Query 004005
Match_columns 779
No_of_seqs 507 out of 4956
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 11:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-73 6.8E-78 662.5 45.6 690 4-725 40-757 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.6E-67 2.6E-71 607.2 39.5 604 1-688 57-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-60 2.7E-64 544.4 49.7 638 22-737 7-672 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5E-58 1.7E-62 529.4 52.9 573 19-664 25-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 9.9E-56 3.4E-60 519.2 42.6 567 53-735 24-607 (844)
6 3t6q_A CD180 antigen; protein- 100.0 8.5E-54 2.9E-58 487.4 40.4 558 53-731 33-602 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.6E-52 1.6E-56 473.1 41.2 518 19-664 33-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-52 1.8E-56 472.5 38.3 553 53-734 32-603 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-50 3.7E-55 476.4 46.3 540 56-714 7-566 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-50 1.5E-54 456.9 39.6 534 54-714 12-564 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 2.4E-46 8.1E-51 423.3 37.7 515 55-689 9-536 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 7.6E-45 2.6E-49 408.6 33.9 485 54-689 6-515 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2.5E-44 8.7E-49 406.6 35.0 465 183-713 29-536 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-42 4E-47 399.0 40.5 560 20-731 53-622 (635)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-43 1.5E-47 394.3 32.9 466 19-539 26-514 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 5.2E-44 1.8E-48 398.6 24.4 463 56-689 3-486 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 5E-42 1.7E-46 393.7 39.7 279 375-714 303-586 (635)
18 4eco_A Uncharacterized protein 100.0 2.6E-44 8.8E-49 408.0 20.2 371 241-689 192-605 (636)
19 4eco_A Uncharacterized protein 100.0 7.2E-44 2.5E-48 404.3 18.7 444 208-711 82-603 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 4.2E-42 1.4E-46 394.9 30.9 441 207-712 323-870 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 1.1E-41 3.8E-46 391.4 27.6 350 248-685 481-865 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-42 1.8E-46 382.3 23.2 440 19-538 21-484 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-41 1.3E-45 378.4 25.7 465 52-689 30-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 4.5E-39 1.5E-43 352.6 31.0 371 260-689 14-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-39 2.7E-43 359.5 23.8 464 17-539 29-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.6E-42 341.7 29.0 383 210-664 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.8E-37 1.3E-41 333.4 26.0 220 256-536 111-331 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 8E-36 2.7E-40 328.5 26.9 345 284-711 14-359 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 2.3E-35 7.9E-40 319.4 29.3 403 183-710 12-431 (454)
30 1o6v_A Internalin A; bacterial 100.0 4.5E-34 1.5E-38 312.7 33.4 347 230-686 44-390 (466)
31 3o6n_A APL1; leucine-rich repe 100.0 2.1E-34 7E-39 308.2 27.3 335 304-712 44-378 (390)
32 2id5_A Lingo-1, leucine rich r 100.0 2.3E-34 7.9E-39 316.8 27.9 348 260-690 15-362 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.6E-33 5.5E-38 308.4 33.8 346 205-661 44-389 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3E-34 1E-38 311.0 26.4 363 196-690 31-393 (457)
35 3oja_B Anopheles plasmodium-re 100.0 1.9E-33 6.5E-38 317.2 27.3 335 304-712 50-384 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 8.2E-32 2.8E-36 291.9 30.3 354 51-493 40-393 (457)
37 4fmz_A Internalin; leucine ric 100.0 1.9E-31 6.5E-36 280.7 28.1 304 280-684 43-346 (347)
38 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-32 8E-37 281.8 18.9 260 378-717 50-313 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 1.2E-31 4E-36 286.8 24.9 313 329-713 44-357 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.1E-30 3.6E-35 275.0 30.1 308 251-660 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 6.8E-31 2.3E-35 296.4 25.0 312 329-712 50-362 (597)
42 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5.2E-34 263.8 29.0 291 306-682 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 9.6E-30 3.3E-34 265.4 26.9 290 306-682 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 5.7E-29 1.9E-33 259.5 27.6 267 379-705 53-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 6.3E-29 2.2E-33 259.2 27.3 251 257-544 34-286 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-30 5.5E-35 268.0 14.5 255 354-688 50-308 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 8.2E-33 2.8E-37 303.5 -6.5 209 207-415 3-240 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 8.4E-33 2.9E-37 303.4 -6.5 280 256-535 3-326 (461)
49 3zyj_A Leucine-rich repeat-con 100.0 1.5E-27 5E-32 259.0 26.7 289 357-733 46-335 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.3E-32 260.5 25.1 233 378-689 75-308 (452)
51 2z80_A TOLL-like receptor 2, v 100.0 7.8E-28 2.7E-32 253.3 18.7 209 304-540 30-240 (353)
52 2z66_A Variable lymphocyte rec 100.0 8.6E-28 3E-32 247.7 18.5 201 470-730 97-302 (306)
53 3zyj_A Leucine-rich repeat-con 99.9 8.5E-27 2.9E-31 253.0 24.4 253 380-714 45-298 (440)
54 2z80_A TOLL-like receptor 2, v 99.9 7.9E-28 2.7E-32 253.2 14.2 281 329-689 30-319 (353)
55 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.7E-31 252.3 23.6 272 380-733 56-346 (452)
56 2z66_A Variable lymphocyte rec 99.9 4.5E-27 1.5E-31 242.3 18.4 263 354-693 28-296 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-26 5.3E-31 235.6 20.0 264 381-732 14-278 (285)
58 3ogk_B Coronatine-insensitive 99.9 3.2E-28 1.1E-32 276.0 5.3 427 51-531 71-547 (592)
59 3ogk_B Coronatine-insensitive 99.9 1.6E-28 5.4E-33 278.5 -1.3 417 14-442 68-529 (592)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.9E-30 228.4 18.9 225 284-536 14-239 (285)
61 4fcg_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 229.7 20.2 234 354-684 81-314 (328)
62 4fcg_A Uncharacterized protein 99.9 5.1E-25 1.8E-29 228.1 19.9 224 401-706 80-312 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-27 3.3E-31 240.5 6.5 255 336-681 16-272 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.8E-31 240.1 2.9 264 356-709 12-276 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-23 7.3E-28 232.2 29.5 268 306-695 41-308 (622)
66 2p1m_B Transport inhibitor res 99.9 2.2E-27 7.7E-32 269.2 -5.3 427 51-532 64-541 (594)
67 3oja_A Leucine-rich immune mol 99.9 1.8E-25 6E-30 244.5 9.9 147 379-535 35-182 (487)
68 1wwl_A Monocyte differentiatio 99.9 2.8E-26 9.5E-31 236.5 2.8 246 353-685 42-310 (312)
69 3oja_A Leucine-rich immune mol 99.9 3.3E-25 1.1E-29 242.4 10.7 247 400-712 32-286 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-23 1.1E-27 230.8 26.6 269 281-671 40-308 (622)
71 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.7E-28 213.4 20.8 210 402-689 28-242 (276)
72 1wwl_A Monocyte differentiatio 99.9 2.7E-25 9.1E-30 229.1 8.3 133 301-439 39-186 (312)
73 2o6q_A Variable lymphocyte rec 99.9 3.7E-23 1.3E-27 208.4 22.8 208 426-689 16-223 (270)
74 2p1m_B Transport inhibitor res 99.9 1.5E-27 5.3E-32 270.6 -10.8 84 599-682 456-542 (594)
75 2o6q_A Variable lymphocyte rec 99.9 6E-23 2E-27 206.8 23.9 206 450-712 17-222 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.2E-28 210.4 18.7 208 450-712 29-241 (276)
77 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.4E-27 204.8 22.1 206 423-688 7-212 (290)
78 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.9E-27 205.6 21.1 205 448-713 9-213 (290)
79 3rfs_A Internalin B, repeat mo 99.9 4.6E-22 1.6E-26 200.5 18.2 209 398-694 37-245 (272)
80 3m19_A Variable lymphocyte rec 99.9 1.8E-21 6E-26 193.7 19.2 181 451-688 16-196 (251)
81 3rfs_A Internalin B, repeat mo 99.9 8.3E-21 2.8E-25 191.3 20.5 165 470-689 59-223 (272)
82 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 187.7 19.6 181 474-710 14-194 (251)
83 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4.2E-25 186.2 16.3 78 600-681 156-236 (239)
84 4glp_A Monocyte differentiatio 99.8 2.9E-21 9.9E-26 198.8 10.7 209 402-685 91-308 (310)
85 3goz_A Leucine-rich repeat-con 99.8 5E-22 1.7E-26 209.3 4.1 260 358-686 2-299 (362)
86 2xwt_C Thyrotropin receptor; s 99.8 5.4E-20 1.8E-24 181.6 16.9 196 306-532 32-236 (239)
87 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.7E-25 193.8 12.6 56 600-660 252-307 (310)
88 2ca6_A RAN GTPase-activating p 99.8 1.3E-21 4.5E-26 208.4 4.9 99 43-143 23-135 (386)
89 3goz_A Leucine-rich repeat-con 99.8 8.2E-22 2.8E-26 207.6 3.0 107 309-416 2-123 (362)
90 2ca6_A RAN GTPase-activating p 99.8 1.9E-22 6.4E-27 215.0 -2.1 166 470-688 118-320 (386)
91 2ast_B S-phase kinase-associat 99.8 1.5E-21 5.2E-26 204.0 4.1 252 356-692 49-314 (336)
92 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4.1E-24 186.0 17.7 195 399-686 38-232 (308)
93 2v9t_B SLIT homolog 2 protein 99.8 4.3E-20 1.5E-24 179.1 13.3 196 477-736 14-209 (220)
94 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.4E-26 203.3 3.7 126 306-436 48-178 (336)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-20 1.6E-24 178.8 12.6 193 477-735 14-209 (220)
96 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4.3E-24 185.9 15.7 148 352-535 39-186 (308)
97 4ay9_X Follicle-stimulating ho 99.8 4.2E-19 1.5E-23 185.8 19.1 243 259-532 12-256 (350)
98 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.7E-23 182.7 19.7 203 308-539 12-219 (350)
99 2o6s_A Variable lymphocyte rec 99.8 9.8E-19 3.3E-23 168.5 15.9 162 473-694 27-188 (208)
100 2xot_A Amphoterin-induced prot 99.8 3.1E-19 1.1E-23 187.6 13.3 180 452-688 21-206 (361)
101 2v9t_B SLIT homolog 2 protein 99.8 7.3E-19 2.5E-23 170.4 14.3 158 501-714 14-171 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-18 7.8E-23 166.9 13.5 158 501-714 14-172 (220)
103 2o6s_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 162.8 16.5 130 306-436 29-158 (208)
104 3e6j_A Variable lymphocyte rec 99.8 6.9E-18 2.4E-22 164.7 16.7 156 476-688 21-176 (229)
105 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.9E-23 181.9 13.0 180 477-712 21-206 (361)
106 3cvr_A Invasion plasmid antige 99.8 9.9E-18 3.4E-22 184.2 18.1 149 473-695 99-254 (571)
107 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.5E-22 162.1 16.5 157 499-712 20-176 (229)
108 1h6t_A Internalin B; cell adhe 99.7 3.1E-17 1.1E-21 166.5 17.0 152 470-686 64-215 (291)
109 3cvr_A Invasion plasmid antige 99.7 3.4E-17 1.2E-21 179.9 16.9 187 379-670 60-253 (571)
110 1w8a_A SLIT protein; signaling 99.7 4.7E-17 1.6E-21 154.0 12.6 127 600-735 55-182 (192)
111 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.2E-21 177.7 16.8 80 600-685 132-211 (605)
112 1xeu_A Internalin C; cellular 99.7 5.7E-17 2E-21 161.7 11.7 169 450-687 20-188 (263)
