BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004005
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 204/693 (29%), Positives = 313/693 (45%), Gaps = 96/693 (13%)
Query: 78 CSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
CS L L ++ N L G + + + + L+ L+VSSN L S + L S+E L
Sbjct: 98 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 136 MLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS-N 192
LS N + + + LK N+I ++ S + L L +SS N
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-----NLEFLDVSSNN 211
Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 252
+ G FL L+++D+S K++G+F + + T+L+ L + ++ GP +P
Sbjct: 212 FSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPP 265
Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG---------- 302
K L+ L ++ N G IP + +L + S N G++P FG
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 303 ---------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL- 346
M+ L++LDLS N +GE+PE L +L L LS+NN G +
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 347 --FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404
+N T LQ L L+ N F G+IP +LS CS L L+L+ N L G IP LG+L++L
Sbjct: 386 PNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464
+ + + N LEG IP E + +L+ L + N+++G +PS
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------- 487
Query: 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXX 524
NC++L + LS NRL G IP W+ L L+ L L +N+ G +
Sbjct: 488 -------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 525 XXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576
+G IP N + Y + + E G LE
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE----CHGAGNLLEF 596
Query: 577 Q---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLT 623
Q + ++ +T+N + +Y G LD+S N L G+IP +IG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 683
+ LNL HN+++GSIP +L+ + LDLS+NKL+G+IP + L L ++ NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 684 SGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
SG IPE QF TF + + N LCG PLP C
Sbjct: 717 SGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 149/523 (28%), Positives = 229/523 (43%), Gaps = 111/523 (21%)
Query: 66 GTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125
G SG +D C V+L+ L ++SN+ +P+ + + ++L+ LD+S N+L+G S +
Sbjct: 187 GNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA- 242
Query: 126 LVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 185
+ T ++ L +S+N F PI PL L+ + N+ EI + L L
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLT 297
Query: 186 TLSLSSNYGDGFIFPKF------------------------LYHQHDLEYVDLSHIKMNG 221
L LS N+ G + P F L L+ +DLS + +G
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
E P L + L TL L +++ +GP L + L++L + NN G IP + +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 280 --LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 337
L SL++ S N L G+IPSS G++ L+ L L N L GEIP+ L
Sbjct: 418 SELVSLHL---SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY---------- 464
Query: 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
+ L+ L L+ N GEIP LS C++L + L+NN L G+IP+W
Sbjct: 465 ---------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS------- 450
+G L L + + NN G IP E SL LD++ N +G++P+ S
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 451 --------------IKQVHLSKNMLHGQLKRG-------------------------TFF 471
K+ H + N+L Q R TF
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
N S++ LD+SYN L+G IP + + L L LGHN++ G +
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 232/498 (46%), Gaps = 73/498 (14%)
Query: 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL--PIHSHKRLRQLDVSNNNIRGH 271
LS+ +NG + + + L +L L +SL+GP + S L+ L+VS+N +
Sbjct: 84 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 272 IPVKIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
V G L SL V + S N++ G+ + G +K L I S N ++G++
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 195
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNF----NLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 381
CVNL+FL +S+NN FS + + LQ L + GN+ G+ +++S C+ L+
Sbjct: 196 VSRCVNLEFLDVSSNN-----FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ--LDSLQILDISDNNIS 439
L +++N +G IP L LQY+ + N G IP +F D+L LD+S N+
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFY 307
Query: 440 GSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
G++P F ++ + LS N G+L T L LDLS+N +G +P+ + LS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 499 -QLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNSSSP 557
L L L NN G PI P L ++ N+
Sbjct: 368 ASLLTLDLSSNNFSG------------------------PILP-----NLCQNPKNTLQ- 397
Query: 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY-QGKV------LSLLSGLDLSCNK 610
E++ G G + E + ++++ Y G + LS L L L N
Sbjct: 398 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670
L G IP ++ + ++TL L N+LTG IPS SN ++ + LSNN+L G+IP + L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 671 KTLEVFSVAYNNLSGEIP 688
+ L + ++ N+ SG IP
Sbjct: 514 ENLAILKLSNNSFSGNIP 531
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 293 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 351
++GS+ S F L LDLS N L+G + ++G C L+FL +S+N L
Sbjct: 89 INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 139
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 408
F G++ L K +SLE L L+ NS+ G + W+ L+++
Sbjct: 140 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 468
+ N + G + V C +L+ LD+S NN S +P +++ + +S N L G R
Sbjct: 185 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 241
Query: 469 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 527
C+ L L++S N+ G IP L L +L L N GE+
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 528 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 581
+G +PP F + +L ES + N+ S + + + G + + + E+
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 582 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 624
E T A + + G +L + L L L N G IPP + N +
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419
Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
+ +L+LS N L+G+IPS+ +L + L L N L G+IP +L+ +KTLE + +N+L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 685 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 717
GEIP + N S N +P I R
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 152/350 (43%), Gaps = 32/350 (9%)
Query: 70 SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
+G + L + L L+++ N L G++P + +++ LR L + N L G I L+++
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYV 465
Query: 130 TSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTL 187
++E L+L N +IP L N + L + NN + EI + I L L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLS---NCTNLNWISLSNNRLTGEIPK---WIGRLENLAIL 519
Query: 188 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV------- 240
LS+N G I P L L ++DL+ NG P + + + K+ F+
Sbjct: 520 KLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 241 -NDSLA----GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKI--GDVLP------SLYVFN 287
ND + G L R QL+ + +I ++ G P S+ +
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
S N L G IP G+M +L IL+L +N ++G IP+ + L L LS+N L G +
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIP 697
Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG-KIPR 396
LT L + L N G IP+ + +LNN L G +PR
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 204/695 (29%), Positives = 312/695 (44%), Gaps = 100/695 (14%)
Query: 78 CSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
CS L L ++ N L G + + + + L+ L+VSSN L S + L S+E L
Sbjct: 95 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 136 MLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS-N 192
LS N + + + LK N+I ++ S + L L +SS N
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-----NLEFLDVSSNN 208
Query: 193 YGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI 252
+ G FL L+++D+S K++G+F + + T+L+ L + ++ GP +P
Sbjct: 209 FSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPP 262
Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFG---------- 302
K L+ L ++ N G IP + +L + S N G++P FG
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 303 ---------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
M+ L++LDLS N +GE+PE L +L L LS+NN G +
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 348 SRNFNLT-----NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
NL LQ L L+ N F G+IP +LS CS L L+L+ N L G IP LG+L+
Sbjct: 383 P---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 462
+L+ + + N LEG IP E + +L+ L + N+++G +PS
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--------------- 484
Query: 463 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXX 522
NC++L + LS NRL G IP W+ L L+ L L +N+ G +
Sbjct: 485 ---------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 535
Query: 523 XXXXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574
+G IP N + Y + + E G L
Sbjct: 536 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE----CHGAGNLL 591
Query: 575 EKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGN 621
E Q + ++ +T+N + +Y G LD+S N L G+IP +IG+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681
+ + LNL HN+++GSIP +L+ + LDLS+NKL+G+IP + L L ++ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 682 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
NLSG IPE QF TF + + N LCG PLP C
Sbjct: 712 NLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 149/523 (28%), Positives = 229/523 (43%), Gaps = 111/523 (21%)
Query: 66 GTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125
G SG +D C V+L+ L ++SN+ +P+ + + ++L+ LD+S N+L+G S +
Sbjct: 184 GNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA- 239
Query: 126 LVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 185
+ T ++ L +S+N F PI PL L+ + N+ EI + L L
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLT 294
Query: 186 TLSLSSNYGDGFIFPKF------------------------LYHQHDLEYVDLSHIKMNG 221
L LS N+ G + P F L L+ +DLS + +G
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 222 EFPNWLLENNTKLETLFLVNDSLAGPF--RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV 279
E P L + L TL L +++ +GP L + L++L + NN G IP + +
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 280 --LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 337
L SL++ S N L G+IPSS G++ L+ L L N L GEIP+ L
Sbjct: 415 SELVSLHL---SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY---------- 461
Query: 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
+ L+ L L+ N GEIP LS C++L + L+NN L G+IP+W
Sbjct: 462 ---------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS------- 450
+G L L + + NN G IP E SL LD++ N +G++P+ S
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Query: 451 --------------IKQVHLSKNMLHGQLKRG-------------------------TFF 471
K+ H + N+L Q R TF
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514
N S++ LD+SYN L+G IP + + L L LGHN++ G +
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 232/498 (46%), Gaps = 73/498 (14%)
Query: 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL--PIHSHKRLRQLDVSNNNIRGH 271
LS+ +NG + + + L +L L +SL+GP + S L+ L+VS+N +
Sbjct: 81 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 272 IPVKIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
V G L SL V + S N++ G+ + G +K L I S N ++G++
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNF----NLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 381
CVNL+FL +S+NN FS + + LQ L + GN+ G+ +++S C+ L+
Sbjct: 193 VSRCVNLEFLDVSSNN-----FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
Query: 382 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ--LDSLQILDISDNNIS 439
L +++N +G IP L LQY+ + N G IP +F D+L LD+S N+
Sbjct: 248 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFY 304
Query: 440 GSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS 498
G++P F ++ + LS N G+L T L LDLS+N +G +P+ + LS
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 499 -QLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESYSNSSSP 557
L L L NN G PI P L ++ N+
Sbjct: 365 ASLLTLDLSSNNFSG------------------------PILP-----NLCQNPKNTLQ- 394
Query: 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY-QGKV------LSLLSGLDLSCNK 610
E++ G G + E + ++++ Y G + LS L L L N
Sbjct: 395 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670
L G IP ++ + ++TL L N+LTG IPS SN ++ + LSNN+L G+IP + L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 671 KTLEVFSVAYNNLSGEIP 688
+ L + ++ N+ SG IP
Sbjct: 511 ENLAILKLSNNSFSGNIP 528
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 293 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 351
++GS+ S F L LDLS N L+G + ++G C L+FL +S+N L
Sbjct: 86 INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 136
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 408
F G++ L K +SLE L L+ NS+ G + W+ L+++
Sbjct: 137 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 181
Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 468
+ N + G + V C +L+ LD+S NN S +P +++ + +S N L G R
Sbjct: 182 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 238
