Query 004005
Match_columns 779
No_of_seqs 507 out of 4956
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 15:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.8E-59 8.3E-64 557.8 44.3 542 81-712 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-55 2.8E-60 527.4 42.1 547 40-685 60-608 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.7E-42 1E-46 344.2 8.3 414 234-735 80-496 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.6E-41 2.1E-45 334.8 3.2 373 260-713 82-457 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.9E-39 1.1E-43 308.8 -16.4 389 202-684 132-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 6.1E-39 1.3E-43 308.1 -16.5 488 53-660 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 9.7E-35 2.1E-39 307.7 -6.3 406 73-535 13-420 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.8E-33 8.2E-38 295.7 -6.0 486 21-657 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.8E-31 3.8E-36 270.2 -5.0 365 184-660 9-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.2E-31 7E-36 268.3 -4.5 364 255-683 6-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.4E-27 3.1E-32 229.9 -4.2 394 255-657 66-498 (498)
12 KOG4237 Extracellular matrix p 99.9 4.8E-26 1.1E-30 219.4 -4.8 300 320-688 60-363 (498)
13 PLN03210 Resistant to P. syrin 99.9 9.1E-22 2E-26 235.5 26.7 58 600-658 847-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 234.0 27.3 336 278-682 555-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 3.8E-24 199.3 17.3 113 308-440 204-316 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4E-19 8.6E-24 196.6 17.5 265 330-691 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 5.7E-17 1.2E-21 181.0 13.6 246 331-684 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 3.1E-17 6.8E-22 183.1 11.5 202 282-535 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-18 5.3E-23 179.5 1.1 243 51-318 21-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-18 4.9E-23 179.7 -2.4 281 334-683 2-319 (319)
21 KOG0617 Ras suppressor protein 99.6 1.4E-17 3E-22 142.5 -5.0 183 445-687 29-215 (264)
22 KOG0617 Ras suppressor protein 99.5 7.8E-16 1.7E-20 131.9 -5.0 156 350-511 29-186 (264)
23 PLN03150 hypothetical protein; 99.4 2.4E-13 5.1E-18 152.0 10.7 118 600-717 419-538 (623)
24 KOG1909 Ran GTPase-activating 99.2 8.8E-13 1.9E-17 127.0 -2.3 243 51-317 28-310 (382)
25 PLN03150 hypothetical protein; 99.2 7.1E-11 1.5E-15 132.2 11.8 114 523-689 419-533 (623)
26 KOG3207 Beta-tubulin folding c 99.2 3.7E-12 8.1E-17 126.1 -0.9 208 57-317 97-313 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 2.7E-12 5.8E-17 131.1 -6.2 174 452-689 78-251 (722)
28 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 3.9E-16 121.3 -0.7 161 230-390 119-283 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.6E-15 105.9 4.3 106 53-168 19-126 (175)
30 KOG1259 Nischarin, modulator o 99.0 4.5E-11 9.9E-16 112.4 0.6 84 600-686 330-414 (490)
31 KOG0532 Leucine-rich repeat (L 99.0 1E-11 2.2E-16 126.9 -4.1 196 424-682 73-271 (722)
32 COG4886 Leucine-rich repeat (L 99.0 3.7E-10 8.1E-15 121.2 6.9 199 405-688 96-294 (394)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.5E-15 103.7 3.9 132 14-164 14-149 (175)
34 COG4886 Leucine-rich repeat (L 99.0 1.1E-09 2.4E-14 117.6 7.6 102 334-439 97-199 (394)
35 KOG1909 Ran GTPase-activating 98.9 5.9E-11 1.3E-15 114.6 -2.1 243 14-293 25-310 (382)
36 KOG1259 Nischarin, modulator o 98.9 2.3E-10 4.9E-15 107.7 1.0 130 473-661 283-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.8E-14 124.5 4.2 85 51-141 569-653 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 80.7 3.2 60 600-659 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 2.9E-14 81.1 2.8 61 623-683 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 4.1E-10 8.9E-15 120.7 -1.6 86 601-689 234-323 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 2.5E-09 5.4E-14 122.3 3.0 92 10-116 562-653 (889)
42 KOG0531 Protein phosphatase 1, 98.6 2.9E-09 6.3E-14 114.2 -1.8 197 398-684 91-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 6E-10 1.3E-14 105.0 -6.4 89 82-171 186-276 (419)
44 KOG2120 SCF ubiquitin ligase, 98.6 5.2E-10 1.1E-14 105.4 -8.7 186 53-267 185-374 (419)
45 KOG4341 F-box protein containi 98.5 3E-09 6.5E-14 105.3 -4.5 210 54-267 139-357 (483)
46 KOG4341 F-box protein containi 98.5 7.4E-09 1.6E-13 102.6 -4.5 289 19-341 138-437 (483)
47 KOG2982 Uncharacterized conser 98.4 7.2E-08 1.6E-12 91.2 0.1 209 303-512 43-263 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.4 5.6E-08 1.2E-12 90.7 -0.7 222 46-293 24-284 (388)
49 KOG2982 Uncharacterized conser 98.4 8.3E-08 1.8E-12 90.8 0.2 109 53-166 45-157 (418)
50 KOG1859 Leucine-rich repeat pr 98.3 2.2E-08 4.8E-13 105.8 -6.6 125 331-461 165-291 (1096)
51 KOG1859 Leucine-rich repeat pr 98.2 1.4E-08 3E-13 107.3 -8.7 181 249-439 102-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.2 2.7E-07 5.8E-12 86.3 -1.1 90 255-344 184-286 (388)
53 KOG4579 Leucine-rich repeat (L 98.0 1.7E-07 3.8E-12 78.2 -4.2 88 600-690 78-165 (177)
54 KOG3665 ZYG-1-like serine/thre 98.0 2.1E-06 4.7E-11 96.0 1.6 160 53-240 122-283 (699)
55 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.5E-10 71.5 6.2 111 51-169 40-154 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 54.3 3.9 36 82-118 2-37 (44)
57 KOG1644 U2-associated snRNP A' 97.7 6.2E-05 1.3E-09 67.9 5.9 131 55-219 21-152 (233)
58 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 8.1E-10 52.0 3.4 38 53-95 1-38 (44)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00011 2.3E-09 64.8 6.4 122 300-428 7-128 (129)
60 KOG4579 Leucine-rich repeat (L 97.6 5.3E-06 1.1E-10 69.5 -2.6 107 600-711 54-162 (177)
61 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 73.9 7.8 53 449-508 52-104 (426)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00019 4.1E-09 63.2 6.5 123 275-404 6-128 (129)
63 KOG3665 ZYG-1-like serine/thre 97.5 5E-05 1.1E-09 85.2 2.4 58 206-265 147-204 (699)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.4E-09 68.4 1.6 84 51-142 41-128 (260)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00013 2.8E-09 69.0 0.8 90 77-169 39-130 (260)
66 PRK15386 type III secretion pr 97.1 0.003 6.5E-08 65.4 10.1 136 230-388 50-187 (426)
67 KOG1947 Leucine rich repeat pr 97.0 0.00011 2.3E-09 81.7 -1.3 193 51-258 186-389 (482)
68 KOG2123 Uncharacterized conser 96.8 7.1E-05 1.5E-09 70.8 -4.2 100 18-135 18-122 (388)
69 KOG1947 Leucine rich repeat pr 96.8 0.00012 2.6E-09 81.3 -3.7 35 476-510 403-439 (482)
70 KOG2123 Uncharacterized conser 96.1 0.00018 4E-09 68.1 -6.0 83 52-143 18-101 (388)
71 KOG4308 LRR-containing protein 94.5 0.00034 7.4E-09 75.1 -11.3 113 55-168 89-217 (478)
72 KOG4308 LRR-containing protein 94.1 0.00029 6.3E-09 75.7 -12.8 194 82-295 88-304 (478)
73 PF00560 LRR_1: Leucine Rich R 93.9 0.021 4.6E-07 31.9 0.5 9 603-611 4-12 (22)
74 TIGR00864 PCC polycystin catio 92.7 0.083 1.8E-06 66.7 3.3 77 653-734 1-77 (2740)
75 KOG0473 Leucine-rich repeat pr 92.3 0.0049 1.1E-07 57.1 -5.7 88 47-143 37-124 (326)
76 PF13504 LRR_7: Leucine rich r 91.9 0.11 2.3E-06 26.9 1.4 12 106-117 2-13 (17)
77 KOG0473 Leucine-rich repeat pr 91.6 0.006 1.3E-07 56.5 -6.0 94 8-118 31-124 (326)
78 smart00369 LRR_TYP Leucine-ric 89.3 0.27 5.9E-06 28.7 1.7 13 648-660 3-15 (26)
79 smart00370 LRR Leucine-rich re 89.3 0.27 5.9E-06 28.7 1.7 13 648-660 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 89.2 0.35 7.5E-06 28.2 2.1 14 623-636 2-15 (26)
81 smart00370 LRR Leucine-rich re 89.2 0.35 7.5E-06 28.2 2.1 14 623-636 2-15 (26)
82 KOG3864 Uncharacterized conser 88.5 0.077 1.7E-06 48.6 -1.5 34 105-139 151-185 (221)
83 KOG4242 Predicted myosin-I-bin 87.5 2.9 6.3E-05 43.7 8.6 37 106-143 215-254 (553)
84 KOG3864 Uncharacterized conser 87.3 0.044 9.5E-07 50.1 -3.8 37 280-316 150-187 (221)
85 PF13516 LRR_6: Leucine Rich r 86.0 0.13 2.7E-06 29.4 -1.1 13 82-94 3-15 (24)
86 smart00368 LRR_RI Leucine rich 81.1 0.31 6.7E-06 29.1 -0.8 14 54-67 3-16 (28)
87 PF08693 SKG6: Transmembrane a 76.2 2.5 5.5E-05 27.5 2.1 28 741-768 11-38 (40)
88 KOG4242 Predicted myosin-I-bin 76.1 12 0.00027 39.3 8.2 16 254-269 438-453 (553)
89 TIGR00864 PCC polycystin catio 74.2 1.4 3E-05 56.5 1.1 38 677-714 1-38 (2740)
90 smart00365 LRR_SD22 Leucine-ri 72.4 3.2 7E-05 24.2 1.8 14 647-660 2-15 (26)
91 smart00364 LRR_BAC Leucine-ric 61.6 5.9 0.00013 23.1 1.4 18 105-123 2-19 (26)
92 KOG3763 mRNA export factor TAP 54.7 5.5 0.00012 42.8 0.9 64 597-661 216-284 (585)
93 PF02439 Adeno_E3_CR2: Adenovi 53.1 9.4 0.0002 24.4 1.4 20 749-768 14-33 (38)
94 PTZ00382 Variant-specific surf 46.6 13 0.00029 30.1 1.8 15 747-761 73-87 (96)
95 PHA03099 epidermal growth fact 45.2 14 0.00031 30.9 1.8 32 746-777 106-137 (139)
96 PF01102 Glycophorin_A: Glycop 41.6 11 0.00024 32.0 0.6 16 746-761 70-85 (122)
97 PF15102 TMEM154: TMEM154 prot 37.3 22 0.00047 31.1 1.7 11 756-766 75-85 (146)
98 smart00367 LRR_CC Leucine-rich 36.3 25 0.00054 20.3 1.4 12 105-116 2-13 (26)
99 PF04478 Mid2: Mid2 like cell 36.1 21 0.00045 31.4 1.4 11 741-751 50-60 (154)
100 KOG3763 mRNA export factor TAP 32.8 21 0.00046 38.6 1.2 61 80-143 217-283 (585)
101 PF02009 Rifin_STEVOR: Rifin/s 32.1 16 0.00034 36.8 0.1 25 746-770 262-286 (299)
102 TIGR01478 STEVOR variant surfa 30.6 26 0.00056 34.3 1.2 21 749-769 267-287 (295)
103 PF08114 PMP1_2: ATPase proteo 30.5 33 0.00072 22.3 1.3 18 750-767 19-36 (43)
104 PTZ00370 STEVOR; Provisional 30.3 26 0.00057 34.4 1.2 22 748-769 262-283 (296)
105 PF08374 Protocadherin: Protoc 27.7 64 0.0014 30.3 3.1 23 740-762 38-60 (221)
106 PF01299 Lamp: Lysosome-associ 21.7 45 0.00097 34.1 1.2 22 751-772 282-303 (306)
107 PF12191 stn_TNFRSF12A: Tumour 20.6 50 0.0011 27.9 1.0 19 753-771 92-110 (129)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-59 Score=557.82 Aligned_cols=542 Identities=32% Similarity=0.487 Sum_probs=445.8
Q ss_pred CCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEE
Q 004005 81 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 160 (779)
Q Consensus 81 ~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 160 (779)
.+++.|+|++|.+.+..+..|..+++|++|++++|++.+.+|...+.++++|++|++++|.+++.++. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 46777777777777777777777888888888888777777774555777888888887777654442 334555555
Q ss_pred EccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcC
Q 004005 161 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 240 (779)
Q Consensus 161 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (779)
++++|.+ ++..|..++.+++|++|++++|.+.+.+|..+ .++++|++|+++
T Consensus 146 ~Ls~n~~----------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~ 196 (968)
T PLN00113 146 DLSNNML----------------------------SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLA 196 (968)
T ss_pred ECcCCcc----------------------------cccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeecc
Confidence 5554443 33445666677778888888887777777765 577888888888
Q ss_pred CCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccc
Q 004005 241 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 320 (779)
Q Consensus 241 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 320 (779)
+|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|+.|++++|.+.+.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 88877777777778888888888888887777766654 67888888888888877888888888888888888888777
Q ss_pred cchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccC
Q 004005 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN 400 (779)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 400 (779)
+|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..
T Consensus 276 ~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 276 IPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred CchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 776664 4788888888888887777777778888888888888888777888888888888888888888778888888
Q ss_pred CCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEE
Q 004005 401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479 (779)
Q Consensus 401 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 479 (779)
+++|+.|++++|++.+..|..+..+++|+.|++++|++.+..|..+. +++|+.|++++|.+.+.++.. |..++.|+.|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 433 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFL 433 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEE
Confidence 88888888888888877888888888888888888888777766544 678888888888887777765 8899999999
Q ss_pred eccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCc
Q 004005 480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDE 559 (779)
Q Consensus 480 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (779)
++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..++
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~------------- 499 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS------------- 499 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-------------
Confidence 999999999999888899999999999999998877755 468999999999999988887776543
Q ss_pred chhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCC
Q 004005 560 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI 639 (779)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 639 (779)
+|++|++++|++.+.+|..+..+++|++|+|++|.+++.+
T Consensus 500 ----------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 500 ----------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred ----------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 7999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005 640 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 640 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
|..|.++++|+.|+|++|++++.+|..+..+++|+.+++++|++++.+|.. +.+.++....+.||+..|+.+
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999975 678888888999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-55 Score=527.40 Aligned_cols=547 Identities=31% Similarity=0.441 Sum_probs=352.3
Q ss_pred cccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhc-CCCCCCEEEcCCCccc
Q 004005 40 LNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSNQLT 118 (779)
Q Consensus 40 ~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~-~l~~L~~L~L~~n~l~ 118 (779)
|.+..+. ...+++.|+++++.+ .+.++.++..+++|++|+|++|++.+.+|..+. .+++|++|++++|++.
T Consensus 60 w~gv~c~----~~~~v~~L~L~~~~i----~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 60 WQGITCN----NSSRVVSIDLSGKNI----SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CcceecC----CCCcEEEEEecCCCc----cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc
Confidence 5555443 234788888888887 456677788888888888888888777776654 8888888888888887
Q ss_pred CCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCC
Q 004005 119 GSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI 198 (779)
Q Consensus 119 ~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 198 (779)
+.+|. +.+++|++|++++|.+++..+ ..++.+++|++|++++|.+.+..+.. +....+|+.|++ +.+.+.+.
T Consensus 132 ~~~p~---~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L-~~n~l~~~ 203 (968)
T PLN00113 132 GSIPR---GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEFLTL-ASNQLVGQ 203 (968)
T ss_pred cccCc---cccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChh---hhhCcCCCeeec-cCCCCcCc
Confidence 76664 457888888888888875444 35777888888888877665432221 122234444444 33333344
Q ss_pred CchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccc
Q 004005 199 FPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD 278 (779)
Q Consensus 199 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 278 (779)
.|..+..+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 44444455555555555555544444443 34455555555555544444444444555555555555444444433332
Q ss_pred cCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCE
Q 004005 279 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358 (779)
Q Consensus 279 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 358 (779)
+++|++|++++|.+.+.+|..+.++++|+.|++++|.+ .+..+..+..+++|+.
