TTTBCTTCCEEEEECCCCCCCCHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe-cCccCCCCeEEEEEecCCCCCCHHHHHhcCCcC
Confidence 578999988888776655544 22222222223334556777776 2221111100 0000011234 788
Q ss_pred eeEEE---eccccccCCCccc---------ccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC---
Q 004004 595 AGEYA---WDAREENFKKPTI---------KLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (779)
Q Consensus 595 n~sFs---w~~~~~~~~~~~L---------~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--- 659 (779)
|++|+ |++ . +.++| + +++++|++|+.++|+||+|||||||+++|+|++++.+| .|.++|
T Consensus 140 ~v~f~~~~Y~~---~-~~~vL~~~~~~~~~~-~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ie~~~e 213 (361)
T 2gza_A 140 HVRPMSKSLTP---F-EQELLALKEAGDYMS-FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR-LITIEDVPE 213 (361)
T ss_dssp CCCCSCSCCCH---H-HHHHHHHHHHTCHHH-HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC-EEEEESSSC
T ss_pred ccccccccccc---h-hHHHHhhhhhHHHHH-HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce-EEEECCccc
Confidence 99998 853 1 23444 8 99999999999999999999999999999999999999 998865
Q ss_pred --------eEEEEc-ccccc---CCCcHHHHhccCCCCCHHH-HHHHHHHccchHHHhhccCCCCccccCCCCCCChHHH
Q 004004 660 --------KKAYVP-QSSWI---QTGTIRENILFGKDMRQSF-YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (779)
Q Consensus 660 --------~iayV~-Q~pwI---~ngTIreNIlfG~~~d~~~-y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQK 726 (779)
.++|++ |++.+ +..|+++||..+...++++ ....++.....+.++.+|.|.+|.+|+-+.+-..++.
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 489999 99886 8899999998875433221 1111122334567888999999999999999999999
Q ss_pred HHHHHHHH
Q 004004 727 QRIQLARA 734 (779)
Q Consensus 727 QRIaLARA 734 (779)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987754
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.56 E-value=1.1e-16 Score=166.54 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=85.6
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE---cCeEEEEccccccCCCcHHHHhccCC-
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HGKKAYVPQSSWIQTGTIRENILFGK- 683 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i---~g~iayV~Q~pwI~ngTIreNIlfG~- 683 (779)
..++|+ |+||++++|++++|+||+|||||||++.|.|.+ | .+.+ ...++|++|++....-|.++|+.+..
T Consensus 11 ~~~~l~-~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G-~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 11 VDLGTE-NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----G-QNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----T-GGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTT
T ss_pred Cceeec-ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----c-hhcccccCCceEEEeCCcCccccCHhHhhhhhcc
Confidence 356899 999999999999999999999999999999976 5 4432 34689999998655679999986422
Q ss_pred --C------CCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q 004004 684 --D------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (779)
Q Consensus 684 --~------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~ 754 (779)
. ++.+++.+. ++.+.++....+ ..|||||+||+++ |++..+|+++|+|+|+...|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 85 QYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred CCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 1 122222333 333334444433 5799999999988 6888999999999999887654
No 87
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=5.4e-16 Score=156.09 Aligned_cols=152 Identities=15% Similarity=0.223 Sum_probs=87.1
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc-----cCCCCCeEEEcCe-----
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHGK----- 660 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~-----~~~~G~~I~i~g~----- 660 (779)
++++|++|.|+. +.++ + |++++|.+++|+|++|||||||++.|.|.. .++.| ++...+.
T Consensus 4 l~~~~~~~~~~~-------~~l~-~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G-~~~~~~~~~~~~ 72 (210)
T 1pui_A 4 LNYQQTHFVMSA-------PDIR-H--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG-RTQLINLFEVAD 72 (210)
T ss_dssp -------CEEEE-------SSGG-G--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET
T ss_pred hhhhhhhheeec-------CCHh-H--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc-cceeeEEEEecC
Confidence 688999999952 4677 6 889999999999999999999999999988 78888 5543221
Q ss_pred -EEEEccccccCC--------CcHHHHh-------------cc----CCCCCHHHHHHHHHHccchHHHhhccCCCCc-c
Q 004004 661 -KAYVPQSSWIQT--------GTIRENI-------------LF----GKDMRQSFYEEVLEGCALNQDIEMWADGDLS-V 713 (779)
Q Consensus 661 -iayV~Q~pwI~n--------gTIreNI-------------lf----G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T-~ 713 (779)
+-++ ..|-... ...+..+ .+ ..+.... .+++.+.. + ..+... .
T Consensus 73 ~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~------~--~~~~~~~~ 142 (210)
T 1pui_A 73 GKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWA------V--DSNIAVLV 142 (210)
T ss_dssp TEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH------H--HTTCCEEE
T ss_pred CEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHHH------H--HcCCCeEE
Confidence 1111 1110000 0001110 00 0011111 11111111 1 122322 2
Q ss_pred ccCCCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQR-IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKAR 763 (779)
Q Consensus 714 IGE~G~nLSGGQKQR-IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~ 763 (779)
++.+--.+||||||| +..||+++++++..++|+|+||+|...-..+++..
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHH
Confidence 466767899999999 89999999999999999999999999888888753
No 88
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.50 E-value=1.8e-16 Score=178.53 Aligned_cols=137 Identities=13% Similarity=0.022 Sum_probs=108.2
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------- 660 (779)
..++++|+++.|+. ...+++ ++ |+|++|++++|+||+|||||||+++|.|..++..| .|.++|.
T Consensus 130 ~~l~~~~v~~~~~t-----g~~vld-~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G-~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----GVRAIN-AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI-VVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCC-----SCHHHH-HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHH
T ss_pred CceEEeccceecCC-----CceEEe-ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEeceecHHHHHH
Confidence 45888999999863 246899 99 99999999999999999999999999999999999 9988763
Q ss_pred -------------EEEEccc--cccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH
Q 004004 661 -------------KAYVPQS--SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (779)
Q Consensus 661 -------------iayV~Q~--pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ 725 (779)
++||+|+ |...+-|+.+|+.+.. +|.+. . .+++.. +=+...+|||||
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~~---~--~~~v~~--------~ld~l~~lS~g~ 263 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFRD---R--GQHVLL--------IMDSLTRYAMAQ 263 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHHT---T--TCEEEE--------EEECHHHHHHHH
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHHh---C--CCCHHH--------HHHhHHHHHHHH
Confidence 6999994 4566789999998752 22211 0 011111 112356899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 726 KQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
|||+|| ..+|++ |+++|+.+...+.+
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l~~ 289 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKLPA 289 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHHHH
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHHHH
Confidence 999999 889988 99999999988764
No 89
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.49 E-value=2.5e-14 Score=156.88 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=46.5
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHHHHhHhcc
Q 004004 720 NLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQLLFSINH 777 (779)
Q Consensus 720 nLSGGQKQRIaLARAly---------~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~~~~~~~~ 777 (779)
.||||||||++||||+. .+|+|+|||||||+||++..+++++. +... .+.++.++|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~-l~~~-~qt~i~~th 329 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL-AASV-PQAIVTGTE 329 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHH-HHHS-SEEEEEESS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHH-HHhc-CcEEEEEEe
Confidence 59999999999999999 89999999999999999999998764 3322 245555555
No 90
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.47 E-value=1.2e-16 Score=162.08 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=98.4
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhcc----CCCCCHHHHHHHHH
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF----GKDMRQSFYEEVLE 695 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlf----G~~~d~~~y~~vl~ 695 (779)
.++|++++|+||+|||||||+++|.|.+++. | ..+++++|+.+.++.+.++|+.. +.+. +.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~ 84 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPE-------TFD 84 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGG-------GBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------CceEEEecCCCcCCHHHHHHhcccccCCCCc-------hhh
Confidence 5789999999999999999999999999876 5 25789999999999999888742 1111 111
Q ss_pred HccchHHHhhccCC--CCccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEeCCC-----------CCcCHHHHHHH
Q 004004 696 GCALNQDIEMWADG--DLSVVGERGINLSGGQKQRIQLA-RAVYSNSDVYIFDDPF-----------SAVDAHTGTHL 759 (779)
Q Consensus 696 ac~L~~di~~Lp~G--d~T~IGE~G~nLSGGQKQRIaLA-RAly~~adI~LLDDp~-----------SALDa~t~~~I 759 (779)
...+.+.+..++.| .++.++++|.++||||+||+++| |+++-++.++++|||. ..||+..+..+
T Consensus 85 ~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~ 162 (208)
T 3c8u_A 85 FEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLE 162 (208)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHH
Confidence 22334455666666 45678999999999999999999 9999999998899974 44677666544
No 91
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.46 E-value=1e-13 Score=151.27 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=46.6
Q ss_pred CCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHHH--HHhHhcc
Q 004004 718 GINLSGGQKQ------RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFHQ--LLFSINH 777 (779)
Q Consensus 718 G~nLSGGQKQ------RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~~--~~~~~~~ 777 (779)
-..||||||| |+++|||+..+|+++||||||++||+...+.+++ .+..+.++ .++.|+|
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH 312 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSH 312 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEES
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEC
Confidence 3579999999 6788899999999999999999999999988875 34443332 2444556
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.46 E-value=3.8e-14 Score=174.01 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=99.2
Q ss_pred ccEEEee-----eEEEeccccccCCCcccccCCcEEeeC-------CcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 589 VAIDIEA-----GEYAWDAREENFKKPTIKLTDKMKIMK-------GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 589 ~~I~~~n-----~sFsw~~~~~~~~~~~L~~~inl~I~~-------G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
..|+++| +++.|+. +.++++ |++|++++ |+.++|+||+|||||||++.+ |...+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----~~~v~n-di~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a----- 816 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----DDFIPN-DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA----- 816 (1022)
T ss_dssp CCEEEEEECCCC------C-----CCCCCE-EEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH-----
T ss_pred ceEEEEeccccEEEEEecC-----CceEee-eeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh-----
Confidence 4699999 8888843 257899 99999987 999999999999999999999 9887532
Q ss_pred EcCeEE-EEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 657 VHGKKA-YVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 657 i~g~ia-yV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
+++ ||||++. .-|+.|||..- .++.+++.. | -.++|+|+++ +++||++
T Consensus 817 ---qiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~~---~--------~stf~~em~~-~a~al~l 865 (1022)
T 2o8b_B 817 ---QMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIMS---G--------ESTFFVELSE-TASILMH 865 (1022)
T ss_dssp ---TTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHH
T ss_pred ---heeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHhh---c--------hhhhHHHHHH-HHHHHHh
Confidence 244 9999984 66788888521 122222221 1 2467887775 9999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 736 YSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 736 y~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
..+|+++|||||++++|+..+..+..+++..+.+
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987776666655443
No 93
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.44 E-value=5.6e-15 Score=147.88 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=81.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------eEEEEccccccCCCcHHHHhccCCCCCHHHHH
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYE 691 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-----------~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~ 691 (779)
|++++|+||+|||||||++.|+|+++ .+| +.++| .++|++|+. +++ ++|+.--. +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G--i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~~-~~~---- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG--VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRVG-LEP---- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT--CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEECC-CCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC--EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhccc-ccC----
Confidence 78999999999999999999999998 777 55544 479999986 443 33332100 000
Q ss_pred HHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCcCHHHHHH
Q 004004 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI-QLAR---AVYSNSDVYIFDD--PFSAVDAHTGTH 758 (779)
Q Consensus 692 ~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI-aLAR---Aly~~adI~LLDD--p~SALDa~t~~~ 758 (779)
+ +...+..+|+.|.++|||||+++ +|+| |+.++||++|+|| |+...|...-+.
T Consensus 69 ---------~-----~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 69 ---------P-----PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ---------C-----SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ---------C-----ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0 01123489999999999999999 5666 7899999999999 888888865443
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.42 E-value=5.2e-14 Score=168.00 Aligned_cols=124 Identities=16% Similarity=0.086 Sum_probs=89.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-CCCCCeEEEc--CeEEEEc
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVH--GKKAYVP 665 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-~~~G~~I~i~--g~iayV~ 665 (779)
..++++++.. +--+ ..+.++++ |++|+ |+.++|+||+|||||||+++|.|... +..| .+.-. ..+++++
T Consensus 549 ~~i~i~~~rH--P~le-~~~~~vl~-disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G-~~vpa~~~~i~~v~ 620 (765)
T 1ewq_A 549 DRLQIRAGRH--PVVE-RRTEFVPN-DLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVG-SFVPAEEAHLPLFD 620 (765)
T ss_dssp SSEEEEEECC--TTGG-GTSCCCCE-EEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT-CCBSSSEEEECCCS
T ss_pred CcEEEEEeEC--ceEc-cCCceEee-eccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccC-ceeehhccceeeHH
Confidence 4688888732 2100 02357888 88888 99999999999999999999999864 6778 54211 2466776
Q ss_pred cccccCC-CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH--ccCCCEE
Q 004004 666 QSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVY 742 (779)
Q Consensus 666 Q~pwI~n-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl--y~~adI~ 742 (779)
| +|. -|++||+.+| +|+|++|++.+||++ ..+|+++
T Consensus 621 ~---i~~~~~~~d~l~~g--------------------------------------~S~~~~e~~~la~il~~a~~p~Ll 659 (765)
T 1ewq_A 621 G---IYTRIGASDDLAGG--------------------------------------KSTFMVEMEEVALILKEATENSLV 659 (765)
T ss_dssp E---EEEECCC------C--------------------------------------CSHHHHHHHHHHHHHHHCCTTEEE
T ss_pred H---hhccCCHHHHHHhc--------------------------------------ccHHHHHHHHHHHHHHhccCCCEE
Confidence 6 333 3666665432 589999999999999 9999999
Q ss_pred EEeCC---CCCcCHHHHH-HHHH
Q 004004 743 IFDDP---FSAVDAHTGT-HLFK 761 (779)
Q Consensus 743 LLDDp---~SALDa~t~~-~If~ 761 (779)
||||| ||++|..... .+.+
T Consensus 660 LLDEpgrGTs~lD~~~~~~~i~~ 682 (765)
T 1ewq_A 660 LLDEVGRGTSSLDGVAIATAVAE 682 (765)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCcCHHHHHHHHHH
Confidence 99999 9999987653 4443
No 95
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.38 E-value=8.5e-16 Score=154.78 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=88.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcccc-------------CCCCCeEEEcCe-EEE---------EccccccCCCcHHH
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP-------------RISGAAIKVHGK-KAY---------VPQSSWIQTGTIRE 677 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~-------------~~~G~~I~i~g~-iay---------V~Q~pwI~ngTIre 677 (779)
++|++++|+||+|||||||+++|+|+++ |..| . ++|. ..+ ++|+++++++|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g-~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPG-E--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTT-C--CBTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCc-c--cCCceEEEccHHHHHHHHHcCCCEeeeeecC
Confidence 5899999999999999999999999986 6677 5 3442 222 36889999999999
Q ss_pred HhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH-HHccCCCEEEEeCCCCCcCHHHH
Q 004004 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR-AVYSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 678 NIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR-Aly~~adI~LLDDp~SALDa~t~ 756 (779)
|+ +|. +++..+++++.....- ++..|+|.++.... |+ .|| +++.+|++.+|||++|++|.+++
T Consensus 79 n~-~g~--~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e 142 (198)
T 1lvg_A 79 NL-YGT--SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETE 142 (198)
T ss_dssp EE-EEE--EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred cc-CCC--CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence 98 775 4667778877521110 11234555554321 22 577 88999999999999999999999
Q ss_pred HHHHHH
Q 004004 757 THLFKA 762 (779)
Q Consensus 757 ~~If~~ 762 (779)
+.|.+.
T Consensus 143 ~~i~~~ 148 (198)
T 1lvg_A 143 ESLAKR 148 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.37 E-value=4.1e-13 Score=154.93 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=83.1
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhc-cCCCCCHHHHHHHHH
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL-FGKDMRQSFYEEVLE 695 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIl-fG~~~d~~~y~~vl~ 695 (779)
+..+++|+.++|+|++|||||||++.++|..++. |.. .+.|++|++. .++++|.. +|- +.+++ .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~-----vi~~~~ee~~---~~l~~~~~~~g~--~~~~~----~ 339 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KER-----AILFAYEESR---AQLLRNAYSWGM--DFEEM----E 339 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCC-----EEEEESSSCH---HHHHHHHHTTSC--CHHHH----H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCC-----EEEEEEeCCH---HHHHHHHHHcCC--CHHHH----H
Confidence 3489999999999999999999999999998874 622 2567788873 36666652 332 21111 1
Q ss_pred HccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q 004004 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (779)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~ 754 (779)
. .|.......+-..|||||+||+++||++..+|+++++| ||++||..
T Consensus 340 ~-----------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~ 386 (525)
T 1tf7_A 340 R-----------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARG 386 (525)
T ss_dssp H-----------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSS
T ss_pred h-----------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhh
Confidence 1 12222233344679999999999999999999999999 99999997
No 97
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=152.58 Aligned_cols=163 Identities=16% Similarity=0.225 Sum_probs=101.6
Q ss_pred cEEEeeeEEEeccccccCCCcccccCCcEEeeCCcE--EEEEcCCCCChhHHHHHHhccccCCCCCeE-------EEcCe
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSK--VAVCGSVGSGKSSLLSSILGEIPRISGAAI-------KVHGK 660 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~--vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I-------~i~g~ 660 (779)
.+++++ +++|++ .+ ++ ++||++++|+. ++|+||+|||||||+++|+|.. ..|..+ .. ..
T Consensus 16 ~l~~~~-~~~y~~------~~-L~-~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~~~~~~~~~~~-~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS------LP-DQ-LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEPATHTQPGVQL-QS 83 (427)
T ss_dssp -CCCCC-CC-CC--------C-HH-HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--C-------CCSSCEE-EE
T ss_pred eEEEee-EEEECC------ee-cC-CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCcCCCCCccceE-ee
Confidence 456666 777754 35 88 99999999999 9999999999999999999984 222111 11 25
Q ss_pred EEEEccccccC-CCcHHHHhccCCCCCHH-HHHHHHHHc--cchHHHhh-------ccCCCCc-------cccCCCCCCC
Q 004004 661 KAYVPQSSWIQ-TGTIRENILFGKDMRQS-FYEEVLEGC--ALNQDIEM-------WADGDLS-------VVGERGINLS 722 (779)
Q Consensus 661 iayV~Q~pwI~-ngTIreNIlfG~~~d~~-~y~~vl~ac--~L~~di~~-------Lp~Gd~T-------~IGE~G~nLS 722 (779)
++|++|++.++ +-|+.||+.||...+.+ .+..+.+.. ...+.++. ++..-++ .|-+.|..|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 89999998876 67999999999876532 122221111 11111111 1111122 2334556677
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
-.+ +.++|+|..+++|+++|+|+..|...-...+++ .|+..|
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~-~I~~~L 205 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKI-KITSEL 205 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHH-HHHHHH
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHH-HHHHHH
Confidence 776 899999999999999999999998765555443 354433
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.37 E-value=1.2e-13 Score=151.34 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=82.2
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCC----CCe-EEEcC-------eEEEEccccccCCCcHHHHhccC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRIS----GAA-IKVHG-------KKAYVPQSSWIQTGTIRENILFG 682 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~----G~~-I~i~g-------~iayV~Q~pwI~ngTIreNIlfG 682 (779)
+..+++|+.++|+||+|||||||++.+++.. +|.+ | . +.+++ ++++++|.+.++..++.|||.+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G-~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG-SVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSC-EEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCC-eEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 5789999999999999999999999999998 5555 5 5 66655 24556677666666777777665
Q ss_pred CCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCCcCHH
Q 004004 683 KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-------SNSDVYIFDDPFSAVDAH 754 (779)
Q Consensus 683 ~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly-------~~adI~LLDDp~SALDa~ 754 (779)
..++ |++|+|++.+||++. .+|+++++|||++.+|+.
T Consensus 204 ~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 204 RAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp ECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred ecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 4332 467888888888888 689999999999999996
No 99
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.36 E-value=5.2e-13 Score=160.26 Aligned_cols=48 Identities=31% Similarity=0.503 Sum_probs=43.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHHHHHHHH
Q 004004 714 VGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 IGE~G~nLSGGQKQRIaLARAly~~ad--I~LLDDp~SALDa~t~~~If~ 761 (779)
.+..-.+|||||||||+|||||.++|+ +|||||||++||++..+.+++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS 422 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH
Confidence 455667999999999999999999995 999999999999999998876
No 100
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=4.5e-14 Score=157.74 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=82.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCC-eEEEc-------Ce
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA-AIKVH-------GK 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~-~I~i~-------g~ 660 (779)
..|+++|+++.|+. .++++ +++|+| +|+|++|||||||+++|.|...+..|. .+.++ ..
T Consensus 10 ~~l~~~~l~~~y~~------~~vl~-~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR------KSVKR-GFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT------TTCC--CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE
T ss_pred CcEEEEecceeECC------EEEec-CCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee
Confidence 35889999999864 46888 999987 999999999999999999988643330 11111 24
Q ss_pred EEEEccccccC-CCcHHHHhccCCCCCH-HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 004004 661 KAYVPQSSWIQ-TGTIRENILFGKDMRQ-SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (779)
Q Consensus 661 iayV~Q~pwI~-ngTIreNIlfG~~~d~-~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~ 738 (779)
++|++|++-++ +-||.||+.+|...+. +.++.+.+ .++ ..++++++||++||||+++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~------~i~--------------~~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID------YID--------------SKFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC-----------CHHHHH------HHH--------------HHHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhccchhhHHHHHH------HHH--------------HHHHHHHHHHHHHHHHhccC
Confidence 78999988775 7899999999875432 12222221 221 13456678899999999999
Q ss_pred CC---EEEEeCCC-CCcCHHH
Q 004004 739 SD---VYIFDDPF-SAVDAHT 755 (779)
Q Consensus 739 ad---I~LLDDp~-SALDa~t 755 (779)
|+ ++++|||| +++|+..