Query: 469 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 527
C+ L L++S N+ G IP L L +L L N GE+
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 528 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 581
+G +PP F + +L ES + N+ S + + + G + + + E+
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 582 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 624
E T A + + G +L + L L L N G IPP + N +
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 416
Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
+ +L+LS N L+G+IPS+ +L + L L N L G+IP +L+ +KTLE + +N+L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 685 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 717
GEIP + N S N +P I R
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 152/350 (43%), Gaps = 32/350 (9%)
Query: 70 SGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHL 129
+G + L + L L+++ N L G++P + +++ LR L + N L G I L+++
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYV 462
Query: 130 TSIEELMLSNNYF--QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTL 187
++E L+L N +IP L N + L + NN + EI + I L L
Sbjct: 463 KTLETLILDFNDLTGEIPSGLS---NCTNLNWISLSNNRLTGEIPK---WIGRLENLAIL 516
Query: 188 SLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV------- 240
LS+N G I P L L ++DL+ NG P + + + K+ F+
Sbjct: 517 KLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 241 -NDSLA----GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKI--GDVLP------SLYVFN 287
ND + G L R QL+ + +I ++ G P S+ +
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
S N L G IP G+M +L IL+L +N ++G IP+ + L L LS+N L G +
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIP 694
Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG-KIPR 396
LT L + L N G IP+ + +LNN L G +PR
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 59/231 (25%)
Query: 536 GPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 594
GPIPP T LH Y ++ F S + + +F+ ++
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--------QIKTLVTLDFSYNALSGTLP 142
Query: 595 GKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGSIPSTFSNL----- 646
+ SL L G+ N++ G IP G+ +++ T + +S N LTG IP TF+NL
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 647 -----------------------------------------KHVESLDLSNNKLNGKIPH 665
K++ LDL NN++ G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 666 QLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716
L +LK L +V++NNL GEIP+ F+ S+Y N LCG PLP C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 125/294 (42%), Gaps = 64/294 (21%)
Query: 370 IPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
IP SL+ L LY+ N+L+G IP + LT+L Y+ + + ++ G IP Q+ +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 429 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
LD S N +SG+LP L +LV + NR++G
Sbjct: 128 VTLDFSYNALSGTLPPSISSL------------------------PNLVGITFDGNRISG 163
Query: 489 SIPDWVDGLSQL-SHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 547
+IPD S+L + + + N L G+ IPP F N L
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGK------------------------IPPTFANLNL 199
Query: 548 H-ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV-LSL-LSGL 604
S + + +F S + Q +N F+ GKV LS L+GL
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL----------GKVGLSKNLNGL 249
Query: 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
DL N++ G +P + L + +LN+S NNL G IP NL+ + +NNK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 28/216 (12%)
Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
T+L L++ + +++G + K L LD S N + G +P I LP+L N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159
Query: 292 ALDGSIPSSFGNM-KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH---LF 347
+ G+IP S+G+ K + +S N LTG+IP A +NL F+ LS N L+G LF
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLF 217
Query: 348 SRNFNL--------------------TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 387
+ N NL L L NR G +PQ L++ L L ++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 388 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
N+L G+IP+ GNL R NN P+ C
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 97/242 (40%), Gaps = 49/242 (20%)
Query: 297 IPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
IPSS N+ +L L + N+L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 415
L +L + G IP LS+ +L L + N+L G +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 416 GPIPVEFCQLDSL-QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ---------- 464
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 465 ------------LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 512
G +L LDL NR+ G++P + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 513 EV 514
E+
Sbjct: 283 EI 284
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 609 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 668
N L+G IPP I LT++ L ++H N++G+IP S +K + +LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 669 ELKTLEVFSVAYNNLSGEIPEWKAQFA 695
L L + N +SG IP+ F+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 17/244 (6%)
Query: 77 LCSLVHLQELYIAS-NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L +L +L LYI N+L G +P +A +T L L ++ ++G+I L + ++ L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130
Query: 136 MLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 193
S N +P S+ L N + + N I I +S+ + F ++++S N
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITF---DGNRISGAIPDSYGSFSKLFT--SMTISRNR 185
Query: 194 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL-PI 252
G I P F +L +VDLS + G+ + L ++ + + L +SLA F L +
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 253 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 312
K L LD+ NN I G +P + L L+ N S N L G IP GN++ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 313 SNNH 316
+NN
Sbjct: 299 ANNK 302
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 615 IPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 673
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 674 EVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712
+YN LSG +P + +++GN +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 624 RIQTLNLSHNNLTGS--IPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLEVFSVAY 680
R+ L+LS NL IPS+ +NL ++ L + N L G IP + +L L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 681 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDS 740
N+SG IP++ +Q T + N LP I P + GN + D
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 741 FFITFTTSYVI 751
F TS I
Sbjct: 171 SFSKLFTSMTI 181
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
N+++LAL N L H S LTNL +L L GN+ K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL 449
LT L Y+ + +N L+ F +L +L LD+ DNN SLP F L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKL 180
Query: 450 S-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSH 502
+ +KQ+ L+ N L + G F +SL + L N + + D W+ SQ
Sbjct: 181 TQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHPG 236
Query: 503 LILGHNNLEGE 513
L+ G+ NL+ +
Sbjct: 237 LVFGYLNLDPD 247
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHL 456
L LT L Y+I+ N L+ F +L +L+ L + +N + F L+ + ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 457 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 511
+ N L L +G F ++L LDLSYN+L S+P+ V D L+QL L L N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
N+++LAL N L H S LTNL +L L GN+ K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
LT L Y+ + +N L+ F +L +L LD+S N + F L+
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 451 -IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 509
+K + L +N L + G F +SL + L N + + P G+ LS I H+
Sbjct: 182 QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSG 236
Query: 510 L 510
+
Sbjct: 237 V 237
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 676
LT + LNL+HN L F L ++ LDLS N+L +P +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLY 189
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 79 SLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEEL 135
SL++L+ELY+ SN L G+LP ++T L +LD+ +NQLT S+ LVHL E
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 169
M N ++P +E L + + L + + N++K+
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 429 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
QIL + DN I+ P F L ++K+++L N L G L G F + + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 488 -----------------------GSIPDWVDGLSQLSHLILGHNNLE 511
+P ++ L+ L+HL L N L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L ++N + P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQ+L +SN + P +AN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
+ +NN + PL + L + N++K
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLK 230
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
+I + LN L LSSN L L+ + S ++
Sbjct: 119 ITDIDP--------LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFSSNQVTDLK 167
Query: 224 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 283
P L N T LE L + ++ ++ L ++ L L +NN I P+ I L L
Sbjct: 168 P---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDEL 222
Query: 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
+ N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 223 SLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 274
Query: 344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR 403
S LT L L+L N+ P S K + LY NN S + + +LT+
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTK 328
Query: 404 LQYIIMPNNHL 414
LQ + NN +
Sbjct: 329 LQRLFFSNNKV 339
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 655
K L+ L+ L+LS N I I G LT +Q L+ S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 656 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L ++N + P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQ+L +SN + P +AN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
+ +NN + PL + L + N++K
Sbjct: 201 IATNNQIS---DITPLGILTNLDELSLNGNQLK 230
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
+I + LN L LSSN L L+ + S ++
Sbjct: 119 ITDIDP--------LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFSSNQVTDLK 167
Query: 224 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 283
P L N T LE L + ++ ++ L ++ L L +NN I P+ I L L
Sbjct: 168 P---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDEL 222
Query: 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
+ N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 223 SLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 274
Query: 344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR 403
S LT L L+L N+ P S K + LY NN S + + +LT+
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTK 328
Query: 404 LQYIIMPNNHL 414
LQ + NN +
Sbjct: 329 LQRLFFYNNKV 339
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 655
K L+ L+ L+LS N I I G LT +Q L+ S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 656 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L ++N + P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQ+L +SN + P +AN+T+L LD+SSN+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 136 MLSNNYFQIPISLEPLFNYSRLKI 159
+ +NN L L N L +
Sbjct: 201 IATNNQISDITPLGILTNLDELSL 224
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 33/311 (10%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 223
+I + LN L LSSN L L+ ++ S ++
Sbjct: 119 ITDIDP--------LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLNFSSNQVTDLK 167
Query: 224 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 283
P L N T LE L + ++ ++ L ++ L L +NN I P+ I L L
Sbjct: 168 P---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDEL 222
Query: 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
+ N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 223 SLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 274
Query: 344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR 403
S LT L L+L N+ P S K + LY NN S + + +LT+
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTK 328
Query: 404 LQYIIMPNNHL 414
LQ + NN +
Sbjct: 329 LQRLFFYNNKV 339
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 655
K L+ L+ L+LS N I I G LT +Q LN S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 656 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 291 NALDGSIPSSFGNMKFLQILDLSNN--------------------HLTG----EIPEHLA 326
NAL G ++F + L+ LDLS+N HL E+ L
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 386
G LQ+L L +NNLQ + +L NL L L GNR + SL+ L L+
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 387 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDN 436
N + P +L RL + + N+L +P E L SLQ L ++DN
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN-HLE 415
Q + L GNR S C +L L+L++N+L G LT L+ + + +N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 416 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCS 474
P F L L L + + P F L+ Q ++L N L L TF +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLG 152
Query: 475 SLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL 510
+L L L NR+ S+P+ GL L L+L N++