113 2wfh_A SLIT homolog 2 protein 99.7 1E-16 3.5E-21 151.5 12.5 135 600-735 32-182 (193)
114 4ezg_A Putative uncharacterize 99.7 9E-17 3.1E-21 153.0 12.1 154 471-685 41-195 (197)
115 4fdw_A Leucine rich hypothetic 99.7 1.9E-15 6.4E-20 159.7 22.8 249 371-684 129-383 (401)
116 1m9s_A Internalin B; cell inva 99.7 2.2E-16 7.7E-21 175.6 15.9 163 335-535 26-188 (605)
117 3sb4_A Hypothetical leucine ri 99.7 5.8E-17 2E-21 168.0 10.5 288 304-677 24-327 (329)
118 1h6t_A Internalin B; cell adhe 99.7 6.2E-16 2.1E-20 156.9 17.2 147 280-439 67-213 (291)
119 1w8a_A SLIT protein; signaling 99.7 2.6E-16 8.8E-21 148.9 12.2 174 477-711 11-186 (192)
120 3sb4_A Hypothetical leucine ri 99.7 1.1E-16 3.8E-21 166.0 9.3 285 329-700 24-326 (329)
121 4fs7_A Uncharacterized protein 99.7 4E-15 1.4E-19 158.3 20.7 220 298-531 87-306 (394)
122 4ezg_A Putative uncharacterize 99.6 4.8E-16 1.6E-20 147.9 11.8 133 470-661 62-195 (197)
123 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.1E-19 153.5 22.6 270 305-660 113-383 (401)
124 2wfh_A SLIT homolog 2 protein 99.6 3.4E-15 1.2E-19 141.0 14.1 89 600-688 55-143 (193)
125 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.8E-20 151.6 10.2 169 330-537 19-187 (263)
126 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 135.8 14.0 89 600-688 53-141 (177)
127 1dce_A Protein (RAB geranylger 99.6 7.1E-18 2.4E-22 186.6 -9.6 122 499-678 442-567 (567)
128 2ell_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 137.1 10.6 85 600-684 72-160 (168)
129 4fs7_A Uncharacterized protein 99.6 7.3E-14 2.5E-18 148.6 21.2 317 293-681 59-376 (394)
130 1dce_A Protein (RAB geranylger 99.6 7.2E-17 2.5E-21 178.5 -2.8 180 450-689 350-551 (567)
131 2ell_A Acidic leucine-rich nuc 99.6 6.6E-15 2.3E-19 136.1 10.1 134 473-661 23-161 (168)
132 2je0_A Acidic leucine-rich nuc 99.5 7.1E-15 2.4E-19 132.8 8.3 80 600-679 65-148 (149)
133 2o6r_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 131.6 13.4 114 599-712 28-141 (177)
134 2je0_A Acidic leucine-rich nuc 99.5 1E-14 3.5E-19 131.8 7.4 129 473-656 16-149 (149)
135 4b8c_D Glucose-repressible alc 99.5 2.1E-15 7.2E-20 172.3 3.0 166 354-544 173-338 (727)
136 4b8c_D Glucose-repressible alc 99.5 4E-15 1.4E-19 170.1 4.6 191 426-681 173-369 (727)
137 3g39_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 128.0 11.5 90 600-689 31-120 (170)
138 4gt6_A Cell surface protein; l 99.5 2.3E-12 7.8E-17 137.0 23.3 148 283-437 66-216 (394)
139 3g39_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 125.8 11.1 110 600-712 10-119 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.4 1.5E-13 5E-18 128.0 7.8 84 600-685 65-154 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.7E-18 127.6 7.4 133 470-660 15-153 (176)
142 2r9u_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 122.7 11.3 109 580-689 15-123 (174)
143 4gt6_A Cell surface protein; l 99.4 3.2E-11 1.1E-15 128.2 25.2 299 296-683 54-369 (394)
144 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 120.3 12.4 109 601-712 14-122 (174)
145 1ds9_A Outer arm dynein; leuci 99.4 2.3E-15 7.8E-20 143.4 -8.6 154 471-684 15-185 (198)
146 1ds9_A Outer arm dynein; leuci 99.3 1.6E-14 5.6E-19 137.4 -8.3 138 494-689 14-158 (198)
147 2ifg_A High affinity nerve gro 99.3 5.7E-12 1.9E-16 131.7 10.1 112 600-712 32-145 (347)
148 4h09_A Hypothetical leucine ri 99.3 1.1E-09 3.7E-14 115.8 25.6 144 470-671 213-356 (379)
149 4h09_A Hypothetical leucine ri 99.2 9.3E-10 3.2E-14 116.3 23.6 154 470-681 190-343 (379)
150 2ifg_A High affinity nerve gro 99.2 1.8E-11 6.2E-16 127.8 9.4 109 602-713 11-121 (347)
151 3un9_A NLR family member X1; l 99.1 7.4E-12 2.5E-16 130.8 -2.4 135 305-439 101-252 (372)
152 3un9_A NLR family member X1; l 99.1 4.5E-12 1.5E-16 132.5 -4.2 136 256-391 101-252 (372)
153 1io0_A Tropomodulin; LRR prote 98.6 4.9E-09 1.7E-13 97.7 1.4 124 45-170 29-166 (185)
154 2ra8_A Uncharacterized protein 98.6 3E-08 1E-12 102.4 6.8 167 51-246 137-321 (362)
155 2ra8_A Uncharacterized protein 98.6 1.3E-08 4.3E-13 105.3 3.4 162 470-682 168-341 (362)
156 1io0_A Tropomodulin; LRR prote 98.6 4.8E-09 1.6E-13 97.7 0.1 119 14-143 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 8.9E-12 90.1 2.6 83 50-136 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.1 1.9E-06 6.5E-11 84.0 4.6 66 621-688 168-237 (267)
159 3e4g_A ATP synthase subunit S, 97.9 2E-06 6.9E-11 77.4 1.5 84 53-141 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 75.4 3.0 93 72-166 52-150 (176)
161 3rfe_A Platelet glycoprotein I 97.8 2.3E-05 7.8E-10 67.4 5.0 99 627-733 12-111 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 9E-06 3.1E-10 74.7 2.1 117 51-168 39-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 1.1E-05 3.9E-10 74.0 -0.6 116 16-142 38-169 (197)
164 3rfe_A Platelet glycoprotein I 97.3 0.00022 7.6E-09 61.2 5.2 62 650-713 11-73 (130)
165 2lz0_A Uncharacterized protein 62.5 18 0.0006 28.6 6.2 38 372-410 14-51 (100)
166 2lz0_A Uncharacterized protein 57.8 21 0.00072 28.1 5.9 48 609-657 6-53 (100)
167 2k1k_A Ephrin type-A receptor 22.2 35 0.0012 21.2 1.3 7 748-754 19-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-73 Score=662.49 Aligned_cols=690 Identities=29% Similarity=0.421 Sum_probs=580.6
Q ss_pred CCcceecCCCCCCCCCCCCEEeCCCCcccccccccccccc---cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCC
Q 004005 4 CEVNGVVRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTS---FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSL 80 (779)
Q Consensus 4 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l 80 (779)
|.-.|..|. -.+++.|+|+++. +.+. ++..+. .+++|+.++++.+.+ ..+|+.++++
T Consensus 40 C~w~gv~C~-----~~~v~~L~L~~~~---------l~g~~~~l~~~l~-~L~~L~~l~~~~~~~-----~~l~~~~~~l 99 (768)
T 3rgz_A 40 CTFDGVTCR-----DDKVTSIDLSSKP---------LNVGFSAVSSSLL-SLTGLESLFLSNSHI-----NGSVSGFKCS 99 (768)
T ss_dssp GGSTTEEEE-----TTEEEEEECTTSC---------CCEEHHHHHHHTT-TCTTCCEEECTTSCE-----EECCCCCCCC
T ss_pred cCCcceEEC-----CCcEEEEECCCCC---------cCCccCccChhHh-ccCcccccCCcCCCc-----CCCchhhccC
Confidence 344566563 2589999999998 6666 778888 899999999998876 4567889999
Q ss_pred CCCCEEeccCCCCCCCcch--hhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCccc--ccCCCC
Q 004005 81 VHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP--LFNYSR 156 (779)
Q Consensus 81 ~~L~~L~L~~~~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~--l~~l~~ 156 (779)
++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+... +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 9999999999999988888 999999999999999999988887445899999999999999986544221 789999
Q ss_pred CcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcE
Q 004005 157 LKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLET 236 (779)
Q Consensus 157 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 236 (779)
|++|++++|.+.+..+ ...+.+|++|++ +.+.+++..|. ++.+++|++|++++|.+++.+|..+ ..+++|++
T Consensus 180 L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~ 251 (768)
T 3rgz_A 180 LKHLAISGNKISGDVD-----VSRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKL 251 (768)
T ss_dssp CCEEECCSSEEESCCB-----CTTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCE
T ss_pred CCEEECCCCcccccCC-----cccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCE
Confidence 9999999999876433 255679999999 66777777776 9999999999999999998888775 79999999
Q ss_pred EEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCc
Q 004005 237 LFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 316 (779)
Q Consensus 237 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 316 (779)
|++++|.+.+..+.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 999999998876654 889999999999999989999988877999999999999999999999999999999999999
Q ss_pred CccccchhhhhCCCCCCEEEccCcccCccCcccCCCCC-CCCEEEccCCcCCccCCccccC--CCCCCEEEccCCCCCCC
Q 004005 317 LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSK--CSSLEGLYLNNNSLLGK 393 (779)
Q Consensus 317 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~ 393 (779)
+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 99899988777899999999999999988888888877 9999999999999888877766 88999999999999988
Q ss_pred cCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccC
Q 004005 394 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFN 472 (779)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~ 472 (779)
.|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+.+.+|.. +.+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSN 488 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-Hhc
Confidence 999999999999999999999999999999999999999999999988887665 889999999999998888876 899
Q ss_pred CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005 473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 552 (779)
Q Consensus 473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 552 (779)
+++|++|++++|++++.+|.++..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|..+..........
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776543221111
Q ss_pred CCCCCC----------cchhh---hhhcccc--cccccccccceeeeeecccee-e-eccccccCcceEEccCCcccccC
Q 004005 553 NSSSPD----------EQFEI---FFSIEGH--QGFLEKQNHEIFEFTTKNIAY-I-YQGKVLSLLSGLDLSCNKLIGHI 615 (779)
Q Consensus 553 ~~~~~~----------~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~L~~L~Ls~n~l~~~~ 615 (779)
...... ..... .....+. .............+....... + .....++.|++||+++|++++.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 000000 00000 0000000 000000000000111111100 0 11234678999999999999999
Q ss_pred cccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc
Q 004005 616 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 695 (779)
Q Consensus 616 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 695 (779)
|..++.+++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|.. .++.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~ 727 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 004005 696 TFNESSYEGNTFLCGLPLPICRSPATMPEA 725 (779)
Q Consensus 696 ~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~ 725 (779)
++...++.|||.+|+.|++.|....+....
T Consensus 728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~ 757 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYA 757 (768)
T ss_dssp GSCGGGGCSCTEEESTTSCCCCSCC-----
T ss_pred cCCHHHhcCCchhcCCCCcCCCCCccCCCC
Confidence 999999999999999998889766654443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.6e-67 Score=607.17 Aligned_cols=604 Identities=29% Similarity=0.387 Sum_probs=391.9
Q ss_pred CCCCCccee---cCCCCCCCCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccc--
Q 004005 1 MSSCEVNGV---VRSQGFPHFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQ-- 75 (779)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~-- 75 (779)
|+++++.|. +++ ++.++++|+.++++.+. .. ..+..+. .+++|++|+|++|.+ .+.+|.