T Consensus 283 -l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-------------------------~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 283 -LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-------------------------TGKIPVALTSLPRLQV 336 (968)
T ss_pred -ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc-------------------------CCcCChhHhcCCCCCE
Confidence 34444444444444444444444444444444444444 4444444444444555
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcC
Q 004005 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 438 (779)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 438 (779)
|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 55555544444444444444555555555544444444444444555555555554444444444455555555555554
Q ss_pred ccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccc
Q 004005 439 SGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQ 517 (779)
Q Consensus 439 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 517 (779)
++..|..+. ++.|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+..|..+ +.++|+.|++++|++++..|..
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChh
Confidence 444433332 444555555555554544444 5678889999999999888777765 4588999999999999888888
Q ss_pred ccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecccc
Q 004005 518 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV 597 (779)
Q Consensus 518 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (779)
+..+++|+.|++++|.+.+.+|..+..++
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--------------------------------------------------- 523 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCK--------------------------------------------------- 523 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCcc---------------------------------------------------
Confidence 99999999999999999988887776544
Q ss_pred ccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005 598 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 677 (779)
Q Consensus 598 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 677 (779)
+|++|++++|.+++.+|..+..+++|+.|+|++|++++.+|..+.++++|++|++++|++.+.+|.. ..+.++....
T Consensus 524 --~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~ 600 (968)
T PLN00113 524 --KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASA 600 (968)
T ss_pred --CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhh
Confidence 7999999999999999999999999999999999999999999999999999999999999988854 4444555566
Q ss_pred ccCCcCcc
Q 004005 678 VAYNNLSG 685 (779)
Q Consensus 678 l~~N~l~~ 685 (779)
+.+|+..|
T Consensus 601 ~~~n~~lc 608 (968)
T PLN00113 601 VAGNIDLC 608 (968)
T ss_pred hcCCcccc
Confidence 77887544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-42 Score=344.21 Aligned_cols=414 Identities=24% Similarity=0.273 Sum_probs=206.5
Q ss_pred CcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEcc
Q 004005 234 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 313 (779)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls 313 (779)
-++|++++|++.......|..+++|+++.+.+|.++ .||..... ..+++.|++.+|.|+..-.+++..++.|+.||||
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 344555555555555555555555555555555554 45533322 3345555555555554444455555555555555
Q ss_pred CCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCC
Q 004005 314 NNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK 393 (779)
Q Consensus 314 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 393 (779)
.|.|. +++...|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|++.-.
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 55554 44444433334455555555555444444444444444444444444433334444444444444444444322
Q ss_pred cCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCC
Q 004005 394 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 473 (779)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 473 (779)
--..|.++++|+.|.+..|++.......|..+.++++|+++.|++.. +..+.+.++
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------------vn~g~lfgL 292 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------------VNEGWLFGL 292 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------------hhccccccc
Confidence 22334444444444444444443333334444444444444443331 112224455
Q ss_pred CCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccC
Q 004005 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 553 (779)
Q Consensus 474 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 553 (779)
++|+.|++++|.|..+.++....+++|+.|+|+.|+++...+..|..+..|++|.|++|.++.....+|..
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--------- 363 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--------- 363 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH---------
Confidence 55555666666555555555555555666666666555555555555555555555555554322222222
Q ss_pred CCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc---ccCCCCCCEEEC
Q 004005 554 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ---IGNLTRIQTLNL 630 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L 630 (779)
+++|++|||++|.++..+.++ |.++++|+.|+|
T Consensus 364 --------------------------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 364 --------------------------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred --------------------------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 224555666666555433322 555555666666
Q ss_pred cccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCC
Q 004005 631 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 710 (779)
Q Consensus 631 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~ 710 (779)
.+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|+.|.+..-.+-|.|. +.++..|.+..++. .
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq-----l~Wl~qWl~~~~lq--~ 471 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ-----LKWLAQWLYRRKLQ--S 471 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc-----HHHHHHHHHhcccc--c
Confidence 6666554444555566666666666666555555555555 55555555544444432 11222222221211 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCc
Q 004005 711 LPLPICRSPATMPEASIGNEQDDNL 735 (779)
Q Consensus 711 ~~l~~c~~~~~~~~~~~~~~~~~~~ 735 (779)
.....|.+|+...++++...+..++
T Consensus 472 sv~a~CayPe~Lad~~i~svd~~~l 496 (873)
T KOG4194|consen 472 SVIAKCAYPEPLADQSIVSVDTANL 496 (873)
T ss_pred ceeeeccCCcccccceeEeechhhc
Confidence 1112499999988887777666655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-41 Score=334.81 Aligned_cols=373 Identities=26% Similarity=0.308 Sum_probs=177.0
Q ss_pred EEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC
Q 004005 260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339 (779)
Q Consensus 260 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 339 (779)
.|++++|.+. .+....+..+++|+.+++..|.++ .+|.......+|+.|+|.+|.|. ++...-.+.++.|+.|||+.
T Consensus 82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 3555555544 222222333455555555555444 33443333334555555555554 33333333345555555555
Q ss_pred cccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC
Q 004005 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 419 (779)
Q Consensus 340 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 419 (779)
|.|..+....|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++...+..|..+++|+.|++..|++.-..-
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 55544444444444445555555555554444445555555555555555554444444455555555555554442222
Q ss_pred cccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCC
Q 004005 420 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499 (779)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 499 (779)
..|.++++|+.|.+..|++. .+.+++|.++.++++|+|+.|++...-.+++-+++.
T Consensus 239 ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred hhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccch
Confidence 33445555555555444443 122333444555555555555554444444555555
Q ss_pred CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005 500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579 (779)
Q Consensus 500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (779)
|+.|++++|.|....++.++.+++|++|+|+.|+|+...+..|..+.
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~--------------------------------- 341 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS--------------------------------- 341 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH---------------------------------
Confidence 55555555555444444444455555555555555444444333221
Q ss_pred ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCC---CCCCCCCCCEEECCC
Q 004005 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS---TFSNLKHVESLDLSN 656 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~ 656 (779)
.|++|+|++|.+...-..+|.++++|++|||++|.+.+.+.+ .|.++++|+.|++.+
T Consensus 342 --------------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 342 --------------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred --------------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 345555555555444444455555555555555555433332 344455555555555
Q ss_pred CcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005 657 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713 (779)
Q Consensus 657 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 713 (779)
|++..+...+|.++.+|+.|||.+|.|...-|..|..+ .+.++.+..-.++|+|.+
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 55544444455555555555555555554444444444 444444444445555544
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.9e-39 Score=308.77 Aligned_cols=389 Identities=28% Similarity=0.403 Sum_probs=221.6
Q ss_pred hhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCC
Q 004005 202 FLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP 281 (779)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~ 281 (779)
.++.+..++.++..+|+++ ..|..+ .++.++..+++.+|++....+..+. ++.|++||...|.++ .+|+.++. +.
T Consensus 132 ~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~ 206 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LE 206 (565)
T ss_pred hHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hh
Confidence 3445556677777777776 455554 3566666666666666544433333 555555555555554 44544443 44
Q ss_pred CCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEc
Q 004005 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361 (779)
Q Consensus 282 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 361 (779)
+|+.|++..|++. ..| .|.++..|+.+.++.|.|. .+|.....+++++..|+++.|++
T Consensus 207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl------------------- 264 (565)
T KOG0472|consen 207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL------------------- 264 (565)
T ss_pred hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc-------------------
Confidence 4455555555444 233 3444455555555555444 44444444444444444444444
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCC-----CCCCcE------
Q 004005 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQ-----LDSLQI------ 430 (779)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~------ 430 (779)
. ..|+.+.-+++|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+-.+.+.+ ++.|+.
T Consensus 265 -----k-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 265 -----K-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred -----c-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 4 33444444444444555544444 233344444 4444444444433211110000 000000
Q ss_pred EEc-cC------CcCccCCCCccCcccccEEEccCcccccccCcccccCC--CCccEEeccCccCCCccCccccCCCCCC
Q 004005 431 LDI-SD------NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC--SSLVTLDLSYNRLNGSIPDWVDGLSQLS 501 (779)
Q Consensus 431 L~l-~~------n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 501 (779)
+.- .+ ....+..+......+.+.|++++-++ ..+|...|... .-.+..+++.|++. ..|..+..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence 000 00 00112233333345566666666665 34555545432 23667888888877 4666565555543
Q ss_pred -EEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccc
Q 004005 502 -HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 580 (779)
Q Consensus 502 -~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (779)
.+.+++|.+. .+|..++.+++|..|++++|.+. .+|..+..+
T Consensus 415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l----------------------------------- 457 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL----------------------------------- 457 (565)
T ss_pred HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh-----------------------------------
Confidence 4445555554 66777888888888888888765 344433332
Q ss_pred eeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 660 (779)
..|+.||++.|++. ..|..+..+..|+.+-.++|++....|+.+.++.+|.+|||.+|.+.
T Consensus 458 ------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 458 ------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ------------------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 25888888888887 67888777778888888888888777777888888888888888887
Q ss_pred CCCcccccCCCCCcEEeccCCcCc
Q 004005 661 GKIPHQLVELKTLEVFSVAYNNLS 684 (779)
Q Consensus 661 ~~~~~~~~~l~~L~~L~l~~N~l~ 684 (779)
.+|..++++++|+.|++.||+|.
T Consensus 519 -~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 -QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -hCChhhccccceeEEEecCCccC
Confidence 66778888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.1e-39 Score=308.12 Aligned_cols=488 Identities=25% Similarity=0.353 Sum_probs=351.7
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI 132 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L 132 (779)
..++.|.+++|++ ..+.+.+.++..|.+|++++|+++ ..|.+++.+.+++.++.++|.+. .+|+ .++.+.+|
T Consensus 45 v~l~~lils~N~l-----~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDL-----EVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL 116 (565)
T ss_pred cchhhhhhccCch-----hhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence 4577888888887 455567788888888888888877 67888888888888888888887 7887 78888888
Q ss_pred CEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEE
Q 004005 133 EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 212 (779)
Q Consensus 133 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 212 (779)
.+++.+.|.+... + ..++.+..+..++..+|++.. .|..+..+.++..+
T Consensus 117 ~~l~~s~n~~~el-~-~~i~~~~~l~dl~~~~N~i~s-----------------------------lp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 117 VKLDCSSNELKEL-P-DSIGRLLDLEDLDATNNQISS-----------------------------LPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhccccceeec-C-chHHHHhhhhhhhcccccccc-----------------------------CchHHHHHHHHHHh
Confidence 8888888877632 2 245566666666655555442 46677778889999
Q ss_pred EccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCC
Q 004005 213 DLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 292 (779)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 292 (779)
++.+|++. ..|.... +++.|++++.-.|.+. .+|..++.+.+|+.|++..|++. ..|+ +.. +..|+.+.++.|.
T Consensus 166 ~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe-f~g-cs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 166 DLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE-FPG-CSLLKELHVGENQ 239 (565)
T ss_pred hccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC-CCc-cHHHHHHHhcccH
Confidence 99999998 4555554 4899999999888775 67889999999999999999997 7773 333 6789999999999
Q ss_pred CCcccCcc-ccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC
Q 004005 293 LDGSIPSS-FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 371 (779)
Q Consensus 293 ~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 371 (779)
|. .+|.+ ...++++.+||+.+|+++ +.|+.+.. +.+|+.|++++|.+++ .+..++++ +|+.|-+.+|.+..+-.
T Consensus 240 i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 240 IE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred HH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHH
Confidence 98 45554 458999999999999999 99988864 7889999999999985 55667777 88888898888763211
Q ss_pred ccccCCCC---CCEEEccCCCCCCCcCccccCCCCCcEEEccCCc-ccCCcCcccCCCCCCcEEEccCCcCccCCCCccC
Q 004005 372 QSLSKCSS---LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH-LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH 447 (779)
Q Consensus 372 ~~~~~l~~---L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 447 (779)
+ +-.... |++|.= .+....+ +.- +.=.-+.-. .....| ....+.+.+.|++++-+++.++...|.
T Consensus 315 ~-ii~~gT~~vLKyLrs---~~~~dgl---S~s---e~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 315 E-IISKGTQEVLKYLRS---KIKDDGL---SQS---EGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred H-HHcccHHHHHHHHHH---hhccCCC---CCC---cccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHH
Confidence 1 111110 111100 0110000 000 000000000 001111 122345667777777777766666665
Q ss_pred cc---cccEEEccCcccccccCcccccCCCCc-cEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCC
Q 004005 448 PL---SIKQVHLSKNMLHGQLKRGTFFNCSSL-VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 523 (779)
Q Consensus 448 ~~---~L~~L~l~~n~~~~~~~~~~~~~~~~L-~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 523 (779)
.. -.+..++++|++ .++|.. +..+..+ +.+.+++|.+. .+|..+..+++|..|++++|.+. ..|..+..+..
T Consensus 384 a~~~~~Vt~VnfskNqL-~elPk~-L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~ 459 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQL-CELPKR-LVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR 459 (565)
T ss_pred HhhhcceEEEecccchH-hhhhhh-hHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhh
Confidence 32 266777788777 455555 4334333 34566666655 78888899999999999999887 67777888889
Q ss_pred CCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005 524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603 (779)
Q Consensus 524 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 603 (779)
|+.++++.|++. ..|.+....+ .++.
T Consensus 460 Lq~LnlS~NrFr-~lP~~~y~lq-----------------------------------------------------~lEt 485 (565)
T KOG0472|consen 460 LQTLNLSFNRFR-MLPECLYELQ-----------------------------------------------------TLET 485 (565)
T ss_pred hheecccccccc-cchHHHhhHH-----------------------------------------------------HHHH
Confidence 999999999875 3444432222 3666
Q ss_pred EEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660 (779)
Q Consensus 604 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 660 (779)
+-.++|++....|..+.++.+|..|||.+|.+. .+|..++++++|++|++++|++.
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 667779998777777999999999999999999 77888999999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.7e-35 Score=307.71 Aligned_cols=406 Identities=26% Similarity=0.337 Sum_probs=230.8
Q ss_pred ccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCccccc
Q 004005 73 LDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLF 152 (779)
Q Consensus 73 l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~ 152 (779)
+|..+-.-..++.|+++.|.+....-+.+.+.-+|+.||+++|++. ..|. .+..+.+|+.|+++.|.+.. .+ ....
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~-vp-~s~~ 88 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRS-VP-SSCS 88 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhh-Cc-hhhh
Confidence 3333333344555555555443222233344444666666666554 4554 45555566666666655542 12 2344
Q ss_pred CCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCC
Q 004005 153 NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 232 (779)
Q Consensus 153 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 232 (779)
++.+|+++++.+|.+. .+|..+..+.+|++|+++.|.+. .+|..+ ..+.
T Consensus 89 ~~~~l~~lnL~~n~l~-----------------------------~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt 137 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-----------------------------SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLT 137 (1081)
T ss_pred hhhcchhheeccchhh-----------------------------cCchhHHhhhcccccccchhccC-CCchhH-Hhhh
Confidence 5555555555544433 13455555566666666666655 455544 4555
Q ss_pred CCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEc
Q 004005 233 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 312 (779)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 312 (779)
.++.+..++|.-.. .++.. .++++++..|.+.+.++..... +.. .+++.+|.+. -..+..++.|+.+..
T Consensus 138 ~~~~~~~s~N~~~~----~lg~~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 138 AEEELAASNNEKIQ----RLGQT-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHC 206 (1081)
T ss_pred HHHHHhhhcchhhh----hhccc-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhh
Confidence 56666666651111 11111 1566666666666555555433 222 4777777665 223556677777777
Q ss_pred cCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCC
Q 004005 313 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG 392 (779)
Q Consensus 313 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 392 (779)
..|.+. .+. ..-++++.|+.++|.+..... -..-.+|++++++.|++. .+|+++..+.+|+.++..+|.++
T Consensus 207 ~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~- 277 (1081)
T KOG0618|consen 207 ERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV- 277 (1081)
T ss_pred hhcccc-eEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-
Confidence 777775 222 135678888888887773222 123457888888888887 44578888888888888888885
Q ss_pred CcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC--cccccEEEccCcccccccCcccc
Q 004005 393 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH--PLSIKQVHLSKNMLHGQLKRGTF 470 (779)
Q Consensus 393 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~ 470 (779)
..|..+...++|+.+.+..|.+. .+|....++++|++|++..|++...++..+. ...+..+..+.|++.. .+...=
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e 355 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEE 355 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccc
Confidence 56666777788888888888887 5556667788888888888887644443332 1224445545444422 111111
Q ss_pred cCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCC
Q 004005 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535 (779)
Q Consensus 471 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 535 (779)
...+.|+.|.+.+|.+++..-..+.++.+|+.|+|++|++...+...+.++..|++|++++|+++
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 22345556666666665544444555556666666666655444444555555555555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.8e-33 Score=295.70 Aligned_cols=486 Identities=28% Similarity=0.319 Sum_probs=302.3
Q ss_pred CCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchh
Q 004005 21 LEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC 100 (779)
Q Consensus 21 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~ 100 (779)
+..|++..|. +...-.+.+. +.-+|+.||+++|.+ ..+|..+..+.+|+.|+++.|.|. ..|.+
T Consensus 23 ~~~ln~~~N~---------~l~~pl~~~~-~~v~L~~l~lsnn~~-----~~fp~~it~l~~L~~ln~s~n~i~-~vp~s 86 (1081)
T KOG0618|consen 23 LQILNLRRNS---------LLSRPLEFVE-KRVKLKSLDLSNNQI-----SSFPIQITLLSHLRQLNLSRNYIR-SVPSS 86 (1081)
T ss_pred HHhhhccccc---------cccCchHHhh-heeeeEEeecccccc-----ccCCchhhhHHHHhhcccchhhHh-hCchh
Confidence 6777777776 3322134444 556699999998887 677888888899999999988877 66788
Q ss_pred hcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCC
Q 004005 101 MANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 180 (779)
Q Consensus 101 ~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 180 (779)
.+++.+|++|.|.+|.+. .+|. .+..+.+|++|++++|.+.. +|. .+..+..+..+..++|...