Sbjct: 153 NLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHV 188
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHG 463
Q I + N + F +L IL + N ++G + F L++ +Q+ LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 512
+ TF L TL L L P GL+ L +L L NNL+
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 278 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 337
D L LY+ NS+ L P+ N+ L++LDLS+N LT +P L C L++
Sbjct: 247 DFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYF 300
Query: 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL--YLNNN 388
+N + + NL NLQ+L +EGN + + L++ S+ GL YL +N
Sbjct: 301 FDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTE-KSVTGLIFYLRDN 351
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNF--------------NLTNLQWLQLEGNRFVGEIP 371
A+ NLQ +S N + +R + NL+NL+ L L NR +P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LP 286
Query: 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 415
L C L+ Y +N ++ +P GNL LQ++ + N LE
Sbjct: 287 AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 83 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT 118
L LY+ N L LP + N+++LR+LD+S N+LT
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT 283
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 641
L+ L L+ N L +P +I NL+ ++ L+LSHN LT S+P+
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA 287
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 346
N + ++D P++F + L L L L E+ L G LQ+L L +N LQ
Sbjct: 90 NAQLRSVD---PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQY 406
+L NL L L GNR ++ SL+ L L+ N + P +L RL
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 407 IIMPNNHLEGPIPVE-FCQLDSLQILDISDN 436
+ + N+L +P E L +LQ L ++DN
Sbjct: 206 LYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 416
Q + L GNR S C +L L+L++N +L +I
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID--------------------- 72
Query: 417 PIPVEFCQLDSLQILDISDNNISGSL-PSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCS 474
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F +
Sbjct: 73 --AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129
Query: 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+L L L N L D L L+HL L N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 619 IGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 677
+GNLT + H N S+P F L ++ L L N++ PH +L L
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 678 VAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 709
+ NNLS E A N ++C
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 346
N + ++D P++F + L L L L E+ L G LQ+L L +N LQ
Sbjct: 89 NAQLRSVD---PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALP 144
Query: 347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQY 406
+L NL L L GNR ++ SL+ L L+ N + P +L RL
Sbjct: 145 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 204
Query: 407 IIMPNNHLEGPIPVE-FCQLDSLQILDISDN 436
+ + N+L +P E L +LQ L ++DN
Sbjct: 205 LYLFANNLSA-LPTEALAPLRALQYLRLNDN 234
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 416
Q + L GNR S C +L L+L++N +L +I
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID--------------------- 71
Query: 417 PIPVEFCQLDSLQILDISDNNISGSL-PSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCS 474
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F +
Sbjct: 72 --AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 128
Query: 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+L L L N L D L L+HL L N +
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 619 IGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 677
+GNLT + H N S+P F L ++ L L N++ PH +L L
Sbjct: 151 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 678 VAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 709
+ NNLS E A N ++C
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 76/321 (23%)
Query: 234 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 293
LE+L +SL LP + L+ L V NNN++ + D+ P L S N L
Sbjct: 93 LESLVASCNSLTELPELP----QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQL 143
Query: 294 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---------- 343
+ +P N FL+I+D+ NN L + L +L+F+A NN L+
Sbjct: 144 EK-LPE-LQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAGNNQLEELPELQNLPF 196
Query: 344 -GHLFSRNFNLTNLQWLQLE------GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR 396
+++ N +L L L L GN + E+P+ L L +Y +NN LL +P
Sbjct: 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTLPD 254
Query: 397 WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG--SLPS---------- 444
+L L +N+L +P E Q SL LD+S+N SG LP
Sbjct: 255 LPPSLEALNVR---DNYLTD-LP-ELPQ--SLTFLDVSENIFSGLSELPPNLYYLNASSN 307
Query: 445 -----CFHPLSIKQVHLSKN------MLHGQLKR--GTFFNCSS-------LVTLDLSYN 484
C P S++++++S N L +L+R +F + + L L + YN
Sbjct: 308 EIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN 367
Query: 485 RLN--GSIPDWVDGLSQLSHL 503
L IP+ V+ L SHL
Sbjct: 368 PLREFPDIPESVEDLRMNSHL 388
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 93/239 (38%), Gaps = 62/239 (25%)
Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359
SF +++ L+IL LS NH+ + +G N L NL L
Sbjct: 83 SFKHLRHLEILQLSRNHI-----RTIEIGAFN--------------------GLANLNTL 117
Query: 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRW----LGNLTRLQYI- 407
+L NR + S L+ L+L NN + +IP LG L RL YI
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 408 --------------IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ 453
+ N E P +LD LD+S N++S P F L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE---LDLSGNHLSAIRPGSFQGL---- 230
Query: 454 VHLSK-NMLHGQLK---RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508
+HL K M+ Q++ R F N SLV ++L++N L D L L + L HN
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 587 KNIAYIYQGKV--LSLLSGLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 643
K ++YI +G LS L L+L+ CN + IP + L ++ L+LS N+L+ P +F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 644 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
L H++ L + +++ + L++L ++A+NNL+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 80 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 139
L HL+ L ++ N +R + +L L++ N+LT +I + V+L+ ++EL L N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145
Query: 140 NYFQIPISLEPLFNYSRL 157
N PI P + ++R+
Sbjct: 146 N----PIESIPSYAFNRI 159
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 75 QGLCSLVHLQELYIAS------NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
+ L L HL++L + + N LR LP +A + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
L ++EL+L NN Q +++PL + RL + N + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
LD+S+N +R P L L V S NAL+ N+ LQ L L NN L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 321 IPEHLAVGCVNLQFLALSNNNL 342
V C L L L N+L
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 75 QGLCSLVHLQELYIAS------NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
+ L L HL++L + + N LR LP +A + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 170
L ++EL+L NN Q +++PL + RL + N + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
LD+S+N +R P L L V S NAL+ N+ LQ L L NN L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 321 IPEHLAVGCVNLQFLALSNNNL 342
V C L L L N+L
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 33/238 (13%)
Query: 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 267
DL+ ++ IK +G+F N L+N L TL L+N+ ++ +L +L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKN--LKN---LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 268 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 327
++ +P K+ L L V N + + S+ F + + +++L N L E+ A
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 328 -GCVNLQFLALSNNNL----QG--------HLFSRNFN---------LTNLQWLQLEGNR 365
G L ++ +++ N+ QG HL L NL L L N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
SL+ L L+LNNN L+ K+P L + +Q + + NN++ +FC
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647
NI I QG SL + L L NK+ + L + L LS N+++ + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685
H+ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
L ++ DL K+ +PP L+L +N +T F NLK++ +L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
K++ P L LE ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--- 660
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 661 GKIPHQLVELKTLE 674
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL- 449
L K+P+ L T L + + NN + +F L +L L + +N IS P F PL
Sbjct: 43 LEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 509
+++++LSKN QLK +L L + N + +GL+Q+ + LG N
Sbjct: 101 KLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 510 LE 511
L+
Sbjct: 157 LK 158
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 33/238 (13%)
Query: 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 267
DL+ ++ IK +G+F N L+N L TL L+N+ ++ +L +L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKN--LKN---LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 268 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 327
++ +P K+ L L V N + + S+ F + + +++L N L E+ A
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 328 -GCVNLQFLALSNNNL----QG--------HLFSRNFN---------LTNLQWLQLEGNR 365
G L ++ +++ N+ QG HL L NL L L N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 423
SL+ L L+LNNN L+ K+P L + +Q + + NN++ +FC
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647
NI I QG SL + L L NK+ + L + L LS N+++ + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685
H+ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657
L ++ DL K+ +PP L+L +N +T F NLK++ +L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 658 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
K++ P L LE ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--- 660
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 661 GKIPHQLVELKTLE 674
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL- 449
L K+P+ L T L + + NN + +F L +L L + +N IS P F PL
Sbjct: 43 LEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 509
+++++LSKN QLK +L L + N + +GL+Q+ + LG N
Sbjct: 101 KLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 510 LE 511
L+
Sbjct: 157 LK 158
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 132 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 186
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 187 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 238
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 76 GLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L LT++E
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 202
Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
L+ +NN + PL + L + N++K
Sbjct: 203 SLIATNNQIS---DITPLGILTNLDELSLNGNQLK 234
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 36/312 (11%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 67 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD-LSHIKMNGE 222
+I + LN L LSSN L L + + ++ +K
Sbjct: 124 ITDIDP--------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--- 172
Query: 223 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 282
L N T LE L + ++ ++ L ++ L L +NN I P+ I L
Sbjct: 173 -----LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDE 225
Query: 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
L + N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 226 LSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQI 277
Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
S LT L L+L N+ P S K + LY NN S + + +LT
Sbjct: 278 SN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLT 331
Query: 403 RLQYIIMPNNHL 414
+LQ + NN +
Sbjct: 332 KLQRLFFYNNKV 343
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 131 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 185
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 186 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 237
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 76 GLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L LT++E
Sbjct: 150 ALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 201
Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
L+ +NN + PL + L + N++K
Sbjct: 202 SLIATNNQIS---DITPLGILTNLDELSLNGNQLK 233
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 36/312 (11%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 66 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 164 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD-LSHIKMNGE 222
+I + LN L LSSN L L + + ++ +K
Sbjct: 123 ITDIDP--------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--- 171
Query: 223 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 282
L N T LE L + ++ ++ L ++ L L +NN I P+ I L
Sbjct: 172 -----LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDE 224
Query: 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342
L + N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 225 LSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQI 276
Query: 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
S LT L L+L N+ P S K + LY NN S + + +LT