T Consensus 57 L~~~~l~g~~~~l~~-~l~~L~~L~~l~~~~~~---------~~-~l~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~ 120 (768)
T 3rgz_A 57 LSSKPLNVGFSAVSS-SLLSLTGLESLFLSNSH---------IN-GSVSGFK-CSASLTSLDLSRNSL----SGPVTTLT 120 (768)
T ss_dssp CTTSCCCEEHHHHHH-HTTTCTTCCEEECTTSC---------EE-ECCCCCC-CCTTCCEEECCSSEE----EEEGGGGG
T ss_pred CCCCCcCCccCccCh-hHhccCcccccCCcCCC---------cC-CCchhhc-cCCCCCEEECCCCcC----CCcCCChH
Confidence 456667776 553 56666666666666665 22 1234445 666666666666666 444555
Q ss_pred cccCCCCCCEEeccCCCCCCCcchhh-cCCCCCCEEEcCCCcccCCCCccc---ccCCCCCCEEEccCccccCcCCcccc
Q 004005 76 GLCSLVHLQELYIASNDLRGSLPWCM-ANMTSLRILDVSSNQLTGSISSSP---LVHLTSIEELMLSNNYFQIPISLEPL 151 (779)
Q Consensus 76 ~l~~l~~L~~L~L~~~~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~l~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~l 151 (779)
.++++++|++|+|++|.+.+..|..+ .++++|++|++++|++.+..|. . ++++++|++|++++|.+++..+ +
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~ 196 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---V 196 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---C
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---c
Confidence 56666666666666666655555444 5666666666666666644443 3 5566666666666666654322 2
Q ss_pred cCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcC
Q 004005 152 FNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENN 231 (779)
Q Consensus 152 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 231 (779)
..+++|++|++++|.+.+..+. +...++|++|++ +.+.+++..|..+..+++|++|++++|.+.+.+|.. .+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l 268 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PL 268 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CC
T ss_pred ccCCcCCEEECcCCcCCCCCcc----cccCCCCCEEEC-cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---cc
Confidence 5566666666666666543322 344456666666 455555556666666666666666666666555543 55
Q ss_pred CCCcEEEcCCCcCcCCCCcCcCCC-CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCcc-ccCCCCCCE
Q 004005 232 TKLETLFLVNDSLAGPFRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMKFLQI 309 (779)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~ 309 (779)
++|++|++++|.+.+.++..+... ++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|.. +..+++|++
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 666666666666665555555443 66666666666666555554443 566666666666666555544 666666666
Q ss_pred EEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCC--CCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 004005 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN--LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 387 (779)
Q Consensus 310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 387 (779)
|++++|.+.+.+|..+....++|++|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 6666666665555555432226666666666665555444443 55666666666666666666666666666666666
Q ss_pred CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccC
Q 004005 388 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLK 466 (779)
Q Consensus 388 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~ 466 (779)
|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+. +++|+.|++++|++.+.+|
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 666656666666666666666666666666666666666666666666666655554443 5566666666666655555
Q ss_pred cccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-------------------------------
Q 004005 467 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS------------------------------- 515 (779)
Q Consensus 467 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------- 515 (779)
.. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|
T Consensus 508 ~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 508 KW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp GG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred hH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 54 5566666666666666666666666666666666666666654444
Q ss_pred ---------------------------------------ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCC
Q 004005 516 ---------------------------------------VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 556 (779)
Q Consensus 516 ---------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 556 (779)
..+..+++|+.|++++|+++|.+|..+..++
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~---------- 656 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP---------- 656 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT----------
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc----------
Confidence 3445567788888888888888888776654
Q ss_pred CCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccc
Q 004005 557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636 (779)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 636 (779)
.|+.|+|++|++++.+|..++++++|+.|+|++|+++
T Consensus 657 -------------------------------------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 657 -------------------------------------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp -------------------------------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred -------------------------------------------cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 7999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 637 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 688 (779)
+.+|..++.+++|++|++++|++++.+|.. ..+.++....+.+|+--|-.|
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 999999999999999999999999999964 344555566678887554333
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-60 Score=544.36 Aligned_cols=638 Identities=21% Similarity=0.217 Sum_probs=470.4
Q ss_pred CEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhh
Q 004005 22 EHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCM 101 (779)
Q Consensus 22 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 101 (779)
+.++.+++. +. .+|..+. +++++|++++|.+ .+..+.+|.++++|++|+|++|.+.+..|.+|
T Consensus 7 ~~~~cs~~~---------L~-~ip~~~~---~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 69 (680)
T 1ziw_A 7 EVADCSHLK---------LT-QVPDDLP---TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELC 69 (680)
T ss_dssp SEEECCSSC---------CS-SCCSCSC---TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred CeeECCCCC---------cc-ccccccC---CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence 677888777 43 3454333 6899999999998 34444568999999999999999998899999
Q ss_pred cCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCc
Q 004005 102 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPK 181 (779)
Q Consensus 102 ~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 181 (779)
+++++|++|++++|++. .+|...++++++|++|++++|.+++ ++...+.++++|++|++++|.+.+..... +..+
T Consensus 70 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l 144 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT---QVQL 144 (680)
T ss_dssp HHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCS---SSCC
T ss_pred hcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchh---hccc
Confidence 99999999999999998 6777679999999999999999874 45567899999999999999987654433 4556
Q ss_pred ccccEEecCCCCCCCCCCchhhc--CCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCc---CCCC
Q 004005 182 FQLNTLSLSSNYGDGFIFPKFLY--HQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPI---HSHK 256 (779)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~ 256 (779)
.+|++|++ +.+.+++..+..+. .+++|++|++++|.+.+..|..+ ..+++|+.|++.++.+.......+ ...+
T Consensus 145 ~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 145 ENLQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp TTCCEEEC-CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccCCEEEc-cCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 78999999 66666666666554 45789999999998886555554 788899999998887653211111 1247
Q ss_pred ccCEEEccCCcCCCCCCccccccC--CCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCE
Q 004005 257 RLRQLDVSNNNIRGHIPVKIGDVL--PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 334 (779)
Q Consensus 257 ~L~~L~l~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 334 (779)
+|++|++++|.+.+..|..+.. + ++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ ..+.++++|+.
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 300 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRY 300 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCE
T ss_pred cccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccE
Confidence 8999999999888666655544 3 349999999999988888889999999999999999884444 44457899999
Q ss_pred EEccCcccCc---------cCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCC--CcCccccC--C
Q 004005 335 LALSNNNLQG---------HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG--KIPRWLGN--L 401 (779)
Q Consensus 335 L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~--l 401 (779)
|++++|...+ +....|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .....|.. .
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 9998764432 222367788999999999999998888888999999999999887532 22223333 3
Q ss_pred CCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCC-Ccc-CcccccEEEccCcccccccCcccccCCCCccEE
Q 004005 402 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP-SCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479 (779)
Q Consensus 402 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 479 (779)
++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+ ..+ .+++|+.|++++|.+.+..+ ..|..+++|+.|
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh-hhhhcCcccccc
Confidence 589999999999988888888899999999999998876554 333 47789999999998855444 448889999999
Q ss_pred eccCccCC--CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCC
Q 004005 480 DLSYNRLN--GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSP 557 (779)
Q Consensus 480 ~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 557 (779)
++++|.+. +..|..+..+++|+.|++++|++++..+..+.++++|++|++++|++++..+..+....
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----------- 528 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP----------- 528 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-----------
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-----------
Confidence 99998876 45778888899999999999999887777888899999999999988754322221100
Q ss_pred CcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccccc
Q 004005 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 637 (779)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 637 (779)
......+++|++|++++|+++...+..|.++++|++|+|++|++++
T Consensus 529 ----------------------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 529 ----------------------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp ----------------------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 0001224579999999999986555678999999999999999998
Q ss_pred CCCCCCCCCCCCCEEECCCCcCCCCCccccc-CCCCCcEEeccCCcCcccCC--CCccccccCCcccccCCCCCCCC-CC
Q 004005 638 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLEVFSVAYNNLSGEIP--EWKAQFATFNESSYEGNTFLCGL-PL 713 (779)
Q Consensus 638 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~~~~~~~~n~~~c~~-~l 713 (779)
+.+..|.++++|+.|++++|++++..+..+. .+++|+.+++++|++.|.|+ .|+..|..-.... .-+. ..
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~------~~~~~~~ 648 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN------IPELSSH 648 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----------------
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcc------cccccCC
Confidence 8788889999999999999999988887777 78899999999999999887 3443332211111 1111 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccc
Q 004005 714 PICRSPATMPEASIGNEQDDNLID 737 (779)
Q Consensus 714 ~~c~~~~~~~~~~~~~~~~~~~~~ 737 (779)
..|..|....++.+.++++..+++
T Consensus 649 ~~C~~p~~~~g~~l~~~~~~~~~~ 672 (680)
T 1ziw_A 649 YLCNTPPHYHGFPVRLFDTSSCKD 672 (680)
T ss_dssp ------------------------
T ss_pred cEECCchHHCCCcccccChhhcCC
Confidence 248888888888888887776654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-58 Score=529.37 Aligned_cols=573 Identities=22% Similarity=0.212 Sum_probs=483.9
Q ss_pred CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005 19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP 98 (779)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~ 98 (779)
+++++|+++++. +.+..+..+. .+++|++|++++|.+ .+..|.+++++++|++|+|++|.+++..+
T Consensus 25 ~~l~~L~Ls~n~---------l~~~~~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTHNQ---------LRRLPAANFT-RYSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp TTCSEEECCSSC---------CCCCCGGGGG-GGTTCSEEECCSSCC----CCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEECCCCC---------CCCcCHHHHh-CCCcCcEEECCCCcc----CccCHHHHhcccCcCEEECCCCccCccCh
Confidence 689999999998 6666666788 999999999999999 45567788999999999999999996666
Q ss_pred hhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccccc
Q 004005 99 WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI 178 (779)
Q Consensus 99 ~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 178 (779)
.+|+++++|++|++++|++. .++...++++++|++|++++|.+++. ....+.++++|++|++++|.+++.....+. .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~ 167 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELD-I 167 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHG-G
T ss_pred hhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCHHHhh-c
Confidence 68999999999999999998 56654899999999999999999864 445788999999999999998775543322 1
Q ss_pred CCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhh--hcCCCCcEEEcCCCcCcCCCCcCcCCCC
Q 004005 179 APKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL--ENNTKLETLFLVNDSLAGPFRLPIHSHK 256 (779)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 256 (779)
....+|+.|++ +.+.+++..+..+..+++|+.++++++.+.+.....+. ...++|++|++++|.+.+..+..+..++
T Consensus 168 ~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 168 FANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred cccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 23468999999 66678888888999999999999999987643333221 1358999999999999988888888775
Q ss_pred c--cCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCcc--------ccchhhh
Q 004005 257 R--LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG--------EIPEHLA 326 (779)
Q Consensus 257 ~--L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~ 326 (779)
. |++|++++|.+++..+..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|...+ .++...+
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred cCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 5 9999999999985544444 458999999999999999999999999999999999876543 2223345
Q ss_pred hCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCc--cCCccccC--CCCCCEEEccCCCCCCCcCccccCCC
Q 004005 327 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG--EIPQSLSK--CSSLEGLYLNNNSLLGKIPRWLGNLT 402 (779)
Q Consensus 327 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~ 402 (779)
..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .....|.. .++|+.|++++|.+.+..+..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 679999999999999999888889999999999999997542 22333433 35899999999999988889999999
Q ss_pred CCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccc--cccCcccccCCCCccE
Q 004005 403 RLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLH--GQLKRGTFFNCSSLVT 478 (779)
Q Consensus 403 ~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~ 478 (779)
+|+.|++++|.+.+.++ ..+.++++|++|++++|++.+..+..+. +++|+.|++++|.+. +.++.. |.++++|+.