T Consensus 87 ~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~-~Pl-~i~~lt~~~~~~~s~N~~~------------ 150 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGP-IPL-VIEVLTAEEELAASNNEKI------------ 150 (1081)
T ss_pred hhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCC-Cch-hHHhhhHHHHHhhhcchhh------------
Confidence 888899999999988887 7887 78888999999999888762 332 3445555555555554100
Q ss_pred cccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCE
Q 004005 181 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQ 260 (779)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 260 (779)
..++.. .++.+++..+.+.+.++... ..+.. .|++.+|.+. ...+..+++|+.
T Consensus 151 --------------------~~lg~~-~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 151 --------------------QRLGQT-SIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLANLEV 203 (1081)
T ss_pred --------------------hhhccc-cchhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhccchhh
Confidence 001111 25666677676666665543 23333 4777777765 234556667777
Q ss_pred EEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCc
Q 004005 261 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNN 340 (779)
Q Consensus 261 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 340 (779)
+....|++. .+. ..-++++.|..+.|.++...+. ..-.+|+++++++|.+. .+| .+...+.+|+.++..+|
T Consensus 204 l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 204 LHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHN 274 (1081)
T ss_pred hhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccceEecccch
Confidence 777766654 111 1124666666666666532221 12245666666666665 556 33334666666666666
Q ss_pred ccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCc
Q 004005 341 NLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 420 (779)
Q Consensus 341 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 420 (779)
.+. ..+..+....+|+.|++..|.+. -+|....+++.|++|++..|.+....+..+.-...
T Consensus 275 ~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~----------------- 335 (1081)
T KOG0618|consen 275 RLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA----------------- 335 (1081)
T ss_pred hHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhH-----------------
Confidence 664 23344445566666666666655 23334455566666666666655322222222211
Q ss_pred ccCCCCCCcEEEccCCcCccCCC-CccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCC
Q 004005 421 EFCQLDSLQILDISDNNISGSLP-SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499 (779)
Q Consensus 421 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 499 (779)
+|+.++.+.|++..... .....+.|+.|++.+|.++....+- +.+..+|+.|+|++|++.......+.+++.
T Consensus 336 ------~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 336 ------SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred ------HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHH
Confidence 13344444444332211 1112445667777777776655554 788899999999999999655566889999
Q ss_pred CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005 500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579 (779)
Q Consensus 500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (779)
|+.|+|+||+++ .+|..+..+..|++|...+|++.. .| .+..
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~----------------------------------- 450 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQ----------------------------------- 450 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhh-----------------------------------
Confidence 999999999999 667888899999999999988762 22 2222
Q ss_pred ceeeeeeccceeeeccccccCcceEEccCCccccc-CcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCC
Q 004005 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 657 (779)
++.|+.+|+|.|+++.. +|..... ++|++|||++|.-.......|..+..+...++.-|
T Consensus 451 ------------------l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 451 ------------------LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ------------------cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 23677888888877643 2222222 67777777777644344455555555555555555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.8e-31 Score=270.19 Aligned_cols=365 Identities=29% Similarity=0.388 Sum_probs=224.6
Q ss_pred ccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEc
Q 004005 184 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV 263 (779)
Q Consensus 184 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 263 (779)
.+..+++.|....+.+|.....++.+++|.|...++. .+|..+ +.+.+|++|.+.+|++... ...+..++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 3445554444444555666666666666666655554 455554 4555566666555555422 234444555555555
Q ss_pred cCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccC
Q 004005 264 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 343 (779)
Q Consensus 264 ~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 343 (779)
..|++.. .-+|..+-.+..|+.|+||+|++. +.|..+. .-.++-.|++++|+|.
T Consensus 86 R~N~LKn------------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 86 RDNNLKN------------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hcccccc------------------------CCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc
Confidence 5544431 134555556666666666666666 6666554 3556666777777766
Q ss_pred ccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCccc-CCcCccc
Q 004005 344 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE-GPIPVEF 422 (779)
Q Consensus 344 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~ 422 (779)
.++...|.+++.|-.|||++|++. .+|..+..+..|++|++++|++....-..+..+++|+.|.+++.+-+ .-+|.++
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 665555666677777777777766 44555666777777777777765443344555666777777766433 2456667
Q ss_pred CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH 502 (779)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 502 (779)
..+.+|..+|++.|.+...+.. +..+++|+.|+||+|+|+. ..-......+|++
T Consensus 219 d~l~NL~dvDlS~N~Lp~vPec-------------------------ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVPEC-------------------------LYKLRNLRRLNLSGNKITE-LNMTEGEWENLET 272 (1255)
T ss_pred hhhhhhhhccccccCCCcchHH-------------------------HhhhhhhheeccCcCceee-eeccHHHHhhhhh
Confidence 7777777777777766522221 3445555566666665552 2223334456667
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCCcCCCC-CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccce
Q 004005 503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI 581 (779)
Q Consensus 503 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (779)
|+++.|+++ ..|++++.++.|+.|.+.+|+++-. +|+.++.+.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~----------------------------------- 316 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI----------------------------------- 316 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------------------------------
Confidence 777777766 5666667777777777777765421 333333322
Q ss_pred eeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005 582 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660 (779)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 660 (779)
.|+++..++|.+. .+|+.+..+..|+.|.|+.|++. .+|+++.-++.|+.||++.|+-.
T Consensus 317 ------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 ------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 5677777777776 67888888888888888888887 67888888888888888888776
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-31 Score=268.31 Aligned_cols=364 Identities=25% Similarity=0.362 Sum_probs=203.9
Q ss_pred CCccCEEEccCCcCC-CCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCC
Q 004005 255 HKRLRQLDVSNNNIR-GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 333 (779)
Q Consensus 255 ~~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 333 (779)
++-.+-+|+++|.++ +.+|..... ++.++.|.+...++. .+|+.++.+.+|++|.+++|++. .+...+. .++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence 345556677777766 344544433 556666666666555 55666666666666666666655 3333332 366666
Q ss_pred EEEccCcccCc-cCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCC
Q 004005 334 FLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412 (779)
Q Consensus 334 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 412 (779)
.+.+..|++.. -+|..+..+..|+.|||++|++. ..|..+...+++-.|++++|+|..+....|-+++.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 66666665542 23444455666666666666666 55555666666666666666666444455566666666666666
Q ss_pred cccCCcCcccCCCCCCcEEEccCCcCccC-CCCccCcccccEEEccCcccc-cccCcccccCCCCccEEeccCccCCCcc
Q 004005 413 HLEGPIPVEFCQLDSLQILDISDNNISGS-LPSCFHPLSIKQVHLSKNMLH-GQLKRGTFFNCSSLVTLDLSYNRLNGSI 490 (779)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 490 (779)
++. ..|.....+..|++|++++|.+... ......+.+|+.|.+++.+-+ ..+|.. +.++.+|..+|+|.|.+. .+
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC-cc
Confidence 665 3444455566666666666654311 111112334444455443321 123332 455555666666666555 45
Q ss_pred CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005 491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570 (779)
Q Consensus 491 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (779)
|+.+-.+++|+.|+|++|+|+. .........+|++|++++|+++ ..|.++..++
T Consensus 238 Pecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------ 291 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------ 291 (1255)
T ss_pred hHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH------------------------
Confidence 5555555666666666666552 2222333445555666666554 3444443332
Q ss_pred cccccccccceeeeeeccceeeeccccccCcceEEccCCcccc-cCcccccCCCCCCEEECcccccccCCCCCCCCCCCC
Q 004005 571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 649 (779)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 649 (779)
.|+.|+..+|+++- -+|..++.+.+|+++..++|.+. ..|+++..+..|
T Consensus 292 -----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 292 -----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred -----------------------------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 45566666665542 25556666666666666666665 566666666666
Q ss_pred CEEECCCCcCCCCCcccccCCCCCcEEeccCCcC
Q 004005 650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 683 (779)
Q Consensus 650 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 683 (779)
+.|.|+.|++. .+|+++.-++.|+.||++.|+=
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 66666666665 5566666666666666666653
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-27 Score=229.91 Aligned_cols=394 Identities=22% Similarity=0.233 Sum_probs=228.9
Q ss_pred CCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccC-CcCccccchhhhhCCCCCC
Q 004005 255 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQ 333 (779)
Q Consensus 255 ~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~ 333 (779)
.+.-.+++|..|+|+ .+|...|..+++|+.|++++|.|+.+.|.+|.++++|..|.+.+ |+|+ .+|...|.++..++
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 356678888888887 88888888888899999999998888899999999888887766 7887 88888888899999
Q ss_pred EEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCC------------CCcCccccCC
Q 004005 334 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL------------GKIPRWLGNL 401 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~------------~~~~~~~~~l 401 (779)
.|.+.-|++..+..+.|..++++..|.+.+|.+..+-..+|..+..++.+.+..|.+. ...+..+++.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 9988888888888888889999999999999888555568888888888888887732 1122223333
Q ss_pred CCCcEEEccCCcccCCcCcccCC-CCCCcEEEccCCcCccCCC-CccC-cccccEEEccCcccccccCcccccCCCCccE
Q 004005 402 TRLQYIIMPNNHLEGPIPVEFCQ-LDSLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478 (779)
Q Consensus 402 ~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 478 (779)
.-.....+.+.++..+.+..|.. +.++..=-.+.+...++.| .+|. +++|++|++++|+++ .+.+++|.+...+++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhh
Confidence 33333333333333222222211 1111100011111111112 1222 445555555555553 233344666666666
Q ss_pred EeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCC
Q 004005 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 558 (779)
Q Consensus 479 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 558 (779)
|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++...-.-++-.- +.........+.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-WLRKKSVVGNPR 381 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-HHhhCCCCCCCC
Confidence 6666666655555556666666666666666666566666666666666666665432110000000 000000111111
Q ss_pred cchhhhhh-------------ccc-----c--ccc---ccccccceeeeeeccceeeeccccccCcceEEccCCcccccC
Q 004005 559 EQFEIFFS-------------IEG-----H--QGF---LEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 615 (779)
Q Consensus 559 ~~~~~~~~-------------~~~-----~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 615 (779)
.+.+.+.. ..+ . ... ...-..+++.++.+....++.+ .+...++|++.+|.++ .+
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-iP~d~telyl~gn~~~-~v 459 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-IPVDVTELYLDGNAIT-SV 459 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-CCchhHHHhcccchhc-cc
Confidence 11111000 000 0 000 0001223444555544444443 3345667777777777 45
Q ss_pred cccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCC
Q 004005 616 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657 (779)
Q Consensus 616 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 657 (779)
|.. .+.+| .+++++|+|.......|.++++|.+|-|++|
T Consensus 460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 555 45566 7777777777666667777777777777665
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=4.8e-26 Score=219.45 Aligned_cols=300 Identities=24% Similarity=0.245 Sum_probs=157.9
Q ss_pred ccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC-CCCCCCcCccc
Q 004005 320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN-NSLLGKIPRWL 398 (779)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~ 398 (779)
++|..+ .+.-.+++|..|.|+.+.+.+|..+++|++|||++|.|+.+.|++|.+++.+.+|-+.+ |+|++.....|
T Consensus 60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 444443 33455566666666666666666666666666666666666666666666655555444 55655444556
Q ss_pred cCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCcc
Q 004005 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477 (779)
Q Consensus 399 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 477 (779)
.++.+++.|.+.-|++..+..+.|..++++..|.+.+|.+..+....+. ..+++.+.+..|.+.. ..+++.+.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla 210 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLA 210 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhh
Confidence 6666666666666666555555566666666666666555433222221 2223333333322100 01111111
Q ss_pred EEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccC-CCCCCEEEccCCcCCCCCC-cccccCcccccccCCC
Q 004005 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE-LNQLQLLDLSNNNLHGPIP-PCFDNTTLHESYSNSS 555 (779)
Q Consensus 478 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~ 555 (779)
.. +. ..|-.+++..-.....+.+.++....+..|.. ..++..--.+.+...+..| .+|
T Consensus 211 ~~-~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf------------- 270 (498)
T KOG4237|consen 211 DD-LA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF------------- 270 (498)
T ss_pred hH-Hh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH-------------
Confidence 10 00 01111222222223333333333222222211 0111100011111111111 111
Q ss_pred CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005 556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 635 (779)
+.+++|++|+|++|+++++.+.+|.++..+++|.|..|+|
T Consensus 271 ----------------------------------------~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 271 ----------------------------------------KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred ----------------------------------------hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 2245677777777777777777777777777777777777
Q ss_pred ccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 688 (779)
.......|.++..|++|+|.+|+|+.+.|.+|..+.+|.+|++-.|++.|.|.
T Consensus 311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 76666777777777777777777777777777777777777777777777665
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=9.1e-22 Score=235.49 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=29.0
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 658 (779)
+|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 3555555555554 345555555555555555532222344444555555555555553
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.4e-21 Score=233.98 Aligned_cols=336 Identities=22% Similarity=0.282 Sum_probs=217.0
Q ss_pred ccCCCCcEEECCCCC------CCcccCccccCCC-CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccC
Q 004005 278 DVLPSLYVFNNSMNA------LDGSIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN 350 (779)
Q Consensus 278 ~~l~~L~~L~l~~n~------~~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 350 (779)
..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++++. .+|..+ ...+|++|++.++.+.. .+..+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~ 630 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGV 630 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-ccccc
Confidence 335566666554332 1223455555543 4777777777765 666554 25677777777777663 34455
Q ss_pred CCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcE
Q 004005 351 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 430 (779)
Q Consensus 351 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 430 (779)
..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 667777777777765444555 36667777777777776555667777777777777777765444555444 5677777
Q ss_pred EEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCC-------ccCccccCCCCCCEE
Q 004005 431 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG-------SIPDWVDGLSQLSHL 503 (779)
Q Consensus 431 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-------~~~~~~~~l~~L~~L 503 (779)
|++++|.....+|.. ..+|+.|++++|.+ ..+|.. + .+++|++|++.++.... ..+..+...++|+.|
T Consensus 709 L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc-c-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 777777554444432 34677777777776 344443 2 45677777776643211 112222334678888
Q ss_pred EccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceee
Q 004005 504 ILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 583 (779)
Q Consensus 504 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (779)
++++|...+.+|..+.++++|+.|++++|...+.+|...