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHH
T ss_pred CCeeEEEEEecCcccCCCHHH
Confidence 99 99999999 5999866
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=2.9e-14 Score=153.09 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred eeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc-ccCCCCCeEEEc----------CeEEE
Q 004004 595 AGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVH----------GKKAY 663 (779)
Q Consensus 595 n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe-~~~~~G~~I~i~----------g~iay 663 (779)
|++..|.. ..+++ +++|+| +|+|++|+|||||++.|.|. ..+.+| +.++ ..++|
T Consensus 3 ~l~~~~~~------~~~l~-~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g--i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 3 NLPNQVHR------KSVKK-GFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV--ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEE
T ss_pred CCcceECC------EEEEc-CCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC--cccCCcccCCcceEeeEEE
Confidence 55666653 45788 999988 99999999999999999997 777776 2221 24688
Q ss_pred Ecccccc-CCCcHHHHhccCCCCC-HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 004004 664 VPQSSWI-QTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV 741 (779)
Q Consensus 664 V~Q~pwI-~ngTIreNIlfG~~~d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI 741 (779)
++|++-. .+-||.||..+|...+ +++++++.+. +.+..+ ..-.++|||||||+++|||+. +
T Consensus 68 ~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 68 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EEC---CCEEEEEEEEC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----E
T ss_pred EecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----e
Confidence 9987654 4568999998875432 1333333332 111111 112468999999999999984 9
Q ss_pred EEEeCCCCC-cCHHH
Q 004004 742 YIFDDPFSA-VDAHT 755 (779)
Q Consensus 742 ~LLDDp~SA-LDa~t 755 (779)
+++|||+++ ||+..
T Consensus 131 l~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 131 FYFISPFGHGLKPLD 145 (301)
T ss_dssp EEEECSSSSSCCHHH
T ss_pred eeeecCcccCCCHHH
Confidence 999999985 99976
No 102
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.32 E-value=2.2e-12 Score=156.78 Aligned_cols=132 Identities=15% Similarity=0.027 Sum_probs=88.0
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHH--------hccccCCCCCeEEEcCe
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSI--------LGEIPRISGAAIKVHGK 660 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~i--------LGe~~~~~G~~I~i~g~ 660 (779)
..+.++++...+-... ...+++++ |++|++++|+.++|+||+||||||+++.+ .|.+-|.++ ..
T Consensus 630 ~~i~i~~~rHP~le~~-~~~~~v~n-disl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~-~~----- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQ-DEIAFIPN-DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AE----- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC---CCCCCE-EEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE-EE-----
T ss_pred cceEeecCccchhhhc-CCceeecc-cceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc-cc-----
Confidence 4588887654332210 12357888 99999999999999999999999999999 554444333 11
Q ss_pred EEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH--ccC
Q 004004 661 KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSN 738 (779)
Q Consensus 661 iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl--y~~ 738 (779)
++.+ |.| +...++.+++ -.++|+|++++..+|+++ ..+
T Consensus 702 ~~~~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 702 VSIV------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp EECC------------SEE--------------EEECC-----------------------CHHHHHHHHHHHHHHHCCT
T ss_pred chHH------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHHHHHHHhccC
Confidence 1111 011 1111111111 135899999999999999 999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHhHHH
Q 004004 739 SDVYIFDDPFSAVDAHTGTHLFKARTFSLF 768 (779)
Q Consensus 739 adI~LLDDp~SALDa~t~~~If~~~i~g~L 768 (779)
|+++|||||++++|+..+..|....+..+.
T Consensus 742 ~sLlLLDEp~~GlD~~~~~~i~~~il~~l~ 771 (934)
T 3thx_A 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIA 771 (934)
T ss_dssp TCEEEEESCSCSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776655443
No 103
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.31 E-value=1.6e-14 Score=146.19 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE---------cCeEEEEccccccCC-CcHHH
Q 004004 608 KKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---------HGKKAYVPQSSWIQT-GTIRE 677 (779)
Q Consensus 608 ~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i---------~g~iayV~Q~pwI~n-gTIre 677 (779)
..++++ | .+|++|+.++|+||+|||||||+++|.|.++...+ .+.+ ...++|++|++..|. -|+++
T Consensus 8 ~~~~~~-~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~-~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 8 TKPTAR-G--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHF-SVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEE-CCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CCcCCC-C--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEE-cccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 467888 7 89999999999999999999999999999863222 1111 124889999987654 34556
Q ss_pred Hhcc-----C--C--CCCHHHHHHHHHHc-cchHHHhhccCCCCccccCCCCCCChHHHHHHHHHH---HHccCCCEEEE
Q 004004 678 NILF-----G--K--DMRQSFYEEVLEGC-ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR---AVYSNSDVYIF 744 (779)
Q Consensus 678 NIlf-----G--~--~~d~~~y~~vl~ac-~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR---Aly~~adI~LL 744 (779)
|+.. + . ..+.+..++.++.. .+ .. ...+.|.+.++-..++ |+..+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~-------------~~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPV-------------LI---EVDLAGARAIKKTMPEAVTVFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCE-------------EE---ECCHHHHHHHHHHCTTSEEEEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeE-------------EE---EeCHHHHHHHHHhcCCcEEEEEECCCHHHH
Confidence 6532 2 1 01122223322221 00 00 1234444444444444 88899999999
Q ss_pred eCCCCCc----CHHHHHHHHH
Q 004004 745 DDPFSAV----DAHTGTHLFK 761 (779)
Q Consensus 745 DDp~SAL----Da~t~~~If~ 761 (779)
||||+++ |+.+.+++.+
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~ 168 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDT 168 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 9999998 6666666543
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.30 E-value=1.2e-12 Score=143.43 Aligned_cols=119 Identities=22% Similarity=0.226 Sum_probs=76.9
Q ss_pred eeeEEEeccccccCCCcccccCCcE-------EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcc
Q 004004 594 EAGEYAWDAREENFKKPTIKLTDKM-------KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ 666 (779)
Q Consensus 594 ~n~sFsw~~~~~~~~~~~L~~~inl-------~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q 666 (779)
.++++.+.+ ...+.|+ ++.+ ..++|+.++|+||+|||||||+++|+|++++.+|+.|..
T Consensus 92 ~~~~iR~~~----~~~~~l~-~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t--------- 157 (356)
T 3jvv_A 92 AGAVFRTIP----SKVLTME-ELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT--------- 157 (356)
T ss_dssp EEEEEEEEC----CSCCCTT-TTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE---------
T ss_pred cEEEEEECC----CCCCCHH-HcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE---------
Confidence 356666654 2346677 7665 778999999999999999999999999999874415421
Q ss_pred ccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 667 ~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
+.|++-+..+.. .+. +. +.++|... ++-.+ +||||+.+|||++++||
T Consensus 158 --------~ed~~e~~~~~~---------~~~----v~------q~~~~~~~--~~~~~----~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 158 --------IEDPIEFVHESK---------KCL----VN------QREVHRDT--LGFSE----ALRSALREDPDIILVGE 204 (356)
T ss_dssp --------EESSCCSCCCCS---------SSE----EE------EEEBTTTB--SCHHH----HHHHHTTSCCSEEEESC
T ss_pred --------ccCcHHhhhhcc---------ccc----ee------eeeecccc--CCHHH----HHHHHhhhCcCEEecCC
Confidence 112221111000 000 00 12233322 22222 99999999999999999
Q ss_pred CCCCcCHHHHHHHHHH
Q 004004 747 PFSAVDAHTGTHLFKA 762 (779)
Q Consensus 747 p~SALDa~t~~~If~~ 762 (779)
|+ |.++.+.+.+.
T Consensus 205 p~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 205 MR---DLETIRLALTA 217 (356)
T ss_dssp CC---SHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHH
Confidence 99 88887665554
No 105
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.29 E-value=1.3e-12 Score=158.39 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=89.4
Q ss_pred ccEEEeeeEEEeccc-cccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-CCCCCeEEEcCeEEEEcc
Q 004004 589 VAIDIEAGEYAWDAR-EENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHGKKAYVPQ 666 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~-~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-~~~G~~I~i~g~iayV~Q 666 (779)
..+.++++.-..=.. -...+.++++ |++|++++|+.++|+||+|||||||++++.+..- ...| . +||+
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~n-dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g-~--------~vpa 708 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPN-NTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG-S--------YVPA 708 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCE-EEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT-C--------CBSS
T ss_pred CcEEEEeccchhhhhhhccCCceecc-cccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC-c--------cccc
Confidence 357777654321000 0012367889 9999999999999999999999999999865321 1112 1 1222
Q ss_pred ccccCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 004004 667 SSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (779)
Q Consensus 667 ~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDD 746 (779)
+..-. ++-++| +...++.+++. .+-.++|+|++|+..++|+ ..+|+++||||
T Consensus 709 ~~~~i--~~~d~i--------------~~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~~p~LlLLDE 760 (918)
T 3thx_B 709 EEATI--GIVDGI--------------FTRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-ATSQSLVILDE 760 (918)
T ss_dssp SEEEE--ECCSEE--------------EEEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEES
T ss_pred hhhhh--hHHHHH--------------HHhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeC
Confidence 11000 000111 00111122221 2235789999999999999 79999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhHHHH
Q 004004 747 PFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 747 p~SALDa~t~~~If~~~i~g~L~ 769 (779)
|++++|+..+..+....+..+.+
T Consensus 761 P~~GlD~~~~~~i~~~il~~L~~ 783 (918)
T 3thx_B 761 LGRGTSTHDGIAIAYATLEYFIR 783 (918)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998776655443
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=3.2e-13 Score=134.06 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=80.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-----------EEEEccccccCCCcHHHHhccCCCCCH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-----------KAYVPQSSWIQTGTIRENILFGKDMRQ 687 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-----------iayV~Q~pwI~ngTIreNIlfG~~~d~ 687 (779)
.+++|+.++|+||+|||||||+++|.|. +..| .|.++|. ++|++|++. .+.|++||+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g-~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVP-KVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSC-EEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCC-eEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHHH---
Confidence 4789999999999999999999999998 5678 8888762 466777654 45678888754210
Q ss_pred HHHHHHHHHccchHHHhhccC--CCCc--cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 688 SFYEEVLEGCALNQDIEMWAD--GDLS--VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~--Gd~T--~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
.+ .+ .+-..-++.+.. +.+. ..+.+...+|+||+||+++||++.++|+++ +|+...+.+++
T Consensus 78 -~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 78 -RY---AK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp -HH---HH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred -HH---hc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 00 000000000000 0000 013345679999999999999999999876 47766666554
No 107
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.29 E-value=1.2e-12 Score=143.13 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=101.6
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeE----EEE
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----AYV 664 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~i----ayV 664 (779)
..++.+++++.|+. ...+++ ++ |+|.+|++++|+||+|||||||+++|.|..++..| .+.+.|.- ...
T Consensus 44 ~~i~~~~l~~~~~t-----g~~ald-~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g-~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----GVRAID-GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII-VLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECC-----SCHHHH-HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHH
T ss_pred CCeeecccceecCC-----CCEEEE-ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE-EEEEecccHHHHHHH
Confidence 35778889888863 246788 99 99999999999999999999999999999999988 77766521 000
Q ss_pred ccccccCCCcHHHHhccCCCC---CHHHHHHHHHHccchHHHhhccCCCCc-cccCCCCCCChHHHHHHHHHHHHccCCC
Q 004004 665 PQSSWIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLS-VVGERGINLSGGQKQRIQLARAVYSNSD 740 (779)
Q Consensus 665 ~Q~pwI~ngTIreNIlfG~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T-~IGE~G~nLSGGQKQRIaLARAly~~ad 740 (779)
-+. +..+..+..+.+.... ..+++.....++.+.+.+.. .|.+. .+-+.-.+||+|| ||+++| ..+|+
T Consensus 116 i~~--~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~ 187 (347)
T 2obl_A 116 LAL--LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPD 187 (347)
T ss_dssp HTT--SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCC
T ss_pred HHh--hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCC
Confidence 000 0011111222222222 13566666666766554432 23221 1123456899999 999999 58888
Q ss_pred EEEEeCCCCCcCHHHHHHHHH
Q 004004 741 VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 741 I~LLDDp~SALDa~t~~~If~ 761 (779)
+ ++++|+.+...+.+
T Consensus 188 ~------t~Gldp~~~~~l~~ 202 (347)
T 2obl_A 188 V------RGGFPPSVFSSLPK 202 (347)
T ss_dssp C------BTTBCHHHHHHHHH
T ss_pred c------ccCCCHHHHHHHHH
Confidence 7 99999999877654
No 108
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.27 E-value=3.9e-12 Score=135.62 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=77.2
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhcc---CCCC-
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF---GKDM- 685 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlf---G~~~- 685 (779)
+.|+ ++++.+++|++++|+||+|||||||++.|+|.+.+.+|. .+.|++.+.- ...++..+.. +.++
T Consensus 23 ~~Ld-~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~------~v~~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 23 TGIN-DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK------KVGLAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp TTHH-HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC------CEEEEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHH-HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC------eEEEEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 4688 999999999999999999999999999999999988772 3344433320 0112222211 1111
Q ss_pred ----------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCCCc
Q 004004 686 ----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ-KQRIQLARAVYSNSDVYIFDDPFSAV 751 (779)
Q Consensus 686 ----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQ-KQRIaLARAly~~adI~LLDDp~SAL 751 (779)
+++.+++.++.. ++.. .-.+.+...++|.+| +||+. |+|+..+|+++++|||++.+
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~-----l~~~----~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDEL-----FGND----TFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHH-----HSSS----CEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred hccccccCCCCHHHHHHHHHHH-----hccC----CEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 112222222211 1111 111333334689999 78887 99999999999999999944
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.27 E-value=1.5e-12 Score=132.61 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=67.1
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHcc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~ 698 (779)
-+++|++++|+||+|||||||++.|+|.+.+..| ....+|.+.|+..+.. .+.++...+.+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~-~g~~~~~~i~~~~~~~---------------~~~~~i~~~~~~~~ 84 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPE-EGGLNGSVIWIDTENT---------------FRPERIREIAQNRG 84 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGG-GTCCSCEEEEEESSSC---------------CCHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccc-cCCCCCEEEEEECCCC---------------CCHHHHHHHHHHcC
Confidence 5899999999999999999999999997766433 2223344444443321 12233333343333
Q ss_pred chHH--HhhccCCCCccccCCCCCCC-hHHHHHHHHHHHHcc-------CCCEEEEeCCCCCcCHH
Q 004004 699 LNQD--IEMWADGDLSVVGERGINLS-GGQKQRIQLARAVYS-------NSDVYIFDDPFSAVDAH 754 (779)
Q Consensus 699 L~~d--i~~Lp~Gd~T~IGE~G~nLS-GGQKQRIaLARAly~-------~adI~LLDDp~SALDa~ 754 (779)
+..+ .+.+- + ....+ +.|++++..++++.. +|+++++|||++.+|++
T Consensus 85 ~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 85 LDPDEVLKHIY------V---ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp SCHHHHHHTEE------E---EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred CCHHHHhhcEE------E---EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 3221 11100 0 01122 334444666666655 99999999999999984
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.26 E-value=6.1e-12 Score=133.11 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=83.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE------cCeEEEEccccccCCCcHHHHh-ccCCCCCHHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV------HGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYE 691 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i------~g~iayV~Q~pwI~ngTIreNI-lfG~~~d~~~y~ 691 (779)
-+++|+.++|+||+|||||||+..+++.+. .| .+.. .+.+.|++.+.-. ..+++++ .+|...++.+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g-~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~ 100 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GG-PDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQ 100 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TC-CCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cC-CCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhh
Confidence 378999999999999999999999998765 34 3211 3567888766532 2333333 234455555555
Q ss_pred HHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CcCHHHH
Q 004004 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS--AVDAHTG 756 (779)
Q Consensus 692 ~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S--ALDa~t~ 756 (779)
++++.+.+.+ ..+.....||+||+||+ |++..+|+++++|||++ ++|.+..
T Consensus 101 ~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~ 153 (279)
T 1nlf_A 101 AVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENAS 153 (279)
T ss_dssp HHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred hccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCch
Confidence 5555554432 12345667999998875 78889999999999999 8897543
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.24 E-value=2.6e-12 Score=137.89 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------------eEEEEccccccCC-CcHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSWIQT-GTIRENILF 681 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------------~iayV~Q~pwI~n-gTIreNIlf 681 (779)
+|+.++|+||+|||||||++.|.|.++|.+| +|.+.| .++|++|++-++. .|++||+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999999999 888765 2678888875433 467777754
Q ss_pred CCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE--EEeCCCCCcC
Q 004004 682 GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY--IFDDPFSAVD 752 (779)
Q Consensus 682 G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~--LLDDp~SALD 752 (779)
+.. +.+. ..+-..++..+. +-.-++..+|||+++|||+..+|+.+ .|| |+++.|
T Consensus 180 ~~~----------~~~d--~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~ 235 (304)
T 1rj9_A 180 MKA----------RGYD--LLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN 235 (304)
T ss_dssp HHH----------HTCS--EEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH
T ss_pred HHh----------CCCC--EEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH
Confidence 310 0010 000001111111 11225677899999999999999944 444 444443
No 112
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.22 E-value=3.2e-11 Score=135.59 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 720 NLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 720 nLSGGQKQRIaLARAly----~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+||||||||++|||++. .+|+++|||||+|+||+...+.+.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~ 378 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA 378 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH
Confidence 49999999999999998 6899999999999999999988765
No 113
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.19 E-value=2.8e-12 Score=140.09 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=74.7
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-CCCCCeEEEc-C---------eEEEEccccccCC-CcHHHHh
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVH-G---------KKAYVPQSSWIQT-GTIRENI 679 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-~~~G~~I~i~-g---------~iayV~Q~pwI~n-gTIreNI 679 (779)
++ ++++. .+|+.++|+||+|+|||||+++|+|+.+ +..| .|... | .++|++|+++++. -|++|+-
T Consensus 206 l~-~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G-~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LK-PLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTN-DVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HH-HHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HH-HHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccC-CccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 45 55554 4799999999999999999999999999 9999 88775 4 5899999998865 4899975
Q ss_pred ccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 680 LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 680 lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
+.+ .+++...+. ..+.++.+ |....-...-.+|| ||+||++||+++
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 543 333322211 11112221 22223344557899 999999999986
No 114
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.18 E-value=2.4e-13 Score=159.31 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred cEEEeeeEEEeccccccCCCcccc---------cCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEEcC
Q 004004 590 AIDIEAGEYAWDAREENFKKPTIK---------LTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG 659 (779)
Q Consensus 590 ~I~~~n~sFsw~~~~~~~~~~~L~---------~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i~g 659 (779)
.++++|+++.|+.. ..+.++ .+.++++|. ++|+||+|||||||+++|.|...| .+| .|.++|
T Consensus 10 ~i~~~~l~~~~~~~----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG-~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEK----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSG-IVTRCP 81 (608)
T ss_dssp ----------CHHH----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSC
T ss_pred hhhhhhhhHHHHHH----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCC-eEEEcC
Confidence 57889999999741 122222 122466665 999999999999999999999877 789 887655
Q ss_pred ----------------eEEEEccccccCC-CcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCC
Q 004004 660 ----------------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (779)
Q Consensus 660 ----------------~iayV~Q~pwI~n-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLS 722 (779)
.++|++|++.++. .|++|||.+.. +.. |..+..+
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~-----------------~~~~~~~- 132 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAI-----------------AGEGMGI- 132 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHH-----------------HCSSSCC-
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHh-----------------cCCcccc-
Confidence 4789999987754 58888886421 000 0001111
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCC------CCCcCHHHHHHHHH
Q 004004 723 GGQKQRIQLARAVYSNSDVYIFDDP------FSAVDAHTGTHLFK 761 (779)
Q Consensus 723 GGQKQRIaLARAly~~adI~LLDDp------~SALDa~t~~~If~ 761 (779)
.++++.++++...+|+++|+||| |+++|+.+.+.+.+
T Consensus 133 --s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~ 175 (608)
T 3szr_A 133 --SHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKT 175 (608)
T ss_dssp --CSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHH
T ss_pred --chHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHH
Confidence 12444455555568999999999 99999988876643
No 115
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.15 E-value=8.2e-13 Score=152.44 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=52.5
Q ss_pred CcccccCCcE-EeeCCcEEEEEcCCCCChhHHHHH--HhccccCCCCCeEEEcC------------eEEEEccccc
Q 004004 609 KPTIKLTDKM-KIMKGSKVAVCGSVGSGKSSLLSS--ILGEIPRISGAAIKVHG------------KKAYVPQSSW 669 (779)
Q Consensus 609 ~~~L~~~inl-~I~~G~~vaIvG~sGSGKSTLL~~--iLGe~~~~~G~~I~i~g------------~iayV~Q~pw 669 (779)
.+.|+ ++++ .|++|+.++|+||+|||||||++. +.|..+|.+| .|.++| .++|++|++.
T Consensus 25 ~~~Ld-~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 25 IEGFD-DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-GVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CTTHH-HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-EEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred chhHH-HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-EEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 56899 9999 999999999999999999999999 6799998999 999987 2677777765
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.12 E-value=3.7e-11 Score=122.11 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=79.0
Q ss_pred cccccCCcE-EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHH
Q 004004 610 PTIKLTDKM-KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (779)
Q Consensus 610 ~~L~~~inl-~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~ 688 (779)
+.|+ ++.. .+++|+.++|+||+|||||||++.+++...+.+| .+ .|++.+. +.+
T Consensus 10 ~~Ld-~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v------~~~~~~~-----------------~~~ 64 (235)
T 2w0m_A 10 LDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PC------IYVTTEE-----------------SRD 64 (235)
T ss_dssp HHHH-GGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CE------EEEESSS-----------------CHH
T ss_pred hHHH-HHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eE------EEEEccc-----------------CHH
Confidence 4566 6666 7999999999999999999999999998877666 44 4444332 111
Q ss_pred HHHHHHHHccchHHHhhccCCCCccccC--------C-CCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCc--CHHH
Q 004004 689 FYEEVLEGCALNQDIEMWADGDLSVVGE--------R-GINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAV--DAHT 755 (779)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGE--------~-G~nLSGGQKQRIaLARAly~~ad--I~LLDDp~SAL--Da~t 755 (779)
+..+.+...+. +.+.+.....+.+.+ . -...|++|.++...+.+.-.+|+ ++++|||++.+ |+..