Sbjct: 277 SN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLT 330
Query: 403 RLQYIIMPNNHL 414
+LQ + NN +
Sbjct: 331 KLQRLFFANNKV 342
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGNQV---TDLKPLANLTTLERLDISS 181
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 182 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 233
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 76 GLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
L+ +NN + PL + L + N++K
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLK 229
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 146/330 (44%), Gaps = 38/330 (11%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 164 NNEIK--AEITESHSLIAPKFQLNTLS-------LSS----NYGDGFIFPKFLYHQHDLE 210
+I +T + L + NT+S L+S N+G+ K L + LE
Sbjct: 119 ITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 211 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG 270
+D+S K++ +L T LE+L N+ ++ L I ++ L +L ++ N ++
Sbjct: 176 RLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD 230
Query: 271 HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330
+ L L + NN ++ L + + L L L N ++ P G
Sbjct: 231 IGTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP---LAGLT 282
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
L L L+ N L+ S NL NL +L L N P +S + L+ L+ +NN +
Sbjct: 283 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 338
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
L NLT + ++ +N + P+
Sbjct: 339 --SDVSSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 411
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGNQV---TDLKPLANLTTLERLDISS 181
Query: 412 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 469
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 182 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 233
Query: 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 76 GLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L LT++E
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVLAKLTNLE 197
Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168
L+ +NN + PL + L + N++K
Sbjct: 198 SLIATNNQIS---DITPLGILTNLDELSLNGNQLK 229
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 145/330 (43%), Gaps = 38/330 (11%)
Query: 104 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 163
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 164 NNEIK--AEITESHSLIAPKFQLNTLS-------LSS----NYGDGFIFPKFLYHQHDLE 210
+I +T + L + NT+S L+S N+G+ K L + LE
Sbjct: 119 ITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 211 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG 270
+D+S K++ +L T LE+L N+ ++ L I ++ L +L ++ N ++
Sbjct: 176 RLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD 230
Query: 271 HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330
+ L L + NN ++ L + + L L L N ++ P G
Sbjct: 231 IGTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP---LAGLT 282
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
L L L+ N L+ S NL NL +L L N P +S + L+ L+ NN +
Sbjct: 283 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 338
Query: 391 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
L NLT + ++ +N + P+
Sbjct: 339 --SDVSSLANLTNINWLSAGHNQISDLTPL 366
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 64/267 (23%)
Query: 275 KIGDVLPSLYVFNNSMNALDGSI----PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330
++ +V S+ V +N + SI +F +++ L+IL LS N + + VG
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGAF 79
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
N L +L L+L NR Q+ S L L+L NN +
Sbjct: 80 N--------------------GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 391 -------LGKIPRW----LGNLTRLQYIIMPNNHLEGPIPVEF-----CQLDS------- 427
++P LG L RL+YI EG + + + C L
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 428 --LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ---LKRGTFFNCSSLVTLDL 481
L+ L++S N + P F L S++++ L +H Q ++R F + SL L+L
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWL----MHAQVATIERNAFDDLKSLEELNL 233
Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHN 508
S+N L D L +L + L HN
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 429 QILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
+ L++ +N+I F H ++ + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 547
+ LS+L L L +N +E S P L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV------------------PSLRRLDL 138
Query: 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607
E ++ E + S +G + N N+ I L L L+LS
Sbjct: 139 GEL--------KRLE-YISEAAFEGLV---NLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 667
N+L P LT ++ L L H + + F +LK +E L+LS+N L +PH L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 77 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
L +LV L+EL ++ N L P +TSLR L + Q+ +I + L S+EEL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELN 232
Query: 137 LS-NNYFQIPISL-EPLFNYSRLKI 159
LS NN +P L PL R+ +
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 676
P + L R++ L LS N L P +F L + L L + ++ + +LK+LE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 677 SVAYNNL 683
++++NNL
Sbjct: 232 NLSHNNL 238
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 9/223 (4%)
Query: 287 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 346
N ++ DG + S N +D S+ LT IP ++ L + ++L
Sbjct: 1 NEALCKKDGGVCSCNNNK---NSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKA 56
Query: 347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQY 406
F R LT L+ L L N+ + +LE L++ +N L L L
Sbjct: 57 FHR---LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 407 IIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQL 465
+ + N L+ P F L L L + N + F L S+K++ L N L ++
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172
Query: 466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508
G F + L TL L N+L D L +L L L N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-P 417
L L+ N+ ++ + + L LYLN+N L L L+ + + +N L+ P
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 418 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSL 476
I V F QL +L L + N + P F L+ + + L N L L +G F +SL
Sbjct: 102 IGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
L L N+L D L++L L L +N L+
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 601 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
L+ L L N+L +PP++ +LT++ L+L +N L F L ++ L L NN+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 660 NGKIPH----QLVELKTLEVFSVAYNNLSGEIPE 689
++P +L ELKTL++ NN +PE
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
LDL NKL LT+++ L L+ N L F LK++E+L +++NKL +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 664 P----HQLVELKTLEV 675
P QLV L L +
Sbjct: 101 PIGVFDQLVNLAELRL 116
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 64/267 (23%)
Query: 275 KIGDVLPSLYVFNNSMNALDGSI----PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330
++ +V S+ V +N + SI +F +++ L+IL LS N + + VG
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGAF 79
Query: 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 390
N L +L L+L NR Q+ S L L+L NN +
Sbjct: 80 N--------------------GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 391 -------LGKIPRW----LGNLTRLQYIIMPNNHLEGPIPVEF-----CQLDS------- 427
++P LG L RL+YI EG + + + C L
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 428 --LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ---LKRGTFFNCSSLVTLDL 481
L+ L++S N + P F L S++++ L +H Q ++R F + SL L+L
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWL----MHAQVATIERNAFDDLKSLEELNL 233
Query: 482 SYNRLNGSIPDWVDGLSQLSHLILGHN 508
S+N L D L +L + L HN
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 77 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
L +LV L+EL ++ N L P +TSLR L + Q+ +I + L S+EEL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELN 232
Query: 137 LS-NNYFQIPISL-EPLFNYSRLKI 159
LS NN +P L PL R+ +
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 429 QILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
+ L++ +N+I F H ++ + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 547
+ LS+L L L +N +E S P L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV------------------PSLRRLDL 138
Query: 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607
E ++ E + S +G + N N+ I L L L+LS
Sbjct: 139 GEL--------KRLE-YISEAAFEGLV---NLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 667
N+L P LT ++ L L H + + F +LK +E L+LS+N L +PH L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 676
P + L R++ L LS N L P +F L + L L + ++ + +LK+LE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 677 SVAYNNL 683
++++NNL
Sbjct: 232 NLSHNNL 238
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 62/155 (40%), Gaps = 35/155 (22%)
Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
T+L TL L N+ LA LP+ L QLD LY+ N +
Sbjct: 83 TELGTLGLANNQLA---SLPLGVFDHLTQLD-------------------KLYLGGNQLK 120
Query: 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 351
+L + F + L+ L L+ N L IP NLQ L+LS N LQ
Sbjct: 121 SLPSGV---FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 386
L LQ + L GN+F CS E LYL+
Sbjct: 177 RLGKLQTITLFGNQF---------DCSRCETLYLS 202
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 80 LVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 139 NNYFQ 143
N Q
Sbjct: 164 TNQLQ 168
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 622 LTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 676
LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 677 SVAYN 681
++
Sbjct: 188 GNQFD 192
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 348
S++++ IP+ + LDL + L + + G L +L L N LQ
Sbjct: 25 SLDSVPSGIPAD------TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 349 RNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 408
+LT L L L N+ + L+ LYL N L LT+L+ +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR 467
+ N L+ F +L +LQ L +S N + F L ++ + L N
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ------- 190
Query: 468 GTFFNCSSLVTLDLS 482
F+CS TL LS
Sbjct: 191 ---FDCSRCETLYLS 202
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 400 NLTRLQYIIMPNNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHL 456
+LT L + + NN L P+ V F L L L + N + SLPS F L+ +K++ L
Sbjct: 81 DLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 457 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 511
+ N L + G F ++L TL LS N+L S+P D L +L + L N +
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 278 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 337
D + +L FN + ++G + L L+L +N +T P + L L
Sbjct: 47 DGIATLSAFNTGVTTIEG-----IQYLNNLIGLELKDNQITDLTPLK---NLTKITELEL 98
Query: 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
S N L+ S L +++ L L + P L+ S+L+ LYL+ N + P
Sbjct: 99 SGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-- 152
Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457
L LT LQY+ + NN + P L L L DN IS P P ++ +VHL
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLASLP-NLIEVHLK 209
Query: 458 KNML 461
N +
Sbjct: 210 DNQI 213
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 24/110 (21%)
Query: 77 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT-----GSISS-------- 123
L +L + EL ++ N L+ +A + S++ LD++S Q+T +S+
Sbjct: 87 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 144
Query: 124 ------SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 167
SPL LT+++ L + NN L PL N S+L A++N+I
Sbjct: 145 NQITNISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 130/298 (43%), Gaps = 51/298 (17%)
Query: 257 RLRQLDVSNNNIRGHIP--VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 314
+L++LD++ +++G +P +K ++L L + S+N D S N L L
Sbjct: 276 QLQELDLTATHLKG-LPSGMKGLNLLKKLVL---SVNHFDQLCQISAANFPSLTHL---- 327
Query: 315 NHLTGEIPE-HLAVGCV----NLQFLALSNNNLQGHLFS--RNFNLTNLQWLQLEGNRFV 367
++ G + + HL VGC+ NLQ L LS+N+++ + NL++LQ L L N +
Sbjct: 328 -YIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 368 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQ-------YIIMPNNHLEGPIP 419
G Q+ +C LE L L L P+ NL LQ ++ N HL +P
Sbjct: 387 GLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 420 VE--------------------FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459
V + SL++L +S + FH L K H+ +
Sbjct: 447 VLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLG-KMSHV--D 503
Query: 460 MLHGQLKRGTFFNCSSL--VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 515
+ H L + + S L + L+L+ N +N P + LSQ S + L HN L+ S
Sbjct: 504 LSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCS 561
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 601 LSGLDLSCNKLIGH--IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
L LDLS N + Q+ NL+ +QTLNLSHN G F +E LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 659 LNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 710
L+ P + L L+V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTR-IQTLNLSHNNLTGSIPSTFSNL-KHVESLD 653
K +S L LD+S N L H + I LNLS N LTGS+ F L V+ LD
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLD 456
Query: 654 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689