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----------------------------------------- 822 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----------------------------------------- 822 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------------------------
Confidence 888887766777778888888888888875433333322
Q ss_pred eeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCC
Q 004005 584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663 (779)
Q Consensus 584 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 663 (779)
.+++|+.|++++|.....+|.. ..+|++|+|++|.++ .+|..+..+++|+.|++++|.-...+
T Consensus 823 -------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 823 -------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred -------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 1346888888887665455543 357888888888888 56777888888888888886555567
Q ss_pred cccccCCCCCcEEeccCCc
Q 004005 664 PHQLVELKTLEVFSVAYNN 682 (779)
Q Consensus 664 ~~~~~~l~~L~~L~l~~N~ 682 (779)
|..+..+++|+.+++++|.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 7777778888888888874
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.8e-19 Score=199.33 Aligned_cols=113 Identities=27% Similarity=0.399 Sum_probs=51.5
Q ss_pred CEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 004005 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 387 (779)
Q Consensus 308 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 387 (779)
..|+++++.++ .+|..+. ++|+.|++.+|+++... . ..++|++|++++|+++.. |.. .++|+.|++++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cCc---ccccceeeccC
Confidence 34444444444 4444332 24445555555444321 1 134555555555555522 221 23455555555
Q ss_pred CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCcc
Q 004005 388 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440 (779)
Q Consensus 388 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (779)
|.+.. +|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc
Confidence 55542 2221 1345555555555552 222 23456666666665553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4e-19 Score=196.56 Aligned_cols=265 Identities=24% Similarity=0.259 Sum_probs=198.7
Q ss_pred CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEc
Q 004005 330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM 409 (779)
Q Consensus 330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 409 (779)
..-..|+++.+.++. .|..+. ++|+.|++.+|+++. +|. ..++|++|++++|.++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 456789999999885 444443 479999999999884 453 25789999999999884 4432 468899999
Q ss_pred cCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCc
Q 004005 410 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489 (779)
Q Consensus 410 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 489 (779)
++|.+.. +|.. .++|+.|++++|+++..+. .+++|+.|++++|.+.+ ++.. ...|+.|++++|.+++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC----cccccccccccCcccc-
Confidence 9998874 3332 3578889999998885432 24678999999988854 3432 2467888888888874
Q ss_pred cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccc
Q 004005 490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG 569 (779)
Q Consensus 490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (779)
+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---------------------------- 380 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---------------------------- 380 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc----------------------------
Confidence 4532 2478899999998885 3432 3578888888888764 2221
Q ss_pred ccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCC
Q 004005 570 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 649 (779)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 649 (779)
+.+|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. ..+|
T Consensus 381 ----------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L 424 (788)
T PRK15387 381 ----------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGL 424 (788)
T ss_pred ----------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhh
Confidence 1258999999999984 5543 3689999999999994 5653 3478
Q ss_pred CEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCc
Q 004005 650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWK 691 (779)
Q Consensus 650 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 691 (779)
+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 89999999998 689899999999999999999998877644
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=5.7e-17 Score=180.98 Aligned_cols=246 Identities=27% Similarity=0.376 Sum_probs=127.8
Q ss_pred CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (779)
+...|+++++.++.. |..+ .+.|+.|++++|+++. +|..+. ++|++|++++|.+.. +|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence 456666666666643 2222 2456667777766663 333332 366666666666652 343332 356666666
Q ss_pred CCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCcc
Q 004005 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 490 (779)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 490 (779)
+|.+. .+|..+. .+|+.|++++|++.. +|.. + .++|+.|++++|+++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~------------------------LP~~-l--~~sL~~L~Ls~N~Lt~-L 298 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC------------------------LPEN-L--PEELRYLSVYDNSIRT-L 298 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc------------------------cccc-c--CCCCcEEECCCCcccc-C
Confidence 66665 3333332 355666666555553 2222 1 1345566666665553 3
Q ss_pred CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005 491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570 (779)
Q Consensus 491 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (779)
|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---------------------------- 344 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL---------------------------- 344 (754)
T ss_pred cccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh----------------------------
Confidence 33221 345666666666653 22222 2456666666666553 22111
Q ss_pred cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCC
Q 004005 571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650 (779)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 650 (779)
+++|+.|++++|+++ .+|..+. ++|++|+|++|+++. +|..+. .+|+
T Consensus 345 ---------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~ 391 (754)
T PRK15370 345 ---------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQ 391 (754)
T ss_pred ---------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHH
Confidence 124666666666665 3444442 466666666666663 343332 2566
Q ss_pred EEECCCCcCCCCCcccc----cCCCCCcEEeccCCcCc
Q 004005 651 SLDLSNNKLNGKIPHQL----VELKTLEVFSVAYNNLS 684 (779)
Q Consensus 651 ~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~l~ 684 (779)
.|++++|++. .+|..+ ...+.+..+++.+|+++
T Consensus 392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666666665 334322 23456666777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.1e-17 Score=183.06 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=91.8
Q ss_pred CCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEc
Q 004005 282 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 361 (779)
Q Consensus 282 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 361 (779)
+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|...+ ++|+.|++++|.+... +..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence 3455666665555 2343332 35566666666655 4554432 3555555555555432 2221 124555555
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccC
Q 004005 362 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 441 (779)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (779)
++|.+. .+|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|+++..
T Consensus 249 s~N~L~-~LP~~l~--------------------------s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 249 SINRIT-ELPERLP--------------------------SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred cCCccC-cCChhHh--------------------------CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC
Confidence 555544 2233222 244444444444442 232221 2455555555554432
Q ss_pred CCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCC
Q 004005 442 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL 521 (779)
Q Consensus 442 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 521 (779)
.... +.+|+.|++++|.+.. +|.. + .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .
T Consensus 299 P~~l--p~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p 366 (754)
T PRK15370 299 PAHL--PSGITHLNVQSNSLTA-LPET-L--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--P 366 (754)
T ss_pred cccc--hhhHHHHHhcCCcccc-CCcc-c--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--c
Confidence 1111 1233444444444321 2221 1 1455666666666553 343332 45666666666655 233322 2
Q ss_pred CCCCEEEccCCcCC
Q 004005 522 NQLQLLDLSNNNLH 535 (779)
Q Consensus 522 ~~L~~L~l~~n~l~ 535 (779)
++|+.|++++|+++
T Consensus 367 ~~L~~LdLs~N~Lt 380 (754)
T PRK15370 367 PTITTLDVSRNALT 380 (754)
T ss_pred CCcCEEECCCCcCC
Confidence 45666666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.4e-18 Score=179.50 Aligned_cols=243 Identities=25% Similarity=0.252 Sum_probs=121.6
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCC------CcchhhcCCCCCCEEEcCCCcccCCCCcc
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG------SLPWCMANMTSLRILDVSSNQLTGSISSS 124 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~l~~~ 124 (779)
.+.+|++|+++++.+++.+...+++.+...+.|++|+++++.+.+ .++..+..+++|++|++++|.+.+..+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG- 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-
Confidence 666777777777776544444566666667777777777776652 2344566677777777777776533333
Q ss_pred cccCCCC---CCEEEccCccccCcCCc---ccccCC-CCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCC
Q 004005 125 PLVHLTS---IEELMLSNNYFQIPISL---EPLFNY-SRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF 197 (779)
Q Consensus 125 ~l~~l~~---L~~L~l~~n~~~~~~~~---~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 197 (779)
.+..+.+ |++|++++|.+++.... ..+..+ ++|+.|++++|.++.....
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------ 155 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------------------------ 155 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------------------------
Confidence 3444443 77777777665521110 122333 4555555555554421110
Q ss_pred CCchhhcCCCCccEEEccCccCcccCChhh---hhcCCCCcEEEcCCCcCcCC----CCcCcCCCCccCEEEccCCcCCC
Q 004005 198 IFPKFLYHQHDLEYVDLSHIKMNGEFPNWL---LENNTKLETLFLVNDSLAGP----FRLPIHSHKRLRQLDVSNNNIRG 270 (779)
Q Consensus 198 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~i~~ 270 (779)
.++..+..+++|++|++++|.+.+.....+ +..+++|++|++++|.+.+. ....+..+++|++|++++|.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 012233444556666666665553221111 12334566666666655422 12233445566666666665553
Q ss_pred CCCcccccc----CCCCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCc
Q 004005 271 HIPVKIGDV----LPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLT 318 (779)
Q Consensus 271 ~~~~~~~~~----l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~ 318 (779)
.....+... .+.|+.|++++|.++. .+...+..+++|+.+++++|.+.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 222222111 1345555555554431 11222333344555555555444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=2.3e-18 Score=179.75 Aligned_cols=281 Identities=26% Similarity=0.258 Sum_probs=139.1
Q ss_pred EEEccCcccCc-cCcccCCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCCCCC------CcCccccCCC
Q 004005 334 FLALSNNNLQG-HLFSRNFNLTNLQWLQLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLLG------KIPRWLGNLT 402 (779)
Q Consensus 334 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~ 402 (779)
.|+|..+.+.+ .....+..++.|+.++++++.+... ++..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35566665552 2223344556677777777776432 23344555667777777665542 1122344455
Q ss_pred CCcEEEccCCcccCCcCcccCCCC---CCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCC-CCccE
Q 004005 403 RLQYIIMPNNHLEGPIPVEFCQLD---SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC-SSLVT 478 (779)
Q Consensus 403 ~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~ 478 (779)
+|+.|++++|.+.+..+..+..+. +|++|++++|++.+... ..+.. .+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-------------------~~l~~-~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-------------------RLLAK-GLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-------------------HHHHH-HHHhCCCCceE
Confidence 666666666555433333332222 25555555554432100 00111 13333 56666
Q ss_pred EeccCccCCCc----cCccccCCCCCCEEEccCCccccc----ccccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005 479 LDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEGE----VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550 (779)
Q Consensus 479 L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 550 (779)
|++++|.+++. .+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+.....+...
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----- 216 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET----- 216 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----
Confidence 66666666521 223345556666777766666532 22234445566677776666542211111000
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccccc-----CCCCC
Q 004005 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRI 625 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L 625 (779)
....++|++|++++|++++.....+. ..+.|
T Consensus 217 --------------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 217 --------------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred --------------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 01123566666666666542222211 23566
Q ss_pred CEEECccccccc----CCCCCCCCCCCCCEEECCCCcCCCC----CcccccCC-CCCcEEeccCCcC
Q 004005 626 QTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGK----IPHQLVEL-KTLEVFSVAYNNL 683 (779)
Q Consensus 626 ~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l 683 (779)
++|++++|.++. .....+..+++|+++++++|.+... ....+... +.|+++++.+|++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 666666666651 1223344456666777777766633 22333333 5666666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-17 Score=142.53 Aligned_cols=183 Identities=29% Similarity=0.462 Sum_probs=115.4
Q ss_pred ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCC
Q 004005 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 524 (779)
Q Consensus 445 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 524 (779)
.|...+++.|.++.|+++ .+|+. ++.+.+|+.|++++|+|. ..|..++.+++|+.|++.-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 344444555555555553 33443 667778888888888887 56777788888888888888876 677778888888
Q ss_pred CEEEccCCcCCCC-CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005 525 QLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603 (779)
Q Consensus 525 ~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 603 (779)
+.||+.+|++... .|..|-.+ ..|+.
T Consensus 105 evldltynnl~e~~lpgnff~m-----------------------------------------------------~tlra 131 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYM-----------------------------------------------------TTLRA 131 (264)
T ss_pred hhhhccccccccccCCcchhHH-----------------------------------------------------HHHHH
Confidence 8888887776532 23333222 14666
Q ss_pred EEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC---CCcEEeccC
Q 004005 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK---TLEVFSVAY 680 (779)
Q Consensus 604 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~l~~ 680 (779)
|+|+.|.+. .+|..++.+++|+.|.+..|.+. .+|..++.+++|++|++.+|+++ .+|..++.+. +-+.+.+.+
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~ 208 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEE 208 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhh
Confidence 677777765 56666777777777777777766 56666677777777777777776 4554444322 223344455
Q ss_pred CcCcccC
Q 004005 681 NNLSGEI 687 (779)
Q Consensus 681 N~l~~~~ 687 (779)
|++...+
T Consensus 209 NPwv~pI 215 (264)
T KOG0617|consen 209 NPWVNPI 215 (264)
T ss_pred CCCCChH
Confidence 5554333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=7.8e-16 Score=131.89 Aligned_cols=156 Identities=28% Similarity=0.449 Sum_probs=115.5
Q ss_pred CCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCc
Q 004005 350 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 429 (779)
Q Consensus 350 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 429 (779)
+..+.+++.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 335667788888888888 55556888888888888888887 66777888888888888888887 7788888899999
Q ss_pred EEEccCCcCcc-CCCC-ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccC
Q 004005 430 ILDISDNNISG-SLPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 507 (779)
Q Consensus 430 ~L~l~~n~l~~-~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 507 (779)
.||+++|++.. ..|+ .|.+..|+.|++++|.+ ..+|.. .+.+++|+.|.+.+|.+. ..|..++.++.|+.|++++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99998887753 3333 33466677777777766 344444 667777777777777766 4666677777777777777
Q ss_pred Cccc
Q 004005 508 NNLE 511 (779)
Q Consensus 508 n~l~ 511 (779)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 7776
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=2.4e-13 Score=151.98 Aligned_cols=118 Identities=35% Similarity=0.612 Sum_probs=106.3
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCcccc-ccCCcccccCCCCCCCCCC-CCCC
Q 004005 680 YNNLSGEIPEWKAQF-ATFNESSYEGNTFLCGLPL-PICR 717 (779)
Q Consensus 680 ~N~l~~~~p~~~~~~-~~~~~~~~~~n~~~c~~~l-~~c~ 717 (779)
+|++++.+|..+... .....+.+.+|+..|+.|. +.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 3556778999999998753 3363
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=8.8e-13 Score=126.96 Aligned_cols=243 Identities=23% Similarity=0.263 Sum_probs=131.0
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC---CCCCcch-------hhcCCCCCCEEEcCCCcccCC
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND---LRGSLPW-------CMANMTSLRILDVSSNQLTGS 120 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~ 120 (779)
.+..++.++||+|.++.-....+.+.+.+.+.|+.-++++-- ....+|+ ++.++++|++||||.|.+.-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 556666667776666554444555556666666666666531 2223333 334556777777777766422
Q ss_pred CCc---ccccCCCCCCEEEccCccccCcCC------------cccccCCCCCcEEEccCCccceeecccccccCCccccc
Q 004005 121 ISS---SPLVHLTSIEELMLSNNYFQIPIS------------LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 185 (779)
Q Consensus 121 l~~---~~l~~l~~L~~L~l~~n~~~~~~~------------~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 185 (779)
-+. .-++.+..|++|.+.+|.+.-... ......-++|+.+..+.|++.+.....
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~----------- 176 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA----------- 176 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH-----------
Confidence 111 124556677777777766541100 011223344555555555544322111
Q ss_pred EEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCCh---hhhhcCCCCcEEEcCCCcCcCC----CCcCcCCCCcc
Q 004005 186 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPN---WLLENNTKLETLFLVNDSLAGP----FRLPIHSHKRL 258 (779)
Q Consensus 186 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L 258 (779)
+...++.++.|+.+.+..|.+...... .-+..|++|++|+|.+|-++.. ....+..+++|
T Consensus 177 -------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 177 -------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred -------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 223455566777777777766533221 1245678888888888776542 23455667778
Q ss_pred CEEEccCCcCCCCCCccccc----cCCCCcEEECCCCCCCcc----cCccccCCCCCCEEEccCCcC
Q 004005 259 RQLDVSNNNIRGHIPVKIGD----VLPSLYVFNNSMNALDGS----IPSSFGNMKFLQILDLSNNHL 317 (779)
Q Consensus 259 ~~L~l~~n~i~~~~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i 317 (779)
++|++++|.+.......+.. ..|.|+++.+.+|.|+.. +.......+.|+.|++++|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888888776544333322 235566666666665421 112233455566666666655
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=7.1e-11 Score=132.22 Aligned_cols=114 Identities=32% Similarity=0.522 Sum_probs=102.0
Q ss_pred CCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcc
Q 004005 523 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 602 (779)
Q Consensus 523 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 602 (779)
.++.|+|++|.+.|.+|..+..+. +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 367889999999988887776544 799
Q ss_pred eEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCC-CCCcEEeccCC
Q 004005 603 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYN 681 (779)
Q Consensus 603 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N 681 (779)
.|+|++|++.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+... .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988763 57789999999
Q ss_pred cCcccCCC
Q 004005 682 NLSGEIPE 689 (779)
Q Consensus 682 ~l~~~~p~ 689 (779)
+..|..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 98776654
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.7e-12 Score=126.07 Aligned_cols=208 Identities=22% Similarity=0.204 Sum_probs=116.6
Q ss_pred EEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc-hhhcCCCCCCEEEcCCCcccCC--CCcccccCCCCCC
Q 004005 57 YLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGS--ISSSPLVHLTSIE 133 (779)
Q Consensus 57 ~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--l~~~~l~~l~~L~ 133 (779)
.+.+++-.+..++-..+.+.=+++.+|++..|.++.+..... +....|++++.|||++|-+..- +-. ....+++|+
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le 175 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLE 175 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHH-HHHhcccch
Confidence 344444444333334444444677888888888887653221 4677788888888888866521 111 345677777
Q ss_pred EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD 213 (779)
Q Consensus 134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 213 (779)
.|+++.|.+........-. .++.|+.|.