T Consensus 65 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~ 142 (235)
T 2w0m_A 65 SIIRQAKQFNW--DFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAM 142 (235)
T ss_dssp HHHHHHHHTTC--CCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGG
T ss_pred HHHHHHHHhcc--hHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHH
Confidence 11111111111 111111110010000 0 01349999998888877778999 99999999888 9876
Q ss_pred HHHHHH
Q 004004 756 GTHLFK 761 (779)
Q Consensus 756 ~~~If~ 761 (779)
.+.+++
T Consensus 143 ~~~~~~ 148 (235)
T 2w0m_A 143 ARKISY 148 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 117
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.12 E-value=6e-13 Score=148.73 Aligned_cols=108 Identities=19% Similarity=0.085 Sum_probs=72.6
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-----------------EEEE---------ccccccC--C
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-----------------KAYV---------PQSSWIQ--T 672 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-----------------iayV---------~Q~pwI~--n 672 (779)
++|++++|+||+|||||||+++|+|++++.+| .|.+.|. +++. .|+|-+. .
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g-~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vg 243 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSER-NILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVG 243 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS-CEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC-EEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEc
Confidence 78999999999999999999999999999999 7766431 2232 3666542 1
Q ss_pred -----CcHHHHhccCC----------CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 004004 673 -----GTIRENILFGK----------DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (779)
Q Consensus 673 -----gTIreNIlfG~----------~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~ 737 (779)
-|+++|+.++. ..+.....+.+...++.+.. ...+|||||+|| ||||+..
T Consensus 244 EiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR--LaraL~~ 308 (418)
T 1p9r_A 244 EIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR--LVRTLCP 308 (418)
T ss_dssp CCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE--EEEEECT
T ss_pred CcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH--hhhhhcC
Confidence 26667665421 01111111223333333221 345899999999 9999999
Q ss_pred CCCEEEE
Q 004004 738 NSDVYIF 744 (779)
Q Consensus 738 ~adI~LL 744 (779)
+|++..-
T Consensus 309 ~p~~~~~ 315 (418)
T 1p9r_A 309 DCKEPYE 315 (418)
T ss_dssp TTCEEEE
T ss_pred CCCccCC
Confidence 9998753
No 118
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.08 E-value=2.5e-12 Score=124.90 Aligned_cols=71 Identities=21% Similarity=0.157 Sum_probs=62.5
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe--------EEEEccccccCCCcHHHHhc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENIL 680 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~--------iayV~Q~pwI~ngTIreNIl 680 (779)
..+++ ++||++++|+.++++||+|||||||+++|.|.+ |.+| +|.++|. -.|++|++-+++-|+.||+.
T Consensus 20 ~~~l~-~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G-~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 20 KFAEI-LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG-NVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELE 96 (158)
T ss_dssp HHHHH-HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS-CCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHH
T ss_pred HHHHh-ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC-eEEECCEeeeeeccCCCcceeccccccCCcHHHHH
Confidence 35788 999999999999999999999999999999999 8999 8887762 12799999999999999994
Q ss_pred -cC
Q 004004 681 -FG 682 (779)
Q Consensus 681 -fG 682 (779)
+|
T Consensus 97 ~~g 99 (158)
T 1htw_A 97 FMG 99 (158)
T ss_dssp HST
T ss_pred HcC
Confidence 56
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.08 E-value=4.9e-11 Score=117.37 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=40.8
Q ss_pred CCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 717 RGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLARAl----y~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+..+||||||||++||||+ |++|+++|||||+++||+.+.+.+.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~ 109 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD 109 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH
Confidence 3467999999999999999 57789999999999999999988776
No 120
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.08 E-value=8.6e-11 Score=112.71 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhH
Q 004004 717 RGINLSGGQKQRIQLA------RAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFS 766 (779)
Q Consensus 717 ~G~nLSGGQKQRIaLA------RAly~~adI~LLDDp~SALDa~t~~~If~~~i~g 766 (779)
...+||||||||++|| ||+..+|+++||||||++||+++.+.+.+ .+..
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~ 108 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMER 108 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHH
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHH
Confidence 4578999999999876 99999999999999999999999887764 3443
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=1.7e-12 Score=141.53 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=100.0
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-----------
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g----------- 659 (779)
|+++|+++.|.. ..+++ ++++++++|+.++|+|++|||||||+++|.|.+.+.+| +|.+.|
T Consensus 30 ie~~~~~~~~~~------~~~l~-~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g-~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAAV------RDLID-AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH-KVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHHH------HHHHH-HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccCh------HHHHH-hCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC-EEEEEEEcCcccccccc
Confidence 444555555542 35788 99999999999999999999999999999999999999 887654
Q ss_pred ------eEEEEccccccCC----------C---cHHHHhc-c---CCC----------CCHHHHHHHHHHccc-------
Q 004004 660 ------KKAYVPQSSWIQT----------G---TIRENIL-F---GKD----------MRQSFYEEVLEGCAL------- 699 (779)
Q Consensus 660 ------~iayV~Q~pwI~n----------g---TIreNIl-f---G~~----------~d~~~y~~vl~ac~L------- 699 (779)
.++|++|++.+|. | +++|.+. + |.+ ..+.. +.+.+.+
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~ 178 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLP 178 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECS
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcC
Confidence 2688999888774 2 2333331 0 101 01111 1111110
Q ss_pred --hHHHhhccCC-----CCcccc--C--CCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 700 --NQDIEMWADG-----DLSVVG--E--RGINLSGGQKQRIQLARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 700 --~~di~~Lp~G-----d~T~IG--E--~G~nLSGGQKQRIaLARAly~------~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
.++++.+..+ +--.+. + ....+|+||+|+++.|+++.. +|+++. +||+|...-..+++.
T Consensus 179 ~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 179 GAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp CC------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred CCcccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 0111111111 000000 1 113579999999999999987 688876 999999877777654
No 122
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.05 E-value=8.8e-11 Score=141.01 Aligned_cols=116 Identities=12% Similarity=0.019 Sum_probs=74.9
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-CCCCCeEEEc---CeEEEEccccccCC-CcHHHHhccCC
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVH---GKKAYVPQSSWIQT-GTIRENILFGK 683 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-~~~G~~I~i~---g~iayV~Q~pwI~n-gTIreNIlfG~ 683 (779)
.++++ |++|+ ++|+.++|+||+|||||||+++|.|... ...| .. +. ..++++.| +|. -++.||+..|
T Consensus 595 ~~vln-disl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G-~~-vpa~~~~i~~~~~---i~~~~~~~d~l~~~- 666 (800)
T 1wb9_A 595 PFIAN-PLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG-SY-VPAQKVEIGPIDR---IFTRVGAADDLASG- 666 (800)
T ss_dssp CCCCE-EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT-CC-BSSSEEEECCCCE---EEEEEC---------
T ss_pred ceeee-ccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC-cc-cchhcccceeHHH---HHhhCCHHHHHHhh-
Confidence 56888 99999 9999999999999999999999999743 2344 21 11 12344433 111 1233333211
Q ss_pred CCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q 004004 684 DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKAR 763 (779)
Q Consensus 684 ~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~~~ 763 (779)
-.++|+|+++ ++.+.....+|+++|||||++++|+..+..+....
T Consensus 667 ----------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~l 711 (800)
T 1wb9_A 667 ----------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWAC 711 (800)
T ss_dssp -------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHH
T ss_pred ----------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 1245777764 44444558999999999999999998888775555
Q ss_pred HhHH
Q 004004 764 TFSL 767 (779)
Q Consensus 764 i~g~ 767 (779)
+..+
T Consensus 712 l~~l 715 (800)
T 1wb9_A 712 AENL 715 (800)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.04 E-value=3.8e-12 Score=132.09 Aligned_cols=132 Identities=16% Similarity=0.144 Sum_probs=81.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHh---ccccCCCCCeEEEcC---------eEEEEcccccc-CCCcHHHHhcc-------
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSIL---GEIPRISGAAIKVHG---------KKAYVPQSSWI-QTGTIRENILF------- 681 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iL---Ge~~~~~G~~I~i~g---------~iayV~Q~pwI-~ngTIreNIlf------- 681 (779)
++++++|+||+|||||||+++|. |...+..| ++..+| .+.++.|++.+ ...|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG-HFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH-HHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH-HHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999 99888888 776543 13445666554 34578888853
Q ss_pred ------CCCCCHHHHHHHHHHccch--HHHhhccCCCCccc-cCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CC
Q 004004 682 ------GKDMRQSFYEEVLEGCALN--QDIEMWADGDLSVV-GERGINLSGGQKQRIQLARAV-YSNSDVYIFD----DP 747 (779)
Q Consensus 682 ------G~~~d~~~y~~vl~ac~L~--~di~~Lp~Gd~T~I-GE~G~nLSGGQKQRIaLARAl-y~~adI~LLD----Dp 747 (779)
|.+.+.++.+...+....+ -.++.=|+-....+ ..+...||| |+ ||+ +.+|++++|| ||
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP 177 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEP 177 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCB
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccc
Confidence 1122222211111111100 00000000000111 223457898 66 899 9999999999 99
Q ss_pred CCCcCHHHHHHHHH
Q 004004 748 FSAVDAHTGTHLFK 761 (779)
Q Consensus 748 ~SALDa~t~~~If~ 761 (779)
|+++|..+.+.+.+
T Consensus 178 ~~~ld~~~~~~i~~ 191 (246)
T 2bbw_A 178 LVQQEDDKPEAVAA 191 (246)
T ss_dssp CBCCGGGSHHHHHH
T ss_pred cccCCCCcHHHHHH
Confidence 99999988776554
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.99 E-value=5.7e-11 Score=121.46 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=66.9
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccC--CCCCeEEEcC---------eEEEEccccccCCCc-H----HHHhc
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG---------KKAYVPQSSWIQTGT-I----RENIL 680 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~--~~G~~I~i~g---------~iayV~Q~pwI~ngT-I----reNIl 680 (779)
.-..++|++++|+||||||||||+++|+|.++| ..| .|.+.+ .++|++|++-.|... + .||+.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 345789999999999999999999999999985 678 777654 267888877665542 2 35554
Q ss_pred cCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
+...+ .|-.+++ ++.+...++++||| ||+...+.+.
T Consensus 89 ~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 89 VFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp ETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHH
T ss_pred HHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHH
Confidence 32110 0101111 23334446999999 9999999887
Q ss_pred HH
Q 004004 761 KA 762 (779)
Q Consensus 761 ~~ 762 (779)
+.
T Consensus 125 ~~ 126 (219)
T 1s96_A 125 QK 126 (219)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.97 E-value=1.5e-09 Score=109.52 Aligned_cols=102 Identities=21% Similarity=0.175 Sum_probs=68.9
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHcc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~ 698 (779)
-+++|++++|+||+|||||||++.+++ + .| +.+.|++.+.- .+.++..+..+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~------~~v~~i~~~~~---------------~~~~~~~~~~~~~~ 70 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--L--SG------KKVAYVDTEGG---------------FSPERLVQMAETRG 70 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--H--HC------SEEEEEESSCC---------------CCHHHHHHHHHTTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--H--cC------CcEEEEECCCC---------------CCHHHHHHHHHhcC
Confidence 588999999999999999999999999 2 23 24556554431 23344444444333
Q ss_pred chH--HHhhccCCCCccccCCCCCCChH--HHHHHHHHHHHccC-CCEEEEeCCCCCcCHHH
Q 004004 699 LNQ--DIEMWADGDLSVVGERGINLSGG--QKQRIQLARAVYSN-SDVYIFDDPFSAVDAHT 755 (779)
Q Consensus 699 L~~--di~~Lp~Gd~T~IGE~G~nLSGG--QKQRIaLARAly~~-adI~LLDDp~SALDa~t 755 (779)
+.. ..+.+. + ..+|++ |+|+++.||++.++ |+++++|||++.+|...
T Consensus 71 ~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 71 LNPEEALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp CCHHHHHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred CChHHHhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 321 111111 1 123444 47899999999986 99999999999999743
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.97 E-value=6.2e-12 Score=135.88 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc--------cCCCCCeEEEcCe----------------------------EEEE---
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI--------PRISGAAIKVHGK----------------------------KAYV--- 664 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~--------~~~~G~~I~i~g~----------------------------iayV--- 664 (779)
+.++|+|++|||||||++.|+|.. .+..| +|.++|. ++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G-~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCC-SCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCc-ccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 589999999999999999999997 67889 8877652 3455
Q ss_pred ccccc-cCCCcHHHHhccCCCCCH-HHH---HHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 665 PQSSW-IQTGTIRENILFGKDMRQ-SFY---EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 665 ~Q~pw-I~ngTIreNIlfG~~~d~-~~y---~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
+|++- .++.++.||+.++.|..- ..+ .+.-+...+..-+... +..+ .-++-.+||||||||...+|+++.++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~v-d~~~--~~~~~~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALV-DAVH--ADEQMNQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEE-ETTT--HHHHHHHCHHHHHHHHTCSEEEEECT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEE-EHHH--HHHHHhhchHHHHHHHhCCEEEEECc
Confidence 57765 478899999998865210 111 1111111121111100 0000 00001168999999999999999999
Q ss_pred CEEEEeCC
Q 004004 740 DVYIFDDP 747 (779)
Q Consensus 740 dI~LLDDp 747 (779)
|++ |||
T Consensus 161 dl~--de~ 166 (318)
T 1nij_A 161 DVA--GEA 166 (318)
T ss_dssp TTC--SCT
T ss_pred ccC--CHH
Confidence 976 888
No 127
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.96 E-value=1.3e-10 Score=124.66 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=76.7
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE---cC-------------eEEEEccccccC------CCcH
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HG-------------KKAYVPQSSWIQ------TGTI 675 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i---~g-------------~iayV~Q~pwI~------ngTI 675 (779)
+++.+|+.++++||+|||||||+++|+ ..++.+| +|.. +| .++|++|+|-++ +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G-~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQ-EVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCS-CC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCccc-ccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 456689999999999999999999999 9999999 8887 55 269999999764 5678
Q ss_pred HHHh--ccCC------------CC--CHHHHHHHHHHccchH-HHhhccCCCCccccCCCCCCChHHHHHHHHHH
Q 004004 676 RENI--LFGK------------DM--RQSFYEEVLEGCALNQ-DIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 676 reNI--lfG~------------~~--d~~~y~~vl~ac~L~~-di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLAR 733 (779)
||+ .|+. +. ...+.+++++..+|.+ ..+..| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 898 5641 11 2356778888888875 344433 468998888999997
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.91 E-value=1.2e-09 Score=123.20 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=88.1
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------------eEEEEcccccc-CCCc
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------------KKAYVPQSSWI-QTGT 674 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------------~iayV~Q~pwI-~ngT 674 (779)
++||++++|+.++|+|++|||||||++.|.|.+.+.+| +|.+.| .++|++|++-+ ...|
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 78899999999999999999999999999999999999 898853 26899998764 4578
Q ss_pred HHHHhccCCCCCHHHHHH-HHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC-C-CEEEEeCCCCCc
Q 004004 675 IRENILFGKDMRQSFYEE-VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-S-DVYIFDDPFSAV 751 (779)
Q Consensus 675 IreNIlfG~~~d~~~y~~-vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~-a-dI~LLDDp~SAL 751 (779)
++|||.++..- .|+- +++..++. + +-.++-.--+||+.++|++..+ | +++|..|++++.
T Consensus 364 V~e~l~~a~~~---~~DvVLIDTaGrl----------~-----~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 364 IFDAIQAAKAR---NIDVLIADTAGRL----------Q-----NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHT---TCSEEEECCCCSC----------C-----CHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCcc----------c-----hhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 89998775310 0000 00111110 0 0112222335889999988654 4 477777899887
Q ss_pred CHHHHHHHHHH
Q 004004 752 DAHTGTHLFKA 762 (779)
Q Consensus 752 Da~t~~~If~~ 762 (779)
|+....+-|++
T Consensus 426 ~al~~ak~f~~ 436 (503)
T 2yhs_A 426 NAVSQAKLFHE 436 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77655444544
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.91 E-value=5e-11 Score=122.88 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=32.7
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHh--ccccCCCCCeEEEcC
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSIL--GEIPRISGAAIKVHG 659 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iL--Ge~~~~~G~~I~i~g 659 (779)
.|++|+.++|+||+|||||||+++|+ |..++.+| .+.+.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~-~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP-GVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe-EEEEEc
Confidence 68999999999999999999999999 65455566 555443
No 130
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.90 E-value=1.7e-10 Score=139.66 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=72.8
Q ss_pred HHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCC--C---HHHHHHHHHH-ccchHHHhhccCCCCcc
Q 004004 640 LSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDM--R---QSFYEEVLEG-CALNQDIEMWADGDLSV 713 (779)
Q Consensus 640 L~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~--d---~~~y~~vl~a-c~L~~di~~Lp~Gd~T~ 713 (779)
..|.-+-+.+..| +|.++|.-- .-+.+-|+.||+.|.... . .....+..+. ....+.+..+ |....
T Consensus 385 ~~C~g~rl~~~~~-~V~i~G~~i-----~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~v--gL~~l 456 (916)
T 3pih_A 385 SVCGGRRLNREAL-SVKINGLNI-----HEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDV--GLEYL 456 (916)
T ss_dssp TTTCSCCBCTTGG-GEEETTEEH-----HHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTT--TCTTC
T ss_pred hhcccccCChHhc-CcEECCccH-----HHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHc--CCccc
Confidence 4444456778888 899988521 224556888888653221 1 1111111111 0001223322 33322
Q ss_pred -ccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHHHHHHHH
Q 004004 714 -VGERGINLSGGQKQRIQLARAVYSNSD--VYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 714 -IGE~G~nLSGGQKQRIaLARAly~~ad--I~LLDDp~SALDa~t~~~If~ 761 (779)
......+|||||||||+|||||.++|+ +|||||||++||++..+.+++
T Consensus 457 ~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 457 TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 345567899999999999999999887 999999999999999998876
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.85 E-value=1e-10 Score=134.02 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=79.2
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe----------EEEEccccccCC--CcHHH
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------KAYVPQSSWIQT--GTIRE 677 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~----------iayV~Q~pwI~n--gTIre 677 (779)
..++ ++++.+++|+.++|+||+|||||||+++|+|++++.+| .|.+.|. ++++.|++. .. .|+++
T Consensus 248 ~~l~-~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g-iitied~~E~~~~~~~~v~~~~r~~~-~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLA-YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK-VVSIEDTREIKLYHENWIAEVTRTGM-GEGEIDMYD 324 (511)
T ss_dssp HHHH-HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC-EEEEESSCCCCCCCSSEEEEECBCCS-SSCCBCHHH
T ss_pred HHHH-HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC-EEEEcCcccccCCCCCeEEEEeeccc-ccCCcCHHH
Confidence 3567 78899999999999999999999999999999999999 9988763 456666554 22 36776
Q ss_pred Hhc-----------cCCCCCHHHHHHHHHHccc-------------hHHHhh---ccCCCCcccc-------CCCCCCCh
Q 004004 678 NIL-----------FGKDMRQSFYEEVLEGCAL-------------NQDIEM---WADGDLSVVG-------ERGINLSG 723 (779)
Q Consensus 678 NIl-----------fG~~~d~~~y~~vl~ac~L-------------~~di~~---Lp~Gd~T~IG-------E~G~nLSG 723 (779)
++. +|.--++| ...++++..- .+-++. .|.|....+. .....+||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 653 23322333 4455555421 112222 2333333222 23346899
Q ss_pred HHHHHHHHH
Q 004004 724 GQKQRIQLA 732 (779)
Q Consensus 724 GQKQRIaLA 732 (779)
|||||.++|
T Consensus 404 G~~~R~~~a 412 (511)
T 2oap_1 404 NTRLRRTKE 412 (511)
T ss_dssp SCEEEEEEE
T ss_pred CCceEEEEE
Confidence 999998876
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.83 E-value=6.6e-10 Score=124.01 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=77.4
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCe-EEEcCeEEEEccccccCCCcHHHHhccC------CCCCH
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA-IKVHGKKAYVPQSSWIQTGTIRENILFG------KDMRQ 687 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~-I~i~g~iayV~Q~pwI~ngTIreNIlfG------~~~d~ 687 (779)
+++|+++.|+.++|+|++|||||||+++|.|..+...+.. ..+.-.+++|.|+. -.+-++.|+.-+. ..+..
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~ 227 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGL 227 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCH
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhH
Confidence 7999999999999999999999999999999844222200 00122344555443 0111222222221 11222
Q ss_pred HHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 004004 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~ 756 (779)
. +.+.++.|.. -+..+.-. .+.-.+||+||+||.++|||+..+|.|+++ +.+|....
T Consensus 228 ~-fl~~~era~~--lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 228 E-FLRHIARTRV--LLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp H-HHHHHTSSSE--EEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred H-HHHHHHHHHh--hhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 2 2222333321 01111100 122247999999999999999999999999 88888654
No 133
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.80 E-value=1.9e-11 Score=129.31 Aligned_cols=131 Identities=19% Similarity=0.124 Sum_probs=87.7
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEcccc-ccC-CCc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSS-WIQ-TGT 674 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~p-wI~-ngT 674 (779)
..++ ++++++++| ++++||+|||||||+++|.|+..+ | .+.++|. +++++|++ ..+ .-+
T Consensus 34 ~~l~-~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~-~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 34 DQFK-ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--N-FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHH-HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--E-EEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHH-HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--C-EEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 3577 899999999 999999999999999999999876 6 7777662 44555554 221 234
Q ss_pred HHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-----
Q 004004 675 IRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS----- 749 (779)
Q Consensus 675 IreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S----- 749 (779)
+.|||....+..... + .-...+ .+.+.-..|||||+||..+|+|+-.+|+++ |+++.