L NN++ IP + L+ L+ +VA N L +P+
Sbjct: 457 LHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 281 PSLYVF-NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN-LQFLALS 338
PS + F N + N S+ +K LQ L L N L L ++ L+ L +S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 339 NNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 397
N+L H + R ++ L L N G + + L ++ L L+NN ++ IP+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKD 468
Query: 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 443
+ +L LQ + + +N L+ F +L SLQ + + DN + P
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 28 FTRIALNTSFIALN--------TSFLQIISESMPXXXXXXXXXXTLGTNSSGTLDQGLCS 79
F++ AL + F +N T F+ ++ P + T+S + QG +
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS---VFQGCST 375
Query: 80 LVHLQELYIASNDLRG--SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 137
L LQ L + N L+ + NM+SL LDVS N L SI L L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 138 SNNYFQIPI--SLEPLFNYSRLKIFNAENNEI 167
S+N + L P ++K+ + NN I
Sbjct: 436 SSNMLTGSVFRCLPP-----KVKVLDLHNNRI 462
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 140 NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 199
N +P L P R K + N I S ++ +L L LS N F
Sbjct: 42 NLTHVPKDLPP-----RTKALSLSQNSISELRMPDISFLS---ELRVLRLSHNRIRSLDF 93
Query: 200 PKFLYHQHDLEYVDLSHIKM 219
FL++Q DLEY+D+SH ++
Sbjct: 94 HVFLFNQ-DLEYLDVSHNRL 112
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 210 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL---DVSNN 266
E D SH+K+ + P+ L N T L L ++ L RLP + R QL DV N
Sbjct: 17 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLR---RLPAANFTRYSQLTSLDVGFN 69
Query: 267 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 326
I P ++ LP L V N N L +F L L L +N + +I +
Sbjct: 70 TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPF 127
Query: 327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLY 384
V NL L LS+N L L NLQ L L N+ + L SSL+ L
Sbjct: 128 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 187
Query: 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444
L++N + P + RL + + N L + + C L++ + S N+S
Sbjct: 188 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELANTSIRNLS----- 238
Query: 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 504
LS Q+ + N LK ++L LDLSYN LN D L QL +
Sbjct: 239 ----LSNSQLSTTSNTTFLGLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 288
Query: 505 LGHNNLE 511
L +NN++
Sbjct: 289 LEYNNIQ 295
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 683 LS 684
LS
Sbjct: 95 LS 96
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
S L+ LD+ N + P L ++ LNL HN L+ TF+ ++ L L +N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 659 LNGKIPHQLVELKTLEVFSVAYNNLSG 685
+ + V+ K L +++N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN---- 355
SF +K L+ L++ +N + G I ++ G +NL++L+LSN+ F+ LTN
Sbjct: 334 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 386
Query: 356 ------LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS----LLGKIPRWLGNLTRL- 404
L L L N+ + S LE L L N L G+ R L N+ +
Sbjct: 387 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 446
Query: 405 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460
+Y+ + N +P L L + ++ N+ S PS F PL
Sbjct: 447 LSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLR---------- 490
Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 491 --------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 681 NNL 683
NN+
Sbjct: 292 NNI 294
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 210 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL---DVSNN 266
E D SH+K+ + P+ L N T L L ++ L RLP + R QL DV N
Sbjct: 12 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLR---RLPAANFTRYSQLTSLDVGFN 64
Query: 267 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 326
I P ++ LP L V N N L +F L L L +N + +I +
Sbjct: 65 TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPF 122
Query: 327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLY 384
V NL L LS+N L L NLQ L L N+ + L SSL+ L
Sbjct: 123 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 182
Query: 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444
L++N + P + RL + + N L + + C L++ + S N+S
Sbjct: 183 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELANTSIRNLS----- 233
Query: 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 504
LS Q+ + N LK ++L LDLSYN LN D L QL +
Sbjct: 234 ----LSNSQLSTTSNTTFLGLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 283
Query: 505 LGHNNLE 511
L +NN++
Sbjct: 284 LEYNNIQ 290
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 683 LS 684
LS
Sbjct: 90 LS 91
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
S L+ LD+ N + P L ++ LNL HN L+ TF+ ++ L L +N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 659 LNGKIPHQLVELKTLEVFSVAYNNLSG 685
+ + V+ K L +++N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN---- 355
SF +K L+ L++ +N + G I ++ G +NL++L+LSN+ F+ LTN
Sbjct: 329 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 381
Query: 356 ------LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS----LLGKIPRWLGNLTRL- 404
L L L N+ + S LE L L N L G+ R L N+ +
Sbjct: 382 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 441
Query: 405 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460
+Y+ + N +P L L + ++ N+ S PS F PL
Sbjct: 442 LSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLR---------- 485
Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 486 --------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 681 NNL 683
NN+
Sbjct: 287 NNI 289
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650
+ ++G S + DLS +K+ + + T ++ L L+ N + + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 651 SLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 685
L+LS N L G I ++ E L LEV ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 258 LRQLDVSNNNIRGHIPVKIGD----VLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILDL 312
L QL ++ N I KI D L L N S N L GSI S F N+ L++LDL
Sbjct: 301 LEQLTLAQNEIN-----KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354
Query: 313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRFVGE 369
S NH+ + + +G NL+ LAL N L+ +F R LT+LQ + L N +
Sbjct: 355 SYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCS 410
Query: 370 IPQ 372
P+
Sbjct: 411 CPR 413
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 17/208 (8%)
Query: 307 LQILDLSNNHLTGEIPEHL--AVGCVNLQFLALSNNNLQGHLFSR-------NFNLTNLQ 357
+ LDLS N + + A+ +Q L LSN+ G F NF L+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 358 W-----LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412
L ++ + S + LE L L N + LT L + + N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 413 HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFF 471
L F LD L++LD+S N+I F L ++K++ L N L + G F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392
Query: 472 NCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499
+SL + L N + S P +D LS+
Sbjct: 393 RLTSLQKIWLHTNPWDCSCPR-IDYLSR 419
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 422 FCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480
F L+ L ++ N I+ + F L+ + +++LS+N L G + F N L LD
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353
Query: 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511
LSYN + GL L L L N L+
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 622 LTRIQTLNLSHNNLTGSIPST-FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
LT + LNLS N L GSI S F NL +E LDLS N + + L L+ ++
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 681 NNLSGEIPE 689
N L +P+
Sbjct: 381 NQLK-SVPD 388
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 274 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 333
+K+ P L + NN+ L I +FLQ+ + N G NL+
Sbjct: 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN------------GLANLE 106
Query: 334 FLALSNNNLQGHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSL 374
L L+ NL G + S NF LT+L+ L L N P S
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 210 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL---DVSNN 266
E D SH+K+ + P+ L N T L L ++ L RLP + R QL DV N
Sbjct: 7 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLR---RLPAANFTRYSQLTSLDVGFN 59
Query: 267 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 326
I P ++ LP L V N N L +F L L L +N + +I +
Sbjct: 60 TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPF 117
Query: 327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLY 384
V NL L LS+N L L NLQ L L N+ + L SSL+ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444
L++N + P + RL + + N L + + C L++ + S N+S
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELANTSIRNLS----- 228
Query: 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 504
LS Q+ + N LK ++L LDLSYN LN D L QL +
Sbjct: 229 ----LSNSQLSTTSNTTFLGLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 505 LGHNNLE 511
L +NN++
Sbjct: 279 LEYNNIQ 285
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 683 LS 684
LS
Sbjct: 85 LS 86
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658
S L+ LD+ N + P L ++ LNL HN L+ TF+ ++ L L +N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 659 LNGKIPHQLVELKTLEVFSVAYNNLSG 685
+ + V+ K L +++N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN---- 355
SF +K L+ L++ +N + G I ++ G +NL++L+LSN+ F+ LTN
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 376
Query: 356 ------LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS----LLGKIPRWLGNLTRL- 404
L L L N+ + S LE L L N L G+ R L N+ +
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436
Query: 405 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460
+Y+ + N +P L L + ++ N+ S PS F PL
Sbjct: 437 LSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLR---------- 480
Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 481 --------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 681 NNL 683
NN+
Sbjct: 282 NNI 284
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 62/155 (40%), Gaps = 35/155 (22%)
Query: 232 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291
T+L TL L N+ LA LP+ L QLD LY+ N +
Sbjct: 83 TELGTLGLANNQLA---SLPLGVFDHLTQLD-------------------KLYLGGNQLK 120
Query: 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 351
+L + F + L+ L L+ N L IP NLQ L+LS N LQ
Sbjct: 121 SLPSGV---FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 386
L LQ + L GN+F CS E LYL+
Sbjct: 177 RLGKLQTITLFGNQF---------DCSRCEILYLS 202
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 80 LVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 139 NNYFQ 143
N Q
Sbjct: 164 TNQLQ 168
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 622 LTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 676
LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 677 SVAYNNLSGEI 687
++ EI
Sbjct: 188 GNQFDCSRCEI 198
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 400 NLTRLQYIIMPNNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHL 456
+LT L + + NN L P+ V F L L L + N + SLPS F L+ +K++ L
Sbjct: 81 DLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 457 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 511
+ N L + G F ++L TL LS N+L S+P D L +L + L N +
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Query: 288 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF 347
S++++ IP+ + LDL + L + + G L +L L N LQ
Sbjct: 24 KSLDSVPSGIPAD------TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 348 SRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI 407
+LT L L L N+ + L+ LYL N L LT+L+ +
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 443
+ N L+ F +L +LQ L +S N + S+P
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 667
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 29/219 (13%)
Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----------GSIP 298
+ P K L++L ++N +G D LPSL + S N L G+I
Sbjct: 342 QFPTLKLKSLKRLTFTSN--KGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398
Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ-------FLALSN-------NNLQG 344
+ ++ F ++ +S+N L E EHL NL+ FL+L N +
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 345 HLFSRNFN-LTNLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
F+ FN L++L+ L++ GN F +P ++ +L L L+ L P +L+
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518
Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 441
LQ + M +N+ + L+SLQ+LD S N+I S
Sbjct: 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-LRQLDVSN 265
+L Y+D+SH F N + + LE L + +S F I + R L LD+S
Sbjct: 445 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 266 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
+ P L SL V N S N + + LQ+LD S NH+ + L
Sbjct: 504 CQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360
+L FL L+ N+ ++F LQW++
Sbjct: 563 QHFPSSLAFLNLTQNDFACTCEHQSF----LQWIK 593
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 323 EHLA-VGCVNLQFLALSNNNLQGHLFSRN--------FNLTNLQWLQLEGN--RFVGEIP 371
+HL V C QF L +L+ F+ N +L +L++L L N F G