T Consensus 176 ~LNls~Nrl~~~~~s~~~~----------------------------------------------------~l~~lK~L~ 203 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTL----------------------------------------------------LLSHLKQLV 203 (505)
T ss_pred hcccccccccCCccccchh----------------------------------------------------hhhhhheEE
Confidence 7877777665322211001 123566666
Q ss_pred ccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCC
Q 004005 214 LSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 293 (779)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~ 293 (779)
++.|+++..-..+....+|+|+.|++..|........+..-+..|++|||++|++.+.-.-..-..+|.|..|+++.+.+
T Consensus 204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred eccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 66666664444555566777777777777533333334445567777777777765222222223366677777766666
Q ss_pred Ccc-cCcc-----ccCCCCCCEEEccCCcC
Q 004005 294 DGS-IPSS-----FGNMKFLQILDLSNNHL 317 (779)
Q Consensus 294 ~~~-~~~~-----~~~l~~L~~L~Ls~n~i 317 (779)
... .|+. ...+++|++|+++.|++
T Consensus 284 ~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 284 ASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred chhcCCCccchhhhcccccceeeecccCcc
Confidence 532 1221 12344455555555544
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=2.7e-12 Score=131.07 Aligned_cols=174 Identities=32% Similarity=0.495 Sum_probs=116.1
Q ss_pred cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531 (779)
Q Consensus 452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 531 (779)
...+++.|++ ..+|.. +..+..|+.+.+..|.+. .+|..+..+..|+.++++.|++. ..|..++.+ -|+.|-+++
T Consensus 78 ~~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEec
Confidence 3345555554 233333 344445555555555555 44555555555555555555555 344444433 355555555
Q ss_pred CcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcc
Q 004005 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 611 (779)
Q Consensus 532 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 611 (779)
|+++. +|...+ ..+.|..||.+.|.+
T Consensus 153 Nkl~~-lp~~ig-----------------------------------------------------~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 153 NKLTS-LPEEIG-----------------------------------------------------LLPTLAHLDVSKNEI 178 (722)
T ss_pred Ccccc-CCcccc-----------------------------------------------------cchhHHHhhhhhhhh
Confidence 55542 222221 234688899999999
Q ss_pred cccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 612 IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 612 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
. .+|..+.++.+|+.|++..|++. ..|..+..+ .|..||+|.|++. .+|-.|..|..|++|-|.+|+++ ..|.
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 7 68888999999999999999998 456666655 4889999999998 88999999999999999999998 5554
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.8e-11 Score=121.33 Aligned_cols=161 Identities=24% Similarity=0.188 Sum_probs=68.9
Q ss_pred cCCCCcEEEcCCCcCcCCCC-cCcCCCCccCEEEccCCcCCCCC-CccccccCCCCcEEECCCCCCCcccCcc-ccCCCC
Q 004005 230 NNTKLETLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNIRGHI-PVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKF 306 (779)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~ 306 (779)
++.+|+++.+.++.+..... .....|++++.||++.|-+.... -..+...+|+|+.|+++.|++....... -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44556666666665543221 23445666666666666444211 1123333555555555555543211111 113445
Q ss_pred CCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC-ccccCCCCCCEEEc
Q 004005 307 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYL 385 (779)
Q Consensus 307 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l 385 (779)
|+.|.++.|.++-.--......+|+|+.|++..|...........-+..|+.|||++|.+..... .....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 55555555554422222222334555555555543222222222233444455555444442211 12333444444444
Q ss_pred cCCCC
Q 004005 386 NNNSL 390 (779)
Q Consensus 386 ~~n~~ 390 (779)
+.+.+
T Consensus 279 s~tgi 283 (505)
T KOG3207|consen 279 SSTGI 283 (505)
T ss_pred cccCc
Confidence 44443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.2e-10 Score=105.86 Aligned_cols=106 Identities=30% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCCcEEeCCCcccCCCCCCccccccc-CCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccc-cCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL-VHLT 130 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l-~~l~ 130 (779)
.++++|+|++|.|+.+ +.++ .+.+|+.|+|++|.++.. +.+..+++|++|++++|+++ .++. .+ ..++
T Consensus 19 ~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-T
T ss_pred cccccccccccccccc------cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCC
Confidence 3455566665555221 1232 345556666666655532 24555566666666666655 4433 22 3455
Q ss_pred CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccc
Q 004005 131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 168 (779)
Q Consensus 131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 168 (779)
+|++|++++|++........++.+++|+.|++.+|.+.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666665554333445555566666666665554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=4.5e-11 Score=112.35 Aligned_cols=84 Identities=31% Similarity=0.326 Sum_probs=49.3
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCc-ccccCCCCCcEEec
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSV 678 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l 678 (779)
+|+.||||+|.++ .+...-..+.+.+.|.|+.|.|... ++++.+-+|..||+++|+|..... ..+++++.|+.+.+
T Consensus 330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 4556666666555 2333333455666666666666532 345566666777777777653322 35566777777777
Q ss_pred cCCcCccc
Q 004005 679 AYNNLSGE 686 (779)
Q Consensus 679 ~~N~l~~~ 686 (779)
.+||+.+.
T Consensus 407 ~~NPl~~~ 414 (490)
T KOG1259|consen 407 TGNPLAGS 414 (490)
T ss_pred cCCCcccc
Confidence 77777644
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1e-11 Score=126.93 Aligned_cols=196 Identities=26% Similarity=0.397 Sum_probs=155.8
Q ss_pred CCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEE
Q 004005 424 QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL 503 (779)
Q Consensus 424 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 503 (779)
.+.--...|++.|++.......-.+..|+.+.++.|.+ ..++.. ..++..|+++||+.|+++ ..|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~-i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEA-ICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchh-hhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 44455678899999886655555577888888888887 455554 788999999999999998 6777776665 8999
Q ss_pred EccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceee
Q 004005 504 ILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFE 583 (779)
Q Consensus 504 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (779)
.+++|+++ ..|..++....|..||.+.|.+....+ -+..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slps-ql~~--------------------------------------- 187 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGY--------------------------------------- 187 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchH-Hhhh---------------------------------------
Confidence 99999998 677778889999999999999864332 2222
Q ss_pred eeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCC
Q 004005 584 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 663 (779)
Q Consensus 584 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 663 (779)
+.+|+.|.+..|++. .+|..+..| .|..||+|.|++. .+|-.|..|..|++|.|.+|+++ ..
T Consensus 188 --------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP 249 (722)
T KOG0532|consen 188 --------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP 249 (722)
T ss_pred --------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence 236889999999998 577777755 5899999999999 88999999999999999999997 56
Q ss_pred ccccc---CCCCCcEEeccCCc
Q 004005 664 PHQLV---ELKTLEVFSVAYNN 682 (779)
Q Consensus 664 ~~~~~---~l~~L~~L~l~~N~ 682 (779)
|..+. ..+=.++|+..-++
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hHHHHhccceeeeeeecchhcc
Confidence 65543 34556888888774
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3.7e-10 Score=121.17 Aligned_cols=199 Identities=34% Similarity=0.482 Sum_probs=103.4
Q ss_pred cEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCc
Q 004005 405 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 484 (779)
Q Consensus 405 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 484 (779)
..+....+.+... ...+...+.++.+++.+|.++.+.+...... ++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N 150 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDN 150 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccccCccccccch------------------------hhccccccccc
Confidence 3566666665321 1233445667777777777765444332221 24555555555
Q ss_pred cCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhh
Q 004005 485 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF 564 (779)
Q Consensus 485 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (779)
.+. .+|..+..+++|+.|++++|+++. .+......++|+.|++++|++....+. ..
T Consensus 151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~--------------------- 206 (394)
T COG4886 151 KIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPE-IE--------------------- 206 (394)
T ss_pred chh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchh-hh---------------------
Confidence 555 233344555555555555555552 222222455555666666655422111 00
Q ss_pred hhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCC
Q 004005 565 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644 (779)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 644 (779)
.+..|++|.+++|++. ..+..+..+.++..+.+.+|++. ..+..++
T Consensus 207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence 0113555666666433 34455555566666666666665 2345555
Q ss_pred CCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005 645 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 645 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 688 (779)
.++++++|++++|.++...+ +..+.+++.||+++|.++...|
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 66666666666666653333 5556666666666666654444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.5e-10 Score=103.72 Aligned_cols=132 Identities=20% Similarity=0.351 Sum_probs=53.7
Q ss_pred CCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC
Q 004005 14 GFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL 93 (779)
Q Consensus 14 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l 93 (779)
.+.+..++++|+|+++. +.. .+.++..+.+|+.|++++|.+. .+. .+..+++|++|++++|++
T Consensus 14 ~~~n~~~~~~L~L~~n~---------I~~--Ie~L~~~l~~L~~L~Ls~N~I~-----~l~-~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ---------IST--IENLGATLDKLEVLDLSNNQIT-----KLE-GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S-------T-T----TT--EEE--SS--
T ss_pred ccccccccccccccccc---------ccc--ccchhhhhcCCCEEECCCCCCc-----ccc-CccChhhhhhcccCCCCC
Confidence 34566679999999999 442 2334435779999999999994 342 567899999999999999
Q ss_pred CCCcchhh-cCCCCCCEEEcCCCcccCCCCc-ccccCCCCCCEEEccCccccCcC--CcccccCCCCCcEEEccC
Q 004005 94 RGSLPWCM-ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIPI--SLEPLFNYSRLKIFNAEN 164 (779)
Q Consensus 94 ~~~~~~~~-~~l~~L~~L~L~~n~l~~~l~~-~~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~l~~L~~L~l~~ 164 (779)
+.. ...+ ..+++|++|++++|++. .+.. ..++.+++|++|++.+|.++... ....+..+|+|+.||-..
T Consensus 77 ~~i-~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 77 SSI-SEGLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -S--CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred Ccc-ccchHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 854 4445 57999999999999997 3322 35788999999999999987421 123457789999887543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.1e-09 Score=117.57 Aligned_cols=102 Identities=32% Similarity=0.440 Sum_probs=48.9
Q ss_pred EEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCC-CCCEEEccCCCCCCCcCccccCCCCCcEEEccCC
Q 004005 334 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 412 (779)
Q Consensus 334 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 412 (779)
.++...+.+... ......++.++.|++.+|.+... +....... +|+.|++++|.+. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 345555544221 12222345566666666666533 22333332 5666666666555 23334455555555555555
Q ss_pred cccCCcCcccCCCCCCcEEEccCCcCc
Q 004005 413 HLEGPIPVEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (779)
++.. ++......+.|+.|++++|++.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc
Confidence 5552 2222224455555555555554
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=5.9e-11 Score=114.57 Aligned_cols=243 Identities=19% Similarity=0.169 Sum_probs=147.7
Q ss_pred CCCCCCCCCEEeCCCCccccccccccccc----ccchHHhhcCCCCcEEeCCCcccCCCCCCccc-------ccccCCCC
Q 004005 14 GFPHFKSLEHFDMDFTRIALNTSFIALNT----SFLQIISESMPSLKYLSLSYYTLGTNSSGTLD-------QGLCSLVH 82 (779)
Q Consensus 14 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~----~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~-------~~l~~l~~ 82 (779)
....+..+++++|++|. +.. .+...+. +.+.|+.-++|+-.- ......+| +++..+++
T Consensus 25 ~~~~~~s~~~l~lsgnt---------~G~EAa~~i~~~L~-~~~~L~~v~~sd~ft-GR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNT---------FGTEAARAIAKVLA-SKKELREVNLSDMFT-GRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred HhcccCceEEEeccCCc---------hhHHHHHHHHHHHh-hcccceeeehHhhhc-CCcHHHHHHHHHHHHHHHhcCCc
Confidence 35678899999999998 442 3344555 777888888876432 11122333 55667789
Q ss_pred CCEEeccCCCCCCCcch----hhcCCCCCCEEEcCCCcccCCCCc-------------ccccCCCCCCEEEccCccccCc
Q 004005 83 LQELYIASNDLRGSLPW----CMANMTSLRILDVSSNQLTGSISS-------------SPLVHLTSIEELMLSNNYFQIP 145 (779)
Q Consensus 83 L~~L~L~~~~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~l~~-------------~~l~~l~~L~~L~l~~n~~~~~ 145 (779)
|++||||.|.+....++ .+++++.|++|.|.+|.+. .... .....-++|+++..++|.+...
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 99999999988755444 4567899999999999775 1111 1244567899999999987632
Q ss_pred C---CcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCccc
Q 004005 146 I---SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 222 (779)
Q Consensus 146 ~---~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 222 (779)
. ....+...+.|+.+.+..|.+...... .+...+..+++|+.|||..|.++..
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~------------------------al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVT------------------------ALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhH------------------------HHHHHHHhCCcceeeecccchhhhH
Confidence 1 123456678888888888877643221 1223445566666666666655432
Q ss_pred CChhh---hhcCCCCcEEEcCCCcCcCCCCcCc-----CCCCccCEEEccCCcCCCCCC----ccccccCCCCcEEECCC
Q 004005 223 FPNWL---LENNTKLETLFLVNDSLAGPFRLPI-----HSHKRLRQLDVSNNNIRGHIP----VKIGDVLPSLYVFNNSM 290 (779)
Q Consensus 223 ~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~l~~ 290 (779)
....+ +..+++|+++++.+|.+......++ ...|+|+.|.+.+|.|+.... ..+.. .|.|+.|++++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLng 307 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCc
Confidence 22211 2234556666666666554322211 235677777777776652211 11111 46777777777
Q ss_pred CCC
Q 004005 291 NAL 293 (779)
Q Consensus 291 n~~ 293 (779)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 776
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.3e-10 Score=107.74 Aligned_cols=130 Identities=34% Similarity=0.376 Sum_probs=102.8
Q ss_pred CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005 473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 552 (779)
Q Consensus 473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 552 (779)
...|+++|+++|.|+ .+.+.+.-.|.++.|++++|.++.. +.+..+++|+.||+++|.++....- -
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw-h---------- 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW-H---------- 348 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh-H----------
Confidence 367899999999998 4566777789999999999999833 3478899999999999987621100 0
Q ss_pred CCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc
Q 004005 553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 632 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 632 (779)
..+.+++.|.|++|.+.. -..++.+-+|..||+++
T Consensus 349 -------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 349 -------------------------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSS 383 (490)
T ss_pred -------------------------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccc
Confidence 113468899999999863 35677888999999999
Q ss_pred cccccCCC-CCCCCCCCCCEEECCCCcCCC
Q 004005 633 NNLTGSIP-STFSNLKHVESLDLSNNKLNG 661 (779)
Q Consensus 633 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 661 (779)
|+|..... ..++++|-|++|.|.+|++.+
T Consensus 384 N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 384 NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99975432 578999999999999999984
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-09 Score=124.52 Aligned_cols=85 Identities=28% Similarity=0.364 Sum_probs=59.9
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~ 130 (779)
.++.|++|||++|.- ...+|+.+++|.+||+|+|+++.+. .+|..+.++..|.+||+..+.-...+|. ....+.
T Consensus 569 ~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~ 642 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQ 642 (889)
T ss_pred hCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcc
Confidence 677777777777554 4677777777777777777777776 6777777777777777776654434444 455577
Q ss_pred CCCEEEccCcc
Q 004005 131 SIEELMLSNNY 141 (779)
Q Consensus 131 ~L~~L~l~~n~ 141 (779)
+|++|.+....
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 77777776554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.6e-09 Score=80.71 Aligned_cols=60 Identities=52% Similarity=0.671 Sum_probs=33.6
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 659 (779)
+|++|++++|++....+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544444555555555555555555555555555555555555555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.4e-09 Score=81.13 Aligned_cols=61 Identities=41% Similarity=0.634 Sum_probs=57.7
Q ss_pred CCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcC
Q 004005 623 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 683 (779)
Q Consensus 623 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 683 (779)
++|++|++++|+++.+.++.|.++++|++|++++|+++.+.|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988889999999999999999999988889999999999999999985
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.1e-10 Score=120.75 Aligned_cols=86 Identities=24% Similarity=0.283 Sum_probs=57.8
Q ss_pred cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCC---Cccc-ccCCCCCcEE
Q 004005 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK---IPHQ-LVELKTLEVF 676 (779)
Q Consensus 601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~-~~~l~~L~~L 676 (779)
|+.+++++|++. ..+..+..+..+..|++.+|++... ..+...+.+..+....|++... .... ....+.++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 677888888877 3445677777888888888888743 2356666777777777777522 1111 3456677888
Q ss_pred eccCCcCcccCCC
Q 004005 677 SVAYNNLSGEIPE 689 (779)
Q Consensus 677 ~l~~N~l~~~~p~ 689 (779)
.+.+|+.....+.
T Consensus 311 ~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 311 TLELNPIRKISSL 323 (414)
T ss_pred ccccCcccccccc
Confidence 8888887765543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=2.5e-09 Score=122.28 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=80.8
Q ss_pred cCCCCCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEecc
Q 004005 10 VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIA 89 (779)
Q Consensus 10 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~ 89 (779)
++...|..++.|++|||++|. -...+|..++ .+-+||+|+++++.+ ..+|..+.+++.|.+|++.