T Consensus 108 ~~Deid~~~~~r~~~--~---~~~~~~-----------~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR--E---TGASVR-----------VVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp EEETCTTTCC--------------CTT-----------HHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred eeehhhhhhcccCCC--c---chHHHH-----------HHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 455554322110000 0 000111 111122369999999999999999999974 99864
Q ss_pred -------CcCHHHHHHHHHHHH
Q 004004 750 -------AVDAHTGTHLFKART 764 (779)
Q Consensus 750 -------ALDa~t~~~If~~~i 764 (779)
.-|......|++...
T Consensus 170 d~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHHT
T ss_pred CeEEEeCCcCHHHHHHHHHHHH
Confidence 458888888888655
No 134
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.79 E-value=5.1e-09 Score=126.62 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=59.9
Q ss_pred cCCCcHHHHhccCCCC--CHH-------HHHHHHHHccchHHHhhccCCCCcc-ccCCCCCCChHHHHHHHHHHHHccC-
Q 004004 670 IQTGTIRENILFGKDM--RQS-------FYEEVLEGCALNQDIEMWADGDLSV-VGERGINLSGGQKQRIQLARAVYSN- 738 (779)
Q Consensus 670 I~ngTIreNIlfG~~~--d~~-------~y~~vl~ac~L~~di~~Lp~Gd~T~-IGE~G~nLSGGQKQRIaLARAly~~- 738 (779)
+.+.||.|++.|.... +++ ..+++.+... .++.+ |.+.. ....-.+|||||||||+||+|+.++
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl~---~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLG---FLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHH---HHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHHH---HHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 5678999999986554 221 1122222211 12221 22211 2345578999999999999999999
Q ss_pred -CCEEEEeCCCCCcCHHHHHHHHH
Q 004004 739 -SDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 739 -adI~LLDDp~SALDa~t~~~If~ 761 (779)
|++|||||||++||++..+.+++
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~ 564 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIE 564 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHH
Confidence 59999999999999999998876
No 135
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.78 E-value=2.8e-09 Score=128.40 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=60.1
Q ss_pred cCCCcHHHHhccCCCC--CHH-------HHHHHHHHccchHHHhhccCCCCcc-ccCCCCCCChHHHHHHHHHHHHccCC
Q 004004 670 IQTGTIRENILFGKDM--RQS-------FYEEVLEGCALNQDIEMWADGDLSV-VGERGINLSGGQKQRIQLARAVYSNS 739 (779)
Q Consensus 670 I~ngTIreNIlfG~~~--d~~-------~y~~vl~ac~L~~di~~Lp~Gd~T~-IGE~G~nLSGGQKQRIaLARAly~~a 739 (779)
+.+.||.|++.|.... +++ ..+++.+... .++.+ |.+.. ....-.+|||||||||+||+||.+++
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~---~L~~v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHH---HHHHH--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HhhhC--CCCccccCCccccCCHHHHHHHHHHHHHhhCC
Confidence 4578999999985432 231 1122222221 22222 22221 34455789999999999999999985
Q ss_pred --CEEEEeCCCCCcCHHHHHHHHH
Q 004004 740 --DVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 740 --dI~LLDDp~SALDa~t~~~If~ 761 (779)
++|||||||++||++..+.+++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~ 547 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIA 547 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHH
T ss_pred CCCEEEEeCcccCCCHHHHHHHHH
Confidence 9999999999999999988876
No 136
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.74 E-value=1.3e-10 Score=124.82 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=52.1
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEe-------------------eCCcEEEEEcCCCCChhHHHHHHhcccc-
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKI-------------------MKGSKVAVCGSVGSGKSSLLSSILGEIP- 648 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I-------------------~~G~~vaIvG~sGSGKSTLL~~iLGe~~- 648 (779)
..|+++|+++.|. +.++ ++++.+ ++|++++|+|++|||||||+++|.|.++
T Consensus 36 ~~i~~~~v~~~y~--------~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--------PLSR-LLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp TTCCHHHHHHTHH--------HHHH-HHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred cccchHhHHHHHH--------HHHH-HHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4588999998883 4677 888887 8999999999999999999999999998
Q ss_pred -CCCCCeEEE
Q 004004 649 -RISGAAIKV 657 (779)
Q Consensus 649 -~~~G~~I~i 657 (779)
|.+| +|.+
T Consensus 107 ~~~~G-~i~v 115 (308)
T 1sq5_A 107 WPEHR-RVEL 115 (308)
T ss_dssp STTCC-CEEE
T ss_pred CCCCC-eEEE
Confidence 8899 8877
No 137
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.73 E-value=1e-08 Score=105.01 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=60.7
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhcc--ccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe--~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~a 696 (779)
-+++|+.++|+||+|||||||++.+++. .++..|+ ..+.+.|+.-+. .++.++..+..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~---~~~~~~~i~~~~---------------~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG---GEGKAMYIDTEG---------------TFRPERLLAVAER 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTC---CSSEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCC---CCCeEEEEECCC---------------CcCHHHHHHHHHH
Confidence 4899999999999999999999999994 4442220 012334443222 1123333333333
Q ss_pred ccchHH--HhhccCCCCccccCCCCCCChHHHH-HHHHHHHHc--cCCCEEEEeCCCCCcCHH
Q 004004 697 CALNQD--IEMWADGDLSVVGERGINLSGGQKQ-RIQLARAVY--SNSDVYIFDDPFSAVDAH 754 (779)
Q Consensus 697 c~L~~d--i~~Lp~Gd~T~IGE~G~nLSGGQKQ-RIaLARAly--~~adI~LLDDp~SALDa~ 754 (779)
.+...+ ++.+ .+. ...++.+.. .+.-++++. .+|+++++|||++.+|+.
T Consensus 82 ~g~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 82 YGLSGSDVLDNV------AYA---RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp TTCCHHHHHHTE------EEE---ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred cCCCHHHHhhCe------EEE---ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 333210 1111 000 123444433 333344444 489999999999999986
No 138
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.72 E-value=2.9e-10 Score=115.74 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc---cCCCCCeEEE--------cC--------------eEEEEcccc------cc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI---PRISGAAIKV--------HG--------------KKAYVPQSS------WI 670 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~---~~~~G~~I~i--------~g--------------~iayV~Q~p------wI 670 (779)
.+..++|+|++||||||+.+.|.+.+ .+..| .+.. +| .++++.|++ .+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g-~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSG-AIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVIL 82 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH-HHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCc-ceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEE
Confidence 35789999999999999999999876 55566 5543 33 256777776 44
Q ss_pred CCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccc-cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 004004 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV-GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (779)
Q Consensus 671 ~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~I-GE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~ 748 (779)
...++.+|+. +++..+++..|+.++.+.....+.++.+ .++|.-++|+ .++++++.++|+.+++|+.
T Consensus 83 ~~~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 83 EGEDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TTEECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CCeeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 5556666653 5677888899999988887766666665 4678899998 5778889999999999875
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.70 E-value=8.7e-09 Score=110.48 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=71.8
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHH
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLE 695 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ 695 (779)
++++.++|+.++|+|++||||||++..|.+.+.+..| +|. ++..+++ .....|+ .+...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~------lv~~D~~--r~~a~eq-----------L~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVV------LAAADTF--RAAAIEQ-----------LKIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEE------EEEECTT--CHHHHHH-----------HHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-EEE------EEccccc--cHHHHHH-----------HHHHHH
Confidence 3455678999999999999999999999999988766 544 4444432 1111111 111122
Q ss_pred HccchHHHhhccCCCCccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRI---QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRI---aLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
..+ +| .+ ...||||.||+ +|+||+.+++|++|+|+|.. .++...+++
T Consensus 157 ~~g-------l~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 157 RVG-------AT-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp HHT-------CE-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred HcC-------Cc-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 111 11 11 13589999999 99999999999999999974 344444443
No 140
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.68 E-value=1.2e-08 Score=110.50 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=52.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------------EEEEccccccC-CCcHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------------KAYVPQSSWIQ-TGTIREN 678 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------------iayV~Q~pwI~-ngTIreN 678 (779)
+.++|+.++++||+||||||+++.|.|.+++.+| +|.+.|. +.|++|++-+. ..|++||
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 3478999999999999999999999999999999 8887652 45888877654 4678888
Q ss_pred hccC
Q 004004 679 ILFG 682 (779)
Q Consensus 679 IlfG 682 (779)
|.++
T Consensus 204 l~~~ 207 (328)
T 3e70_C 204 IQHA 207 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 141
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=5.8e-09 Score=111.66 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=63.9
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE---cC-------------eEEEEcccccc-----------
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HG-------------KKAYVPQSSWI----------- 670 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i---~g-------------~iayV~Q~pwI----------- 670 (779)
|++.+|+.++++||+|||||||+++|.|..+|.+| +|.+ +| .++|+.|+|-+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G-~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS-EVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccccc-ceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 56778999999999999999999999999999999 8887 44 26899999853
Q ss_pred ------CCCcHHHHhccCC----CCCHHHHHHHHHHccch-HHHhhcc
Q 004004 671 ------QTGTIRENILFGK----DMRQSFYEEVLEGCALN-QDIEMWA 707 (779)
Q Consensus 671 ------~ngTIreNIlfG~----~~d~~~y~~vl~ac~L~-~di~~Lp 707 (779)
.+-|+ ||+.|+. .-...+.+++++..+|. +-.+..|
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 35577 9999852 12346788999999995 4445554
No 142
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=2.8e-09 Score=114.12 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=52.7
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE---cCe------------EEEEccccccCC-----CcHHH
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV---HGK------------KAYVPQSSWIQT-----GTIRE 677 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i---~g~------------iayV~Q~pwI~n-----gTIre 677 (779)
+++.+|+.++|+|++|+|||||+++|+|+.++..| .|.. +|+ ++|+.|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G-~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN-EISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccccc-ceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 66789999999999999999999999999999999 8876 441 689999998764 578 9
Q ss_pred Hhc--cCC--------------C--CCHHHHHHHHHHccchH
Q 004004 678 NIL--FGK--------------D--MRQSFYEEVLEGCALNQ 701 (779)
Q Consensus 678 NIl--fG~--------------~--~d~~~y~~vl~ac~L~~ 701 (779)
|+. |.. . -...+.+++++..+|.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 993 320 1 11245667777777754
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.66 E-value=2.4e-08 Score=97.98 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=33.3
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
++++++|+.++++||+|+|||||++++.+++.+.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 577889999999999999999999999999987777
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.66 E-value=5e-08 Score=93.42 Aligned_cols=40 Identities=33% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
+|+.++|+||+|||||||++++.|++.+ +| . ++.|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g-~-----~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG-K-----NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT-C-----CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC-C-----cEEEEcHHH
Confidence 8999999999999999999999999987 56 2 345665544
No 145
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.65 E-value=9.1e-09 Score=118.38 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=40.7
Q ss_pred CCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHH
Q 004004 719 INL-SGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 719 ~nL-SGGQKQRIaLARAly~~a--dI~LLDDp~SALDa~t~~~If~~ 762 (779)
.+| |||||||++||||+..+| +++||||||++||..+...|.+.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~ 441 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ 441 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 456 999999999999999999 99999999999999999887763
No 146
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.50 E-value=1e-07 Score=105.01 Aligned_cols=44 Identities=30% Similarity=0.475 Sum_probs=40.1
Q ss_pred CCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 719 INLSGGQKQRI------QLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 719 ~nLSGGQKQRI------aLARAly~~-adI~LLDDp~SALDa~t~~~If~~ 762 (779)
.+||||||||+ ++|||+..+ |+++||||||++||+++...+.+.
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~ 329 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI 329 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH
Confidence 57999999988 668999999 999999999999999999988764
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.50 E-value=5e-10 Score=118.18 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=82.3
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEccccc-c-CCCc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW-I-QTGT 674 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~pw-I-~ngT 674 (779)
..++ ++++++++| ++|+||+|||||||+++|.++.. .| .+.++|. +.++.|++- . ..-+
T Consensus 63 ~~l~-~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~-~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFH-EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VP-FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHH-HTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CC-EEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHH-HcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CC-EEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4677 899999999 99999999999999999999986 67 7877652 345555542 1 1234
Q ss_pred HHHHh-ccCCCCC------HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 004004 675 IRENI-LFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (779)
Q Consensus 675 IreNI-lfG~~~d------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp 747 (779)
+.||| .++.... .+..++.+ ..+. ..|||||+||..+|+|.-.+|++ +|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHH---------HHHH-----------HHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred ehhhhHhhhcccccccCCcchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 45555 2221100 01111111 1111 24899999999999999999986 6766
Q ss_pred CC------------CcCHHHHHHHHHHHH
Q 004004 748 FS------------AVDAHTGTHLFKART 764 (779)
Q Consensus 748 ~S------------ALDa~t~~~If~~~i 764 (779)
+- .-|......|++...
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 42 236666666766443
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.49 E-value=6.8e-08 Score=107.26 Aligned_cols=111 Identities=19% Similarity=0.251 Sum_probs=67.3
Q ss_pred EeeCCcEEEEEcCCCCChhHHHH--HHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLS--SILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~--~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~a 696 (779)
-|++|++++|+||+|||||||++ ++.+..++..|+ -.+.+.|+.-+. .++.++..+..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg---~~~~viyid~E~---------------~~~~~rl~~~a~~ 235 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG---GEGKCLYIDTEG---------------TFRPVRLVSIAQR 235 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSSEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC---CCCcEEEEeCCC---------------ccCHHHHHHHHHH
Confidence 47899999999999999999999 456777765551 134555554332 1345666666666
Q ss_pred ccchHH--HhhccCCCCccccCCCCCCC-hHHHHHHHHHHHHc--cCCCEEEEeCCCCCcCHHHH
Q 004004 697 CALNQD--IEMWADGDLSVVGERGINLS-GGQKQRIQLARAVY--SNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 697 c~L~~d--i~~Lp~Gd~T~IGE~G~nLS-GGQKQRIaLARAly--~~adI~LLDDp~SALDa~t~ 756 (779)
.++..+ ++.+- +.. ..+ ..|.+++.-+++.. .+++++++|+|++.+|++..
T Consensus 236 ~gl~~~~vleni~------~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 236 FGLDPDDALNNVA------YAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp TTCCHHHHHHTEE------EEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred cCCChHhHhhcEE------Eec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 665432 11110 111 111 23455555444443 46999999999999997654
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.49 E-value=3.4e-08 Score=97.74 Aligned_cols=117 Identities=23% Similarity=0.386 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcccc-------------CCCCCeEEEcCeEEEEcccc-----------ccCCCcHHHH
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIP-------------RISGAAIKVHGKKAYVPQSS-----------WIQTGTIREN 678 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~-------------~~~G~~I~i~g~iayV~Q~p-----------wI~ngTIreN 678 (779)
|+.++|+||+|||||||+++|+|+++ |.+| .+ +| +.|.+|++ .+.++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~g-e~--~g-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 76 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG-EV--NG-KDYNFVSVDEFKSMIKNNEFIEWAQFSGN 76 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTT-CC--BT-TTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCC-cc--CC-eeeeecCHHHHHHHHhhcceeeEEEEece
Confidence 57899999999999999999999998 5666 43 33 34554443 3334444444
Q ss_pred hccCCCCCHHHHHHHHHHc---cch------HHHhh--------------ccCCCCccccCCCCCCChHHHHHHHHHHHH
Q 004004 679 ILFGKDMRQSFYEEVLEGC---ALN------QDIEM--------------WADGDLSVVGERGINLSGGQKQRIQLARAV 735 (779)
Q Consensus 679 IlfG~~~d~~~y~~vl~ac---~L~------~di~~--------------Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAl 735 (779)
. +|.+ .+..+++++.. -++ .-+.. -++-....+-+||..-....+||++-|++-
T Consensus 77 ~-yg~~--~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 77 Y-YGST--VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE 153 (186)
T ss_dssp E-EEEE--HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred e-ccCc--HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3 4433 45566666652 121 11111 013444556778988888999999999975
Q ss_pred c-----cCCCEEEEeC
Q 004004 736 Y-----SNSDVYIFDD 746 (779)
Q Consensus 736 y-----~~adI~LLDD 746 (779)
. ..+|.+|..|
T Consensus 154 ~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 154 LAYAETGAHDKVIVND 169 (186)
T ss_dssp -----CCCCSEEEECS
T ss_pred HHhhcccCCcEEEECc
Confidence 4 5678888877
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.1e-07 Score=103.31 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=58.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc-cccCCCCCeEEEcC-----------eEEEEccccccC-CCcHHHHhccCCCCCHHHHH
Q 004004 625 KVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG-----------KKAYVPQSSWIQ-TGTIRENILFGKDMRQSFYE 691 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLG-e~~~~~G~~I~i~g-----------~iayV~Q~pwI~-ngTIreNIlfG~~~d~~~y~ 691 (779)
.+.++||+|+||||+++++.| .+.+..| .+.++| .++|++|.+++. +++- .+. .+.+..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~ 110 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVY-RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGN-NDRIVIQ 110 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCC-C------------------CCEECSSEEEECCC----------CCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCC-eEEecceeecccccccceeeeecccceEEecHhh-----cCC-cchHHHH
Confidence 389999999999999999999 5788888 887764 367777877652 2110 011 1122233
Q ss_pred HHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q 004004 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK 761 (779)
Q Consensus 692 ~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If~ 761 (779)
+.++...-.. +.+..+ +||| +..+++++++|||++ +|..+...+.+
T Consensus 111 ~~i~~~~~~~-------~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~ 156 (354)
T 1sxj_E 111 ELLKEVAQME-------QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRR 156 (354)
T ss_dssp HHHHHHTTTT-------C----------------------------CCEEEEEECTTS-SCHHHHHHHHH
T ss_pred HHHHHHHHhc-------cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHH
Confidence 3333321111 111111 5677 778999999999999 99988766543
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.47 E-value=3e-07 Score=98.08 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=73.9
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHH
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL 694 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl 694 (779)
+++++ +|+.++++|++|+||||++..|.|.+.+..| +|.+ +..++. .....+ .+....
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-~v~l------~~~d~~--~~~~~~-----------ql~~~~ 149 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLL------VAADTQ--RPAARE-----------QLRLLG 149 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEE------EECCSS--CHHHHH-----------HHHHHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEE------ecCCcc--cHhHHH-----------HHHHhc
Confidence 67777 8999999999999999999999999988766 5544 444432 111111 111111
Q ss_pred HHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCcCHHHHHHH
Q 004004 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP-FSAVDAHTGTHL 759 (779)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp-~SALDa~t~~~I 759 (779)
+.. .+..+|.|. .-.-.+-||.+|+++..+++|++|+|+| ++++|...-..+
T Consensus 150 ~~~----~l~~~~~~~---------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 150 EKV----GVPVLEVMD---------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp HHH----TCCEEECCT---------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred ccC----CeEEEEcCC---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 111 122233222 1234456799999998899999999999 999998666554
No 152
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.45 E-value=1.3e-07 Score=94.19 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=73.6
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-------------eEEEEccccccCCC-cHHHHhccC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTG-TIRENILFG 682 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-------------~iayV~Q~pwI~ng-TIreNIlfG 682 (779)
|+++++|++++|+||+|||||||+++|.|.++. +.+.+ .++|++|++-.|.. +.++|+.+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAE-----IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH 75 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSS-----EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCC-----eEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEee
Confidence 467789999999999999999999999998752 22222 37899999876554 344444321
Q ss_pred -----CCC--CHHHHHHHHHHc----------cchHHHhhccCCCC------------ccccCCCCCCChHHHHHHHHHH
Q 004004 683 -----KDM--RQSFYEEVLEGC----------ALNQDIEMWADGDL------------SVVGERGINLSGGQKQRIQLAR 733 (779)
Q Consensus 683 -----~~~--d~~~y~~vl~ac----------~L~~di~~Lp~Gd~------------T~IGE~G~nLSGGQKQRIaLAR 733 (779)
..+ ..+..+++++.. ++..-.+..|+.+- ..+-+||..-....++|++-++
T Consensus 76 ~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~ 155 (205)
T 3tr0_A 76 ATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAR 155 (205)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHH
T ss_pred eeeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 111 234455555442 11111122222211 1123456555567789998887
Q ss_pred HHc---cCCCEEEEeC
Q 004004 734 AVY---SNSDVYIFDD 746 (779)
Q Consensus 734 Aly---~~adI~LLDD 746 (779)
... ..+|.++.+|
T Consensus 156 ~~~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 156 EEMAHYKEFDYLVVND 171 (205)
T ss_dssp HHHTTGGGCSEEEECS
T ss_pred HHHhcccCCCEEEECC
Confidence 654 5689888776
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.44 E-value=6.4e-10 Score=115.58 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=81.5
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEccccc-c-CCCc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW-I-QTGT 674 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~pw-I-~ngT 674 (779)
..++ ++++++++| ++|+||+|||||||+++|.++.. .| .+.++|. +.++.|++. . ..-+
T Consensus 39 ~~~~-~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~-~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFH-EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VP-FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHH-HTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CC-EEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHH-HcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CC-EEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4677 899999999 99999999999999999999886 67 7777652 234444432 1 1223
Q ss_pred HHHHh-ccCCCCC------HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 004004 675 IRENI-LFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (779)
Q Consensus 675 IreNI-lfG~~~d------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp 747 (779)
+.||| .++.... .+..++.+ ..+ -..|||||+||..+|+|.-.+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~l-----------l~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTL---------NQL-----------LVEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHH---------HHH-----------HHHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHH---------HHH-----------HHHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 44444 2221100 00111111 111 124789999999999999999986 7877
Q ss_pred CCC------------cCHHHHHHHHHHHH
Q 004004 748 FSA------------VDAHTGTHLFKART 764 (779)
Q Consensus 748 ~SA------------LDa~t~~~If~~~i 764 (779)
+-. -|......|++...