Sbjct: 331 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 390
Query: 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQI 430
QS SL+ L L+ N ++ +LG L +L+++ +++L+ F L +L
Sbjct: 391 QSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 431 LDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489
LDIS + + F+ LS ++ + ++ N F +L LDLS +L
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 490 IPDWVDGLSQLSHLILGHNNL 510
P + LS L L + HNN
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 622 LTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 681 NNL 683
NN
Sbjct: 528 NNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 667
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-LRQLDVSN 265
+L Y+D+SH F N + + LE L + +S F I + R L LD+S
Sbjct: 421 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 266 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
+ P L SL V N S N + + LQ+LD S NH+ + L
Sbjct: 480 CQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360
+L FL L+ N+ ++F LQW++
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSF----LQWIK 569
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----------GSIP 298
+ P K L++L ++N +G D LPSL + S N L G+
Sbjct: 318 QFPTLKLKSLKRLTFTSN--KGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ-------FLALSN-------NNLQG 344
+ ++ F ++ +S+N L E EHL NL+ FL+L N +
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 345 HLFSRNFN-LTNLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 402
F+ FN L++L+ L++ GN F +P ++ +L L L+ L P +L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 403 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 441
LQ + M +N+ + L+SLQ+LD S N+I S
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 14/200 (7%)
Query: 323 EHLA-VGCVNLQFLALSNNNLQGHLFSRN--------FNLTNLQWLQLEGN--RFVGEIP 371
+HL V C QF L +L+ F+ N +L +L++L L N F G
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQI 430
QS +SL+ L L+ N ++ +LG L +L+++ +++L+ F L +L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 431 LDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489
LDIS + + F+ LS ++ + ++ N F +L LDLS +L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 490 IPDWVDGLSQLSHLILGHNN 509
P + LS L L + HNN
Sbjct: 486 SPTAFNSLSSLQVLNMSHNN 505
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 622 LTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 681 NN 682
NN
Sbjct: 504 NN 505
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 667
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 203/475 (42%), Gaps = 55/475 (11%)
Query: 74 DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
D SL HL L + N ++ + ++SL+ L L S+ + P+ HL +++
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLK 127
Query: 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA----EITESHSL------------ 177
EL +++N Q E N + L+ + +N+I++ ++ H +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 178 ----IAP----KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL-L 228
I P + +L+ L+L +N+ + + LE H + GEF N L
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV----HRLVLGEFRNEGNL 243
Query: 229 ENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN--NNIRGH--IPVKIGDVLPSLY 284
E K L N ++ FRL + +D+ N N+ + V I V Y
Sbjct: 244 EKFDKSALEGLCNLTIE-EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 285 VFN----NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 340
F +N G P+ +K L+ L ++N E V +L+FL LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRN 357
Query: 341 NL--QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL--LGKIPR 396
L +G +F T+L++L L N + + + LE L +++L + +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 397 WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS-LPSCFHPL-SIKQV 454
+L +L L Y+ + + H F L SL++L ++ N+ + LP F L ++ +
Sbjct: 417 FL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 508
LS+ L QL F + SSL L+++ N+L S+PD + D L+ L + L N
Sbjct: 476 DLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG 661
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 233 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 292
KL+ L++ + L +P + L +L + +N IR +P + L ++ N
Sbjct: 103 KLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158
Query: 293 LD--GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN 350
L+ G P +F +K L L +S LTG IP+ L L L L +N +Q
Sbjct: 159 LENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDL 213
Query: 351 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410
+ L L L N+ SLS +L L+L+NN L ++P L +L LQ + +
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLH 272
Query: 411 NNHLEGPIPVEFC 423
N++ +FC
Sbjct: 273 TNNITKVGVNDFC 285
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 27/101 (26%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
+++ L L HN + + S L + L L NNKL+ ++P L +LK L+V + NN
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 683 LS--------------------------GEIPEWKAQFATF 697
++ +P W+ Q ATF
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 619 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 659
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 7/155 (4%)
Query: 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-LRQLDVSN 265
+L Y+D+SH F N + + LE L + +S F I + R L LD+S
Sbjct: 126 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 266 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 325
+ P + L SL V N S N + + LQ+LD S NH+ + L
Sbjct: 185 CQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 326 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360
+L FL L+ N+ ++F LQW++
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQSF----LQWIK 274
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----------GSIPSSFGNMKFLQI 309
+L++ +N ++ +P + D L L + S N L G+ + ++ F +
Sbjct: 32 RLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 310 LDLSNNHLTGEIPEHLAVGCVNLQ-------FLALSN-------NNLQGHLFSRNFN-LT 354
+ +S+N L E EHL NL+ FL+L N + F+ FN L+
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 355 NLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 413
+L+ L++ GN F +P ++ +L L L+ L P +L+ LQ + M +N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 414 LEGPIPVEFCQLDSLQILDISDNNISGS 441
+ L+SLQ+LD S N+I S
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
Query: 335 LALSNNNLQGHLFSRNFNLTNLQWLQLEGN--RFVGEIPQSLSKCSSLEGLYLNNNSLLG 392
L L +N LQ LT L L L N F G QS +SL+ L L+ N ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 393 KIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLS- 450
+LG L +L+++ +++L+ F L +L LDIS + + F+ LS
Sbjct: 93 MSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 509
++ + ++ N F +L LDLS +L P + LS L L + HNN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 622 LTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 681 NN 682
NN
Sbjct: 209 NN 210
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 615 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 674
+P ++ N + ++LS+N ++ +FSN+ + +L LS N+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 675 VFSVAYNNLSGEIPE 689
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 418
L L+GN+F +P+ LS L + L+NN + + N+T+L +I+ N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 419 PVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450
P F L SL++L + N+IS F+ LS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 418 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477
+P E L ++D+S+N IS L +F N + L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS------------------------TLSNQSFSNMTQLL 81
Query: 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
TL LSYNRL P DGL L L L N++
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
L+ +DLS N++ N+T++ TL LS+N L P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 661 GKIPHQLVELKTLEVFSVAYNNL 683
+L L ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 43/219 (19%)
Query: 297 IPSSFG-NMKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNL 353
+P SF ++K L+ LDLS N + E ++ A +LQ L LS N+L+ + L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 354 T--NLQWLQLEGNRFVGEIPQSLSKCSSLEGL-YLNNNSLLGKIPRWLGNLTRLQYIIMP 410
T NL L + N F +P S C E + +LN +S
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSS--------------------- 419
Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
G V+ C +L++LD+S+NN+ S F P ++++++S+N L L +
Sbjct: 420 ----TGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASL 471
Query: 471 FNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 508
F L+ + +S N+L S+PD + D L+ L + L N
Sbjct: 472 FPV--LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 258 LRQLDVSNNNIR--GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
++ LD+S N I GH ++ L L + ++ +N ++G S G+ L+ LDLS+N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDN 84
Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQ-S 373
HL+ + +L++L L N Q + F NLTNLQ L++ EI +
Sbjct: 85 HLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQ--LDSLQI 430
+ +SL L + SL + L ++ + ++ + HL E +E L S++
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLSESAFLLEIFADILSSVRY 200
Query: 431 LDISDNNISGSLPSCFHPLSIKQV 454
L++ D N++ F PL + +V
Sbjct: 201 LELRDTNLARFQ---FSPLPVDEV 221
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 28/139 (20%)
Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
SIPS G ++ LDLS N +T I C NLQ L L ++ +
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN------------ 63
Query: 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHL 414
+EG+ F SLE L L++N L W G L+ L+Y+ +M N +
Sbjct: 64 ----TIEGDAFYS--------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 415 EGPIPVEFCQLDSLQILDI 433
+ F L +LQ L I
Sbjct: 112 TLGVTSLFPNLTNLQTLRI 130
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680
T IQ L+L++N L + STFS LK ++ LDLS N L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 681 NNLSGEIPE 689
NN+ P
Sbjct: 282 NNIQRLSPR 290
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHGQLKR 467
+ +N L P F + L ILD N+IS P L + K ++L N L Q+
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQISD 90
Query: 468 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
TF C++L LDL N ++ + L L L HN L
Sbjct: 91 QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 608 CNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 666
C+ L + HIP + + I LNL+HN L P+ F+ + LD N ++ P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 667 LVELKTLEVFSVAYNNLS 684
L L+V ++ +N LS
Sbjct: 69 CQILPLLKVLNLQHNELS 86
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 43/219 (19%)
Query: 297 IPSSFG-NMKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNL 353
+P SF ++K L+ LDLS N + E ++ A +LQ L LS N+L+ + L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 354 T--NLQWLQLEGNRFVGEIPQSLSKCSSLEGL-YLNNNSLLGKIPRWLGNLTRLQYIIMP 410
T NL L + N F +P S C E + +LN +S
Sbjct: 411 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSS--------------------- 445
Query: 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 470
G V+ C +L++LD+S+NN+ S F P ++++++S+N L L +
Sbjct: 446 ----TGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASL 497
Query: 471 FNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 508
F L+ + ++ N+L S+PD + D L+ L + L N
Sbjct: 498 FPV--LLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTN 533
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 258 LRQLDVSNNNIR--GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 315
++ LD+S N I GH ++ L L + ++ +N ++G S G+ L+ LDLS+N
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDN 110
Query: 316 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQ-S 373
HL+ + +L++L L N Q + F NLTNLQ L++ EI +
Sbjct: 111 HLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 169
Query: 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQ--LDSLQI 430
+ +SL L + SL + L ++ + ++ + HL E +E L S++
Sbjct: 170 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLSESAFLLEIFADILSSVRY 226
Query: 431 LDISDNNISGSLPSCFHPLSIKQV 454
L++ D N++ F PL + +V
Sbjct: 227 LELRDTNLARFQ---FSPLPVDEV 247
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 28/139 (20%)
Query: 296 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355
SIPS G ++ LDLS N +T I C NLQ L L ++ +
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN------------ 89
Query: 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHL 414
+EG+ F SLE L L++N L W G L+ L+Y+ +M N +
Sbjct: 90 ----TIEGDAFYS--------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 415 EGPIPVEFCQLDSLQILDI 433
+ F L +LQ L I
Sbjct: 138 TLGVTSLFPNLTNLQTLRI 156
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 356
+P S + + +LDLS+N+L+ E NL L LS+N+L + NL
Sbjct: 33 VPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 416
++L L N S +LE L L NN ++ ++ +LQ + + N +
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-S 149
Query: 417 PIPVEFC----QLDSLQILDISDNNI 438
PVE +L L +LD+S N +
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 370 IPQSLSKCSSLEGLYLNNNSLLGKIPRWL-GNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428
+PQSL ++L L NN S L W LT L +++ +NHL F + +L