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~ 484 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTI 484 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cccCCCCCE
Confidence 99999999999986554 6789999999999999999887776665 889999999999885 344554 899999999
Q ss_pred EeccCccCCCccCccccCCCCCCEEEccCCccccccc--------ccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS--------VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550 (779)
Q Consensus 479 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 550 (779)
|++++|++++..+.++.++++|+.|++++|++++..+ ..+.++++|+.|++++|+++...+..|..++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~---- 560 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF---- 560 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc----
Confidence 9999999998888889999999999999999986422 2378899999999999999866666666544
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEEC
Q 004005 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 630 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 630 (779)
+|++|++++|++++..+..|.++++|+.|+|
T Consensus 561 -------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 561 -------------------------------------------------ELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp -------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------------------------------------------CcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence 7999999999999877777899999999999
Q ss_pred cccccccCCCCCCC-CCCCCCEEECCCCcCCCCCc
Q 004005 631 SHNNLTGSIPSTFS-NLKHVESLDLSNNKLNGKIP 664 (779)
Q Consensus 631 s~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~ 664 (779)
++|++++..+..|. .+++|++|++++|++.+..+
T Consensus 592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999988887777 78999999999999987654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-56 Score=519.17 Aligned_cols=567 Identities=22% Similarity=0.181 Sum_probs=404.4
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCc-chhhcCCCCCCEEEcCCCcccCCCCcccccCCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSL-PWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 131 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~ 131 (779)
+++++|+|++|.+ ....|.+|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|. .++++++
T Consensus 24 ~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred CCcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcc
Confidence 5777777777777 3344556677777777777777544444 66777777777777777777644454 6777777
Q ss_pred CCEEEccCccccCcCCc-ccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005 132 IEELMLSNNYFQIPISL-EPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE 210 (779)
Q Consensus 132 L~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 210 (779)
|++|++++|.+++..+. ..+.++++|++|++++|.+.+. ..+..++.+++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---------------------------YLHPSFGKLNSLK 151 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC---------------------------CCCGGGGTCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc---------------------------ccchhHhhCCCCC
Confidence 77777777777653322 2366666666666666654421 1234677788889
Q ss_pred EEEccCccCcccCChhhhhcC--CCCcEEEcCCCcCcCCCCcCcCCCCc------cCEEEccCCcCCCCCCccccccC--
Q 004005 211 YVDLSHIKMNGEFPNWLLENN--TKLETLFLVNDSLAGPFRLPIHSHKR------LRQLDVSNNNIRGHIPVKIGDVL-- 280 (779)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~n~i~~~~~~~~~~~l-- 280 (779)
+|++++|.+.+..+..+ ..+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+.+.++..+...+
T Consensus 152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 99998888887666665 444 78888888888888777666665554 88888888877766666555432
Q ss_pred CCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhC--CCCCCEEEccCcccCccCcccCCCCCCCCE
Q 004005 281 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG--CVNLQFLALSNNNLQGHLFSRNFNLTNLQW 358 (779)
Q Consensus 281 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 358 (779)
..++.+.++.+..... +..+.+. ......+.+ .++|+.|++++|.+.+..+..+..+++|+.
T Consensus 231 ~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred ccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 3456666653332210 1122222 122222223 367888999888888877888888899999
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcC
Q 004005 359 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNI 438 (779)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 438 (779)
|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|.++++|++|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 99999988888888888889999999999988877788888899999999999988877777788889999999999888
Q ss_pred ccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccC-ccccCCCCCCEEEccCCcccccccc-
Q 004005 439 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV- 516 (779)
Q Consensus 439 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~- 516 (779)
++... +++|+.+++++|++. .++.. ..+++.|++++|.+.+... ..+..+++|+.|++++|++++..+.
T Consensus 375 ~~i~~----~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 375 TTIHF----IPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CCCSS----CCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred CcccC----CCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 75332 667888888888875 34432 4678899999999886432 2345789999999999998865433
Q ss_pred cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccc
Q 004005 517 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK 596 (779)
Q Consensus 517 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (779)
.+..+++|+.|++++|.+++..+...... ...
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------~~~ 477 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWD------------------------------------------------VFE 477 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSS------------------------------------------------CSS
T ss_pred ccccCCccccccCCCCccccccccccchh------------------------------------------------hhc
Confidence 35668899999999998874332211000 001
Q ss_pred cccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEE
Q 004005 597 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 676 (779)
Q Consensus 597 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 676 (779)
.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+. ++|+.|+|++|++++..|..| .+|+.+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l 552 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVL 552 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEE
Confidence 234789999999999988888899999999999999999977777666 889999999999998888665 478899
Q ss_pred eccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCc
Q 004005 677 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPI-CRSPATMPEASIGNEQDDNL 735 (779)
Q Consensus 677 ~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~-c~~~~~~~~~~~~~~~~~~~ 735 (779)
++++|++.|.|+. .. |..+...++...|+.+... |..|....+.++.+.....|
T Consensus 553 ~l~~Np~~C~c~~--~~---f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 553 DITHNKFICECEL--ST---FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp EEEEECCCCSSSC--CS---HHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred EecCCCccccccc--HH---HHHHHHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence 9999999998873 22 2223334456666655443 99999888877776665544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.5e-54 Score=487.36 Aligned_cols=558 Identities=20% Similarity=0.200 Sum_probs=362.0
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI 132 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L 132 (779)
+++++|++++|.+ ....|.+|.++++|++|+|++|++.+..|.+|+++++|++|++++|++.+..|. .++++++|
T Consensus 33 ~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTC
T ss_pred CcCcEEEccCCcc----CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccc
Confidence 3677777777777 333355677777777777777777766677777777777777777777644444 67777777
Q ss_pred CEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEE
Q 004005 133 EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 212 (779)
Q Consensus 133 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 212 (779)
++|++++|.+++ +....+.++++|++|++++|.+.+.. .|.. ..+++|++|
T Consensus 108 ~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~---------------------------~~~~-~~l~~L~~L 158 (606)
T 3t6q_A 108 KHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK---------------------------LPKG-FPTEKLKVL 158 (606)
T ss_dssp CEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCC---------------------------CCTT-CCCTTCCEE
T ss_pred cEeeccccCccc-CCcchhccCCcccEEECCCCcccccC---------------------------cccc-cCCcccCEE
Confidence 777777777664 22234566666666666666554311 1222 225678888
Q ss_pred EccCccCcccCChhhhhcCCCCc--EEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC
Q 004005 213 DLSHIKMNGEFPNWLLENNTKLE--TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 290 (779)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~ 290 (779)
++++|.+.+..+.. ++.+++|+ +|++++|.+.+..+..+.. .+|++|++++|.. ++..+. .+..+....+..
T Consensus 159 ~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~-~l~~~~l~~l~~ 232 (606)
T 3t6q_A 159 DFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFK-GLKNSTIQSLWL 232 (606)
T ss_dssp ECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHH-HTTTCEEEEEEC
T ss_pred EcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhh-hccccchhheec
Confidence 88888777544444 46777777 7777777777655544433 5677777776641 111111 122222222211
Q ss_pred CCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCC--CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCc
Q 004005 291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG 368 (779)
Q Consensus 291 n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 368 (779)
..+ ..+... .++...+.++. +|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 233 ~~~-----------~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 233 GTF-----------EDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp CCC-----------TTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred hhh-----------cccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 111 011000 11222222222 5666777777666666666666677777777777666
Q ss_pred cCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCccCC--CC-
Q 004005 369 EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSL--PS- 444 (779)
Q Consensus 369 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~- 444 (779)
.+|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.. +.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 455566666777777777777665556666667777777777776654333 33666777777777777666543 22
Q ss_pred ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCc-cccCCCCCCEEEccCCcccccccccccCCCC
Q 004005 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 523 (779)
Q Consensus 445 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 523 (779)
...+++|+.|++++|.+.+..+. .|..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 22355666666666666444443 378888999999999988866554 4788889999999999988878888888899
Q ss_pred CCEEEccCCcCCCCC---CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccC
Q 004005 524 LQLLDLSNNNLHGPI---PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600 (779)
Q Consensus 524 L~~L~l~~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (779)
|++|++++|++.+.. +..+.. +++
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~-----------------------------------------------------l~~ 477 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQT-----------------------------------------------------LGR 477 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGG-----------------------------------------------------CTT
T ss_pred CCEEECCCCCCCccccccchhhcc-----------------------------------------------------CCC
Confidence 999999999886421 122222 347
Q ss_pred cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccC
Q 004005 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680 (779)
Q Consensus 601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 680 (779)
|++|++++|++++..|..|..+++|++|+|++|++++..|..|.++++| +|++++|++++..|..+..+++|+.|++++
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 8899999999988888888889999999999999988888888889999 999999999888888888888999999999
Q ss_pred CcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 681 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQ 731 (779)
Q Consensus 681 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~ 731 (779)
|+++|.|+. .++..|.... ....-+.....|..|....++.+.+.+
T Consensus 557 N~~~c~c~~--~~~~~w~~~~---~~~~~~~~~~~C~~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 557 NPLDCTCSN--IYFLEWYKEN---MQKLEDTEDTLCENPPLLRGVRLSDVT 602 (606)
T ss_dssp CCEECSGGG--HHHHHHHHHC---GGGEECGGGCBEEESGGGTTCBGGGCC
T ss_pred CCccccCCc--HHHHHHHHhC---cccccCCCCCeeCCchHhCCCeeeeee
Confidence 999888773 1111111100 000001111248888888887665554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-52 Score=473.07 Aligned_cols=518 Identities=23% Similarity=0.251 Sum_probs=388.3
Q ss_pred CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005 19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP 98 (779)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~ 98 (779)
+++++|++++|. +....+..+. .+++|++|++++|.+ ....|.+|.++++|++|+|++|.+.+..|
T Consensus 33 ~~l~~L~Ls~n~---------i~~~~~~~~~-~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFNV---------LPTIQNTTFS-RLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTTCC---------CSEECTTTST-TCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcCcEEEccCCc---------cCcCChhHhc-cCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccccCh
Confidence 479999999999 7766677888 999999999999999 55567889999999999999999998889
Q ss_pred hhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccccc
Q 004005 99 WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI 178 (779)
Q Consensus 99 ~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 178 (779)
..|+++++|++|++++|++. .++...++++++|++|++++|.+++. ....+..+++|++|++++|.+.....
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~------ 170 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSK------ 170 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCC-CCCTTCCCTTCCEEECCSSCCCEECH------
T ss_pred hhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCccccc-CcccccCCcccCEEEcccCcccccCh------
Confidence 99999999999999999998 55433799999999999999999852 22345558999999999888775433
Q ss_pred CCcccccEEecCCCCCCCCCCchhhcCCCCcc--EEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCC
Q 004005 179 APKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE--YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHK 256 (779)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 256 (779)
..+..+++|+ +|++++|.+.+..|..+ ....|++|++++|... +..+..+.