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 642 36667777776543
No 154
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.40 E-value=7.4e-08 Score=94.45 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=70.4
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE----------E---------EcCeEEEEccccc------
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI----------K---------VHGKKAYVPQSSW------ 669 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I----------~---------i~g~iayV~Q~pw------ 669 (779)
++++++.+| +++|+||+|||||||+.+|.+.+.+..| .. . ....|..+.|+|.
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA-KAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT-GGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc-cccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 778889999 9999999999999999999987766555 21 1 1125788888752
Q ss_pred ----cCCCcHHHH----h-ccCCCCCHHHHHHHHHHccchHH-HhhccCCCCccccCCCCCCChHHHHHH
Q 004004 670 ----IQTGTIREN----I-LFGKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQKQRI 729 (779)
Q Consensus 670 ----I~ngTIreN----I-lfG~~~d~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGE~G~nLSGGQKQRI 729 (779)
....++..+ . .-|.+...+++.+.++..++..| +..+++|..+.+- .+|+++|+|+
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~l~----~~~~~~r~~~ 162 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFI----KMSPLERRLL 162 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTTEECTTCTTHHH----HSCHHHHHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCEEEEcccHHHHH----hCCHHHHHHH
Confidence 111122111 1 11344567788888888888654 4455555554442 3566666654
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.37 E-value=6e-08 Score=96.07 Aligned_cols=132 Identities=22% Similarity=0.225 Sum_probs=72.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC-----------CCCCeEEEcCe-EEE--E---ccccccCCCcHHHHh------cc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPR-----------ISGAAIKVHGK-KAY--V---PQSSWIQTGTIRENI------LF 681 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~-----------~~G~~I~i~g~-iay--V---~Q~pwI~ngTIreNI------lf 681 (779)
+++|+|++|||||||++.+.|...+ .+| ++.++|. +.. . .|+-+ .+.+.... ++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~-~i~~~g~~~~~~i~Dt~g~~~~--~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-SIQVDGKTIKAQIWDTAGLERY--RAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE-EEEETTEEEEEEEEEECSCCSS--SCCCHHHHTTCCEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEE-EEEECCEEEEEEEEECCCCcch--hhhhHHHhhcCCEEEE
Confidence 7999999999999999999997654 356 7777774 221 1 12211 12222211 11
Q ss_pred C-CCCCHHHHHHHHHHccchHHHhhcc-CCC-CccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHH
Q 004004 682 G-KDMRQSFYEEVLEGCALNQDIEMWA-DGD-LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTH 758 (779)
Q Consensus 682 G-~~~d~~~y~~vl~ac~L~~di~~Lp-~Gd-~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~ 758 (779)
- ...+...++++.+.. +.+.... .+. --.++.+ ..|..-.+++...||++.+++++.++| +||+|.+.-..
T Consensus 108 v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWL---KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHH---HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHH
Confidence 1 111222222211100 0111000 000 0112221 122222234578899999999999999 99999999999
Q ss_pred HHHHHHh
Q 004004 759 LFKARTF 765 (779)
Q Consensus 759 If~~~i~ 765 (779)
+|+....
T Consensus 182 l~~~l~~ 188 (191)
T 1oix_A 182 AFQTILT 188 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.37 E-value=9.1e-08 Score=108.28 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=44.1
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
+.++ ++||+|++ +.++|+||+|||||||+++|.|.++|.+| +|.++|
T Consensus 18 ~~l~-~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g 64 (483)
T 3euj_A 18 NGFF-ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT-LLNFRN 64 (483)
T ss_dssp TTEE-EEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT-TCCCCC
T ss_pred cccc-ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC-EEEECC
Confidence 3588 99999999 99999999999999999999999999999 898876
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.35 E-value=2.7e-09 Score=115.91 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=54.8
Q ss_pred cccccCCcEEeeCC-------cEEEEEcCCCCChhHHHHHHhccc----cCCCCCeEEE-------------cCeEEEEc
Q 004004 610 PTIKLTDKMKIMKG-------SKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKV-------------HGKKAYVP 665 (779)
Q Consensus 610 ~~L~~~inl~I~~G-------~~vaIvG~sGSGKSTLL~~iLGe~----~~~~G~~I~i-------------~g~iayV~ 665 (779)
.+++ ++++.+++| +.++++||+|+|||||+++|.|++ .+++| .+.. .+.+.|++
T Consensus 32 ~~~~-~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg-~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 32 NVKK-KLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG-PVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp HHHH-HHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET-TTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHH-HHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec-hHhcCHHHHHHHHHHccCCCEEEEc
Confidence 4567 788888776 789999999999999999999998 66777 5532 24689999
Q ss_pred cccccCCCcHHHHhc
Q 004004 666 QSSWIQTGTIRENIL 680 (779)
Q Consensus 666 Q~pwI~ngTIreNIl 680 (779)
|..-+.. ++.|++.
T Consensus 110 E~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 110 EIHRLNK-AVEELLY 123 (334)
T ss_dssp TGGGCCH-HHHHHHH
T ss_pred chhhcCH-HHHHHHH
Confidence 9887765 7888774
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.32 E-value=5.7e-07 Score=95.93 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=67.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccch
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~ 700 (779)
++|+.++++|++||||||++..|.+.+.+.+| -++.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g-- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ-- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCCS--STTHHHHHHH-----------HHTTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCcc--cchHHHHHHH-----------HHHhcC--
Confidence 47999999999999999999999999988778 26888999884 4444444321 011111
Q ss_pred HHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 004004 701 QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG 756 (779)
Q Consensus 701 ~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~ 756 (779)
+| -... ..++..|.++||+ +++|++|+| |+++|....
T Consensus 162 -----l~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~ 198 (296)
T 2px0_A 162 -----AP----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDP 198 (296)
T ss_dssp -----CC----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSH
T ss_pred -----CC----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhH
Confidence 11 0011 1245578888876 999999999 889997544
No 159
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.30 E-value=1.5e-07 Score=94.44 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=44.1
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCC
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK 683 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~ 683 (779)
=++++|++++|+|++||||||+.+.|.+.++ | +.+++|++.++++ +|+.++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~--------~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---N--------CSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST---T--------EEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---C--------cEEEeCCccccCH---hHhhccc
Confidence 3577899999999999999999999999764 3 7899999999886 6776543
No 160
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.30 E-value=1.2e-07 Score=96.96 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=22.9
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHh-ccc
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-GEI 647 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iL-Ge~ 647 (779)
... ++||++++|++++|+||+|||||||+++|. |.+
T Consensus 16 ~~~-~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQG-PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccC-CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 455 899999999999999999999999999999 998
No 161
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.26 E-value=3.5e-09 Score=116.68 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=82.9
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE-c----C---eEEEEccccccCCCcHHHHhcc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-H----G---KKAYVPQSSWIQTGTIRENILF 681 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i-~----g---~iayV~Q~pwI~ngTIreNIlf 681 (779)
.+++ ++++.+++|+.++|+||+|||||||+++|.|+. +| .+.. . + .+++++|...+ +.|++.+
T Consensus 157 ~~l~-~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g-~~~~~~~~~~~~~~~lg~~~q~~~~----l~dd~~~ 227 (377)
T 1svm_A 157 DFLK-CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GG-KALNVNLPLDRLNFELGVAIDQFLV----VFEDVKG 227 (377)
T ss_dssp HHHH-HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CC-EEECCSSCTTTHHHHHGGGTTCSCE----EETTCCC
T ss_pred HHHH-hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CC-cEEEEeccchhHHHHHHHhcchhHH----HHHHHHH
Confidence 4678 899999999999999999999999999999964 67 6554 2 2 35667776543 3455544
Q ss_pred CCC----CCH-------HHHHHHHHH---ccchH----HH-hhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 004004 682 GKD----MRQ-------SFYEEVLEG---CALNQ----DI-EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVY 742 (779)
Q Consensus 682 G~~----~d~-------~~y~~vl~a---c~L~~----di-~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~ 742 (779)
..+ ... ..+...+.. ..+.. .+ ..++.| .+.++--.+++|.+||++.+.+++.+||++
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 332 100 111122110 00000 00 012222 234455678999999999998889999998
Q ss_pred E-EeCCCC
Q 004004 743 I-FDDPFS 749 (779)
Q Consensus 743 L-LDDp~S 749 (779)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 8 898876
No 162
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.25 E-value=6.6e-08 Score=100.63 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=62.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHh---ccccCCCCCeEE--------EcC--------------eEEEEcc------ccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSIL---GEIPRISGAAIK--------VHG--------------KKAYVPQ------SSW 669 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iL---Ge~~~~~G~~I~--------i~g--------------~iayV~Q------~pw 669 (779)
++|+.++|+||+||||||++++|. |...+.+| .+. .+| .+++++| ..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g-~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSG-AIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVI 103 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH-HHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC-ceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEE
Confidence 789999999999999999999999 99888888 776 333 3677774 467
Q ss_pred cCCCcHHHHhccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccC
Q 004004 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (779)
Q Consensus 670 I~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE 716 (779)
+.+.++.+||.. +...+.....+..+.+.......+..+++
T Consensus 104 l~~~~v~~~i~~------~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 104 LEGEDVSNEIRT------ETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp ETTEECTTGGGS------HHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred ECCeehhHHHHH------HHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 788888888752 34455555555555554443333333333
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.23 E-value=1e-07 Score=95.47 Aligned_cols=74 Identities=16% Similarity=0.374 Sum_probs=55.7
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhcccc-------------CCCCCeEEEcCe----------EEEEccccccCCC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-------------RISGAAIKVHGK----------KAYVPQSSWIQTG 673 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~-------------~~~G~~I~i~g~----------iayV~Q~pwI~ng 673 (779)
|+...+|++++|+||+|||||||+++|+++++ |..| + ++|. -..+.|+.+++.+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~g-E--~~G~~y~fvs~~~f~~~i~~~~fle~~ 89 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKS-E--EDGKEYHFISTEEMTRNISANEFLEFG 89 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTT-C--CTTSSCEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCC-e--eccccceeccHHHhhhhhhhhhhhhhh
Confidence 45566899999999999999999999999986 4455 3 3442 1235788999999
Q ss_pred cHHHHhccCCCCCHHHHHHHHHH
Q 004004 674 TIRENILFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 674 TIreNIlfG~~~d~~~y~~vl~a 696 (779)
++.+| .+|.+ .+..++++++
T Consensus 90 ~~~~n-~YGt~--~~~v~~~l~~ 109 (197)
T 3ney_A 90 SYQGN-MFGTK--FETVHQIHKQ 109 (197)
T ss_dssp EETTE-EEEEE--HHHHHHHHHT
T ss_pred hhhce-ecccc--hhhHHHHHhc
Confidence 99999 58865 4567777765
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.16 E-value=2.1e-07 Score=91.49 Aligned_cols=71 Identities=14% Similarity=0.352 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC-CCCCeEEE----------cCe-EE---------EEccccccCCCcHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKV----------HGK-KA---------YVPQSSWIQTGTIRENIL 680 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~-~~G~~I~i----------~g~-ia---------yV~Q~pwI~ngTIreNIl 680 (779)
+|++++|+||||||||||++.|++.+++ ..| .|.. +|. .- .++|..+++.+++.+| .
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~-~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n-~ 81 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAY-PIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDA-M 81 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEEC-CCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE-E
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEE-eeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCc-c
Confidence 6999999999999999999999999873 445 4432 221 11 2356778888898888 5
Q ss_pred cCCCCCHHHHHHHHHH
Q 004004 681 FGKDMRQSFYEEVLEG 696 (779)
Q Consensus 681 fG~~~d~~~y~~vl~a 696 (779)
+|.+ .+..++++++
T Consensus 82 yg~~--~~~i~~~l~~ 95 (180)
T 1kgd_A 82 YGTK--LETIRKIHEQ 95 (180)
T ss_dssp EEEE--HHHHHHHHHT
T ss_pred cccc--HHHHHHHHHC
Confidence 6654 4455666654
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=2.3e-06 Score=84.93 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHhHHHH
Q 004004 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKARTFSLFH 769 (779)
Q Consensus 729 IaLARAly~~adI~LLDDp~SALDa~t~~~If~~~i~g~L~ 769 (779)
...||++.+++++.++| +||+|.+.-..+|+.....+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHHHH
Confidence 45699999999999999 9999999999999876655444
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.14 E-value=2.5e-07 Score=108.36 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=87.6
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC--------eEEEEcccc------------
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KKAYVPQSS------------ 668 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g--------~iayV~Q~p------------ 668 (779)
..+++ ++++.+++|+.+.|+||+|+|||||+++|.|.+++..++.+.+++ .++||||..
T Consensus 47 ~~~l~-~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~ 125 (604)
T 3k1j_A 47 EHAVE-VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKA 125 (604)
T ss_dssp HHHHH-HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHH
T ss_pred hhhHh-hccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhh
Confidence 34677 889999999999999999999999999999999988843666643 477877654
Q ss_pred ----------cc-CCCcHHHHhccCCCCC-HHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 004004 669 ----------WI-QTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (779)
Q Consensus 669 ----------wI-~ngTIreNIlfG~~~d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly 736 (779)
|. -..++++|++.++.-. ...+... ......+-+..... + ......+|+|++||+..++...
T Consensus 126 ~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~-~----~~~~g~~~~g~~~~i~~g~~~~ 199 (604)
T 3k1j_A 126 KSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRH-D----PFQSGGLGTPAHERVEPGMIHR 199 (604)
T ss_dssp HHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECC-C----CC----CCCCGGGGEECCHHHH
T ss_pred ccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEe-c----hhhcCCccccccccccCceeee
Confidence 11 1223334443321100 0000000 00000011111100 0 0122359999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 737 SNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 737 ~~adI~LLDDp~SALDa~t~~~If 760 (779)
.++.+++|||+-. +++.+...+.
T Consensus 200 a~~gvL~LDEi~~-l~~~~q~~Ll 222 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-LSLKMQQSLL 222 (604)
T ss_dssp TTTSEEEETTGGG-SCHHHHHHHH
T ss_pred cCCCEEEEechhh-CCHHHHHHHH
Confidence 9999999999887 6876655443
No 167
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=3.2e-07 Score=101.41 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=75.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhc------------cccCCCCCeEEEcC-----------------eEEEEccccc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILG------------EIPRISGAAIKVHG-----------------KKAYVPQSSW 669 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLG------------e~~~~~G~~I~i~g-----------------~iayV~Q~pw 669 (779)
.+++|..++|+|++|+|||||+++|.| -.+|+.| .+.++| ...++.+.|-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G-~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA-KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE-EEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee-eeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 467899999999999999999999999 4468888 888876 2457778887
Q ss_pred cCCC-cHHHHhccCCCCCHHHHHHHHHHcc-chHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEe
Q 004004 670 IQTG-TIRENILFGKDMRQSFYEEVLEGCA-LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS--DVYIFD 745 (779)
Q Consensus 670 I~ng-TIreNIlfG~~~d~~~y~~vl~ac~-L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~a--dI~LLD 745 (779)
+..+ |..|+ +.. .+...++.|. +-.-++... + +.-..+||+. || |+.++|
T Consensus 95 l~~~~s~~e~------L~~-~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVG------LGN-AFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSS------SCH-HHHHHHTTCSEEEEEEECCC---T----TCSSCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHH------HHH-HHHHHHHHHHHHHHHHhccc---c----ceeeeecccc------------Ccchhhhhch
Confidence 6543 22222 111 2233333332 111111111 1 2223356653 88 999999
Q ss_pred CCCCCcCHHHHHHHHH
Q 004004 746 DPFSAVDAHTGTHLFK 761 (779)
Q Consensus 746 Dp~SALDa~t~~~If~ 761 (779)
||++..|...-++..+
T Consensus 149 eel~~~D~~~~~k~~~ 164 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLE 164 (392)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999988665443
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=2.3e-06 Score=93.84 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=73.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc-----------CCCCCeEEEcCe-------EEEEcccccc----CCCcHH-----H
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP-----------RISGAAIKVHGK-------KAYVPQSSWI----QTGTIR-----E 677 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~-----------~~~G~~I~i~g~-------iayV~Q~pwI----~ngTIr-----e 677 (779)
.++|+|++|+|||||++++.|... +..| .+.++|. .|++.|.|.- |..|.. |
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~-~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY-AIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEE-EEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE-EEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 499999999999999999999865 4557 7888774 2334433221 111211 3
Q ss_pred HhccCCCCCH-H-HHHHHHHHccchHHHhhc--cCCCCccccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCC
Q 004004 678 NILFGKDMRQ-S-FYEEVLEGCALNQDIEMW--ADGDLSVVGERGINLSGGQKQRIQLA----RAV-YSNSDVYIFDDPF 748 (779)
Q Consensus 678 NIlfG~~~d~-~-~y~~vl~ac~L~~di~~L--p~Gd~T~IGE~G~nLSGGQKQRIaLA----RAl-y~~adI~LLDDp~ 748 (779)
++++--+.++ . ...+-++.. .+.++.+ ++----.|+.+--.+|+|++||+.++ |++ ..++++ +|+
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~--~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~ 333 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSS--FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPI 333 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHH--HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EEC
T ss_pred EEEEEEECCCCcchHHHHHHHH--HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEE
Confidence 3443211111 1 111111111 1111111 11111233555556788999998887 776 444454 799
Q ss_pred CCcCHHHHHHHHHHH
Q 004004 749 SAVDAHTGTHLFKAR 763 (779)
Q Consensus 749 SALDa~t~~~If~~~ 763 (779)
||+|...-..+++..
T Consensus 334 SA~~g~gi~~L~~~I 348 (364)
T 2qtf_A 334 SALKRTNLELLRDKI 348 (364)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ECCCCcCHHHHHHHH
Confidence 999998888777653
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.00 E-value=5e-06 Score=90.06 Aligned_cols=98 Identities=16% Similarity=0.262 Sum_probs=70.4
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHH-HHHHH-
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYE-EVLEG- 696 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~-~vl~a- 696 (779)
-+++|+++.|.|++|+|||||+.-++..... .| +.++|++ .+++.+.+. +.+.+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g------~~Vl~fS-----------------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD------RGVAVFS-----------------LEMSAEQLALRALSDL 97 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT------CEEEEEE-----------------SSSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEe-----------------CCCCHHHHHHHHHHHh
Confidence 5789999999999999999999998876654 33 2455644 355555443 33322
Q ss_pred ccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 004004 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (779)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALD 752 (779)
+++ +++.+-. | +||++++||++.|...+.++++|+.|+|...+|
T Consensus 98 ~~v--~~~~l~~---------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 98 TSI--NMHDLES---------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HCC--CHHHHHH---------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred hCC--CHHHHhc---------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 222 2222221 2 699999999999999999999999999876554
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.99 E-value=1.9e-07 Score=100.62 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=76.3
Q ss_pred ccccCCcEEeeCCc------EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhc----
Q 004004 611 TIKLTDKMKIMKGS------KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENIL---- 680 (779)
Q Consensus 611 ~L~~~inl~I~~G~------~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIl---- 680 (779)
.++ +++..+.+++ +++|+||+|||||||+++|.+.+....+ .|.+++++|+.+......++...
T Consensus 75 ~l~-~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~-----~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 75 TLQ-QATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD-----HPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHH-HHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred HHH-HHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCeEEEEeecccccchhhhhhHHHHhh
Confidence 455 5666666665 8999999999999999999998875322 24678899999877665554421
Q ss_pred cCCC--CCHHHHHHHHHHccchHHHhhccCCC-CccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 004004 681 FGKD--MRQSFYEEVLEGCALNQDIEMWADGD-LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 681 fG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd-~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa 753 (779)
+|.| +|.+.+.+.++ .+..|. ...+- ..|-+..+|+.-+......+||+|+|-++.-.|.
T Consensus 149 ~g~P~~~D~~~l~~~L~---------~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLN---------AIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTSGGGBCHHHHHHHHH---------HHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCcccccHHHHHHHHH---------hhhccccccccc----hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 3433 45555544443 334444 11110 1122222333222344568999999988876654
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.97 E-value=6.2e-07 Score=93.27 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=35.4
Q ss_pred cEEEeee-EEEeccccccCCCcccccCCcEEeeC---CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 590 AIDIEAG-EYAWDAREENFKKPTIKLTDKMKIMK---GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 590 ~I~~~n~-sFsw~~~~~~~~~~~L~~~inl~I~~---G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++++|+ +|+|+. +.++|+ ++||+|++ |+.++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~-----~~~~l~-~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-----EQQILK-KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHH-HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-----cchhhh-hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 256899 99999999 9999999999999999999998854
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.96 E-value=2.2e-06 Score=85.60 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=36.9
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE--EEcC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI--KVHG 659 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I--~i~g 659 (779)
..++..++|++++|+|++||||||+.++|.+.+. ..| .+ .++|
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G-~~~~~~d~ 61 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKG-KLCYILDG 61 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTT-CCEEEEEH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcC-ceEEEecC
Confidence 5667778999999999999999999999999998 678 66 5553
No 173
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=2.6e-06 Score=84.99 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=24.9
Q ss_pred cCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 606 NFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 606 ~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+..++.++ |+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 9 ~~~~~~~~-~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 9 SGVDLGTE-NLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCC-ceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34567899 999999999999999999999999999999866
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.85 E-value=4.2e-07 Score=103.58 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=77.8
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------------EEEEcccccc-C-CCc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSWI-Q-TGT 674 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------------iayV~Q~pwI-~-ngT 674 (779)
..++ ++++++++| +.|+||+|+|||||+++|.++.. .| .+.++|. +.++.|++-- . .-.