T Consensus 562 is~~ff~~m~~LrVLDLs~~~---------~l~~LP~~I~-~Li~LryL~L~~t~I-----~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNS---------SLSKLPSSIG-ELVHLRYLDLSDTGI-----SHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred cCHHHHhhCcceEEEECCCCC---------ccCcCChHHh-hhhhhhcccccCCCc-----cccchHHHHHHhhheeccc
Confidence 343458899999999999987 5678899999 999999999999998 6999999999999999999
Q ss_pred CCCCCCCcchhhcCCCCCCEEEcCCCc
Q 004005 90 SNDLRGSLPWCMANMTSLRILDVSSNQ 116 (779)
Q Consensus 90 ~~~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (779)
.+.....+|.....+++|++|.+....
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccchhhhcccccEEEeeccc
Confidence 988766667788889999999997765
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=2.9e-09 Score=114.24 Aligned_cols=197 Identities=28% Similarity=0.297 Sum_probs=113.6
Q ss_pred ccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCcc
Q 004005 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477 (779)
Q Consensus 398 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 477 (779)
+..+++|+.+++.+|.+..+. ..+..+++|++|++++|.|+...+ +..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--------------------------l~~l~~L~ 143 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--------------------------LSTLTLLK 143 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--------------------------hhhccchh
Confidence 334444555555555444221 114455556666666665542211 33344466
Q ss_pred EEeccCccCCCccCccccCCCCCCEEEccCCccccccc-ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCC
Q 004005 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 556 (779)
Q Consensus 478 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 556 (779)
.|++++|.|+.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.......
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~--------------- 205 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD--------------- 205 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH---------------
Confidence 666666666532 224446666666666666664333 1 355667777777777664211110
Q ss_pred CCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCC--CCCEEECcccc
Q 004005 557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT--RIQTLNLSHNN 634 (779)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~ 634 (779)
....+..+++..|.++... .+..+. .|+.+++++|+
T Consensus 206 ----------------------------------------~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 206 ----------------------------------------LLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred ----------------------------------------HHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCc
Confidence 0112444466777766322 222233 38999999999
Q ss_pred cccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCc
Q 004005 635 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684 (779)
Q Consensus 635 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 684 (779)
+. ..+..+..+..+..|++++|++... ..+.....+..+....|++.
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 98 4446788889999999999999744 23455666777777777765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6e-10 Score=104.96 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCCEEeccCCCCCCC-cchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCcc-ccCcCCcccccCCCCCcE
Q 004005 82 HLQELYIASNDLRGS-LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNY-FQIPISLEPLFNYSRLKI 159 (779)
Q Consensus 82 ~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~ 159 (779)
.||+|||++..|+.. +...++.|++|+.|.+.++++.+.|.. .+.+-.+|+.|+++.+. ++.....-.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 588888888877543 344567888889888888888877766 68888888999888764 443222234677888888
Q ss_pred EEccCCccceee
Q 004005 160 FNAENNEIKAEI 171 (779)
Q Consensus 160 L~l~~~~l~~~~ 171 (779)
|++++|.+..+.
T Consensus 265 LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 265 LNLSWCFLFTEK 276 (419)
T ss_pred cCchHhhccchh
Confidence 888888776543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.2e-10 Score=105.37 Aligned_cols=186 Identities=19% Similarity=0.109 Sum_probs=112.6
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCc-ccCCCCcccccCCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ-LTGSISSSPLVHLTS 131 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~l~~l~~ 131 (779)
.+|++||||+..++ ...+--.+..+.+|+.|.|.++++.+.+...+++-.+|+.||++.+. ++..--.-.++.|+.
T Consensus 185 sRlq~lDLS~s~it---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhhee---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 36999999988773 34454556788999999999999998888899999999999999875 221111124688999
Q ss_pred CCEEEccCccccCcCCcccccC-CCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005 132 IEELMLSNNYFQIPISLEPLFN-YSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE 210 (779)
Q Consensus 132 L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 210 (779)
|..|+++.|....+.-.-.... -.+|+.|+++++.-.-..... ...-..+++|.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-------------------------~tL~~rcp~l~ 316 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-------------------------STLVRRCPNLV 316 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-------------------------HHHHHhCCcee
Confidence 9999999987753321111122 246777777765422111111 11123455555
Q ss_pred EEEccCc-cCcccCChhhhhcCCCCcEEEcCCCcCcC-CCCcCcCCCCccCEEEccCCc
Q 004005 211 YVDLSHI-KMNGEFPNWLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNN 267 (779)
Q Consensus 211 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~ 267 (779)
+|||+++ .++......+ -.++.|++|.++.|.... .....+...|.|.+|++.++-
T Consensus 317 ~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 5555554 2332222222 355666666666654221 111345566777777777653
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=3e-09 Score=105.30 Aligned_cols=210 Identities=15% Similarity=-0.039 Sum_probs=109.7
Q ss_pred CCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC-CCCcchhh-cCCCCCCEEEcCCCc-ccCCCCcccccCCC
Q 004005 54 SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL-RGSLPWCM-ANMTSLRILDVSSNQ-LTGSISSSPLVHLT 130 (779)
Q Consensus 54 ~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~l~~~~l~~l~ 130 (779)
.|+.|.++++.- ++...+-....+++++++|++.+|.. ++..-..+ ..|++|++|++..|. ++...-......++
T Consensus 139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 677888877753 22334444456778888888887753 33222222 467888888887753 33111111234678
Q ss_pred CCCEEEccCccc-cCcCCcccccCCCCCcEEEccCCccceeeccccc-ccCCcccccEEecCCCCCCCCCC-chhhcCCC
Q 004005 131 SIEELMLSNNYF-QIPISLEPLFNYSRLKIFNAENNEIKAEITESHS-LIAPKFQLNTLSLSSNYGDGFIF-PKFLYHQH 207 (779)
Q Consensus 131 ~L~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~ 207 (779)
+|++|+++.+.- ++..-.....+++.++.+...+|.=.+ .+.+. .-..+..+.++++.++..+++.. ...-..+.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 888888887753 332111234556666666555442111 11111 11222245556654555554432 12223456
Q ss_pred CccEEEccCccC-cccCChhhhhcCCCCcEEEcCCCcC-cCCCCcCc-CCCCccCEEEccCCc
Q 004005 208 DLEYVDLSHIKM-NGEFPNWLLENNTKLETLFLVNDSL-AGPFRLPI-HSHKRLRQLDVSNNN 267 (779)
Q Consensus 208 ~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~n~ 267 (779)
.|+.++.+++.- ++.....+.+++++|+.|.+..|+- +......+ .+++.|+.+++.++.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 777777776643 3333334455677777777777752 22111122 244566666666654
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=7.4e-09 Score=102.57 Aligned_cols=289 Identities=19% Similarity=0.136 Sum_probs=168.6
Q ss_pred CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC-CCCCc
Q 004005 19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND-LRGSL 97 (779)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~-l~~~~ 97 (779)
..||.|.+.|+. .....-...+...++++++|++.+|.. +....+-..-..+++|++|+|..|. +++..
T Consensus 138 g~lk~LSlrG~r--------~v~~sslrt~~~~CpnIehL~l~gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 138 GFLKELSLRGCR--------AVGDSSLRTFASNCPNIEHLALYGCKK--ITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred cccccccccccc--------cCCcchhhHHhhhCCchhhhhhhccee--ccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 367888888887 122222233334889999999988863 2223333333568899999999863 44433
Q ss_pred ch-hhcCCCCCCEEEcCCCc-ccC-CCCcccccCCCCCCEEEccCccccC-cCCcccccCCCCCcEEEccCCc-cceeec
Q 004005 98 PW-CMANMTSLRILDVSSNQ-LTG-SISSSPLVHLTSIEELMLSNNYFQI-PISLEPLFNYSRLKIFNAENNE-IKAEIT 172 (779)
Q Consensus 98 ~~-~~~~l~~L~~L~L~~n~-l~~-~l~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~~~-l~~~~~ 172 (779)
-. -...|++|++|+++.|. +++ .+.. ..+++..++.+.+.+|.-.. ......-..+.-+.++++..+. ++++
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-- 284 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-- 284 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch--
Confidence 33 33578999999999874 333 2222 46677777777666653211 0000111334445666655654 2322
Q ss_pred ccccccCCcccccEEecCCCCCCCCCCchhh-cCCCCccEEEccCcc-CcccCChhhhhcCCCCcEEEcCCCcCcC--CC
Q 004005 173 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFL-YHQHDLEYVDLSHIK-MNGEFPNWLLENNTKLETLFLVNDSLAG--PF 248 (779)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~ 248 (779)
..+.....+..|+.++.++....+......+ .++++|+.+.+++|+ +++.....+..+++.|+.+++.++.... .+
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 2233344556889999866666555444444 567899999999996 5545555666789999999999886532 23
Q ss_pred CcCcCCCCccCEEEccCCcC-CCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhh
Q 004005 249 RLPIHSHKRLRQLDVSNNNI-RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 327 (779)
Q Consensus 249 ~~~~~~~~~L~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 327 (779)
...-..++.|+++.+++|.. ++..... ....-..+..|+.+.+++++...+-......
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~---------------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRH---------------------LSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhh---------------------hhhccccccccceeeecCCCCchHHHHHHHh
Confidence 33445678888888887743 2110000 0111223445566666666543232233334
Q ss_pred CCCCCCEEEccCcc
Q 004005 328 GCVNLQFLALSNNN 341 (779)
Q Consensus 328 ~~~~L~~L~l~~n~ 341 (779)
.+++|+.+++..++
T Consensus 424 ~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 424 ICRNLERIELIDCQ 437 (483)
T ss_pred hCcccceeeeechh
Confidence 46666666666553
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=7.2e-08 Score=91.21 Aligned_cols=209 Identities=19% Similarity=0.143 Sum_probs=119.0
Q ss_pred CCCCCCEEEccCCcCccccch-hhhhCCCCCCEEEccCcccCcc--CcccCCCCCCCCEEEccCCcCCccCCccc-cCCC
Q 004005 303 NMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQFLALSNNNLQGH--LFSRNFNLTNLQWLQLEGNRFVGEIPQSL-SKCS 378 (779)
Q Consensus 303 ~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 378 (779)
....++.+.+.++.|..+... .+...++.++++++.+|.+... +...+.++|.|+.|+++.|++...+. .+ ....
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCccccc
Confidence 334555666667766533322 3334567888888888888742 22344678888888888888774432 22 3566
Q ss_pred CCCEEEccCCCCCC-CcCccccCCCCCcEEEccCCcccCC--cCcccCCC-CCCcEEEccCCcCcc---CCCCccCcccc
Q 004005 379 SLEGLYLNNNSLLG-KIPRWLGNLTRLQYIIMPNNHLEGP--IPVEFCQL-DSLQILDISDNNISG---SLPSCFHPLSI 451 (779)
Q Consensus 379 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~l~~---~~~~~~~~~~L 451 (779)
+|++|-+.+..+.- .....+..++.++++.++.|..... ........ +.+.++....|...- ...-.-.++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 78888887765531 2234456677778887777743311 11111111 234444443332110 00000114566
Q ss_pred cEEEccCcccccccCcccccCCCCccEEeccCccCCCc-cCccccCCCCCCEEEccCCcccc
Q 004005 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS-IPDWVDGLSQLSHLILGHNNLEG 512 (779)
Q Consensus 452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~ 512 (779)
..+.+..|++...-....+...+.+..|+|+.++|... ..+++.+++.|..|.++++.+.+
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77777777665544444455566666777777776532 22456677777777777777653
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=5.6e-08 Score=90.70 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=115.7
Q ss_pred hHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC---CCCcc-------hhhcCCCCCCEEEcCCC
Q 004005 46 QIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL---RGSLP-------WCMANMTSLRILDVSSN 115 (779)
Q Consensus 46 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l---~~~~~-------~~~~~l~~L~~L~L~~n 115 (779)
+.+. .+..+..++||+|.|+.-....+...+.+-.+|++-+++.-.. .+.++ .++-+|++|+..+||.|
T Consensus 24 eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3344 5677777888888775555555666666667777777765421 22222 34567788888888888
Q ss_pred cccCCCCc---ccccCCCCCCEEEccCccccCcCCc-------------ccccCCCCCcEEEccCCccceeecccccccC
Q 004005 116 QLTGSISS---SPLVHLTSIEELMLSNNYFQIPISL-------------EPLFNYSRLKIFNAENNEIKAEITESHSLIA 179 (779)
Q Consensus 116 ~l~~~l~~---~~l~~l~~L~~L~l~~n~~~~~~~~-------------~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 179 (779)
.+....|. +.+++-+.|++|.+++|.+. ++.. .....-+.|+......|++.......+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a--- 178 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA--- 178 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH---
Confidence 77644443 13456677888888887653 1111 0112334555555555555433222211
Q ss_pred CcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhh----hhcCCCCcEEEcCCCcCcCC----CCcC
Q 004005 180 PKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL----LENNTKLETLFLVNDSLAGP----FRLP 251 (779)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~ 251 (779)
..+.....|+++.+..|.+.......+ ...+.+|+.|++++|-++.. ....
T Consensus 179 ---------------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 179 ---------------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred ---------------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 122223455566665555543211111 22455666666666655431 1223
Q ss_pred cCCCCccCEEEccCCcCCCCCCcccccc-----CCCCcEEECCCCCC
Q 004005 252 IHSHKRLRQLDVSNNNIRGHIPVKIGDV-----LPSLYVFNNSMNAL 293 (779)
Q Consensus 252 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~-----l~~L~~L~l~~n~~ 293 (779)
+...+.|++|.+.+|-++......+... .|+|..|...+|.+
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 3334456666666665553333322221 34555555555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=8.3e-08 Score=90.81 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=67.1
Q ss_pred CCCcEEeCCCcccCCCCCCcccccc-cCCCCCCEEeccCCCCCCC--cchhhcCCCCCCEEEcCCCcccCCCCcccc-cC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGL-CSLVHLQELYIASNDLRGS--LPWCMANMTSLRILDVSSNQLTGSISSSPL-VH 128 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l-~~l~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l-~~ 128 (779)
..++.|.+.++.|...+... .| ...+++++|||.+|.|++. +...+.+++.|++|+++.|++...|.. + ..
T Consensus 45 ra~ellvln~~~id~~gd~~---~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p 119 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVM---LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLP 119 (418)
T ss_pred cchhhheecCCCCCcchhHH---HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Cccc
Confidence 34456666666664432221 22 2456788888888877643 444567788888888888877643332 2 35
Q ss_pred CCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCc
Q 004005 129 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNE 166 (779)
Q Consensus 129 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~ 166 (779)
+.+|++|-+.+..+......+.+..++.++.|.++.|.
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 56777777777766543333456667777777777663
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=2.2e-08 Score=105.79 Aligned_cols=125 Identities=26% Similarity=0.171 Sum_probs=64.1
Q ss_pred CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (779)
+|...+.++|.+.. ....+.-++.|+.|+|++|+++... .+..+++|++||++.|.+.....-...++. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 34455555555542 2334444556666666666665432 455666666666666665532222222333 6666666
Q ss_pred CCcccCCcCcccCCCCCCcEEEccCCcCccCCC--CccCcccccEEEccCccc
Q 004005 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNML 461 (779)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~~ 461 (779)
+|.++.. ..+.++.+|+.||+++|-+.+... ..+.+..|+.|.+.||++
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6655532 234556666666666665543221 122244556666666654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=1.4e-08 Score=107.26 Aligned_cols=181 Identities=24% Similarity=0.231 Sum_probs=100.4
Q ss_pred CcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCC--C-------CcccCccccCCCCCCEEEccCCcCcc
Q 004005 249 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA--L-------DGSIPSSFGNMKFLQILDLSNNHLTG 319 (779)
Q Consensus 249 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~--~-------~~~~~~~~~~l~~L~~L~Ls~n~i~~ 319 (779)
|..+..+.+|++|.+.+|++.. ...+......|+.|-..+.- + .+.+..++ ....|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence 4455666777777777776652 11111111234444332210 0 01111111 1135666677777765
Q ss_pred ccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCcccc
Q 004005 320 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLG 399 (779)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 399 (779)
.+...+. -++.++.|+|++|+++.. +.+..+++|++|||++|.+..+.--...++. |+.|.+++|.++.. ..+.