T Consensus 171 ----------------------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~ 223 (606)
T 3t6q_A 171 ----------------------EDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLK 223 (606)
T ss_dssp ----------------------HHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHHHTT
T ss_pred ----------------------hhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhH---HHHhhhcc
Confidence 2333444444 45555555554333332 2344555555554311 11111122
Q ss_pred c--cCEEEccCCcC--CCCCCccccccCC--CCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCC
Q 004005 257 R--LRQLDVSNNNI--RGHIPVKIGDVLP--SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330 (779)
Q Consensus 257 ~--L~~L~l~~n~i--~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 330 (779)
+ ++.+.+....- ...++...+..+. +++.+++++|.+++..+..|..+++|++|++++|.+. .+|..+ ..++
T Consensus 224 ~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~ 301 (606)
T 3t6q_A 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLS 301 (606)
T ss_dssp TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCT
T ss_pred ccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccc
Confidence 2 22222221100 0022222222222 6778888888887777777888888888888888877 676654 3577
Q ss_pred CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC-ccccCCCCCCEEEccCCCCCCCc--CccccCCCCCcEE
Q 004005 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYI 407 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L 407 (779)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 78888888887777666677777778888887777764443 34777777777777777776544 5566677777777
Q ss_pred EccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCC
Q 004005 408 IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487 (779)
Q Consensus 408 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 487 (779)
++++|.+.+..+..+..+++|++|++++|++. +..+...+..+++|+.|++++|.+.
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLK-----------------------VKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEE-----------------------CCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCC-----------------------CcccchhhhCcccCCEEECCCCccC
Confidence 77777776666666677777777777776665 3333444788999999999999999
Q ss_pred CccCccccCCCCCCEEEccCCccccc---ccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhh
Q 004005 488 GSIPDWVDGLSQLSHLILGHNNLEGE---VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF 564 (779)
Q Consensus 488 ~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (779)
+..|..+..+++|+.|++++|++++. .+..+..+++|+.|++++|.+++..|..|..++
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------ 500 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK------------------ 500 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT------------------
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc------------------
Confidence 88899999999999999999999863 235688999999999999999988887776654
Q ss_pred hhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCC
Q 004005 565 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 644 (779)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 644 (779)
+|++|++++|++++..|..+..+++| .|++++|++++..|..+.
T Consensus 501 -----------------------------------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 501 -----------------------------------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp -----------------------------------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred -----------------------------------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 79999999999999999999999999 999999999998898999
Q ss_pred CCCCCCEEECCCCcCCCCCc
Q 004005 645 NLKHVESLDLSNNKLNGKIP 664 (779)
Q Consensus 645 ~l~~L~~L~L~~N~l~~~~~ 664 (779)
.+++|++|++++|++.+..+
T Consensus 545 ~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHHTSSEEECTTCCEECSGG
T ss_pred cCCCCCEEeCCCCCccccCC
Confidence 99999999999999987655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-52 Score=472.52 Aligned_cols=553 Identities=20% Similarity=0.202 Sum_probs=334.3
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCC
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI 132 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L 132 (779)
+++++|++++|.+ .+..+.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|. .++++++|
T Consensus 32 ~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTC
T ss_pred CCcCEEECCCCCc----CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccC
Confidence 4566666666666 222333556666666666666666655555666666666666666666533343 56666666
Q ss_pred CEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEE
Q 004005 133 EELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 212 (779)
Q Consensus 133 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 212 (779)
++|++++|.+++. +...++++++|++|++++|.+.+ ..+|..++.+++|++|
T Consensus 107 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~---------------------------~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 107 ENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHS---------------------------CKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCC---------------------------CCCCGGGGTCTTCCEE
T ss_pred CEEEccCCccccc-cccccCCCCCCCEEeCCCCcccc---------------------------eechHhHhhcCCCCEE
Confidence 6666666665532 22235555555555555444331 1235556666666666
Q ss_pred EccCccCcccCChhhhhcCCC----CcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEEC
Q 004005 213 DLSHIKMNGEFPNWLLENNTK----LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN 288 (779)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l 288 (779)
++++|.+.+..+..+ +.+.+ +++|++++|.+.+..+..+... +|++|++++|.+.+.
T Consensus 159 ~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~----------------- 219 (606)
T 3vq2_A 159 DLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN----------------- 219 (606)
T ss_dssp ECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH-----------------
T ss_pred EccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh-----------------
Confidence 666666664433332 23332 2355565555554443333332 555555555544322
Q ss_pred CCCCCCcccCccccCCCCCCEEEccCCcCcc-----ccchhhhhCCC--CCCEEEc-cCcccCccCcccCCCCCCCCEEE
Q 004005 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTG-----EIPEHLAVGCV--NLQFLAL-SNNNLQGHLFSRNFNLTNLQWLQ 360 (779)
Q Consensus 289 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~~~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~ 360 (779)
..|..+..++.|+.+++..+.+.. .++...+.++. .++.+++ ..+.+.+..+. +..+++|+.|+
T Consensus 220 -------~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~ 291 (606)
T 3vq2_A 220 -------IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS 291 (606)
T ss_dssp -------HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred -------HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence 233334444444444433221110 11111111121 3445555 44555554444 66666777777
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCcc
Q 004005 361 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440 (779)
Q Consensus 361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (779)
+++|.+.. .| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|+..+.. .+..+++|++|++++|.+++
T Consensus 292 l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 77776653 33 566666777777777766 34553 3 6677777777776443222 45566777777777776654
Q ss_pred CC--CC-ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccC-ccccCCCCCCEEEccCCcccccccc
Q 004005 441 SL--PS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV 516 (779)
Q Consensus 441 ~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 516 (779)
.. +. ...+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+.
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 42 22 2235667777777766643 44 337888999999999999887766 6788899999999999999888888
Q ss_pred cccCCCCCCEEEccCCcCCC-CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005 517 QLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 595 (779)
Q Consensus 517 ~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (779)
.+..+++|++|++++|.+.+ .+|..+..++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------------------------------------------------- 473 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTT------------------------------------------------- 473 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------------------------------------
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCC-------------------------------------------------
Confidence 88899999999999998876 3565555443
Q ss_pred ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC-CCc
Q 004005 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLE 674 (779)
Q Consensus 596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~ 674 (779)
+|++|++++|++++..|..+.++++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|+
T Consensus 474 ----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 474 ----NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp ----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred ----CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 7999999999999888888999999999999999999888999999999999999999998 6676788886 699
Q ss_pred EEeccCCcCcccCCCCccccccCCcccccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 675 VFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC-GLPLPICRSPATMPEASIGNEQDDN 734 (779)
Q Consensus 675 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c-~~~l~~c~~~~~~~~~~~~~~~~~~ 734 (779)
+|++++|++.|.|+. .++..|.. .++... +.....|..|....++.+.+++...
T Consensus 549 ~l~l~~N~~~c~c~~--~~~~~~l~----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 549 FFNLTNNSVACICEH--QKFLQWVK----EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp EEECCSCCCCCSSTT--HHHHTTTT----TSSSSBSSGGGCCCC-----------------
T ss_pred EEEccCCCcccCCcc--HHHHHHHH----cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence 999999999998875 22222221 111111 1111248888888887777776554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=476.44 Aligned_cols=540 Identities=19% Similarity=0.190 Sum_probs=417.7
Q ss_pred cEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEE
Q 004005 56 KYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135 (779)
Q Consensus 56 ~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L 135 (779)
+..+.+++++ ..+|. -.++|++|+|++|.+++..|..|.++++|++|++++|...+.++...++++++|++|
T Consensus 7 ~~~dcs~~~L-----~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNL-----TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCS-----SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCC-----CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 4678888888 44554 347899999999999988899999999999999999977667855589999999999
Q ss_pred EccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEcc
Q 004005 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS 215 (779)
Q Consensus 136 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 215 (779)
++++|.+++. ....+.++++|++|++++|.+.+... ....+..+++|++|+++
T Consensus 79 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 79 DLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVL--------------------------KDGYFRNLKALTRLDLS 131 (844)
T ss_dssp ECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCS--------------------------TTCCCSSCSSCCEEEEE
T ss_pred ECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccc--------------------------cCccccccCCCCEEECC
Confidence 9999998754 33578888888888888776653211 01235667788888888
Q ss_pred CccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCC--CccCEEEccCCcCCCCCCccccccCC------CCcEEE
Q 004005 216 HIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSH--KRLRQLDVSNNNIRGHIPVKIGDVLP------SLYVFN 287 (779)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~~l~------~L~~L~ 287 (779)
+|.+.+..+...++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|+.|+
T Consensus 132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~ 210 (844)
T 3j0a_A 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILD 210 (844)
T ss_dssp SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEB
T ss_pred CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEe
Confidence 8888765554445788888888888888777666666555 67777777777776555544332 11 255555
Q ss_pred CCCCCCCcccCccccCC---CCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCC--CCCCEEEcc
Q 004005 288 NSMNALDGSIPSSFGNM---KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL--TNLQWLQLE 362 (779)
Q Consensus 288 l~~n~~~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~ 362 (779)
+++|.+++..+..+... ..++.+.++.+.+.. .+..+.+.......|.++ ++|+.|+++
T Consensus 211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----------------GFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----------------SSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred cCCCcCchhHHHHHHhhcCcccccceecccccccc----------------cccccccCCCChhhhhccccCCccEEECC
Confidence 55555544444433221 334444444322210 011233333444455544 789999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCC
Q 004005 363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 442 (779)
Q Consensus 363 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (779)
+|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..
T Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp TCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred CCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 99999888899999999999999999999888889999999999999999999888999999999999999999998877
Q ss_pred CCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccc-cccccC
Q 004005 443 PSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCE 520 (779)
Q Consensus 443 ~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~ 520 (779)
+..+. +++|+.|++++|.+.+ +..+++|+.|++++|+++. +|.. ..+++.|++++|++++.. +..+..
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred hhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhc
Confidence 77665 8899999999999853 3347899999999999984 4543 467999999999998643 233568
Q ss_pred CCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccC
Q 004005 521 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600 (779)
Q Consensus 521 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (779)
+++|+.|++++|++++..+.... ..+++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~----------------------------------------------------~~~~~ 452 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTP----------------------------------------------------SENPS 452 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSS----------------------------------------------------CSCTT
T ss_pred CCccceeeCCCCccccccccccc----------------------------------------------------ccCCc
Confidence 99999999999999865433111 01347
Q ss_pred cceEEccCCccc-----ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005 601 LSGLDLSCNKLI-----GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 675 (779)
Q Consensus 601 L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 675 (779)
|+.|++++|.+. +..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+. ++|+.
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 530 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI 530 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence 999999999997 34456789999999999999999999999999999999999999999987776665 89999
Q ss_pred EeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005 676 FSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714 (779)
Q Consensus 676 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 714 (779)
||+++|++++..|..+ ..+..+.+.+|||.|+|++.