T Consensus 54 ~~~~-~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~-~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFH-EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VP-FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTT-TTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CC-EEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhh-hccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CC-EEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4577 899999999 99999999999999999999975 56 7777652 2233333321 1 112
Q ss_pred HHHHh-ccCCCC------CHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 004004 675 IRENI-LFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (779)
Q Consensus 675 IreNI-lfG~~~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp 747 (779)
+-|+| .++... ..+..++++.. -+ ..|||||+|+..+++|.-.+|++ ||++
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL---------------~~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HH---------------HHGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHH-----HH---------------HHhcccccCccEEEEEecCChhh--cCcc
Confidence 33344 222110 00111111110 01 13788899999999999999987 8888
Q ss_pred CCC------------cCHHHHHHHHHH
Q 004004 748 FSA------------VDAHTGTHLFKA 762 (779)
Q Consensus 748 ~SA------------LDa~t~~~If~~ 762 (779)
+-. -|......|++.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHH
Confidence 753 356666666654
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.82 E-value=6.6e-06 Score=81.81 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=28.8
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
++|++|++++|+||+||||||+++.|.+.+.+..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999855433
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.82 E-value=8e-06 Score=89.28 Aligned_cols=44 Identities=39% Similarity=0.483 Sum_probs=33.6
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc--cccCCCCCeEEEc
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKVH 658 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG--e~~~~~G~~I~i~ 658 (779)
..|+ +++++++ .++|||++|||||||+++|.| +.|..+| .+...
T Consensus 25 ~~l~-~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~ 70 (360)
T 3t34_A 25 SALP-TLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRR 70 (360)
T ss_dssp CCC-----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCS
T ss_pred cccc-cccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCc
Confidence 4677 8888888 899999999999999999999 5677777 55433
No 177
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.78 E-value=2.6e-06 Score=83.88 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe-------EEEEcccccc-CCCcHHHHhc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------KAYVPQSSWI-QTGTIRENIL 680 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~-------iayV~Q~pwI-~ngTIreNIl 680 (779)
|++++|+||+|||||||++.|.+ +.+| .+.++|. .++++|.+.. .+.|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDN-SAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSS-EEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCC-eEEEcccchhhhhccccccCccchhHHHHHHHHHH
Confidence 78999999999999999999987 5678 8888752 3455554321 2335555543
No 178
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.72 E-value=6.2e-05 Score=82.01 Aligned_cols=94 Identities=16% Similarity=0.315 Sum_probs=60.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHcc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCA 698 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~ 698 (779)
-+++|+.+.|.||+|||||||+..++....+..| ++.|++-+.- .++. + .+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~-------~vlyi~~E~~---------------~~~~-~---a~~lG 110 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG-------IAAFIDAEHA---------------LDPE-Y---AKKLG 110 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSCC---------------CCHH-H---HHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-------eEEEEECCCC---------------cCHH-H---HHHcC
Confidence 4789999999999999999999999887765443 4666665431 1111 1 12222
Q ss_pred chHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCc
Q 004004 699 LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAV 751 (779)
Q Consensus 699 L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~--adI~LLDDp~SAL 751 (779)
.+ .+.+. +-. .-++ .|-+.++|++.++ ++++++|++++.+
T Consensus 111 ~~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 111 VD--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp CC--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred CC--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 21 11110 100 0122 3456788888765 9999999999988
No 179
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.71 E-value=1.1e-06 Score=89.88 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=33.3
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
++++++ ++++|+||+|||||||+++|.|.++|.+| .|.++|
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G-~i~~~g 62 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLT-LLHFRN 62 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTT-TC----
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCC-eEEECC
Confidence 355566 89999999999999999999999999999 887655
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.70 E-value=8.6e-06 Score=96.32 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=57.3
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccC--CCCCeEEEcC-------------eEEEEccccccCCCcHHHHhc-
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENIL- 680 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~--~~G~~I~i~g-------------~iayV~Q~pwI~ngTIreNIl- 680 (779)
++++++|.+++|+|++|+|||||++.|++...+ ..| +| .+| .+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 456789999999999999999999999977654 456 55 222 368888988888889999986
Q ss_pred -cCCCCCHHHHHHHHHHccc
Q 004004 681 -FGKDMRQSFYEEVLEGCAL 699 (779)
Q Consensus 681 -fG~~~d~~~y~~vl~ac~L 699 (779)
-|.+.-.....+.++.|..
T Consensus 81 TpG~~~f~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADA 100 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSE
T ss_pred CCCccchHHHHHHHHhhcCc
Confidence 4543112344555555543
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.63 E-value=3.5e-05 Score=82.70 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=69.8
Q ss_pred cccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHH
Q 004004 612 IKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYE 691 (779)
Q Consensus 612 L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~ 691 (779)
|. ++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|++ -+++.+++.
T Consensus 58 LD-~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------~~vl~~s-----------------lE~s~~~l~ 112 (315)
T 3bh0_A 58 LD-RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------DVVNLHS-----------------LEMGKKENI 112 (315)
T ss_dssp HH-HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------CEEEEEE-----------------SSSCHHHHH
T ss_pred HH-hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEE-----------------CCCCHHHHH
Confidence 44 44445899999999999999999999988865432 22 2345543 344454443
Q ss_pred HHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 004004 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (779)
Q Consensus 692 ~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALD 752 (779)
+=+.+....-+++.+..|. ..||++++||++-|-..+.++++++.|+|...+|
T Consensus 113 ~R~~~~~~~i~~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~ 165 (315)
T 3bh0_A 113 KRLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN 165 (315)
T ss_dssp HHHHHHHTTCCHHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH
T ss_pred HHHHHHHcCCCHHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 3222221111233332221 1389999999999999888999999998865443
No 182
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.63 E-value=0.00013 Score=82.20 Aligned_cols=123 Identities=7% Similarity=0.058 Sum_probs=76.5
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHH------------
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIREN------------ 678 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreN------------ 678 (779)
.|+ ++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-- ...+++.
T Consensus 192 ~LD-~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 192 ELD-RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMS--AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHH-HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSC--HHHHHHHHHHHHHTCCHHH
T ss_pred HHH-hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCC--HHHHHHHHHHHHcCCCHHH
Confidence 355 55556899999999999999999999999998776545 24566654321 0112222
Q ss_pred hccCCCCCHHHHHHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCcCH
Q 004004 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY--SNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 679 IlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly--~~adI~LLDDp~SALDa 753 (779)
+.-| .++++.++++.++.. .+...| -.+-+ -.++|++|.+ +.||++. .+++++++|++..-.+.
T Consensus 263 l~~g-~l~~~~~~~~~~a~~---~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 263 LRTG-KLTPEDWGKLTMAMG---SLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHTS-CCCHHHHHHHHHHHH---HHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HhcC-CCCHHHHHHHHHHHH---HHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 2112 234444454444432 122111 11212 2478999986 5677775 57999999999987743
No 183
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.58 E-value=1.6e-05 Score=95.65 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=71.7
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC-eEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g-~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac 697 (779)
.+..|+.+.|+||+||||||++..++++.....| +| .+.++ | |. |+ .-.+.++++.+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~-----~g~~ilvl-~-P~------r~-------La~q~~~~l~~~~ 164 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL-----ENTQVACT-Q-PR------RV-------AAMSVAQRVAEEM 164 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG-----GTCEEEEE-E-SC------HH-------HHHHHHHHHHHHT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC-----CCceEEec-C-ch------HH-------HHHHHHHHHHHHh
Confidence 3557899999999999999999998887655442 12 22222 1 10 00 0001112222211
Q ss_pred cch--HHHh-hccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CcCHHHHHHHHHH
Q 004004 698 ALN--QDIE-MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS-AVDAHTGTHLFKA 762 (779)
Q Consensus 698 ~L~--~di~-~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S-ALDa~t~~~If~~ 762 (779)
+.. ..+. .....+.+.-+.+-.-+|+|+.+|..++++.+++.+++++|||.. ++|.+....+.++
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~ 233 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQ 233 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHH
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHH
Confidence 110 0000 000000001112235689999999999999999999999999997 8887665554444
No 184
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.57 E-value=2.8e-05 Score=77.40 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=39.9
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCe------------EEEEccccccCC-CcHHHHhc
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYVPQSSWIQT-GTIRENIL 680 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~------------iayV~Q~pwI~n-gTIreNIl 680 (779)
++-++|++++|+|++|||||||+++|.|.+ | .+.++|. .++++|++-.+. -++.+|+.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g-~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----G-LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----C-CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----C-CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 566789999999999999999999999987 7 7777652 356666544322 24555553
No 185
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.00018 Score=73.20 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=27.4
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
.--+++|+.++|+||+|||||||+..++....+.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~ 50 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM 50 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3468999999999999999999977666554433
No 186
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.52 E-value=7.4e-05 Score=84.62 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=57.0
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHH
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY 690 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y 690 (779)
.++ ++++++++| +.++||+|+|||||++++.++... - -+.+++ . ++
T Consensus 40 ~~~-~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~-f~~is~-------~----------------~~----- 85 (476)
T 2ce7_A 40 KFN-RIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--P-FFHISG-------S----------------DF----- 85 (476)
T ss_dssp HHH-TTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--C-EEEEEG-------G----------------GT-----
T ss_pred HHh-hcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--C-eeeCCH-------H----------------HH-----
Confidence 455 777888888 889999999999999999997631 0 111110 0 00
Q ss_pred HHHHHHccchHHHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 004004 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (779)
Q Consensus 691 ~~vl~ac~L~~di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~S 749 (779)
.+. .+| .|++++|-.+++|....|.|+++||+-+
T Consensus 86 ------------~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 86 ------------VEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ------------TTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ------------HHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 000 012 2789999999999999999999999943
No 187
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00015 Score=79.10 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCCCe-EEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchH
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAA-IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~-I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (779)
.-.++++|++|+|||||++.+.|.....++.. ...+-.+..++++.. ...+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--------------------------~~~l-- 218 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYF--------------------------RYQI-- 218 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTE--------------------------EEEE--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCc--------------------------eEEE--
Confidence 34799999999999999999998653211100 000001222222110 0011
Q ss_pred HHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCcCHHHHHHHHHHH
Q 004004 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD-DPFSAVDAHTGTHLFKAR 763 (779)
Q Consensus 702 di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLD-Dp~SALDa~t~~~If~~~ 763 (779)
-..|+-.+ .....+|+|++|++. |.+...|+-++++| ++.+++|.+...+++++.
T Consensus 219 --~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i 274 (357)
T 2e87_A 219 --IDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274 (357)
T ss_dssp --EECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH
T ss_pred --EeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH
Confidence 01122111 123468999999887 66666777789999 999999998887777654
No 188
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.47 E-value=0.00012 Score=84.35 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=35.6
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE-EcC
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHG 659 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~-i~g 659 (779)
..+++|+.++|+|++|||||||+++|.|.+.+.+|..+. ++|
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 357899999999999999999999999999988763454 554
No 189
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.44 E-value=5.9e-05 Score=75.70 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
++|++++|+||+|||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 190
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.42 E-value=0.00017 Score=77.50 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
+++|++++|+.++|+|++|+||||++..|.+.+.+..| +|.+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-kVll 138 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY-KVLI 138 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEE
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEE
Confidence 77888899999999999999999999999999988766 5544
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.41 E-value=4.3e-05 Score=76.26 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=33.1
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
..++|++++|+|++||||||+++.|.+.+++.+| .+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~-~v~~ 55 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI-SVCV 55 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC-eEEE
Confidence 3578999999999999999999999999988777 5543
No 192
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.38 E-value=2.3e-05 Score=89.29 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhc--cccCCCCCeEEE
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILG--EIPRISGAAIKV 657 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG--e~~~~~G~~I~i 657 (779)
.+.+++.+|..+.|.|++||||||++++|+. .+....| .+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~-~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPE-DVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTT-TEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCc-eEEE
Confidence 3567888999999999999999999999886 3445556 5654
No 193
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.36 E-value=8.8e-05 Score=75.63 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=31.2
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
.+.++|++++|+|++||||||++++|.|. +| .|.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g-~v~~~~ 51 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KN-DICLLT 51 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TT-TEEEEC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cC-CeEEEe
Confidence 44578999999999999999999999997 56 666543
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.32 E-value=5.2e-05 Score=82.80 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=46.5
Q ss_pred ccEEEeeeEEEeccccccCCCccccc-------------CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKL-------------TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~-------------~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+.+.|+|++|.|+.. ...|+. |+.+.+.+|++++|+|++|+|||||++.|.+....
T Consensus 132 ~ri~Fe~ltp~yP~e-----r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 132 NKILFENLTPLHANS-----RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TSCCTTTSCEESCCS-----BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCC-----ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 468999999999862 334441 57899999999999999999999999999987643
No 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.19 E-value=0.00014 Score=70.40 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
++|+.++|+|++||||||+++.|.+.+ | .+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g-~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----H-AAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----T-CEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----C-cEEEeC
Confidence 469999999999999999999999865 6 665554
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.06 E-value=0.00021 Score=77.84 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=30.6
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+++|+.+.|.||+|||||||+..++++..+..|
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg 90 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG 90 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999887655
No 197
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.01 E-value=0.00091 Score=75.11 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=29.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
-+++|+++.|.|++|+|||||..-++.......|
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g 229 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG 229 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 3789999999999999999999999887664444
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.97 E-value=0.0013 Score=69.15 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccchH
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (779)
++.-+.+.||+|+||||+++++.++.. ..-+.+++ +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~~~i~~--------~~l------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS---ATFLNISA--------ASL------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---CEEEEEES--------TTT-------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC---CCeEEeeH--------HHH-------------------------------
Confidence 567899999999999999999999763 20111111 000
Q ss_pred HHhhccCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 004004 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 702 di~~Lp~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa 753 (779)
. ...+| ++++++|-.+++|-..+|.++++||+-+..+.
T Consensus 91 -----~---~~~~~------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 -----T---SKYVG------DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp -----S---SSSCS------CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred -----h---hcccc------hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 0 01112 46888898899998899999999999877654
No 199
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00029 Score=67.76 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
.|+.++|+|++||||||+++.|.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999998764
No 200
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.96 E-value=0.0025 Score=68.36 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=68.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCC--CCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~--~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~a 696 (779)
-+++|+.+.|+|++|||||||+..+....... .|+ ..+.+.|++-+. .++.++..+.++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~---------------~~~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEG---------------TFRWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCC---------------CCCHHHHHHHHHH
Confidence 47899999999999999999999998765332 120 135677775432 2345666555555
Q ss_pred ccchHH--HhhccCCCCccccCCCCCCCh-HHHHHHHHHHHHc---cCCCEEEEeCCCCCcCH
Q 004004 697 CALNQD--IEMWADGDLSVVGERGINLSG-GQKQRIQLARAVY---SNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 697 c~L~~d--i~~Lp~Gd~T~IGE~G~nLSG-GQKQRIaLARAly---~~adI~LLDDp~SALDa 753 (779)
.+.+.+ ++.+ .+.. ..++ -|.+.+..++++. .+++++++|..++-.++
T Consensus 165 ~g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 165 LGLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TTCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred hCCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 554321 1111 0100 0122 3456777888877 57999999998876644
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.92 E-value=0.00017 Score=83.19 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=37.6
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
.+. ++++++ +|+.+.++||+|+|||||+++|.+++.+..| .+.+.|
T Consensus 98 ~l~-~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~-~i~~~~ 143 (543)
T 3m6a_A 98 AVQ-KLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV-RISLGG 143 (543)
T ss_dssp HHH-HHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE-EECCCC
T ss_pred HHH-HhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE-EEEecc
Confidence 345 666667 8999999999999999999999999987777 665443
No 202
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.92 E-value=0.00035 Score=77.90 Aligned_cols=129 Identities=10% Similarity=0.026 Sum_probs=74.5
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccccc---C--CCcHH--HHhc-c--CCC
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI---Q--TGTIR--ENIL-F--GKD 684 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI---~--ngTIr--eNIl-f--G~~ 684 (779)
+++++ +|+.++++|++||||||++..|.+.+.+..| +|.+ +..++.= . -.+.+ .|+- + +..
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~-~Vll------vd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~ 162 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLL------VAADTQRPAAREQLRLLGEKVGVPVLEVMDG 162 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEE------EECCSSCHHHHHHHHHHHHHHTCCEEECCTT
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEE------eeccccCchhHHHHHHhcccCCccEEecCCC
Confidence 66777 8999999999999999999999999998766 6654 2222210 0 01122 2331 1 122
Q ss_pred CCHHHHHHHHHHccchHHHhhc-cCCCCccccCCCCCC---ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 004004 685 MRQSFYEEVLEGCALNQDIEMW-ADGDLSVVGERGINL---SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (779)
Q Consensus 685 ~d~~~y~~vl~ac~L~~di~~L-p~Gd~T~IGE~G~nL---SGGQKQRIaLARAly~~adI~LLDDp~SALDa~t~~~If 760 (779)
.++... + .+-++.+ .+++|..|=+-.-.+ .+...+..+++|++..++-++++| ++++.|+.....-|
T Consensus 163 ~~p~~i---~-----~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~~a~~f 233 (425)
T 2ffh_A 163 ESPESI---R-----RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALSVARAF 233 (425)
T ss_dssp CCHHHH---H-----HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHHHHHH
T ss_pred CCHHHH---H-----HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHHHHHHH
Confidence 333332 1 1223333 356665554433233 234566778888886665566666 66666665443334
Q ss_pred H
Q 004004 761 K 761 (779)
Q Consensus 761 ~ 761 (779)
+
T Consensus 234 ~ 234 (425)
T 2ffh_A 234 D 234 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.92 E-value=0.0012 Score=73.60 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
++..++++|++||||||++..|.+.+.+..+ +|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~-kVl 129 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY-KVG 129 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC-CEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEE
Confidence 5789999999999999999999999987544 443
No 204
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.91 E-value=0.0033 Score=63.93 Aligned_cols=28 Identities=39% Similarity=0.561 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+++|+|++|+|||||++.|+|.-...+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999998776655
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.85 E-value=0.0067 Score=65.61 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=66.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccc--cCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHH
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~--~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~a 696 (779)
-+++|+++.|+||+|||||||+..+.... ++..|+ ..+.+.|++-+. .++.+++.+..+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg---~~~~vlyi~~E~---------------~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY---PGGKIIFIDTEN---------------TFRPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB---CCCEEEEEESSS---------------CCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCeEEEEECCC---------------CCCHHHHHHHHHH
Confidence 47899999999999999999999998863 332221 135677776443 2345555555555
Q ss_pred ccchHH--HhhccCCCCccccCCCCCCCh-HHHHHHHHHHHHc----cCCCEEEEeCCCCCcCH
Q 004004 697 CALNQD--IEMWADGDLSVVGERGINLSG-GQKQRIQLARAVY----SNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 697 c~L~~d--i~~Lp~Gd~T~IGE~G~nLSG-GQKQRIaLARAly----~~adI~LLDDp~SALDa 753 (779)
.+.+.+ ++.+ .+- + ..++ -+.+.+..++.+. .+++++++|..++-.++
T Consensus 180 ~g~~~~~~l~~l------~~~-~--~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 180 FNVDHDAVLDNV------LYA-R--AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TTCCHHHHHHTE------EEE-E--CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred cCCCHHHHHhce------eEe-e--cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 544321 1111 000 0 0122 3445566666665 56999999999887654
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.76 E-value=0.00028 Score=76.55 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=39.2
Q ss_pred cccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 610 PTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
..++ ++++++++|..++|+|+.|+|||||++.|+|.+.+..| ++.+
T Consensus 44 ~~~~-~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-~v~v 89 (341)
T 2p67_A 44 QLLD-AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-KVAV 89 (341)
T ss_dssp HHHH-HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEE
T ss_pred HHHH-hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEE
Confidence 3566 78888999999999999999999999999999887666 5543
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.76 E-value=0.00053 Score=74.56 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=31.2
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
++|..++|+|++|||||||++.|+|...+.+| +|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-KLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-eEEE
Confidence 35789999999999999999999998887777 6654
No 208
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.68 E-value=0.00087 Score=68.38 Aligned_cols=41 Identities=15% Similarity=0.355 Sum_probs=30.1
Q ss_pred cccCCcEEee---CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 612 IKLTDKMKIM---KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 612 L~~~inl~I~---~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
|. +.|+.+. +|.+++|.|++||||||+++.|...+.. .+ .+
T Consensus 13 ~~-~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~-~~ 56 (229)
T 4eaq_A 13 LG-TENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DY-DV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TS-CE
T ss_pred cc-CCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CC-Cc
Confidence 44 5555554 8999999999999999999999999887 55 44
No 209
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.65 E-value=0.0006 Score=66.23 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
++|+.++++|++||||||+.+.|.+.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999998765 45
No 210
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.63 E-value=0.0057 Score=66.28 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.3
Q ss_pred CCc--EEEEEcCCCCChhHHHHHHhccccCCC
Q 004004 622 KGS--KVAVCGSVGSGKSSLLSSILGEIPRIS 651 (779)
Q Consensus 622 ~G~--~vaIvG~sGSGKSTLL~~iLGe~~~~~ 651 (779)
+|. .+.|+||+|+|||||++.+.++..+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 456 899999999999999999999987653
No 211
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.59 E-value=0.0011 Score=63.08 Aligned_cols=29 Identities=41% Similarity=0.578 Sum_probs=23.8
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHh
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iL 644 (779)
+..+++.+| +.+|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 444555555 89999999999999999986
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.57 E-value=0.0008 Score=66.94 Aligned_cols=30 Identities=33% Similarity=0.747 Sum_probs=26.3
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999999988774
No 213
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.54 E-value=0.0011 Score=64.92 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=26.4
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.50 E-value=0.0012 Score=63.66 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999874
No 215
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.48 E-value=0.00066 Score=67.04 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.4
Q ss_pred CcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 609 KPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 609 ~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
.++++ +++++.+++ +++++|++|+|||||++.+.+
T Consensus 13 ~~~l~-~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQ-FLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHH-HHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHH-HhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 35677 888888777 689999999999999999997
No 216
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.39 E-value=0.0025 Score=71.60 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=26.2
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
-+++|+++.|.|++|+|||||..-++...-
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 378999999999999999999988876554
No 217
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.35 E-value=0.0014 Score=64.07 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=31.5
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeE
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I 655 (779)
...++|..+.++|++||||||+.+.|.+.+....| .+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~-~~ 44 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGY-RV 44 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eE
Confidence 34568999999999999999999999998887666 44
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.30 E-value=0.00082 Score=67.27 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.5
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+.+++|.+++|+|++||||||+.+.|.+.+++..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 55789999999999999999999999998886666
No 219
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.28 E-value=0.0021 Score=62.92 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=20.9
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
.++ +++++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~-~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLA-SLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHH-HhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 567 888887776 789999999999999999997
No 220
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.23 E-value=0.011 Score=56.72 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLG 645 (779)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 221
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.08 E-value=0.0048 Score=62.76 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=62.1
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccccc-CCCcHHHHhc--cCCCCCHHHHHHHHHH
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI-QTGTIRENIL--FGKDMRQSFYEEVLEG 696 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI-~ngTIreNIl--fG~~~d~~~y~~vl~a 696 (779)
+.+|+.++++||+||||||++..++.+.....| . ...+..+.|.|-. ..-++.+|+. ++.+.. ..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~--------~~ 140 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-R---AAECNIVVTQPRRISAVSVAERVAFERGEEPG--------KS 140 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-C---GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT--------SS
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-C---CCceEEEEeccchHHHHHHHHHHHHHhccccC--------ce
Confidence 457999999999999999988877755433333 2 1234455555542 2234555553 221110 00
Q ss_pred ccchHHHhhccCCCCccccCCC---CCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CcCHHHH
Q 004004 697 CALNQDIEMWADGDLSVVGERG---INLSGGQKQRIQLARAVYSNSDVYIFDDPFS-AVDAHTG 756 (779)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGE~G---~nLSGGQKQRIaLARAly~~adI~LLDDp~S-ALDa~t~ 756 (779)
++.... .+......+ +=-+.|+-.+.. ++-+++-+++++||+=. .+|....