T Consensus 178 ~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 4444332 367777777777777653 3566777777777777777744333334444 77777777776532 3456
Q ss_pred CCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCc
Q 004005 400 NLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 400 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 439 (779)
++.+|+.|++++|-+.+.-. ..+..+..|+.|++.+|.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 67777777777776654321 12345566777777777653
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=2.7e-07 Score=86.30 Aligned_cols=90 Identities=21% Similarity=0.154 Sum_probs=51.8
Q ss_pred CCccCEEEccCCcCCCCCCc----cccccCCCCcEEECCCCCCCcc----cCccccCCCCCCEEEccCCcCccccchhhh
Q 004005 255 HKRLRQLDVSNNNIRGHIPV----KIGDVLPSLYVFNNSMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHLA 326 (779)
Q Consensus 255 ~~~L~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 326 (779)
...|+++.+..|.|.-.... .-...+++|++|++.+|.++.. ...++...+.|+.|.+.+|-++......++
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 34566666666655411000 0011246777777777766532 233455667788888888877755554443
Q ss_pred h-----CCCCCCEEEccCcccCc
Q 004005 327 V-----GCVNLQFLALSNNNLQG 344 (779)
Q Consensus 327 ~-----~~~~L~~L~l~~n~l~~ 344 (779)
. ..|+|..|...+|.+.+
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhhhhcCCCccccccchhhhcC
Confidence 2 34677777777776553
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=1.7e-07 Score=78.19 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=50.1
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||.-+|.+. .+|-++-..+..-..++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 3566666666666 45555666677777777777666 45555555666666666666665 333222222223333445
Q ss_pred CCcCcccCCCC
Q 004005 680 YNNLSGEIPEW 690 (779)
Q Consensus 680 ~N~l~~~~p~~ 690 (779)
++++.+.+|..
T Consensus 155 nepl~~~~~~k 165 (177)
T KOG4579|consen 155 NEPLGDETKKK 165 (177)
T ss_pred CCcccccCccc
Confidence 55666555543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=2.1e-06 Score=95.97 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=108.2
Q ss_pred CCCcEEeCCCcccCCCCCCccccccc-CCCCCCEEeccCCCCCCC-cchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGS-LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~ 130 (779)
.+|++||+++...- ...-|..++ .+|.|+.|.+.+-.+... ......++++|..||+|+++++ .+. .+++++
T Consensus 122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK 195 (699)
T ss_pred HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence 58999999886531 233344444 479999999988766433 3445678899999999999987 564 589999
Q ss_pred CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005 131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE 210 (779)
Q Consensus 131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 210 (779)
+|+.|.+.+-.+........+.++++|+.||+|........ .+....+ +.-..+|+|+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~qYl-----------ec~~~LpeLr 253 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIEQYL-----------ECGMVLPELR 253 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHHHHH-----------HhcccCcccc
Confidence 99999988887775455557788899999998876544321 0111111 1122367889
Q ss_pred EEEccCccCcccCChhhhhcCCCCcEEEcC
Q 004005 211 YVDLSHIKMNGEFPNWLLENNTKLETLFLV 240 (779)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (779)
.||.+++.+.+.+-+.+...-++|+.+..-
T Consensus 254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 254 FLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred EEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 999988887766666555555556554443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.6e-05 Score=71.55 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=83.0
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCccc--CCCCcccccC
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT--GSISSSPLVH 128 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~l~~~~l~~ 128 (779)
-......+||++|++ ..++ .|..++.|.+|.|++|+|+...|.--.-+++|+.|.|.+|.+. |.+.. +..
T Consensus 40 ~~d~~d~iDLtdNdl-----~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~ 111 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDL-----RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LAS 111 (233)
T ss_pred cccccceecccccch-----hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hcc
Confidence 445778889999988 2332 4557889999999999998777776667788999999998876 23433 778
Q ss_pred CCCCCEEEccCccccC--cCCcccccCCCCCcEEEccCCccce
Q 004005 129 LTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKA 169 (779)
Q Consensus 129 l~~L~~L~l~~n~~~~--~~~~~~l~~l~~L~~L~l~~~~l~~ 169 (779)
|++|++|.+-+|.++. ......+..+++|+.||+.+....+
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 8899999999888763 2333456788888888888765543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.3e-05 Score=54.32 Aligned_cols=36 Identities=31% Similarity=0.576 Sum_probs=17.7
Q ss_pred CCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCccc
Q 004005 82 HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT 118 (779)
Q Consensus 82 ~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~ 118 (779)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=6.2e-05 Score=67.88 Aligned_cols=131 Identities=22% Similarity=0.305 Sum_probs=93.4
Q ss_pred CcEEeCCCcccCCCCCCccccccc-CCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCC
Q 004005 55 LKYLSLSYYTLGTNSSGTLDQGLC-SLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133 (779)
Q Consensus 55 L~~L~Ls~~~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~ 133 (779)
=+.++|++.++..++. ++ -+.....+||++|.+... ..|..++.|++|.+++|+++ .|.+..-..+++|+
T Consensus 21 e~e~~LR~lkip~ien------lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN------LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK 91 (233)
T ss_pred ccccccccccccchhh------ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence 4566676666522111 22 245788999999988643 46788999999999999998 66663444678899
Q ss_pred EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD 213 (779)
Q Consensus 134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 213 (779)
.|.+.+|.+........+..+++|++|.+-+|.+..... + -...+..+++|+.||
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~--------------------Y-----R~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN--------------------Y-----RLYVLYKLPSLRTLD 146 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchhcccC--------------------c-----eeEEEEecCcceEee
Confidence 999999999865666778999999999999988765321 0 012345667888888
Q ss_pred ccCccC
Q 004005 214 LSHIKM 219 (779)
Q Consensus 214 l~~~~~ 219 (779)
..+-..
T Consensus 147 F~kVt~ 152 (233)
T KOG1644|consen 147 FQKVTR 152 (233)
T ss_pred hhhhhH
Confidence 776543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.7e-05 Score=52.04 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=30.0
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRG 95 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~ 95 (779)
++|++|++++|++ ..+|..+++|++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i-----~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQI-----TDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCC-----cccCchHhCCCCCCEEEecCCCCCC
Confidence 4788999999988 5677678899999999999998874
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=0.00011 Score=64.78 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=43.9
Q ss_pred cccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCC
Q 004005 300 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS 379 (779)
Q Consensus 300 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 379 (779)
+|.++++|+.+.+.. .+. .++...+.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 345555555555543 233 444444555555555555443 4444444455555555555543 233233344555555
Q ss_pred CCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCC
Q 004005 380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 428 (779)
Q Consensus 380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 428 (779)
++.+++..+ +.......|.+. +++.+.+.. .+..+....|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 332333444444 555555543 2222333444444443
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=5.3e-06 Score=69.54 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=77.9
Q ss_pred CcceEEccCCcccccCcccc-cCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005 600 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 678 (779)
.|+..+|++|.+.. .|..| ...+..+.|++++|.|+ ..|..++.++.|+.|++++|++. ..|..+..+.++..||.
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 57888999999984 55555 44568899999999999 56777999999999999999997 67777777889999999
Q ss_pred cCCcCcccCCCCccccccCCcc-cccCCCCCCCC
Q 004005 679 AYNNLSGEIPEWKAQFATFNES-SYEGNTFLCGL 711 (779)
Q Consensus 679 ~~N~l~~~~p~~~~~~~~~~~~-~~~~n~~~c~~ 711 (779)
.+|.+- .+|.. .-+.+...+ .+..+||--+|
T Consensus 131 ~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 131 PENARA-EIDVD-LFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred CCCccc-cCcHH-HhccccHHHHHhcCCcccccC
Confidence 888876 44432 223333332 23445554444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00019 Score=73.94 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=24.4
Q ss_pred ccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCC
Q 004005 449 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 508 (779)
Q Consensus 449 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 508 (779)
..++.|++++|.+. .+|. + .++|+.|.+++|.-....|+.+. ++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 44555666555442 2231 1 13455555555433333443331 35555555555
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.00019 Score=63.19 Aligned_cols=123 Identities=21% Similarity=0.228 Sum_probs=54.6
Q ss_pred cccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCC
Q 004005 275 KIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT 354 (779)
Q Consensus 275 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 354 (779)
..+..+++|+.+.+.. .+......+|..+++|+.+.+..+ +. .++...+.++++++.+.+.. .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 3333344555555543 333344555666666777777664 44 56666666666677777754 44444555666677
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCC
Q 004005 355 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 404 (779)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 404 (779)
+|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777654 444445566666 777777665 3343445566666555
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=5e-05 Score=85.23 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccC
Q 004005 206 QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN 265 (779)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 265 (779)
+|.|+.|.+++-.+...--..++.++|+|..||++++.++.. ..++.+++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence 445555555444332211122234445555555555444432 2334444444444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00016 Score=68.43 Aligned_cols=84 Identities=24% Similarity=0.342 Sum_probs=39.1
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCC--CCCCCcchhhcCCCCCCEEEcCCCccc--CCCCcccc
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASN--DLRGSLPWCMANMTSLRILDVSSNQLT--GSISSSPL 126 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~--~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~l~~~~l 126 (779)
.+..|+.|++.+..+++. ..+| .|++|++|.++.| ++.+.++.....+++|++|++++|++. .+++. +
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--L 112 (260)
T ss_pred cccchhhhhhhccceeec--ccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--h
Confidence 334555555555444221 2222 4555555555555 444444444444455555555555544 12222 3
Q ss_pred cCCCCCCEEEccCccc
Q 004005 127 VHLTSIEELMLSNNYF 142 (779)
Q Consensus 127 ~~l~~L~~L~l~~n~~ 142 (779)
.++.+|..|++.+|..
T Consensus 113 ~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSV 128 (260)
T ss_pred hhhcchhhhhcccCCc
Confidence 4444455555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00013 Score=69.00 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=64.7
Q ss_pred ccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCC--cccCCCCcccccCCCCCCEEEccCccccCcCCcccccCC
Q 004005 77 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNY 154 (779)
Q Consensus 77 l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l 154 (779)
.-.+..|+.|.+.+..++.. ..|-.+++|+.|+++.| .+.+.++. ...++++|++|++++|++...-....+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhh
Confidence 34556777777777776533 34567788899999888 55556665 566778899999999888754445567777
Q ss_pred CCCcEEEccCCccce
Q 004005 155 SRLKIFNAENNEIKA 169 (779)
Q Consensus 155 ~~L~~L~l~~~~l~~ 169 (779)
.+|..|++..|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 888888888877654
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.003 Score=65.37 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=58.8
Q ss_pred cCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCE
Q 004005 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 309 (779)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 309 (779)
.+.+++.|++++|.+... | .-.++|++|.+++|.-...+|..+ .++|+.|++++|.....+|. +|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccce
Confidence 345556666665544422 1 112346666666543222444322 13566666666522222332 3555
Q ss_pred EEccCCcCccccchhhhhCCCCCCEEEccCcccC-c-cCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 004005 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ-G-HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 387 (779)
Q Consensus 310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 387 (779)
|+++.+... .++ .-.++|+.|.+.+++.. . ..+.. -.++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-ccc----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 555544332 111 01234555555332210 0 00000 1145666666666544 2333332 3566666554
Q ss_pred C
Q 004005 388 N 388 (779)
Q Consensus 388 n 388 (779)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.02 E-value=0.00011 Score=81.70 Aligned_cols=193 Identities=23% Similarity=0.156 Sum_probs=84.0
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCC-CCCCC----cchhhcCCCCCCEEEcCCCc-ccCCCCcc
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASN-DLRGS----LPWCMANMTSLRILDVSSNQ-LTGSISSS 124 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~l~~~ 124 (779)
.++.|+.|.+.++.- +....+-.....+++|+.|+++++ ..... .......+++|+.|+++++. ++ ..--.
T Consensus 186 ~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLS 262 (482)
T ss_pred hCchhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHH
Confidence 455566666555432 000112233445566666666552 11111 11233445666666666555 33 11111
Q ss_pred ccc-CCCCCCEEEccCcc-ccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchh
Q 004005 125 PLV-HLTSIEELMLSNNY-FQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKF 202 (779)
Q Consensus 125 ~l~-~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 202 (779)
.+. .+++|++|.+.++. ++..........++.|++|+++++....... .......+++++.|.+...
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-l~~~~~~c~~l~~l~~~~~---------- 331 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-LEALLKNCPNLRELKLLSL---------- 331 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-HHHHHHhCcchhhhhhhhc----------
Confidence 122 25666666655554 3332222333455666666666555431110 0001122334444443111
Q ss_pred hcCCCCccEEEccCccCcc--cCChhhhhcCCCCcEEEcCCCcCcCCC-CcCcCCCCcc
Q 004005 203 LYHQHDLEYVDLSHIKMNG--EFPNWLLENNTKLETLFLVNDSLAGPF-RLPIHSHKRL 258 (779)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 258 (779)
..+..++.+.+.++.... .........+++++.+.+..+...... ...+..++.|
T Consensus 332 -~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 332 -NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred -CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 113445555555443221 333444566777777777666633222 2334445544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=7.1e-05 Score=70.76 Aligned_cols=100 Identities=27% Similarity=0.327 Sum_probs=61.1
Q ss_pred CCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCC-
Q 004005 18 FKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS- 96 (779)
Q Consensus 18 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~- 96 (779)
+.+.+.|+..||. +.+. .+.+.|+.|++|.||-|.| +.+ +.+..+++|++|.|..|.|.+.
T Consensus 18 l~~vkKLNcwg~~---------L~DI---sic~kMp~lEVLsLSvNkI-----ssL-~pl~rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---------LDDI---SICEKMPLLEVLSLSVNKI-----SSL-APLQRCTRLKELYLRKNCIESLD 79 (388)
T ss_pred HHHhhhhcccCCC---------ccHH---HHHHhcccceeEEeecccc-----ccc-hhHHHHHHHHHHHHHhcccccHH
Confidence 4566677777777 4432 1223777888888888877 333 2466778888888888777643
Q ss_pred cchhhcCCCCCCEEEcCCCcccCCCCc----ccccCCCCCCEE
Q 004005 97 LPWCMANMTSLRILDVSSNQLTGSISS----SPLVHLTSIEEL 135 (779)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~l~~----~~l~~l~~L~~L 135 (779)
.-.++.++++|+.|.|..|.-.|.-+. ..++-+++|+.|
T Consensus 80 EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 80 ELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred HHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 224567777777777777665543222 134445555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.00012 Score=81.30 Aligned_cols=35 Identities=29% Similarity=0.179 Sum_probs=15.9
Q ss_pred ccEEeccCccCCCc-cCccccC-CCCCCEEEccCCcc
Q 004005 476 LVTLDLSYNRLNGS-IPDWVDG-LSQLSHLILGHNNL 510 (779)
Q Consensus 476 L~~L~L~~n~i~~~-~~~~~~~-l~~L~~L~L~~n~l 510 (779)
++.|+++.+..... .-..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 56666666543311 1111111 45556666666544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00018 Score=68.08 Aligned_cols=83 Identities=22% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCc-ccccCCC
Q 004005 52 MPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHLT 130 (779)
Q Consensus 52 l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~-~~l~~l~ 130 (779)
+.+.+.|++=+|.++++. ...+|+.|++|.|+-|+|+.. ..+..|++|++|.|..|.|. .+.+ .-+.+++
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 346667777777764431 234677777777777777644 23666777777777776665 2322 1245666
Q ss_pred CCCEEEccCcccc
Q 004005 131 SIEELMLSNNYFQ 143 (779)
Q Consensus 131 ~L~~L~l~~n~~~ 143 (779)
+|+.|-|..|...