T Consensus 531 L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 531 LDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp EEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred EECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 9999999999988754 47788899999999999864
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-50 Score=456.87 Aligned_cols=534 Identities=19% Similarity=0.185 Sum_probs=411.3
Q ss_pred CCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCC
Q 004005 54 SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133 (779)
Q Consensus 54 ~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~ 133 (779)
.-++++.+++.+ ..+|..+. ++|++|+|++|.+++..+..|+++++|++|++++|++. .++...|+++++|+
T Consensus 12 ~~~~~~c~~~~l-----~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 12 PNITYQCMDQKL-----SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLS 83 (606)
T ss_dssp TTTEEECTTSCC-----SSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred CCCceEccCCCc-----ccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcC
Confidence 346789988888 45555443 78999999999998877889999999999999999998 45443789999999
Q ss_pred EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD 213 (779)
Q Consensus 134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 213 (779)
+|++++|.+++. ....++++++|++|++++|.+... .+..++.+++|++|+
T Consensus 84 ~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~----------------------------~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 84 NLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASL----------------------------ESFPIGQLITLKKLN 134 (606)
T ss_dssp EEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCS----------------------------SSSCCTTCTTCCEEE
T ss_pred EeECCCCccccc-ChhhcCCcccCCEEEccCCccccc----------------------------cccccCCCCCCCEEe
Confidence 999999988753 234566666666666666654421 112234445555555
Q ss_pred ccCccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCC----CcEEEC
Q 004005 214 LSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS----LYVFNN 288 (779)
Q Consensus 214 l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l 288 (779)
+++|.+.+ .+|. .+..+++|++|++++|.+++..+..+.. +++ +.++++
T Consensus 135 L~~n~l~~~~lp~-------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l 188 (606)
T 3vq2_A 135 VAHNFIHSCKLPA-------------------------YFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDM 188 (606)
T ss_dssp CCSSCCCCCCCCG-------------------------GGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEEC
T ss_pred CCCCcccceechH-------------------------hHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeec
Confidence 55555543 2343 4444455555555555554322222221 222 346777
Q ss_pred CCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCc------cCcccCCCCC--CCCEEE
Q 004005 289 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG------HLFSRNFNLT--NLQWLQ 360 (779)
Q Consensus 289 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~--~L~~L~ 360 (779)
++|.+++..+..+... +|+.|++++|.+.+......+..++.++.+++..+.+.. .....+.++. .++.++
T Consensus 189 ~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 7777775555555544 899999999998755555566789999998886554332 1112222222 456677
Q ss_pred c-cCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005 361 L-EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 361 L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (779)
+ ..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSC
T ss_pred ccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCc
Confidence 7 66777777666 8999999999999999974 45 788999999999999999 4666 45 9999999999999665
Q ss_pred cCCCCccCcccccEEEccCccccccc--CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-c
Q 004005 440 GSLPSCFHPLSIKQVHLSKNMLHGQL--KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-V 516 (779)
Q Consensus 440 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 516 (779)
+.. ....+++|+.|++++|.+.+.. +. .+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..+ .
T Consensus 342 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 342 ISF-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEC-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cch-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh
Confidence 443 3446889999999999986542 33 38889999999999999985 66889999999999999999998776 6
Q ss_pred cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccc
Q 004005 517 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK 596 (779)
Q Consensus 517 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (779)
.+..+++|+.|++++|.+.+..|..+..++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------------------- 448 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLT-------------------------------------------------- 448 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCT--------------------------------------------------
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCC--------------------------------------------------
Confidence 789999999999999999988887776544
Q ss_pred cccCcceEEccCCcccc-cCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005 597 VLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 675 (779)
Q Consensus 597 ~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 675 (779)
+|++|++++|++++ ..|..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..|..+++|++
T Consensus 449 ---~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 449 ---SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp ---TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred ---CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 79999999999997 47888999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcCcccCCCCccccc-cCCcccccCCCCCCCCCCC
Q 004005 676 FSVAYNNLSGEIPEWKAQFA-TFNESSYEGNTFLCGLPLP 714 (779)
Q Consensus 676 L~l~~N~l~~~~p~~~~~~~-~~~~~~~~~n~~~c~~~l~ 714 (779)
||+++|+++ .+|..+..+. ++..+.+.+||+.|+|+..
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999 5666677776 5899999999999999864
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-46 Score=423.27 Aligned_cols=515 Identities=20% Similarity=0.239 Sum_probs=342.9
Q ss_pred CcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCE
Q 004005 55 LKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 134 (779)
Q Consensus 55 L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~ 134 (779)
.++.+.++.++ ..+|..+. +++++|++++|.+++..+.+|.++++|++|++++|++. .++...++++++|++
T Consensus 9 ~~~~~c~~~~l-----~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 9 NITYQCMELNF-----YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLST 80 (570)
T ss_dssp TTEEECCSSCC-----SSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred CcEEEeCCCCc-----cccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCE
Confidence 34566665555 34443332 46778888888777666667778888888888888777 454446777888888
Q ss_pred EEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEc
Q 004005 135 LMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDL 214 (779)
Q Consensus 135 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 214 (779)
|++++|.++. ++...+.++++|++|++++|.+.... +..++.+++|++|++
T Consensus 81 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~----------------------------~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 81 LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLE----------------------------NFPIGHLKTLKELNV 131 (570)
T ss_dssp EECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCST----------------------------TCSCTTCTTCCEEEC
T ss_pred EeCcCCcCCc-cCHhhhcCccccccccccccccccCC----------------------------CccccccccccEEec
Confidence 8888777664 33345666667776666666554211 112455667888888
Q ss_pred cCccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCcc----CEEEccCCcCCCCCCccccccCCCCcEEECC
Q 004005 215 SHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL----RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289 (779)
Q Consensus 215 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~ 289 (779)
++|.+.+ .+|..+ +++++|++|++++|.+.+..+..+..+++| ++|++++|.+.+..+ ..+... +|+.|+++
T Consensus 132 ~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~ 208 (570)
T 2z63_A 132 AHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLR 208 (570)
T ss_dssp CSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEE
T ss_pred CCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecc
Confidence 8887765 356554 567777777777777766555555555555 566666666653222 222212 45555555
Q ss_pred CCCCC-cccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCC--CCCEEEccCC-c
Q 004005 290 MNALD-GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT--NLQWLQLEGN-R 365 (779)
Q Consensus 290 ~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n-~ 365 (779)
+|... ...+..+..++.++...+....+.. . ..+.......+..++ .++.++++++ .
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~----------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------E----------GNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------C----------SSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred cccccccchhhhhcCccccceeeeccccccC---------c----------hhhhhcchhhhccccccchhhhhhhcchh
Confidence 54322 1223334444444444332221110 0 000111111122222 2344555555 4
Q ss_pred CCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCc
Q 004005 366 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC 445 (779)
Q Consensus 366 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 445 (779)
+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+.
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence 44455555666666666666666665 355555555 6666666666665 2332 3556666666666666544433
Q ss_pred cCcccccEEEccCccccccc--CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-ccccCCC
Q 004005 446 FHPLSIKQVHLSKNMLHGQL--KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELN 522 (779)
Q Consensus 446 ~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~ 522 (779)
..+++|+.|++++|.+.+.. +. .+.++++|++|++++|.+.+..+. +..+++|+.|++++|.+++..+ ..+..++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccCccccccc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 44566777777776664432 22 377889999999999999865544 8899999999999999987655 5688999
Q ss_pred CCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcc
Q 004005 523 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 602 (779)
Q Consensus 523 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 602 (779)
+|++|++++|.+.+..|..+..++ +|+
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~ 448 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLS-----------------------------------------------------SLE 448 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCT-----------------------------------------------------TCC
T ss_pred CCCEEeCcCCcccccchhhhhcCC-----------------------------------------------------cCc
Confidence 999999999999887777665543 799
Q ss_pred eEEccCCccc-ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005 603 GLDLSCNKLI-GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681 (779)
Q Consensus 603 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 681 (779)
+|++++|++. +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999997 568889999999999999999999888999999999999999999999888888999999999999999
Q ss_pred cCcccCCC
Q 004005 682 NLSGEIPE 689 (779)
Q Consensus 682 ~l~~~~p~ 689 (779)
+++|.||.
T Consensus 529 ~~~~~~~~ 536 (570)
T 2z63_A 529 PWDCSCPR 536 (570)
T ss_dssp CBCCCTTT
T ss_pred cccCCCcc
Confidence 99999986
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.6e-45 Score=408.62 Aligned_cols=485 Identities=19% Similarity=0.191 Sum_probs=312.3
Q ss_pred CCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCC
Q 004005 54 SLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 133 (779)
Q Consensus 54 ~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~ 133 (779)
...+.+.+++.+ ..+|+.+. ++|++|++++|++++..|..|.++++|++|++++|++.+ ++...++++++|+
T Consensus 6 ~~~~c~~~~~~l-----~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~ 77 (549)
T 2z81_A 6 ASGVCDGRSRSF-----TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLE 77 (549)
T ss_dssp TTSEEECTTSCC-----SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCC
T ss_pred CCceEECCCCcc-----ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCC
Confidence 334456666666 45554443 677778888777776666777777777777777777763 3333667777777
Q ss_pred EEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEE
Q 004005 134 ELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD 213 (779)
Q Consensus 134 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 213 (779)
+|++++|.+++. + +..++.+++|++|+
T Consensus 78 ~L~Ls~n~l~~~-~----------------------------------------------------~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 78 HLDLSDNHLSSL-S----------------------------------------------------SSWFGPLSSLKYLN 104 (549)
T ss_dssp EEECTTSCCCSC-C----------------------------------------------------HHHHTTCTTCCEEE
T ss_pred EEECCCCccCcc-C----------------------------------------------------HHHhccCCCCcEEE
Confidence 777776665431 1 12233334444444
Q ss_pred ccCccCcc-cCChhhhhcCCCCcEEEcCCCcCcC-CCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCC
Q 004005 214 LSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 291 (779)
Q Consensus 214 l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n 291 (779)
+++|.+.+ ..|.. ++++++|++|++++|...+ ..+..+..++ +|++|++++|
T Consensus 105 Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-------------------------~L~~L~L~~n 158 (549)
T 2z81_A 105 LMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLT-------------------------SLNELEIKAL 158 (549)
T ss_dssp CTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCC-------------------------EEEEEEEEET
T ss_pred CCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhccc-------------------------ccCeeeccCC
Confidence 44444432 11222 2455555666655555222 2223444444 4555555555
Q ss_pred CCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccC---cccCCCCCCCCEEEccCCcCCc
Q 004005 292 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL---FSRNFNLTNLQWLQLEGNRFVG 368 (779)
Q Consensus 292 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~ 368 (779)
.+++..|..+..+++|++|++++|.+. .++..++..+++|++|++++|.+.+.. ......+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 555555555666666666666666665 555555555666666666666665432 1122345666777776666554
Q ss_pred cCC----ccccCCCCCCEEEccCCCCCCCc------CccccCCCCCcEEEccCCcccCCc-----CcccCCCCCCcEEEc
Q 004005 369 EIP----QSLSKCSSLEGLYLNNNSLLGKI------PRWLGNLTRLQYIIMPNNHLEGPI-----PVEFCQLDSLQILDI 433 (779)
Q Consensus 369 ~~~----~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l 433 (779)
..+ ..+..+++|+.+++++|.+.+.. ...+..+.+++.+.+.++.+.... +..+...++|+.|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 322 23345566677777666554321 123455666777777766654321 111223456777777
Q ss_pred cCCcCccCCCCcc-CcccccEEEccCcccccccCc--ccccCCCCccEEeccCccCCCccC--ccccCCCCCCEEEccCC
Q 004005 434 SDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKR--GTFFNCSSLVTLDLSYNRLNGSIP--DWVDGLSQLSHLILGHN 508 (779)
Q Consensus 434 ~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n 508 (779)
++|.+.......+ .+++|+.|++++|.+.+.++. ..+..+++|++|++++|++++..+ ..+..+++|+.|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 7777764333332 367777777777777665432 236778999999999999986532 45788999999999999
Q ss_pred cccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeecc
Q 004005 509 NLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKN 588 (779)
Q Consensus 509 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (779)
+++ .+|..+..+++|++|++++|.+++.. ..+
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~---------------------------------------------- 429 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI---------------------------------------------- 429 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS----------------------------------------------
T ss_pred CCc-cCChhhcccccccEEECCCCCccccc-chh----------------------------------------------
Confidence 998 56777888899999999999886422 111
Q ss_pred ceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCccccc
Q 004005 589 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 668 (779)
Q Consensus 589 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 668 (779)
+++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..+.