T Consensus 141 ~g~~~~-------~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 141 CGYSVR-------FESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp EEEEET-------TEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred EEEeec-------hhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHH
Confidence 110000 001111011 113456666653 44689999999999965 4655444
No 222
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.06 E-value=0.0038 Score=69.93 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc------------CCCCCeEEEcCe
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP------------RISGAAIKVHGK 660 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~------------~~~G~~I~i~g~ 660 (779)
-+++|+|++|+|||||++.|+|+.. +.+| .+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~-~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDD-EVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCE-EEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEE-EEEECCE
Confidence 4799999999999999999999853 4566 6777774
No 223
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.05 E-value=0.0025 Score=70.25 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=31.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhcc-----------ccCCCCCeEEEcC
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE-----------IPRISGAAIKVHG 659 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe-----------~~~~~G~~I~i~g 659 (779)
.+++|.+++|||++|+|||||+++|.|. .+|..| .+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g-~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNES-RVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEE-EEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeE-EEEECC
Confidence 4578899999999999999999999998 556666 665543
No 224
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.99 E-value=0.0068 Score=64.60 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
++.-+.|+||+|+|||||++++.++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34678999999999999999999988654
No 225
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.99 E-value=0.0023 Score=67.92 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
No 226
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.96 E-value=0.0067 Score=67.93 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+.-+.|.||+|+|||||+++|.+++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999998754
No 227
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.94 E-value=0.0036 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++|+|++|+|||||++.+.|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999643
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.93 E-value=0.01 Score=59.37 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
++..+.|+||+|+|||||++++..+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999987654
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.92 E-value=0.0031 Score=61.52 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
-..++|+|++|||||||++.|+++++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3579999999999999999999987653
No 230
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.88 E-value=0.0038 Score=60.11 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
.|.++.|+|++||||||+.+.|...++
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 231
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.77 E-value=0.0057 Score=58.13 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 232
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.77 E-value=0.0067 Score=58.50 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++++|++|+|||||++.+.|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.76 E-value=0.0031 Score=66.89 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=33.2
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEE
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~ 656 (779)
++++.+ |+.++++|++|+||||++..|.+.+.+..| ++.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-~v~ 130 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-KVG 130 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-CEE
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEE
Confidence 667766 999999999999999999999999987655 443
No 234
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=4 Score=47.05 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSAL 353 (779)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L 353 (779)
...+++.++..++..+..++.-.++...+..- +.+ .....++.++++.++..++..+......+...++..++|..+
T Consensus 26 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 102 (587)
T 3qf4_A 26 VLAPLFMVVEVICDLSQPTLLARIVDEGIARG-DFS--LVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDL 102 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555565544221 111 122234444444444555555556666677889999999999
Q ss_pred HHHHHHHH
Q 004004 354 TVLIYKRS 361 (779)
Q Consensus 354 ~~~iy~K~ 361 (779)
...+.+..
T Consensus 103 ~~~ll~~~ 110 (587)
T 3qf4_A 103 FRKVLSFS 110 (587)
T ss_dssp HHHHHHCC
T ss_pred HHHHHCCC
Confidence 99887653
No 235
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.73 E-value=0.005 Score=61.45 Aligned_cols=29 Identities=41% Similarity=0.578 Sum_probs=23.3
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHh
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iL 644 (779)
+.++++.+| +++|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 89999999999999999884
No 236
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.0067 Score=65.45 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+++..+.|+||+|+|||||++.+.+++++..|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999998876543
No 237
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.71 E-value=0.0034 Score=62.09 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
..+++|+|++||||||+.+.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.71 E-value=0.011 Score=62.18 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
...+.++||+|+||||+.++|.+...+.+|
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 357899999999999999999999887766
No 239
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.67 E-value=0.0063 Score=64.15 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=29.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
++|.++.|+||+||||||+.+.|..+++ .| .+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~-~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GN-VIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TC-CEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CC-eEEEec
Confidence 4678999999999999999999988764 35 555554
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.67 E-value=0.0043 Score=63.98 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=30.4
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcC
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g 659 (779)
..++|..+.++|++||||||+.+.|.+.+. .| .+.++|
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~-~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GN-IVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TC-CEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CC-cEEEec
Confidence 456789999999999999999999998775 24 454444
No 241
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.66 E-value=0.011 Score=66.30 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|||++|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999984
No 242
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.005 Score=59.70 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.+|..++++|+.||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.63 E-value=0.0045 Score=61.09 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=20.9
Q ss_pred EEEEcCCCCChhHHHHHHhcccc
Q 004004 626 VAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 626 vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+.|+||||||||||.+.|+.+.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987764
No 244
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0058 Score=60.51 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 004004 625 KVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLG 645 (779)
.++|+|++||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.56 E-value=0.005 Score=60.79 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 004004 625 KVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLG 645 (779)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.50 E-value=0.0051 Score=58.57 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
No 247
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.46 E-value=0.0021 Score=70.08 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=32.9
Q ss_pred ccEEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 589 VAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 589 ~~I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
+.+.++|++..|.. ..+++ +++++| +|+|++|+|||||++.|.|.-....|
T Consensus 16 ~~v~~~~l~~~~~~------k~~~~-~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 16 GYVGFANLPNQVHR------KSVKK-GFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp -----CCHHHHHHT------HHHHH-CCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred ceEEeccchHHhCC------eeecC-CCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 45777777766643 34566 777765 99999999999999999887544443
No 248
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.35 E-value=0.0082 Score=58.16 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+|.+++|+|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999976554
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.35 E-value=0.014 Score=62.34 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.7
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|..+.|.||.|+|||||...+..+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999999875
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.35 E-value=0.0051 Score=63.23 Aligned_cols=32 Identities=41% Similarity=0.501 Sum_probs=24.7
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++..+++| +.++||+|+|||||++++.++..
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455556666 89999999999999999999874
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.32 E-value=0.0085 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.+|.+++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998876
No 252
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.29 E-value=0.008 Score=58.46 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999998654
No 253
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.21 E-value=0.0036 Score=71.59 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.7
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHh
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iL 644 (779)
.++ ++++++.+| +++|+|++|||||||+.+|.
T Consensus 50 ~~~-~~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 50 TIT-QLELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp TBS-CEEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred cee-eEEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 356 788999999 99999999999999999993
No 254
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.20 E-value=0.0049 Score=67.38 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=40.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccch
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALN 700 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L~ 700 (779)
+++|||++|+|||||+++|.|.....+. . | -.|+..|+... ++++++++.+.+.....
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~--~------------p---~~Ti~pn~g~~-~v~~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAAN--Y------------P---FATIDKNVGVV-PLEDERLYALQRTFAKG 60 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSS--C------------C---GGGGSTTEEEE-ECCCHHHHHHHHHHCBT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccC--C------------C---CceeccceeeE-ecChHHHHHHHHHhccc
Confidence 4899999999999999999997432221 0 0 12788887665 45567777777666554
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.17 E-value=0.037 Score=60.14 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=32.7
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~ 667 (779)
+++|+.+.|.|+.|||||||...++.+.....+ ++.|++-+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~-------~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEeCC
Confidence 789999999999999999999998887664333 45666543
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.14 E-value=0.0099 Score=56.31 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCChhHHHHHH
Q 004004 624 SKVAVCGSVGSGKSSLLSSI 643 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~i 643 (779)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.07 E-value=0.008 Score=61.45 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+...++|+||+||||||+.+.|...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998654
No 258
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.04 E-value=0.012 Score=64.63 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
.+.-++|+|++||||||+++.+++.+.+..+ .+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~-~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGS-RVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCC-EEEE
Confidence 4667899999999999999999998877666 6654
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.04 E-value=0.0088 Score=57.92 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..+.++|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 260
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.0095 Score=58.74 Aligned_cols=28 Identities=39% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+|.+++|+|+.||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999876653
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.02 E-value=0.0031 Score=62.55 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=48.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc---ccCCCcHHHHhc--cCC-CCCHHH--HHHHHHH
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS---WIQTGTIRENIL--FGK-DMRQSF--YEEVLEG 696 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p---wI~ngTIreNIl--fG~-~~d~~~--y~~vl~a 696 (779)
+++|+|++||||||+++.|...++.... .+ .++.... .++..++|+.+. +|. +.++.. .......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~-~v------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r 74 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR-SV------ATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDR 74 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE-EE------EEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC-eE------EEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHH
Confidence 6899999999999999999998865322 32 2222111 112445666552 221 112221 1111222
Q ss_pred ccchHHHhhccCCCCccccCCCC
Q 004004 697 CALNQDIEMWADGDLSVVGERGI 719 (779)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGE~G~ 719 (779)
....+.+..+..+.++.|.|++.
T Consensus 75 ~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 75 AGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp HEEHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhHHHHHHHhhCCCEEEECCCc
Confidence 22245566655556788888765
No 262
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.01 E-value=0.0092 Score=60.63 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++|..++|+|++||||||+.+.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999998643
No 263
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.00 E-value=3.5 Score=47.61 Aligned_cols=207 Identities=11% Similarity=0.086 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSAL 353 (779)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L 353 (779)
..-++..++..++..+..++.-.++..++..- +.. ........++++.++..++..+..........++..++|..+
T Consensus 40 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 116 (598)
T 3qf4_B 40 IMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR-RFD--LLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKEL 116 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555566666666665322 222 233334444444455555555555666667889999999999
Q ss_pred HHHHHHHHhc----ccCC---CC---ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004004 354 TVLIYKRSMA----IKFA---GP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (779)
Q Consensus 354 ~~~iy~K~L~----ls~~---~~---~sG~ivnlms~Dv~~i~~~~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~ 423 (779)
...+.+..+. .+.. ++ +...+-+.+.. .+..++ ..+. .++-.++.++.+.+.++ +..++.+.
T Consensus 117 ~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~---~~~~~~---~~~~-~~i~~~~~l~~~~~~l~-l~~l~~~~ 188 (598)
T 3qf4_B 117 FEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGN---SIIQFF---SGIV-TLAGAVIMMFRVNVILS-LVTLSIVP 188 (598)
T ss_dssp HHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHT---HHHHHH---HHHH-HHHHHHHHHHHHCHHHH-HHHTTHHH
T ss_pred HHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHH-HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9998875443 1221 11 12222222221 122222 1222 22223333444444444 33333322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhchH-HHHHHHHHHHHHHHHHHHH
Q 004004 424 -STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE-QEFLKKLLRLREIERDSLK 492 (779)
Q Consensus 424 -~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE-~~f~~~i~~~R~~E~~~l~ 492 (779)
..++...+.....+..++.++ ........+.-.-+-++-+|.-.....+ +.|.+..++.++...+..+
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 189 LTVLITQIVSSQTRKYFYENQR-VLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444444444433 3334444555455566666666555443 4556666666655555433
No 264
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.016 Score=54.51 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999974
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.99 E-value=0.0079 Score=58.12 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.95 E-value=0.012 Score=58.28 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
++|.+++|+|+.||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999986543
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.91 E-value=0.012 Score=57.66 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
...++|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999875
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.88 E-value=0.01 Score=58.04 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.86 E-value=0.048 Score=60.82 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
++..++++|+.|+||||++..|...+.. .|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK-RG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-TT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH-CC
Confidence 4678999999999999999999988875 45
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.85 E-value=0.01 Score=61.27 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++++|+||+|||||||.+.|.+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998765
No 271
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.83 E-value=0.015 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 272
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.82 E-value=0.013 Score=55.01 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++++|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 689999999999999999998543
No 273
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.82 E-value=0.013 Score=57.94 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=25.1
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
.++|.+++|+|+.||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987654
No 274
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.80 E-value=0.014 Score=58.35 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
++..++|+|++||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 275
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.80 E-value=0.012 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccC
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
..++|+|++|||||||+..|++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 36899999999999999999998764
No 276
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.74 E-value=0.014 Score=54.52 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 277
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.73 E-value=0.02 Score=62.27 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc-----------ccCCCCCeEEEcC
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE-----------IPRISGAAIKVHG 659 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe-----------~~~~~G~~I~i~g 659 (779)
|.+++|||.+|+|||||+++|.|. ..|..| .+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCC
Confidence 568999999999999999999983 245566 666554
No 278
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.72 E-value=0.011 Score=71.15 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=29.8
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
++.+++|+.+.++||+|||||||+++|.|+++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999999999998753
No 279
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.71 E-value=0.0045 Score=67.12 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=32.5
Q ss_pred cccccCCcEEeeCCcE--EEEEcCCCCChhHHHHHHhcccc
Q 004004 610 PTIKLTDKMKIMKGSK--VAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~--vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
.+++ .+++.+++|+. ++++|+.||||||+.++|.+.+.
T Consensus 10 ~il~-~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQ-LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHH-HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3566 77788889988 99999999999999999988653
No 280
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.68 E-value=0.015 Score=59.68 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
-+++++|++|+|||||++.|+|.-.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999998754
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.68 E-value=0.015 Score=56.70 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++|..++|+|+.||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999997654
No 282
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.68 E-value=0.016 Score=54.72 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999999864
No 283
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.67 E-value=0.014 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|+.|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998653
No 284
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.65 E-value=0.015 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 285
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.64 E-value=0.015 Score=54.27 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 286
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.64 E-value=0.012 Score=56.69 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=18.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++.++.|+|+.||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999987654
No 287
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.63 E-value=0.016 Score=54.04 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 288
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.63 E-value=0.019 Score=54.56 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+.-+++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 289
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.63 E-value=0.017 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 290
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.015 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.-+++|+|++|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999864
No 291
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.60 E-value=0.015 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|+.|+|||||++.+++.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.60 E-value=0.026 Score=58.65 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q 004004 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKA 762 (779)
Q Consensus 728 RIaLARAly~~adI~LLDDp~SALDa~t~~~If~~ 762 (779)
|++||||+.++||++++|||+ |.++...+.+.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~ 119 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRA 119 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH
Confidence 899999999999999999999 99887665543
No 293
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.60 E-value=0.014 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 294
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.59 E-value=0.016 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999965
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.55 E-value=0.018 Score=54.23 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 296
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.54 E-value=0.016 Score=54.21 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 297
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.52 E-value=0.016 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
--+++|+|++|+|||||++.+.+.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 298
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.52 E-value=0.017 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998753
No 299
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.48 E-value=0.017 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 300
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.44 E-value=0.016 Score=54.96 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999876
No 301
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.0045 Score=66.60 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=34.3
Q ss_pred cccccCCcEEeeCCcE--EEEEcCCCCChhHHHHHHhccccCCC
Q 004004 610 PTIKLTDKMKIMKGSK--VAVCGSVGSGKSSLLSSILGEIPRIS 651 (779)
Q Consensus 610 ~~L~~~inl~I~~G~~--vaIvG~sGSGKSTLL~~iLGe~~~~~ 651 (779)
.+++ .++..+++|+. +.++||+|+||||+++++.+++.+..
T Consensus 32 ~~~~-~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 32 EVIT-TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp HHHH-HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred HHHH-HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3556 67778888988 99999999999999999999875543
No 302
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.42 E-value=0.017 Score=55.63 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++|+|++|+|||||++.+++.-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999999864
No 303
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.42 E-value=0.017 Score=60.06 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|+|++|+|||||++.|+|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.41 E-value=0.018 Score=55.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
=+++|+|+.|+|||||++.+++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999986
No 305
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.40 E-value=0.02 Score=55.43 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..++|+|+.||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887644
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.33 E-value=0.016 Score=56.61 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.5
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.+++.+++|+|+.||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999997754
No 307
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.32 E-value=0.019 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 308
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.28 E-value=6.3 Score=45.27 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCC----CChH---HHHHHHHHhHHHHHHH
Q 004004 319 VLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI---KFAG----PSSG---IIINMINVDVERIGDF 388 (779)
Q Consensus 319 ~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy~K~L~l---s~~~----~~sG---~ivnlms~Dv~~i~~~ 388 (779)
.+++..++..++..+..........++..++|..+...+.+..... .... +-+. .+-+.+.... ...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~---~~~ 142 (578)
T 4a82_A 66 ALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGL---MNI 142 (578)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCC---CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3333344444444555555556678888999999998887754431 1211 1112 2222222111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 004004 389 FLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF-STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVL 467 (779)
Q Consensus 389 ~~~~~~~~~~pl~i~~~l~lL~~~lg~~~~l~~l~-~~ll~~~~~~~~~k~~~~~~~~~~~~~d~R~~~~~E~L~~ir~I 467 (779)
+ ..+....+ .++.++.+.+.++ +.+++.+. ..++...+.....+..++.+ +..........-+-+-++-+|..
T Consensus 143 ~---~~~~~~i~-~~~~l~~~~~~l~-l~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~l~gi~~ik~~ 216 (578)
T 4a82_A 143 W---LDCITIII-ALSIMFFLDVKLT-LAALFIFPFYILTVYVFFGRLRKLTRERS-QALAEVQGFLHERVQGISVVKSF 216 (578)
T ss_dssp H---HHHHHHHH-HHHHHHHHCTTTH-HHHTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHH-HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHh
Confidence 1 12222222 2333344433445 33333322 23333444455555444444 34445556666666777778877
Q ss_pred HHhchH-HHHHHHHHHHHHHHHHHHHHHH
Q 004004 468 KLLSWE-QEFLKKLLRLREIERDSLKKYL 495 (779)
Q Consensus 468 K~~~wE-~~f~~~i~~~R~~E~~~l~~~~ 495 (779)
.....+ +.|.+..++.++.+.+..+...
T Consensus 217 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 217 AIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554 5677777777777666555443
No 309
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.23 E-value=0.021 Score=54.76 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998653
No 310
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.17 E-value=0.02 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++++|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999754
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.17 E-value=0.025 Score=56.60 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++|.++.++|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999997654
No 312
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.17 E-value=0.025 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999864
No 313
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.15 E-value=0.082 Score=56.43 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..-+.+.||+|+|||+|.+++..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455679999999999999999999987
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.14 E-value=0.02 Score=57.61 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++.+++|+|+.||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998654
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.14 E-value=0.018 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 316
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.14 E-value=0.02 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 317
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.13 E-value=0.022 Score=54.71 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999963
No 318
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.10 E-value=0.025 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 319
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.09 E-value=0.018 Score=60.94 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=27.8
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+.++++.-+.++||+|+|||||++++.++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567899999999999999999999999874
No 320
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.09 E-value=0.023 Score=55.02 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.08 E-value=0.023 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
++.|+|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988765
No 322
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.08 E-value=0.023 Score=53.11 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 004004 625 KVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLG 645 (779)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.03 E-value=0.023 Score=55.85 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+..+++|+|+.||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998654
No 324
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.03 E-value=0.028 Score=60.41 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++..++|+||+|||||||...|...++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3667999999999999999999998764
No 325
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.02 E-value=0.11 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
.++.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 326
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.02 E-value=0.024 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998654
No 327
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.01 E-value=0.025 Score=54.57 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc----ccCCCC
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE----IPRISG 652 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe----~~~~~G 652 (779)
.-+++++|++|+|||||++.+.+. +.|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 347999999999999999999986 344555
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.00 E-value=0.029 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++.+++|+|+.||||||+.+.|...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997654
No 329
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.024 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 330
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.99 E-value=0.025 Score=53.82 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+++.-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 331
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.97 E-value=0.027 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+.-+++|+|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999975
No 332
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.96 E-value=0.026 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+++|+|+.|+|||||++.+.|..+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 333
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.95 E-value=0.024 Score=59.80 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|+|+.|+|||||+++|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 334
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.92 E-value=0.025 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+|+.|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36999999999999999999864
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.92 E-value=0.025 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|+.|+|||||++.+.+.-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 79999999999999999998653
No 336
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.88 E-value=0.027 Score=59.66 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.++|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 337
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.87 E-value=0.037 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
.-+++|+|++|+|||||++.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999973
No 338
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.84 E-value=0.063 Score=58.15 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..-+.++||+|+|||+|++++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999875
No 339
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.84 E-value=0.025 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 340
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.82 E-value=0.028 Score=57.68 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++|+|++|+|||||++.|+|.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999864
No 341
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.81 E-value=0.029 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+|+|+|++|+|||||++.++|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999963
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.77 E-value=0.025 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+.-+++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 343
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.74 E-value=0.03 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998754
No 344
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.74 E-value=0.028 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.73 E-value=0.024 Score=56.30 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 346
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.71 E-value=0.027 Score=58.79 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||+++++|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999875
No 347
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.71 E-value=0.029 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 348
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.70 E-value=0.021 Score=60.21 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~pwI 670 (779)
++-+++|.|++||||||+.+.|...+.. .| -++.+++++.+-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~-~~------~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR-EG------VKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH-HT------CCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh-cC------CCeeEeecchhh
Confidence 4568999999999999999998765432 22 135667777654
No 349
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.69 E-value=0.04 Score=52.56 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 004004 625 KVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iL 644 (779)
+++|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 350
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.65 E-value=0.03 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998653
No 351
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.65 E-value=0.029 Score=61.24 Aligned_cols=29 Identities=41% Similarity=0.721 Sum_probs=23.8
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHh
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iL 644 (779)
+.++++.+| +++|+|++||||||++.||.