T Consensus 89 sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 SLRTLWLDENPCC 101 (388)
T ss_pred hhhhHhhccCCcc
Confidence 6666666666544
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.47 E-value=0.00034 Score=75.15 Aligned_cols=113 Identities=24% Similarity=0.212 Sum_probs=58.6
Q ss_pred CcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchh----hcCC-CCCCEEEcCCCcccC----CCCccc
Q 004005 55 LKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWC----MANM-TSLRILDVSSNQLTG----SISSSP 125 (779)
Q Consensus 55 L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~----~l~~~~ 125 (779)
+..|.|.+|.+.+.+...+..++...++|+.|++++|.+.+..... +... ..|++|++..|.+++ .+.. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence 5566666666655555555566666666666666666665332221 2222 345555665555542 1222 3
Q ss_pred ccCCCCCCEEEccCccccCc---CCccc----ccCCCCCcEEEccCCccc
Q 004005 126 LVHLTSIEELMLSNNYFQIP---ISLEP----LFNYSRLKIFNAENNEIK 168 (779)
Q Consensus 126 l~~l~~L~~L~l~~n~~~~~---~~~~~----l~~l~~L~~L~l~~~~l~ 168 (779)
+.....++.++++.|.+... ..... +....++++|.+.+|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 44456666666666655310 00011 223556777777777665
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.08 E-value=0.00029 Score=75.68 Aligned_cols=194 Identities=21% Similarity=0.143 Sum_probs=102.7
Q ss_pred CCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccCCCCc---ccccCC-CCCCEEEccCccccCcCC---ccc
Q 004005 82 HLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTGSISS---SPLVHL-TSIEELMLSNNYFQIPIS---LEP 150 (779)
Q Consensus 82 ~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~---~~l~~l-~~L~~L~l~~n~~~~~~~---~~~ 150 (779)
.+++|.|.+|.+.+. +...+..+..|+.|++++|.+.+.--. ..+... ..|++|++..|.++.... ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 388899999988654 344667888999999999988632111 022332 456778888887764221 123
Q ss_pred ccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhh---
Q 004005 151 LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWL--- 227 (779)
Q Consensus 151 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--- 227 (779)
+.....++.++++.|.+.......... . ++..+....++++|.+++|.++......+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-----~---------------l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQ-----A---------------LESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhh-----h---------------hhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 445667777888877765221111000 0 00011223445555555555442111111
Q ss_pred hhcCCC-CcEEEcCCCcCcCC----CCcCcCCC-CccCEEEccCCcCCCCCCccccc---cCCCCcEEECCCCCCCc
Q 004005 228 LENNTK-LETLFLVNDSLAGP----FRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGD---VLPSLYVFNNSMNALDG 295 (779)
Q Consensus 228 ~~~~~~-L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~---~l~~L~~L~l~~n~~~~ 295 (779)
++..+. +..+++..|.+.+. ....+..+ +.+++++++.|.+++........ .++.++.+.++.|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 122222 44456666555432 11223333 56677777777776443333222 13467777777777653
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.89 E-value=0.021 Score=31.89 Aligned_cols=9 Identities=67% Similarity=0.649 Sum_probs=3.3
Q ss_pred eEEccCCcc
Q 004005 603 GLDLSCNKL 611 (779)
Q Consensus 603 ~L~Ls~n~l 611 (779)
+||+++|++
T Consensus 4 ~Ldls~n~l 12 (22)
T PF00560_consen 4 YLDLSGNNL 12 (22)
T ss_dssp EEEETSSEE
T ss_pred EEECCCCcC
Confidence 333333333
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.66 E-value=0.083 Score=66.69 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=52.5
Q ss_pred ECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 653 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQD 732 (779)
Q Consensus 653 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~ 732 (779)
||++|+|+.+.+..|..+++|+.|+|++|+|.|.|.- .++..|... .+...-......|..|...+++++.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L--~WL~~WL~~---~~v~v~~~~~i~CasP~~LrG~~L~~l~~ 75 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL--ARLPRWAEE---KGVKVRQPEAALCAGPGALAGQPLLGIPL 75 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc--HHHHHHHHh---cCccccCCcccCCCCChHHCCCCcccCCc
Confidence 6889999988888899999999999999999999874 233322211 11111111112499999888888877665
Q ss_pred CC
Q 004005 733 DN 734 (779)
Q Consensus 733 ~~ 734 (779)
.+
T Consensus 76 ~d 77 (2740)
T TIGR00864 76 LD 77 (2740)
T ss_pred cc
Confidence 54
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.33 E-value=0.0049 Score=57.14 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=61.7
Q ss_pred HHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccc
Q 004005 47 IISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 126 (779)
Q Consensus 47 ~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l 126 (779)
.+. .+++.++||++.+++ ..+-.-++.++.|..|+++.|.+. ..|..++.+..+++++++.|+.+ ..|. ++
T Consensus 37 ei~-~~kr~tvld~~s~r~-----vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~ 107 (326)
T KOG0473|consen 37 EIA-SFKRVTVLDLSSNRL-----VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQ 107 (326)
T ss_pred hhh-ccceeeeehhhhhHH-----HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cc
Confidence 344 666777777777776 334445666777777777777765 56777777777777777777776 6676 67
Q ss_pred cCCCCCCEEEccCcccc
Q 004005 127 VHLTSIEELMLSNNYFQ 143 (779)
Q Consensus 127 ~~l~~L~~L~l~~n~~~ 143 (779)
++.+.+++++..+|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 77788877777777653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.91 E-value=0.11 Score=26.87 Aligned_cols=12 Identities=58% Similarity=0.886 Sum_probs=4.1
Q ss_pred CCCEEEcCCCcc
Q 004005 106 SLRILDVSSNQL 117 (779)
Q Consensus 106 ~L~~L~L~~n~l 117 (779)
+|++|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.62 E-value=0.006 Score=56.54 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=61.5
Q ss_pred eecCCCCCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEe
Q 004005 8 GVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELY 87 (779)
Q Consensus 8 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~ 87 (779)
.++|..++..++..+.||++.+. +. .....++ .+..+..||++.+.+ .-+|+.+.....+++++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r---------~v-n~~~n~s-~~t~~~rl~~sknq~-----~~~~~d~~q~~e~~~~~ 94 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNR---------LV-NLGKNFS-ILTRLVRLDLSKNQI-----KFLPKDAKQQRETVNAA 94 (326)
T ss_pred cccchhhhhccceeeeehhhhhH---------HH-hhccchH-HHHHHHHHhccHhhH-----hhChhhHHHHHHHHHHH
Confidence 44555566777777777777776 22 1222333 455667777777766 56677777777777777
Q ss_pred ccCCCCCCCcchhhcCCCCCCEEEcCCCccc
Q 004005 88 IASNDLRGSLPWCMANMTSLRILDVSSNQLT 118 (779)
Q Consensus 88 L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~ 118 (779)
+.+|..+ ..|.+++..++++++++-++.+.
T Consensus 95 ~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 95 SHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhccchh-hCCccccccCCcchhhhccCcch
Confidence 7776655 56777777777777777776654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.30 E-value=0.27 Score=28.68 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=6.0
Q ss_pred CCCEEECCCCcCC
Q 004005 648 HVESLDLSNNKLN 660 (779)
Q Consensus 648 ~L~~L~L~~N~l~ 660 (779)
+|++|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.30 E-value=0.27 Score=28.68 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=6.0
Q ss_pred CCCEEECCCCcCC
Q 004005 648 HVESLDLSNNKLN 660 (779)
Q Consensus 648 ~L~~L~L~~N~l~ 660 (779)
+|++|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.24 E-value=0.35 Score=28.23 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=7.3
Q ss_pred CCCCEEECcccccc
Q 004005 623 TRIQTLNLSHNNLT 636 (779)
Q Consensus 623 ~~L~~L~Ls~n~l~ 636 (779)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.24 E-value=0.35 Score=28.23 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=7.3
Q ss_pred CCCCEEECcccccc
Q 004005 623 TRIQTLNLSHNNLT 636 (779)
Q Consensus 623 ~~L~~L~Ls~n~l~ 636 (779)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=0.077 Score=48.58 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=14.4
Q ss_pred CCCCEEEcCCCc-ccCCCCcccccCCCCCCEEEccC
Q 004005 105 TSLRILDVSSNQ-LTGSISSSPLVHLTSIEELMLSN 139 (779)
Q Consensus 105 ~~L~~L~L~~n~-l~~~l~~~~l~~l~~L~~L~l~~ 139 (779)
++|+.|++++|. |+. -.-..+.++++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~-~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITD-GGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeech-hHHHHHHHhhhhHHHHhcC
Confidence 455555555442 221 1111344455555554444
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.46 E-value=2.9 Score=43.74 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=20.1
Q ss_pred CCCEEEcCCCcccCCCCcccccC---CCCCCEEEccCcccc
Q 004005 106 SLRILDVSSNQLTGSISSSPLVH---LTSIEELMLSNNYFQ 143 (779)
Q Consensus 106 ~L~~L~L~~n~l~~~l~~~~l~~---l~~L~~L~l~~n~~~ 143 (779)
.+.+++++.|...+.+|. .+.. -.-+++++.+...++
T Consensus 215 ~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgir 254 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIR 254 (553)
T ss_pred cccccccccCCCCccchh-HHHHhhhhhhhhcccccccccc
Confidence 566677777766656665 2221 223555666555444
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=0.044 Score=50.12 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=20.6
Q ss_pred CCCCcEEECCCC-CCCcccCccccCCCCCCEEEccCCc
Q 004005 280 LPSLYVFNNSMN-ALDGSIPSSFGNMKFLQILDLSNNH 316 (779)
Q Consensus 280 l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~Ls~n~ 316 (779)
.++|+.|++++| +|+...-..+..+++|+.|.+.+-+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 456666666655 3444444445566666666665543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.03 E-value=0.13 Score=29.45 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=4.8
Q ss_pred CCCEEeccCCCCC
Q 004005 82 HLQELYIASNDLR 94 (779)
Q Consensus 82 ~L~~L~L~~~~l~ 94 (779)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.10 E-value=0.31 Score=29.10 Aligned_cols=14 Identities=50% Similarity=0.591 Sum_probs=7.1
Q ss_pred CCcEEeCCCcccCC
Q 004005 54 SLKYLSLSYYTLGT 67 (779)
Q Consensus 54 ~L~~L~Ls~~~l~~ 67 (779)
+|++|||++|.+++
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555533
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=76.19 E-value=2.5 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=13.3
Q ss_pred eeeeehhhhHHHHHHHHHHhhhhcccce
Q 004005 741 FFITFTTSYVIVIFGIVIVLYVNSYWRR 768 (779)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (779)
..+.+++..-+++++++..+.++.||||
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEec
Confidence 3444444444444444444444555554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.10 E-value=12 Score=39.32 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=8.5
Q ss_pred CCCccCEEEccCCcCC
Q 004005 254 SHKRLRQLDVSNNNIR 269 (779)
Q Consensus 254 ~~~~L~~L~l~~n~i~ 269 (779)
.-+.+.+|++++|...
T Consensus 438 stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 438 STQTLAKLDISGNGMG 453 (553)
T ss_pred cCcccccccccCCCcc
Confidence 3345556666665443
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.23 E-value=1.4 Score=56.46 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.3
Q ss_pred eccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005 677 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714 (779)
Q Consensus 677 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 714 (779)
||++|+|+...+..|..+.++..+.+.+|||.|+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 68999999887788888889999999999999999874
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.37 E-value=3.2 Score=24.24 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=8.2
Q ss_pred CCCCEEECCCCcCC
Q 004005 647 KHVESLDLSNNKLN 660 (779)
Q Consensus 647 ~~L~~L~L~~N~l~ 660 (779)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666664
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.61 E-value=5.9 Score=23.09 Aligned_cols=18 Identities=56% Similarity=0.696 Sum_probs=11.9
Q ss_pred CCCCEEEcCCCcccCCCCc
Q 004005 105 TSLRILDVSSNQLTGSISS 123 (779)
Q Consensus 105 ~~L~~L~L~~n~l~~~l~~ 123 (779)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777766 5665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.69 E-value=5.5 Score=42.77 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=35.7
Q ss_pred cccCcceEEccCCcccccCc--ccccCCCCCCEEECccc--ccccCCC-CCCCCCCCCCEEECCCCcCCC
Q 004005 597 VLSLLSGLDLSCNKLIGHIP--PQIGNLTRIQTLNLSHN--NLTGSIP-STFSNLKHVESLDLSNNKLNG 661 (779)
Q Consensus 597 ~~~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 661 (779)
..+.+..+.|++|++..... ..-...++|+.|+|++| .+..... ..+++ ..|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 34567778888887763211 11233467788888887 3331111 11222 347777777777753
No 93
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=53.09 E-value=9.4 Score=24.44 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHhhhhcccce
Q 004005 749 YVIVIFGIVIVLYVNSYWRR 768 (779)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~ 768 (779)
.+++++++.++.|.+++++.
T Consensus 14 vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 14 VGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 33333444444555555443
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=46.60 E-value=13 Score=30.09 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHhh
Q 004005 747 TSYVIVIFGIVIVLY 761 (779)
Q Consensus 747 ~~~~~~~~~~~~~~~ 761 (779)
++.++++.+++.++.
T Consensus 73 vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 73 VAVVAVVGGLVGFLC 87 (96)
T ss_pred eehhhHHHHHHHHHh
Confidence 333333333333433
No 95
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=45.20 E-value=14 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHhhhhcccceeEEEEEeee
Q 004005 746 TTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMW 777 (779)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (779)
++++.+++++...++++++|.||+..-+-++.
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCchhhcc
Confidence 34444445555666777778777766544443
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.58 E-value=11 Score=31.99 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=5.9
Q ss_pred hhhhHHHHHHHHHHhh
Q 004005 746 TTSYVIVIFGIVIVLY 761 (779)
Q Consensus 746 ~~~~~~~~~~~~~~~~ 761 (779)
+++++++++.++++++
T Consensus 70 i~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 70 IFGVMAGVIGIILLIS 85 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=37.26 E-value=22 Score=31.06 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=3.9
Q ss_pred HHHHhhhhccc
Q 004005 756 IVIVLYVNSYW 766 (779)
Q Consensus 756 ~~~~~~~~~~~ 766 (779)
++++++++++|
T Consensus 75 vV~lv~~~kRk 85 (146)
T PF15102_consen 75 VVCLVIYYKRK 85 (146)
T ss_pred HHHheeEEeec
Confidence 33333333333
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.30 E-value=25 Score=20.29 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=6.5
Q ss_pred CCCCEEEcCCCc
Q 004005 105 TSLRILDVSSNQ 116 (779)
Q Consensus 105 ~~L~~L~L~~n~ 116 (779)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=36.05 E-value=21 Score=31.41 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=5.3
Q ss_pred eeeeehhhhHH
Q 004005 741 FFITFTTSYVI 751 (779)
Q Consensus 741 ~~~~~~~~~~~ 751 (779)
.+|++++++.+
T Consensus 50 IVIGvVVGVGg 60 (154)
T PF04478_consen 50 IVIGVVVGVGG 60 (154)
T ss_pred EEEEEEecccH
Confidence 44555554433
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.79 E-value=21 Score=38.55 Aligned_cols=61 Identities=28% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCCCCEEeccCCCCCCC--cchhhcCCCCCCEEEcCCC--cccCCCCcccccC--CCCCCEEEccCcccc
Q 004005 80 LVHLQELYIASNDLRGS--LPWCMANMTSLRILDVSSN--QLTGSISSSPLVH--LTSIEELMLSNNYFQ 143 (779)
Q Consensus 80 l~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~L~~n--~l~~~l~~~~l~~--l~~L~~L~l~~n~~~ 143 (779)
.+.+..++|++|++... +...-..-++|.+|+|++| .+. ..+ .+.+ ...|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~--el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SES--ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chh--hhhhhcCCCHHHeeecCCccc
Confidence 44555555666655322 1111123366666666666 222 111 1222 234666777777665
No 101
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.07 E-value=16 Score=36.76 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHhhhhcccceeE
Q 004005 746 TTSYVIVIFGIVIVLYVNSYWRRRW 770 (779)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (779)
++.++++|++|+++.++.||+|++.
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444455555555555443
No 102
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.56 E-value=26 Score=34.33 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHhhhhccccee
Q 004005 749 YVIVIFGIVIVLYVNSYWRRR 769 (779)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~ 769 (779)
+.++++++++++|++.++||+
T Consensus 267 vllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 267 VLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333344445555555555443
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=30.53 E-value=33 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhcccc
Q 004005 750 VIVIFGIVIVLYVNSYWR 767 (779)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~ 767 (779)
++++.+++.++|.+++-|
T Consensus 19 lv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 19 LVGIGIVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555444433
No 104
>PTZ00370 STEVOR; Provisional
Probab=30.30 E-value=26 Score=34.35 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHhhhhccccee
Q 004005 748 SYVIVIFGIVIVLYVNSYWRRR 769 (779)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~ 769 (779)
.+.++++++++++|++.++||+
T Consensus 262 lvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344445555555555543
No 105
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.66 E-value=64 Score=30.27 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=10.9
Q ss_pred eeeeeehhhhHHHHHHHHHHhhh
Q 004005 740 SFFITFTTSYVIVIFGIVIVLYV 762 (779)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~ 762 (779)
.+++++++++++++++|++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHH
Confidence 34445555555555444444443
No 106
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.72 E-value=45 Score=34.11 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhcccceeEEE
Q 004005 751 IVIFGIVIVLYVNSYWRRRWFY 772 (779)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~ 772 (779)
++++++++++|+..++|.+..|
T Consensus 282 a~lvlivLiaYli~Rrr~~~gY 303 (306)
T PF01299_consen 282 AGLVLIVLIAYLIGRRRSRAGY 303 (306)
T ss_pred HHHHHHHHHhheeEeccccccc
Confidence 3344455556666666555544
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=20.57 E-value=50 Score=27.87 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccceeEE
Q 004005 753 IFGIVIVLYVNSYWRRRWF 771 (779)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~ 771 (779)
+.++++++|+++.+||..|
T Consensus 92 l~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 92 LALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhhhhccccC
Confidence 3444556666666666655
Done!