T Consensus 430 ---------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 430 ---------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp ---------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred ---------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 236899999999998642 57889999999999998 5565 46789999999999999988888899
Q ss_pred CCCCCcEEeccCCcCcccCCC
Q 004005 669 ELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 669 ~l~~L~~L~l~~N~l~~~~p~ 689 (779)
.+++|+.|++++|+++|.||.
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHHH
T ss_pred cCcccCEEEecCCCccCCCcc
Confidence 999999999999999999883
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-44 Score=406.62 Aligned_cols=465 Identities=21% Similarity=0.198 Sum_probs=387.0
Q ss_pred cccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEE
Q 004005 183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLD 262 (779)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 262 (779)
.++.|++ +.+.+++..+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 7999999 667777777788999999999999999988544444 57899999999999999988888999999999999
Q ss_pred ccCCcCCCCCCccccccCCCCcEEECCCCCCCc-ccCccccCCCCCCEEEccCCcCccccchhhhhCCCCC----CEEEc
Q 004005 263 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL----QFLAL 337 (779)
Q Consensus 263 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L----~~L~l 337 (779)
+++|.++ .++...+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+ ++...+..+++| +.+++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhccc
Confidence 9999998 5555445558999999999999987 468999999999999999999984 443333457777 89999
Q ss_pred cCcccCccCcccCCCCCCCCEEEccCCcCCc-cCCccccCCCC--------------------------------CCEEE
Q 004005 338 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCSS--------------------------------LEGLY 384 (779)
Q Consensus 338 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~--------------------------------L~~L~ 384 (779)
++|.+.+..+..+... +|+.|++++|.... ..+..+..++. ++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999998887777655 79999998874321 01111222222 34555
Q ss_pred ccCC-CCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccc
Q 004005 385 LNNN-SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 463 (779)
Q Consensus 385 l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 463 (779)
+.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+... +. ..+++|+.|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~-~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT-LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB-CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc-ccccccCEEeCcCCcccc
Confidence 5555 555667778888999999999999988 567778888 999999999998843 33 467899999999999876
Q ss_pred ccCcccccCCCCccEEeccCccCCCcc--CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC-c
Q 004005 464 QLKRGTFFNCSSLVTLDLSYNRLNGSI--PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP-P 540 (779)
Q Consensus 464 ~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~ 540 (779)
..+. ..+++|++|++++|.+++.. +..+.++++|+.|++++|.+++..+. +..+++|+.|++++|.+.+..+ .
T Consensus 340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 5554 57899999999999998654 67788999999999999999866554 8999999999999999887655 3
Q ss_pred ccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccccc
Q 004005 541 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 620 (779)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 620 (779)
.+.. +++|++|++++|++.+..|..+.
T Consensus 416 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 416 VFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp TTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTTT
T ss_pred hhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhhh
Confidence 3433 34799999999999998999999
Q ss_pred CCCCCCEEECcccccc-cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCc
Q 004005 621 NLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE 699 (779)
Q Consensus 621 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~ 699 (779)
++++|++|++++|+++ +..|..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+.++..
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999998 578899999999999999999999998999999999999999999999988888889999999
Q ss_pred ccccCCCCCCCCCC
Q 004005 700 SSYEGNTFLCGLPL 713 (779)
Q Consensus 700 ~~~~~n~~~c~~~l 713 (779)
+.+.+|++.|+|+.
T Consensus 523 L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 523 IWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCBCCCTTT
T ss_pred EEecCCcccCCCcc
Confidence 99999999999875
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-42 Score=398.96 Aligned_cols=560 Identities=21% Similarity=0.207 Sum_probs=303.3
Q ss_pred CCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcc-cccccCCCCCCEEeccCCCCCCCcc
Q 004005 20 SLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTL-DQGLCSLVHLQELYIASNDLRGSLP 98 (779)
Q Consensus 20 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~l~~~~~ 98 (779)
++++|||++|. +....+.+|. .+++|++|+|++|++ ..+ +.+|.++++|++|+|++|++++..+
T Consensus 53 ~~~~LdLs~N~---------i~~l~~~~f~-~l~~L~~L~Ls~N~i-----~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDLSFNP---------LRHLGSYSFF-SFPELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TCCEEECTTSC---------CCEECTTTTT-TCTTCCEEECTTCCC-----CEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCEEEeeCCC---------CCCCCHHHHh-CCCCCCEEECCCCcC-----CCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 57777777776 5544445566 777777777777776 223 3356677777777777777765555
Q ss_pred hhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccccc
Q 004005 99 WCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI 178 (779)
Q Consensus 99 ~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 178 (779)
..|.++++|++|++++|++. .++...|+++++|++|++++|.+++......+..+++|++|++++|++.+.....+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 66777777777777777776 45554677777777777777776543333456667777777777777665544332222
Q ss_pred CCcc-cccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCc
Q 004005 179 APKF-QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR 257 (779)
Q Consensus 179 ~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 257 (779)
.... ....+++ ..+.+....+.. .....++.+++.++......+...+..+..++...+..+......
T Consensus 197 ~~l~~~~~~~~l-s~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~--------- 265 (635)
T 4g8a_A 197 HQMPLLNLSLDL-SLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG--------- 265 (635)
T ss_dssp HTCTTCCCEEEC-TTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC---------
T ss_pred hhhhhhhhhhhc-ccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc---------
Confidence 2111 2233444 222222222211 122234445555444333333333334444444333221111000
Q ss_pred cCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCC---cccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCE
Q 004005 258 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD---GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 334 (779)
Q Consensus 258 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 334 (779)
.+. ............+....+..+... ...+..+..+.+++.+.+.++.+. .++
T Consensus 266 ---------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~------------ 322 (635)
T 4g8a_A 266 ---------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK------------ 322 (635)
T ss_dssp ---------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG------------
T ss_pred ---------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc------------
Confidence 000 000000111122222222221111 111222333344444444444443 222
Q ss_pred EEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcc
Q 004005 335 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414 (779)
Q Consensus 335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 414 (779)
.+.....++.|++.+|.+....+. .++.|+.+++..|..... .....+++|+.++++.|.+
T Consensus 323 --------------~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 323 --------------DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp --------------GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCC
T ss_pred --------------ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhcccc
Confidence 122334444555554444432221 233455555555544321 1223455556666655554
Q ss_pred cC--CcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCcc-C
Q 004005 415 EG--PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI-P 491 (779)
Q Consensus 415 ~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~-~ 491 (779)
.. ..+..+..+.+|+.+++..+........ +..+++|+.++++.+...... +
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-------------------------~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-------------------------FLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEEECSC-------------------------CTTCTTCCEEECTTSEEESTTSS
T ss_pred ccccccccchhhhhhhhhhhcccccccccccc-------------------------ccccccccchhhhhccccccccc
Confidence 32 2233444566666776666655432222 333444444444444433222 2
Q ss_pred ccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCC-CCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005 492 DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570 (779)
Q Consensus 492 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (779)
..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..+
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l------------------------- 493 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL------------------------- 493 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-------------------------
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc-------------------------
Confidence 23444555555555555555555555555555666666555432 2233333332
Q ss_pred cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCC
Q 004005 571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650 (779)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 650 (779)
++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+
T Consensus 494 ----------------------------~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 494 ----------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp ----------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ----------------------------cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 3678888888888888888899999999999999999988888999999999
Q ss_pred EEECCCCcCCCCCcccccCC-CCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 651 SLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGN 729 (779)
Q Consensus 651 ~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~ 729 (779)
+|+|++|++++..|..|..+ ++|++|++++|+++|.|.. .++..|..- .....-+.....|..|....++++.+
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~--~~~~~wl~~---~~~~~~~~~~~~C~~P~~~~g~~l~~ 620 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH--QSFLQWIKD---QRQLLVEVERMECATPSDKQGMPVLS 620 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG--HHHHHHHHH---TTTTBSCGGGCBBCSSTTTTTCBGGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc--HHHHHHHHh---CCCccCCCCCceeCCchHHCCCEeee
Confidence 99999999999999999887 6899999999999999863 233322111 11111111122499999999988777
Q ss_pred CC
Q 004005 730 EQ 731 (779)
Q Consensus 730 ~~ 731 (779)
++
T Consensus 621 ~~ 622 (635)
T 4g8a_A 621 LN 622 (635)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.4e-43 Score=394.30 Aligned_cols=466 Identities=17% Similarity=0.165 Sum_probs=308.8
Q ss_pred CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005 19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP 98 (779)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~ 98 (779)
++|++|++++|. +.+..+..+. .+++|++|++++|.+ .+..|++|.++++|++|++++|.+.+..+
T Consensus 26 ~~L~~L~Ls~n~---------l~~~~~~~~~-~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 26 AAMKSLDLSFNK---------ITYIGHGDLR-ACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TTCCEEECCSSC---------CCEECSSTTS-SCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCccEEECcCCc---------cCccChhhhh-cCCcccEEECCCCCc----CccChhhccccccCCEEECCCCccCccCH
Confidence 355555555555 3433344444 555555555555555 22223445555555555555555554444
Q ss_pred hhhcCCCCCCEEEcCCCcccC-CCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccc
Q 004005 99 WCMANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSL 177 (779)
Q Consensus 99 ~~~~~l~~L~~L~L~~n~l~~-~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 177 (779)
..|+++++|++|++++|++.+ .+|. .++++++|++|++++|.+.+.++...+.++++|++|++++|.+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l---------- 160 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL---------- 160 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC----------
T ss_pred HHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc----------
Confidence 445555555555555555542 1222 4555555555555555433333333444555555555554444
Q ss_pred cCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCC---CcCcCC
Q 004005 178 IAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPF---RLPIHS 254 (779)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 254 (779)
++..|..+..+++|++|+++.+... .+|.++++.+++|++|++++|.+.+.. ......
T Consensus 161 ------------------~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 161 ------------------RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp ------------------CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred ------------------cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 4445566667777888888777765 456666667788888888888777642 112345
Q ss_pred CCccCEEEccCCcCCCCCCcccc---ccCCCCcEEECCCCCCCccc------CccccCCCCCCEEEccCCcCccc-----
Q 004005 255 HKRLRQLDVSNNNIRGHIPVKIG---DVLPSLYVFNNSMNALDGSI------PSSFGNMKFLQILDLSNNHLTGE----- 320 (779)
Q Consensus 255 ~~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~Ls~n~i~~~----- 320 (779)
+++|++|++++|.+++..+..+. ..+++++.+++++|.+.+.. ...+..+++|+.|++.++.+...