T Consensus 18 ~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445666664 89999999999999999874
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.63 E-value=0.032 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++|.|+.||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 353
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.029 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.61 E-value=0.029 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997655
No 355
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.61 E-value=0.031 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 356
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.59 E-value=0.031 Score=54.70 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
No 357
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.59 E-value=0.034 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 358
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.59 E-value=0.038 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999999754
No 359
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.58 E-value=0.12 Score=55.61 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+|.-+.+.||+|+|||++.+++..++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999998864
No 360
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.57 E-value=0.032 Score=57.58 Aligned_cols=23 Identities=48% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|++|+|||||+++++|.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 361
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.56 E-value=0.035 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 362
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.03 Score=54.24 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 37999999999999999999874
No 363
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.55 E-value=0.035 Score=55.65 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.-+++|+|++|+|||||++.+.+.-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 364
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.55 E-value=0.029 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++.+++|+|++||||||+.+.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999997654
No 365
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.54 E-value=0.018 Score=57.24 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.-+++|+|++|+|||||++.++|.-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999874
No 366
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.54 E-value=0.039 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++.-+++|+|++|+|||||++.+.+.-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999743
No 367
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.54 E-value=0.036 Score=57.22 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999999987643
No 368
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.53 E-value=0.039 Score=54.89 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.7
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-..|..++|+||+|||||||...|...
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999999999864
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.52 E-value=0.024 Score=56.81 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997654
No 370
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.51 E-value=0.032 Score=57.62 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|.+|||||||++.+.|.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.51 E-value=0.033 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+..++|+|+.||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987644
No 372
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.51 E-value=0.032 Score=53.91 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.-+++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999865
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.46 E-value=0.034 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++++|++|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
No 374
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.46 E-value=0.035 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999877653
No 375
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.45 E-value=0.034 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 376
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.44 E-value=0.044 Score=57.16 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++++|++|+|||||++.+.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999953
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.44 E-value=0.029 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|+|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999997754
No 378
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.38 E-value=0.033 Score=54.51 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++.-+++|+|+.|+|||||++.+.+.-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 344579999999999999999999754
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.37 E-value=0.039 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+++|+|+.||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.35 E-value=0.041 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987643
No 381
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.33 E-value=0.042 Score=58.50 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
++..++|+||+|||||||...|...++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 356899999999999999999986653
No 382
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.33 E-value=0.037 Score=57.38 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|++|+|||||++.++|.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999865
No 383
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.33 E-value=0.045 Score=53.66 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
.-+.|+||+|+|||||++++..+.....+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~ 83 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNV 83 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 67899999999999999999998875443
No 384
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.038 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+.-+++|+|+.|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999994
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.29 E-value=0.038 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 386
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.035 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 387
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.27 E-value=0.035 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 388
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.037 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
.-+++|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.26 E-value=0.034 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999987643
No 390
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.25 E-value=0.034 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
.-+++|+|+.|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999963
No 391
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.24 E-value=0.042 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
-+++++|+.|+|||||++.+.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3799999999999999999999654
No 392
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.24 E-value=0.039 Score=54.03 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 393
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.22 E-value=0.04 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++.=+++|+|++|+|||||++.+.+.-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 344589999999999999999998653
No 394
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.22 E-value=0.039 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+.-+++|+|+.|+|||||++.+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3447999999999999999999963
No 395
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.20 E-value=0.041 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+|+.|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999865
No 396
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.20 E-value=0.039 Score=57.51 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|.+|||||||++.+.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 397
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.18 E-value=0.038 Score=52.67 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+.+..+.|+||+|+|||||++.+..++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999988753
No 398
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.025 Score=55.79 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
--+++|+|++|+|||||++.+.+.-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999753
No 399
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.17 E-value=0.037 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.13 E-value=0.038 Score=52.58 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987644
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.11 E-value=0.046 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
--+++|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.042 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+.-+++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 403
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.06 E-value=0.046 Score=58.21 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.2
Q ss_pred ccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 611 TIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 611 ~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
.++ ..-+++ .|.-++|+|+||+||||+...+++
T Consensus 134 ~~H-~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLH-GVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEE-SEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eee-EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 455 655666 799999999999999999999987
No 404
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.06 E-value=0.046 Score=62.09 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=32.1
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP 665 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~ 665 (779)
-+++|+++.|.|++|+|||||+.-++-..-...| ..+.|++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g------~~vl~~s 278 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG------KKVGLAM 278 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC------CCEEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC------CcEEEEe
Confidence 3789999999999999999999888876654334 2456665
No 405
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.04 E-value=0.048 Score=55.90 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+-.+++|+|++||||||+.+.|...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33579999999999999999886643
No 406
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.02 E-value=0.032 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=9.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998653
No 407
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.02 E-value=0.043 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
=+++|+|+.|+|||||++.+.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 379999999999999999999753
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.01 E-value=0.048 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.|+|||||++.+.+.-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
No 409
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.96 E-value=0.049 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+.-+++|+|+.|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.94 E-value=0.042 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 411
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.91 E-value=0.04 Score=54.67 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
-.++|+|++|+|||||++.+++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998753
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.91 E-value=0.049 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
....++|+|++||||||+.+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 413
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.89 E-value=0.048 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+|++|+|||||++.+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999864
No 414
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.84 E-value=0.047 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 415
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.84 E-value=0.051 Score=56.14 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|++|+|||||++.+.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 416
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.83 E-value=0.049 Score=52.72 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
=+++|+|+.|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 37999999999999999998754
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.82 E-value=0.049 Score=54.42 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+|..+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999997655
No 418
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.81 E-value=0.032 Score=55.24 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999954
No 419
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.78 E-value=0.052 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
++.-+++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999975
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.74 E-value=0.045 Score=56.44 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.2
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|.+++|.|+.||||||+.+.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999999998766
No 421
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.71 E-value=0.047 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.69 E-value=0.052 Score=56.83 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHh
Q 004004 623 GSKVAVCGSVGSGKSSLLSSIL 644 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iL 644 (779)
..+++|+|++||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999987
No 423
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.67 E-value=0.041 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++++|+.|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.66 E-value=0.048 Score=58.75 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
..++|+||+|||||||...|...++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 425
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.64 E-value=0.066 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++|+|++|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 426
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.63 E-value=0.067 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.4
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+++|+++.|.|++|+|||+|..-++-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999876653
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.60 E-value=0.057 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
...++|+||+|||||||...|...++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999987653
No 428
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.59 E-value=0.06 Score=57.06 Aligned_cols=26 Identities=46% Similarity=0.608 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++-+++++|+.|+|||||++.+.+.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999988764
No 429
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.54 E-value=0.052 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999975
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.48 E-value=0.064 Score=59.48 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.9
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.=++..++.++|++||||||+.+.|...+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998754
No 431
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.46 E-value=19 Score=41.43 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004004 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (779)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~lR~~L~~~iy 358 (779)
+..+..++..+..++...++..+...-..............+++..++..++..+..........++..++|..+...+.
T Consensus 27 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 106 (595)
T 2yl4_A 27 FLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSIL 106 (595)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445556655542111100011222222233333333444444444455677888999999998887
Q ss_pred HHHh
Q 004004 359 KRSM 362 (779)
Q Consensus 359 ~K~L 362 (779)
+..+
T Consensus 107 ~~~~ 110 (595)
T 2yl4_A 107 RQEV 110 (595)
T ss_dssp HSCH
T ss_pred cCCH
Confidence 7654
No 432
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.46 E-value=0.065 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+.++|+|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999987643
No 433
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.055 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999865
No 434
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.41 E-value=0.033 Score=62.44 Aligned_cols=39 Identities=31% Similarity=0.610 Sum_probs=32.2
Q ss_pred EEeeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE
Q 004004 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (779)
Q Consensus 618 l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i 657 (779)
..+-+|++++|+|++|+|||||++.|.+......| .+.+
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V 184 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISV 184 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEE
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccC-cEEE
Confidence 56779999999999999999999999987765555 4433
No 435
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.35 E-value=0.059 Score=54.68 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+|.+++|.|..||||||+.+.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999998765
No 436
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.32 E-value=0.065 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccC
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
.+++++|.+|+|||||++.+.|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 58999999999999999999997653
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.27 E-value=0.066 Score=57.30 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
..++|+||+|||||||...|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 438
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.21 E-value=0.055 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+.-+++|+|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 455799999999999999999974
No 439
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.18 E-value=0.074 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++|+|++|+|||||++.+.|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 379999999999999999998743
No 440
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.03 E-value=0.058 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|||+.|+|||||+++|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 441
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.03 E-value=0.036 Score=54.02 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=5.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
=+++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999876
No 442
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.01 E-value=0.17 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
-..|.=+.|+|+||+|||||...++.
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999998876
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.99 E-value=0.066 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
++..+.++|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 444
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.92 E-value=0.052 Score=51.66 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+.+..+.|+||+|+|||||++.+..++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999988754
No 445
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.89 E-value=0.068 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILG 645 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLG 645 (779)
+.=+++|+|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345899999999999999988874
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.86 E-value=0.071 Score=54.12 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
.+|.++++.|+.||||||+.+.|...++.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999877653
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.86 E-value=0.07 Score=52.29 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|+.|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6999999999999999999864
No 448
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.84 E-value=0.078 Score=54.92 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.2
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
++++.-+.|.||+|+|||||++++.+++.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45677799999999999999999998763
No 449
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.075 Score=52.94 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+++|+|++|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 450
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.77 E-value=0.065 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+..++|+|+.||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999987654
No 451
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.73 E-value=0.072 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
-+++|+|..|+|||||++.+++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999997653
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.72 E-value=0.09 Score=52.76 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.2
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
.+|.++++.|+.||||||+.+.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999876653
No 453
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.66 E-value=0.097 Score=54.86 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
++-.++++|.+|+|||||+++|.|.-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 345799999999999999999999753
No 454
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.57 E-value=0.093 Score=55.77 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=25.5
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+.+.|.|++|||||||...+...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988865
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.49 E-value=0.086 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 456
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.46 E-value=0.086 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
.-+++|+|+.|+|||||++.+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 457
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.39 E-value=0.091 Score=62.21 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++-+++|+|++|+|||||+++|+|.-
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999974
No 458
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.38 E-value=0.1 Score=52.80 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.8
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
++|.++++.|+.||||||+.+.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47999999999999999999999877653
No 459
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.35 E-value=0.099 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
No 460
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.30 E-value=0.47 Score=61.86 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=32.8
Q ss_pred cccccCCc--EEeeCCcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 610 PTIKLTDK--MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 610 ~~L~~~in--l~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
+.|. ++. .-+++|+.+.++||+|||||||...++-+-...
T Consensus 1067 ~~Ld-~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1067 LSLD-IALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp HHHH-HHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHH-HHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4455 554 469999999999999999999999999776654
No 461
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.24 E-value=0.04 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.+.-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.19 E-value=0.085 Score=53.12 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
++|.++++.|+.||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887764
No 463
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.19 E-value=0.1 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+|.+..++|+.||||||++.-++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999855554443
No 464
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.15 E-value=0.072 Score=59.91 Aligned_cols=26 Identities=42% Similarity=0.495 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
++|-+++|+|++|+|||||++.++|.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35677999999999999999999986
No 465
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.13 E-value=0.11 Score=53.16 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
.+|.++++.|+.||||||+.+.|...+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999876653
No 466
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.10 E-value=0.092 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
-+++|+|+.|+|||||++.+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999854
No 467
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.99 E-value=0.11 Score=52.01 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+|.++.+.|+.||||||+.+.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999877653
No 468
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.99 E-value=0.089 Score=57.37 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
++..++++|++|+|||||+++|+|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999997
No 469
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.93 E-value=0.067 Score=53.11 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCC-----CcCHHHHHHHHH
Q 004004 725 QKQRIQLARAVYSNSDVYIFDDPFS-----AVDAHTGTHLFK 761 (779)
Q Consensus 725 QKQRIaLARAly~~adI~LLDDp~S-----ALDa~t~~~If~ 761 (779)
+.-.-.|++.+..++.....+.|.. .+|....+++.+
T Consensus 163 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (221)
T 3gj0_A 163 EKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEH 204 (221)
T ss_dssp THHHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHH
Confidence 3445578899999998888887765 677777776654
No 470
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.85 E-value=0.1 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+..-+.++||+|+|||++.+++..+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344588999999999999999998763
No 471
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.83 E-value=0.27 Score=55.81 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+...++|+|+.|+||||++..|+..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3458999999999999999999976653
No 472
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.75 E-value=0.11 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCC
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
.+.|+||.|+|||||++.+..++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 78999999999999999999877543
No 473
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.62 E-value=0.1 Score=55.70 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCC-CCCeEEEcCeEEEEccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQS 667 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~-~G~~I~i~g~iayV~Q~ 667 (779)
+++| .+-|.||.|||||||+.-++-+.... .| +.+.|++=+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g------~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD------AVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT------CEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC------ceEEEEecc
Confidence 7899 99999999999999977666555432 13 456776543
No 474
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.56 E-value=0.089 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+|..++++|++|+|||||+++|+|..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57889999999999999999999974
No 475
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.38 E-value=0.64 Score=60.64 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=28.2
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCC
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~ 650 (779)
+++|+.+.|+||+|+|||+|..++.-+....
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8899999999999999999999998876654
No 476
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.36 E-value=0.13 Score=52.01 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
.+|.++.++|+.||||||++.-++..+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4699999999999999998877776664
No 477
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.33 E-value=0.12 Score=59.58 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-.++|+|..|+|||||++.|+|.-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999974
No 478
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.28 E-value=0.11 Score=57.20 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
..++|+||+|||||||...|...+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988654
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.26 E-value=0.057 Score=55.50 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=23.8
Q ss_pred cEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 617 nl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
....++| +.++||+|+|||+|++++.++.
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3445556 7899999999999999999865
No 480
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.70 E-value=0.054 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
+.-+++|+|++|+|||||++.+.+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4457999999999999999888753
No 481
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.21 E-value=0.098 Score=59.06 Aligned_cols=25 Identities=36% Similarity=0.747 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhcc
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGE 646 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe 646 (779)
.|=+++|+|++|+|||||++.++|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667999999999999999999987
No 482
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.19 E-value=0.16 Score=47.28 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
.+.-+.|.||+|+|||++.++|-.+.....+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 4556899999999999999999987765444
No 483
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.96 E-value=0.15 Score=56.83 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
-+++++|++|+|||||++.++|+-
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999874
No 484
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.95 E-value=0.12 Score=52.07 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.6
Q ss_pred EeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 619 ~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+.++...+.|.||.||||+|..+.|...+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567789999999999999999988765
No 485
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.69 E-value=0.14 Score=59.27 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=32.8
Q ss_pred EEEeeeEEEeccccccCCCcccccCCcEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 591 I~~~n~sFsw~~~~~~~~~~~L~~~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
|+..+..+.+++ +. -..|. +++ ++--.|+|+|++|+|||||++.|+|.-
T Consensus 14 i~~~~~~l~~~~---ea-l~~L~-~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 14 IENTNGRLMANP---EA-LKILS-AIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEETTEEEECH---HH-HHHHH-TCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEeCCCcEEECH---HH-HHHHH-hcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 333456666643 11 12455 432 234578999999999999999999974
No 486
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.67 E-value=0.17 Score=61.32 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEE-cCeEEEEccccccCCCcHHHHhccCCCCCHHHHHHHHHHccc--
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL-- 699 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i-~g~iayV~Q~pwI~ngTIreNIlfG~~~d~~~y~~vl~ac~L-- 699 (779)
..-+.++||+|+||||+++++.+.+....+ ...+ +..+.+++....+ .|+- ..| -.+++++++++...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~-p~~l~~~~~~~l~~~~l~-~g~~----~~g--~~~~~l~~~~~~~~~~~ 262 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDV-PEGLKGKRIVSLQMGSLL-AGAK----YRG--EFEERLKAVIQEVVQSQ 262 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCS-CTTSTTCEEEEECC------------------CHHHHHHHHHHHHHTTC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCC-chhhcCCeEEEeehHHhh-ccCc----cch--HHHHHHHHHHHHHHhcC
Confidence 345889999999999999999998743221 1111 1234444332211 1100 000 012333333332210
Q ss_pred ------hHHHhhc--------------------cCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 004004 700 ------NQDIEMW--------------------ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDA 753 (779)
Q Consensus 700 ------~~di~~L--------------------p~Gd~T~IGE~G~nLSGGQKQRIaLARAly~~adI~LLDDp~SALDa 753 (779)
-++++.+ ..|.-..||. -+..+..++.+..|+.++.+.+-+|+|+ .
T Consensus 263 ~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~a----t~~~~~~~~~~d~aL~rRf~~i~l~~p~----~ 334 (854)
T 1qvr_A 263 GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGA----TTLDEYREIEKDPALERRFQPVYVDEPT----V 334 (854)
T ss_dssp SSEEEEECCC-------------------HHHHHTTCCCEEEE----ECHHHHHHHTTCTTTCSCCCCEEECCCC----H
T ss_pred CCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEe----cCchHHhhhccCHHHHhCCceEEeCCCC----H
Confidence 1223222 2233333332 2455555588889999999999999996 4
Q ss_pred HHHHHHHHH
Q 004004 754 HTGTHLFKA 762 (779)
Q Consensus 754 ~t~~~If~~ 762 (779)
.....|++.
T Consensus 335 ~e~~~iL~~ 343 (854)
T 1qvr_A 335 EETISILRG 343 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444455543
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.62 E-value=0.18 Score=54.50 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
+.-.++|+|+.|+|||||++.+.+.+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457999999999999999999887643
No 488
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.43 E-value=0.16 Score=55.21 Aligned_cols=41 Identities=24% Similarity=0.497 Sum_probs=32.6
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~ 667 (779)
+++|+++.|.|+.|||||||...++...... | +.+.|++-+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~-g------~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKA-G------GTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T------CCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-C------CeEEEEECC
Confidence 7899999999999999999999888766543 3 346666654
No 489
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.35 E-value=0.15 Score=56.64 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|++|+|||||++.+.|.-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.35 E-value=0.081 Score=58.97 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCCCCCeEEEcCeEEEEcccc
Q 004004 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (779)
Q Consensus 624 ~~vaIvG~sGSGKSTLL~~iLGe~~~~~G~~I~i~g~iayV~Q~p 668 (779)
..++++|+.|+||||+...|.+.+... | .++.++.-+|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G------~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-G------LKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-H------CCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-C------CeEEEEeccc
Confidence 589999999999999999999988643 4 2455555444
No 491
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.21 E-value=0.17 Score=55.72 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++|+|.+|+|||||++++.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 492
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.99 E-value=0.15 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
.+.|+||.|+||||+++.+..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988753
No 493
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.85 E-value=0.14 Score=51.26 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.0
Q ss_pred eeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 620 IMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 620 I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+|+...+.+.||.|+||||+..+|..++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5666679999999999999999999986
No 494
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.81 E-value=0.17 Score=52.99 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
++.-+.++||+|+|||++.+++..++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3556899999999999999999887753
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.64 E-value=0.31 Score=49.89 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHhccccCCCC
Q 004004 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (779)
Q Consensus 622 ~G~~vaIvG~sGSGKSTLL~~iLGe~~~~~G 652 (779)
.+.-+.|+|++|+|||++.++|....+...+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~ 58 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQG 58 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCC
Confidence 3556889999999999999999988765544
No 496
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.44 E-value=0.14 Score=54.92 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCChhHHHHHHhccccC
Q 004004 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (779)
Q Consensus 621 ~~G~~vaIvG~sGSGKSTLL~~iLGe~~~ 649 (779)
..+..+.|+||+|+|||||++.+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988754
No 497
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.37 E-value=0.22 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 004004 625 KVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 625 ~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+++++|++|+|||||+++|.|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999854
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.30 E-value=0.2 Score=53.11 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 623 GSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 623 G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
+.-+.+.||+|+|||+|+.+|..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998876
No 499
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.06 E-value=0.094 Score=63.15 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCcEEeeCCcEEEEEcCCCCChhHHHHHHhcccc
Q 004004 615 TDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (779)
Q Consensus 615 ~inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~~ 648 (779)
..++.+++|+.+.++||+|+|||||.++|.+++.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 3467788999999999999999999999999875
No 500
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=87.97 E-value=0.22 Score=53.69 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=25.9
Q ss_pred CcEEeeCCcEEEEEcCCCCChhHHHHHHhccc
Q 004004 616 DKMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (779)
Q Consensus 616 inl~I~~G~~vaIvG~sGSGKSTLL~~iLGe~ 647 (779)
+.++++---.|+++|.+++|||||++.+.+.-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 44555555579999999999999999999764
Done!