Sbjct: 33 VPQSLPSYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 429 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
+ LD+S N++ F L +V L N + R F + + L L LS N+++
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 489 SIPDWVDGLSQLSHLIL 505
+ + ++L L+L
Sbjct: 151 FPVELIKDGNKLPKLML 167
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 10/230 (4%)
Query: 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 318
R LD+ N I+ + P L + N + P +F N+ L+ L L +N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 319 GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS 378
IP + G NL L +S N + L +L NL+ L++ N V ++ S +
Sbjct: 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD-NN 437
SLE L L +L L +L L + + + ++ F +L L++L+IS
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 438 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT---LDLSYN 484
+ P+C + L++ + ++ H L + LV L+LSYN
Sbjct: 213 LDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 80 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 139
L+ LQE+ + L P+ + LR+L+VS NQLT ++ S + ++E L+L +
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329
Query: 140 N 140
N
Sbjct: 330 N 330
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 376 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435
+CS+ + L + +P + TRL + + N ++ EF L+ L++++
Sbjct: 8 ECSAQDRAVLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 436 NNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
N +S P F+ L +++ + L N L + G F S+L LD+S N++ +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 495 DGLSQLSHLILGHNNL 510
L L L +G N+L
Sbjct: 125 QDLYNLKSLEVGDNDL 140
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 65 LGTNSSGTLDQG-LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS 123
LG N TL+Q S HL+EL + N + P N+ +LR L + SN+L I
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPL 97
Query: 124 SPLVHLTSIEELMLSNNYFQIPISLEPLF-NYSRLKIFNAENNEIKAEITESHSLIAPKF 182
L+++ +L +S N +I I L+ +F + LK +N++ + SH +
Sbjct: 98 GVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLN 152
Query: 183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG 221
L L+L I + L H H L + L H+ +N
Sbjct: 153 SLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINA 190
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
L L+L+ N + P NL ++TL L N L F+ L ++ LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 661 GKIPHQLVELKTLEVFSVAYNNL 683
+ + +L L+ V N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 620 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679
G L + L L N LTG P+ F H++ L L NK+ + L L+ ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 680 YNNLSGEIP 688
N +S +P
Sbjct: 111 DNQISCVMP 119
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507
PL ++ L+ N L G F LV L+L N+L G P+ +G S + L LG
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 508 NNLE 511
N ++
Sbjct: 88 NKIK 91
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 51 SMPXXXXXXXXXXTLGTNSSGTLDQGLCS-LVHLQELYIASNDLRGSLPWCMAN-MTSLR 108
S+P L TNS +L G+ L L +LY+ N L+ SLP + N +TSL
Sbjct: 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLT 79
Query: 109 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 143
L++S+NQL S+ + LT ++EL L+ N Q
Sbjct: 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 431 LDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 488
LD+ N++ SLP F L S+ Q++L N L L G F +SL L+LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 489 SIPDWV-DGLSQLSHLILGHNNLE 511
S+P+ V D L+QL L L N L+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 406 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHG 463
Y+ + N L+ F +L SL L + N + SLP F+ L S+ ++LS N L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 511
L G F + L L L+ N+L S+PD V D L+QL L L N L+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 618 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVF 676
Q+ NL +Q LNLS+N G F +E LD++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 677 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 710
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 429 QILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
Q L +++N I+ P F H ++++Q++ + N L + G F + L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 488 GSIPDWV-DGLSQLSHLILGHNNLEGE 513
SIP D L L+H+ L +N + E
Sbjct: 95 -SIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 65 LGTNSSGTLDQGLCS-LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS 123
L N L+ G+ LV+LQ+LY SN L +T L LD++ N L SI
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 124 SPLVHLTSIEELMLSNN 140
+L S+ + L NN
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 383 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 442
L+LNNN + P +L LQ + +N L F +L L LD++DN++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 443 PSCFHPL-SIKQVHLSKN 459
F L S+ ++L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
>pdb|3L1W|A Chain A, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|B Chain B, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|C Chain C, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|D Chain D, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|E Chain E, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|F Chain F, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
Length = 257
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 160 FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 219
FNAE+ E E H L+ KFQ ++ +L+++YG F F Y + E ++ +I +
Sbjct: 167 FNAESGE------EVHQLVQKKFQ-DSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYV 219
Query: 220 NGEFPNWLLENNTKLETLFLVNDSLAGPF 248
G W ++ L DS+ G F
Sbjct: 220 KG----WQVQQTASL------TDSIDGRF 238
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 34/237 (14%)
Query: 297 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 356
IPS N ++L +++ + + + HL +L+ L L N+++ L +L
Sbjct: 73 IPS---NTRYLNLMENNIQMIQADTFRHLH----HLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRW----LGNLTRLQ 405
L+L N + S L L+L NN + ++P LG L +L+
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 406 YIIMPNNHLEGPIPVEFCQLD--------------SLQILDISDNNISGSLPSCFHPLSI 451
YI EG +++ L L+ L++S N+ P FH LS
Sbjct: 186 YI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508
+ N ++R F +SLV L+L++N L+ D L L L L HN
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV--------GCVN 331
L +L + N + AL P+S ++ L+ L + E+PE LA G VN
Sbjct: 129 LETLTLARNPLRAL----PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 332 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 391
LQ L L ++ L + NL NL+ L++ N + + ++ LE L L + L
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 392 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 451
P G L+ +I+ + +P++ +L L+ LD+ LPS L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Query: 452 KQVHLSKNMLHGQL 465
+ L L QL
Sbjct: 303 NCIILVPPHLQAQL 316
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 624 RIQTLNLSHNNL-TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
+IQ + + +NNL T + ++ K + L+ N+L GK+P E+K L ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQ 364
Query: 683 LSGEIPEWKAQFATFNE 699
++ EIP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL-KHVESLDLSNNKL 659
L L+ N+L G +P G+ ++ +LNL++N +T IP+ F + VE+L ++NKL
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Query: 660 NGKIPHQLVELKTLEVFSV---AYNNL 683
IP+ + + K++ V S +YN +
Sbjct: 390 K-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 299 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358
+ F NM L+ L L GE+ ++ G ++F L+N +G +++ +T++ W
Sbjct: 85 TEFENMIKLRTKRL--KLLIGEVDAEVSTG-DKIEFPVLANGKRRGFIYNVGGLVTDIAW 141
Query: 359 LQLEGNRFVGEIPQSLS 375
L +E N +G+ Q L+
Sbjct: 142 LNIEENTDIGKDIQYLA 158
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 54/188 (28%)
Query: 334 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI---PQSL---------------- 374
+ ++SN LQG L R+F+ + L ++ V ++ PQS
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 375 ----------SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEF 422
SK S L +NN L + G+LT L+ +I+ N L+ I
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482
Q+ SLQ LDIS N++S K+G SL++L++S
Sbjct: 371 TQMKSLQQLDISQNSVSY-----------------------DEKKGDCSWTKSLLSLNMS 407
Query: 483 YNRLNGSI 490
N L +I
Sbjct: 408 SNILTDTI 415
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678
I +L++++ L +SHN + S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 679 AYNNL 683
A++ L
Sbjct: 101 AFDAL 105
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663
LDL NK I IP Q+ L +Q LN++ N L F L ++ + L N +
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 664 PH 665
P
Sbjct: 485 PR 486
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 77 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 136
L +L + EL ++ N L+ +A + S++ LD++S Q+T +PL L++++ L
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLY 135
Query: 137 LSNN---------------YFQIPIS----LEPLFNYSRLKIFNAENNEI 167
L N Y I + L PL N S+L A++N+I
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 621 NLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL--KTLEVFS 677
NL + L+LS N + + +F L ++S+D S+N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 678 VAYNNLSGEIP-EW 690
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 622 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681
L+ +Q L L+HN L P FS+L + L L++N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 682 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713
L P+ F + + N F+C L
Sbjct: 537 QLLAPNPD---VFVSLSVLDITHNKFICECEL 565
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 682
+ ++ L+LSH + F LK ++ L+L+ NK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 683 LSGEI 687
L GE+
Sbjct: 325 LLGEL 329
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Query: 348 SRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRL 404
SR F L +L+ L L N+ ++ +L+ L L+ N LLG++ + G L ++
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYG-LPKV 340
Query: 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-----SLPSCF----HPLSIKQVH 455
YI + NH+ F L+ LQ LD+ DN ++ S+P F +++ +++
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 456 LSKNMLH 462
L+ N++H
Sbjct: 401 LTANLIH 407
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 80 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT 118
L HLQ LY+ N L P +++T+LR L ++SN+LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL----EGPIPVEFCQLDSLQILDI 433
S L+ LYLN+N L P +LT L+ + + +N L +P +L+ILDI
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDI 533
Query: 434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 472
S N + P F LS+ + +K + +L TF N
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICECEL--STFIN 570
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
L+ LDLS +L L R+Q LN+SHNNL S ++ L + +LD S N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 661 GKIPHQLVELKTLEVF--SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRS 718
L+ F S+A+ NL+ + F + E FL + C +
Sbjct: 530 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 582
Query: 719 PATM 722
P M
Sbjct: 583 PVEM 586
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 103/460 (22%), Positives = 178/460 (38%), Gaps = 46/460 (10%)
Query: 74 DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
D+ L HL L + N ++ P + +TSL L +L S+ S P+ L +++
Sbjct: 68 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLK 126
Query: 134 ELMLSNNYFQIPISLEPLF-NYSRLKIFNAENNEIKAEITESHSLIAPKFQLN-TLSLSS 191
+L +++N+ L F N + L + N I+ + Q+N +L +S
Sbjct: 127 KLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 185
Query: 192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 251
N P + + L + + G F N++ + L N + RL
Sbjct: 186 N-------PIDFIQDQAFQGIKLHELTLRGNF------NSSNIMKTCLQNLAGLHVHRLI 232
Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQIL 310
+ K R L++ I + DV + + + D + N+ + +
Sbjct: 233 LGEFKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 288
Query: 311 DLSNNHLTGEIPEHLA------VGCVNLQF----------LALSNNNLQGHLFSRNFNLT 354
+S +L ++P+H + C QF L L+ N +G + + L
Sbjct: 289 GVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--KGSISFKKVALP 345
Query: 355 NLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412
+L +L L N F G S +SL L L+ N + ++G L LQ++ ++
Sbjct: 346 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHS 404
Query: 413 HLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF 470
L+ F L+ L LDIS N F L S+ + ++ N F
Sbjct: 405 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 464
Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
N ++L LDLS +L D L +L L + HNNL
Sbjct: 465 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 619 IGNLTRIQTLNLSHNNL-TGSIPSTFSNLKHVESLDLSNN 657
IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 685 GEIPE 689
E+P+
Sbjct: 93 TELPK 97
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507
P +I ++ L +N + + G F L +DLS N+++ PD GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 508 NNL 510
N +
Sbjct: 90 NKI 92
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660
L+ LDLS +L L R+Q LN+SHNNL S ++ L + +LD S N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 661 GKIPHQLVELKTLEVF--SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRS 718
L+ F S+A+ NL+ + F + E FL + C +
Sbjct: 535 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 719 PATM 722
P M
Sbjct: 588 PVEM 591
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 103/460 (22%), Positives = 178/460 (38%), Gaps = 46/460 (10%)
Query: 74 DQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133
D+ L HL L + N ++ P + +TSL L +L S+ S P+ L +++
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLK 131
Query: 134 ELMLSNNYFQIPISLEPLF-NYSRLKIFNAENNEIKAEITESHSLIAPKFQLN-TLSLSS 191
+L +++N+ L F N + L + N I+ + Q+N +L +S
Sbjct: 132 KLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLP 251
N P + + L + + G F N++ + L N + RL
Sbjct: 191 N-------PIDFIQDQAFQGIKLHELTLRGNF------NSSNIMKTCLQNLAGLHVHRLI 237
Query: 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQIL 310
+ K R L++ I + DV + + + D + N+ + +
Sbjct: 238 LGEFKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 311 DLSNNHLTGEIPEHLA------VGCVNLQF----------LALSNNNLQGHLFSRNFNLT 354
+S +L ++P+H + C QF L L+ N +G + + L
Sbjct: 294 GVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--KGSISFKKVALP 350
Query: 355 NLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412
+L +L L N F G S +SL L L+ N + ++G L LQ++ ++
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHS 409
Query: 413 HLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF 470
L+ F L+ L LDIS N F L S+ + ++ N F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 510
N ++L LDLS +L D L +L L + HNNL
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 619 IGNLTRIQTLNLSHNNL-TGSIPSTFSNLKHVESLDLSNN 657
IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 78 CSLVHLQ---------ELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
C L LQ L ++ N L+ SLP + +L +LDVS N+LT S+ L
Sbjct: 65 CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 129 LTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
L ++EL L N + P L P +L + N + E+ A L+ L+T
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA------GLLNGLENLDT 176
Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYV 212
L L N + PK + H L +
Sbjct: 177 LLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQELY+ N+L+ P + L L +++NQLT + + L L +++ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 136 ML-SNNYFQIP 145
+L N+ + IP
Sbjct: 178 LLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 78 CSLVHLQ---------ELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
C L LQ L ++ N L+ SLP + +L +LDVS N+LT S+ L
Sbjct: 65 CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 129 LTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
L ++EL L N + P L P +L + N + E+ A L+ L+T
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA------GLLNGLENLDT 176
Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYV 212
L L N + PK + H L +
Sbjct: 177 LLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQELY+ N+L+ P + L L +++NQLT + + L L +++ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 136 ML-SNNYFQIP 145
+L N+ + IP
Sbjct: 178 LLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N + E+ A + L+TL L N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE------NLDTLLLQEN--SL 184
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 185 YTIPKGFFGSHLLPFA 200
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQELY+ N+L+ P + L L +++NQLT + + L L +++ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 136 ML-SNNYFQIP 145
+L N+ + IP
Sbjct: 178 LLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 78 CSLVHLQ---------ELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 128
C L LQ L ++ N L+ SLP + +L +LDVS N+LT S+ L
Sbjct: 65 CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 129 LTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 186
L ++EL L N + P L P +L + N + E+ A L+ L+T
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPA------GLLNGLENLDT 176
Query: 187 LSLSSNYGDGFIFPKFLYHQHDLEYV 212
L L N + PK + H L +
Sbjct: 177 LLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 625 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 685 GEIPE 689
E+P+
Sbjct: 93 TELPK 97
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507
P +I ++ L +N + + G F L +DLS N+++ PD GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 508 NNL 510
N +
Sbjct: 90 NKI 92
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N + E+ A + L+TL L N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE------NLDTLLLQEN--SL 184
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 185 YTIPKGFFGSHLLPFA 200
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 76 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135
L L LQELY+ N+L+ P + L L +++NQLT + + L L +++ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 136 ML-SNNYFQIP 145
+L N+ + IP
Sbjct: 178 LLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 709
+NN+L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 404 LQYIIMPNNHLEGPIPVEFCQLDS---LQILDISDNNI--SGSLPSCFHPLSIKQVHLSK 458
LQ + + N +E P V + LQ LD+S N++ + PSC P + ++LS
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262
Query: 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487
L Q+ +G + L LDLSYNRL+
Sbjct: 263 TGLK-QVPKGLP---AKLSVLDLSYNRLD 287
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 272 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 331
+P I LY+++N + L+ P F + L LDL NN LT +P +
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 87
Query: 332 LQFLALSNNNLQ 343
L L+L++N L+
Sbjct: 88 LTQLSLNDNQLK 99
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 602 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
SG + C+ K + +P I T Q L L N +T P F L + LDL NN+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 585 TTKNIAYIYQGKV----------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 634
TT + Y+Y ++ L+ L+ LDL N+L LT++ L+L+ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 635 LTGSIPSTFSNLKHVESLDLSNN 657
L F NLK + + L NN
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 427 SLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 485
+ Q+L + DN I+ P F L+ + ++ L N L L G F + L L L+ N+
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 486 LNGSIPDWV-DGLSQLSHLILGHN 508
L SIP D L L+H+ L +N
Sbjct: 98 LK-SIPRGAFDNLKSLTHIWLLNN 120
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 491
D+ D +IS ++ +S++ ++L K+ + TF S L LDL+ L +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELP 294
Query: 492 DWVDGLSQLSHLILGHNNLE 511
+ GLS L L+L N E
Sbjct: 295 SGLVGLSTLKKLVLSANKFE 314
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 91/228 (39%), Gaps = 36/228 (15%)
Query: 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343
Y FN S N +F LQ LDL+ HL+ E+P L VG L+ L LS N +
Sbjct: 265 YFFNISSN--------TFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFE 314
Query: 344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLLGK--IPRWLGN 400
N +L L ++GN E+ L +L L L+++ + L N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Query: 401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460
L+ LQ + + N F + L++LD++ F L +K
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA-----------FTRLKVKDA------ 417
Query: 461 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508
+ F N L L+LS++ L+ S DGL L HL L N
Sbjct: 418 ------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 310
PI + L L ++ N I P+ L SL+ F +N + P N L L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITDITP--VANXTRLNSL 226
Query: 311 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 370
+ NN +T P L +L + N + + +LT L+ L + N+ + +I
Sbjct: 227 KIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQ-ISDI 280
Query: 371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420
L+ S L L+LNNN L + +G LT L + + NH+ P+
Sbjct: 281 -SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 273 PVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI--PEHLAVGCV 330
PVK G P + S++ LDGS+P +G L LS+ TG P+ LA G +
Sbjct: 49 PVKQGSDRPLWFASKQSLSYLDGSLPGDYG----FDPLGLSDPEGTGGFIEPKWLAYGEI 104
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
+D S ++ +P I LY+++N + L+ P F + L LDL NN LT
Sbjct: 14 VDCSGKSL-ASVPTGIPTTTQVLYLYDNRITKLE---PGVFDRLTQLTRLDLDNNQLT-V 68
Query: 321 IPEHLAVGCVNLQFLALSNNNLQ 343
+P + L L+L++N L+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK 91
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 602 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
SG + C+ K + +P G T Q L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N E+ A L+ L+TL L N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNGLENLDTLLLQEN--SL 184
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 185 YTIPKGFFGSHLLPFA 200
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 76 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 133
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N E+ A + L+TL L N
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE------NLDTLLLQEN--SL 185
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 186 YTIPKGFFGSHLLPFA 201
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 97 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN L ++P L+ L+ L+ + N+L
Sbjct: 157 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N E+ A L+ L+TL L N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNGLENLDTLLLQEN--SL 184
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 185 YTIPKGFFGSHLLPFA 200
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N E+ A L+ L+TL L N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNGLENLDTLLLQEN--SL 184
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 185 YTIPKGFFGSHLLPFA 200
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 79 SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 138
+L L L ++ N L+ SLP + +L +LDVS N+LT S+ L L ++EL L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK 132
Query: 139 NNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG 196
N + P L P +L + N E+ A L+ L+TL L N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNGLENLDTLLLQEN--SL 184
Query: 197 FIFPKFLYHQHDLEYV 212
+ PK + H L +
Sbjct: 185 YTIPKGFFGSHLLPFA 200
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 302 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 655 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 683
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320
+D S ++ +P I LY+++N + L+ P F + L LDL NN LT
Sbjct: 14 VDCSGKSL-ASVPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-V 68
Query: 321 IPEHLAVGCVNLQFLALSNNNLQ 343
+P + L L+L++N L+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK 91
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 602 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659
SG + C+ K + +P G T Q L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 83 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 142
L+EL+I+ N + SL + + +LR+L +S+N++T L L +E+L+L+ N
Sbjct: 95 LEELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-- 150
Query: 143 QIPISLEPLFN 153
PL+N
Sbjct: 151 -------PLYN 154
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-SKCS 378
EIP L + L+F+ +Q FS +L+ +++ N + I + S
Sbjct: 23 EIPSDLPRNAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 379 SLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ--ILDISD 435
L + + N+LL P NL LQY+++ N ++ V ++ SLQ +LDI D
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH--KIHSLQKVLLDIQD 137
Query: 436 N-NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484
N NI + F LS + V L N Q + FN + L L+LS N
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 83 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 142
L+EL+I+ N + SL + + +LR+L +S+N++T L L +E+L+L+ N
Sbjct: 96 LEELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-- 151
Query: 143 QIPISLEPLFN 153
PL+N
Sbjct: 152 -------PLYN 155
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 274 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 333
+K+ P L + NN+ L I +FLQ+ + N G NL+
Sbjct: 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN------------GLANLE 106
Query: 334 FLALSNNNLQGHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSL 374
L L+ NL G + S NF LT+L+ L L N P S
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
Query: 320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-SKCS 378
EIP L + L+F+ +Q FS +L+ +++ N + I + S
Sbjct: 23 EIPSDLPRNAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 379 SLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ--ILDISD 435
L + + N+LL P NL LQY+++ N ++ +P + ++ SLQ +LDI D
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LP-DVHKIHSLQKVLLDIQD 137
Query: 436 N-NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494
N NI + F LS + V L N Q FN + L L+LS N +P+ V
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,442,013
Number of Sequences: 62578
Number of extensions: 920891
Number of successful extensions: 3071
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1838
Number of HSP's gapped (non-prelim): 728
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)