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 67788888888877644333221 23567888888887765421 12356677888888888876521
Q ss_pred cchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCC---ccccCCCCCCEEEccCCCCCCCcC--
Q 004005 321 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP---QSLSKCSSLEGLYLNNNSLLGKIP-- 395 (779)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~-- 395 (779)
++ ..+...++|+.|++++|.+.......+..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..+
T Consensus 302 l~-~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 302 LS-TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CC-HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred ch-hhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence 11 122335788888888888875443333578888899998888886543 236778889999999988875432
Q ss_pred ccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCC
Q 004005 396 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 475 (779)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 475 (779)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++...... +++|+.|++++|.+.+. ...+++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~-----~~~l~~ 452 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF-----SLFLPR 452 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCC-----CCCCTT
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhh-----cccCCh
Confidence 45778888999999999888 56777888889999999999887543322 36899999999988653 246899
Q ss_pred ccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005 476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 539 (779)
Q Consensus 476 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 539 (779)
|++|++++|+++ .+|. ...+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999998 5565 4578999999999999998888889999999999999999986554
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-44 Score=398.59 Aligned_cols=463 Identities=19% Similarity=0.157 Sum_probs=296.9
Q ss_pred cEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEE
Q 004005 56 KYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 135 (779)
Q Consensus 56 ~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L 135 (779)
++||+++|++ ..+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++.+..|. .++++++|++|
T Consensus 3 ~~l~ls~n~l-----~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGL-----IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCC-----SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEE
T ss_pred ceEecCCCCc-----cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEE
Confidence 5788888888 35665554 7888888888888877777888888888888888888743344 68888888888
Q ss_pred EccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccEEEcc
Q 004005 136 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLS 215 (779)
Q Consensus 136 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 215 (779)
++++|.++. ++. . .+++|++|+++
T Consensus 75 ~Ls~N~l~~-lp~-----------------------------------------------------~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 75 DLSHNKLVK-ISC-----------------------------------------------------H--PTVNLKHLDLS 98 (520)
T ss_dssp ECCSSCCCE-EEC-----------------------------------------------------C--CCCCCSEEECC
T ss_pred ecCCCceee-cCc-----------------------------------------------------c--ccCCccEEecc
Confidence 888876652 111 0 23466777777
Q ss_pred CccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCcc--CEEEccCCcC--CCCCCccccccCCCCcEEECCC
Q 004005 216 HIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSM 290 (779)
Q Consensus 216 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~l~~ 290 (779)
+|.+.+ .+|..+ +.+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+...-.....+++++
T Consensus 99 ~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 99 FNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp SSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred CCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 777664 355554 688889999998888775 345555666 8888888777 5444544332111223445555
Q ss_pred CCCCcccCc-cccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCcc
Q 004005 291 NALDGSIPS-SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE 369 (779)
Q Consensus 291 n~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 369 (779)
|.+.+.++. .+..+++|+.+++++|....... .+.+..+ .+..+++|+.|++++|.+.+.
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------YFLSILA-KLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHH
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccc------------------eeecchh-hhccccchhhccccccccCHH
Confidence 554443332 34455555555555554100000 0111111 233444444444444443321
Q ss_pred CCccc---cCCCCCCEEEccCCCCCCCcCccc-----cCCCCCcEEEccCCcccCCcC-cccCCC---CCCcEEEccCCc
Q 004005 370 IPQSL---SKCSSLEGLYLNNNSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGPIP-VEFCQL---DSLQILDISDNN 437 (779)
Q Consensus 370 ~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~ 437 (779)
.+..+ ...++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 11100 012344444444444443444433 4444555555555444 122 222211 345555555554
Q ss_pred CccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccc--ccc
Q 004005 438 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVS 515 (779)
Q Consensus 438 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~ 515 (779)
+.. .. .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ ..|
T Consensus 314 l~~-----------------------~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 314 MVH-----------------------ML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp CCC-----------------------CC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred ccc-----------------------cc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 431 11 02467788888888888887778888888889999999888886 445
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCc-ccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeec
Q 004005 516 VQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 594 (779)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (779)
..+..+++|++|++++|.+.+.+|. .+..
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------------------------------------------------- 397 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSW-------------------------------------------------- 397 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------------------------------------------
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhcc--------------------------------------------------
Confidence 6688889999999999988764443 2332
Q ss_pred cccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCc
Q 004005 595 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 674 (779)
Q Consensus 595 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 674 (779)
+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+
T Consensus 398 ---l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 398 ---TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp ---CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ---CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 23789999999999877777665 79999999999999 6777777999999999999999954444588999999
Q ss_pred EEeccCCcCcccCCC
Q 004005 675 VFSVAYNNLSGEIPE 689 (779)
Q Consensus 675 ~L~l~~N~l~~~~p~ 689 (779)
+|++++|+++|.|+.
T Consensus 472 ~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 472 KIWLHTNPWDCSCPR 486 (520)
T ss_dssp EEECCSSCBCCCHHH
T ss_pred EEECcCCCCcccCCc
Confidence 999999999998873
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5e-42 Score=393.68 Aligned_cols=279 Identities=22% Similarity=0.235 Sum_probs=205.8
Q ss_pred cCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEE
Q 004005 375 SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQV 454 (779)
Q Consensus 375 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 454 (779)
..+.+++.+.+.++.+... ..+....+++.|++.+|.+....+ ..++.|+.+++..|..... .....+++|+.+
T Consensus 303 ~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L 376 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFL 376 (635)
T ss_dssp GGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB-CCCCBCTTCCEE
T ss_pred hhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC-cccccccccccc
Confidence 3344455555555444322 123334455555555555443222 1234455555555544322 222234555555
Q ss_pred EccCccccc--ccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccc-cccccCCCCCCEEEccC
Q 004005 455 HLSKNMLHG--QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQLLDLSN 531 (779)
Q Consensus 455 ~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~ 531 (779)
+++.|.+.. ..+. .+..+.+|+.+++..+.+.. .+..+..+++|+.+++.++...... ...+..+++++.+++++
T Consensus 377 ~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 377 DLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp ECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred hhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 555555432 1222 25567899999999998874 4566888999999999998876544 45678899999999999
Q ss_pred CcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcc
Q 004005 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 611 (779)
Q Consensus 532 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 611 (779)
|.+.+..+..+...+ .++.|++++|++
T Consensus 455 n~l~~~~~~~~~~~~-----------------------------------------------------~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 455 THTRVAFNGIFNGLS-----------------------------------------------------SLEVLKMAGNSF 481 (635)
T ss_dssp SCCEECCTTTTTTCT-----------------------------------------------------TCCEEECTTCEE
T ss_pred cccccccccccccch-----------------------------------------------------hhhhhhhhhccc
Confidence 999877776665543 799999999985
Q ss_pred c-ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCC
Q 004005 612 I-GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690 (779)
Q Consensus 612 ~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 690 (779)
. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++||+++|++++..|..
T Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 4 457788999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc-ccCCcccccCCCCCCCCCCC
Q 004005 691 KAQF-ATFNESSYEGNTFLCGLPLP 714 (779)
Q Consensus 691 ~~~~-~~~~~~~~~~n~~~c~~~l~ 714 (779)
+..+ .++..+.+.+|||.|+|.+.
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred HHhhhCcCCEEEeeCCCCcccCCcH
Confidence 8777 67899999999999999753
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-44 Score=408.01 Aligned_cols=371 Identities=20% Similarity=0.249 Sum_probs=248.6
Q ss_pred CCcCcCCCCcCcCCCCccCEEEccCCcCCCC-----------------CCcccc-ccCCCCcEEECCCCCCCcccCcccc
Q 004005 241 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH-----------------IPVKIG-DVLPSLYVFNNSMNALDGSIPSSFG 302 (779)
Q Consensus 241 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-----------------~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 302 (779)
.|.+++ +|..+..+++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 355666 566677777777777777777753 666655 1267777777777777777777777
Q ss_pred CCCCCCEEEccCCc-Ccc-ccchhhhh-----CCCCCCEEEccCcccCccCcc--cCCCCCCCCEEEccCCcCCccCCcc
Q 004005 303 NMKFLQILDLSNNH-LTG-EIPEHLAV-----GCVNLQFLALSNNNLQGHLFS--RNFNLTNLQWLQLEGNRFVGEIPQS 373 (779)
Q Consensus 303 ~l~~L~~L~Ls~n~-i~~-~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~ 373 (779)
++++|++|++++|. +++ .+|..+.. .+++|++|++++|.+. ..+. .+..+++|++|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 77788888888777 765 56665543 1367777777777776 4444 56667777777777777765666 6
Q ss_pred ccCCCCCCEEEccCCCCCCCcCccccCCCC-CcEEEccCCcccCCcCcccCCCC--CCcEEEccCCcCccCCCCccCccc
Q 004005 374 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTR-LQYIIMPNNHLEGPIPVEFCQLD--SLQILDISDNNISGSLPSCFHPLS 450 (779)
Q Consensus 374 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~ 450 (779)
+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+.+..|..+..
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-- 424 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-- 424 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT--
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc--
Confidence 666667777777777666 55555666666 777777776666 4555554433 6666666666666544432210
Q ss_pred ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCC-------CC
Q 004005 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL-------NQ 523 (779)
Q Consensus 451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~ 523 (779)
.... ...+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+... ++
T Consensus 425 --------------~~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 425 --------------LDPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp --------------TCSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred --------------cccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 0000 1145677777777777775444455667777777777777774333333322 27
Q ss_pred CCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005 524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603 (779)
Q Consensus 524 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 603 (779)
|+.|++++|+++ .+|..+.. ..+++|+.
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~---------------------------------------------------~~l~~L~~ 517 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRA---------------------------------------------------TTLPYLVG 517 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGST---------------------------------------------------TTCTTCCE
T ss_pred ccEEECcCCcCC-ccChhhhh---------------------------------------------------ccCCCcCE
Confidence 888888888776 34443320 01236888
Q ss_pred EEccCCcccccCcccccCCCCCCEEEC------cccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005 604 LDLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 677 (779)
Q Consensus 604 L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 677 (779)
|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.||
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~ 593 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD 593 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence 8888888876 7777778888888888 56778888899999999999999999999 46777655 7899999
Q ss_pred ccCCcCcccCCC
Q 004005 678 VAYNNLSGEIPE 689 (779)
Q Consensus 678 l~~N~l~~~~p~ 689 (779)
+++|++++....
T Consensus 594 Ls~N~l~~~~~~ 605 (636)
T 4eco_A 594 IKDNPNISIDLS 605 (636)
T ss_dssp CCSCTTCEEECT
T ss_pred CcCCCCccccHH
Confidence 999988865443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.2e-44 Score=404.33 Aligned_cols=444 Identities=18% Similarity=0.210 Sum_probs=349.2
Q ss_pred CccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCc------C------CCCcCcCCCCccCEEEccCCcCCCCCCcc
Q 004005 208 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA------G------PFRLPIHSHKRLRQLDVSNNNIRGHIPVK 275 (779)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 275 (779)
+++.|+++++.+.|.+|..+ +++++|++|++++|.+. + ..+.. .+..|+ ++++++.+.+.++..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~--~~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDE--QKQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH--HHHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHH--HHHHHH-hhHHHhhhccCchhh
Confidence 56777777777777777664 57777777777777541 1 01111 123344 555555554444443
Q ss_pred ccccCC------------------CCcEEECC--CCCCCcccCccccCCCCCCEEEccCCcCccc---------------
Q 004005 276 IGDVLP------------------SLYVFNNS--MNALDGSIPSSFGNMKFLQILDLSNNHLTGE--------------- 320 (779)
Q Consensus 276 ~~~~l~------------------~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------------- 320 (779)
+...+. .++.+.+. .|.+++ +|..++++++|++|++++|.+.+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 332111 12222222 567777 899999999999999999999864
Q ss_pred --cchhhh-hCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCc-CCc-cCCccccCC------CCCCEEEccCCC
Q 004005 321 --IPEHLA-VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR-FVG-EIPQSLSKC------SSLEGLYLNNNS 389 (779)
Q Consensus 321 --~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~ 389 (779)
+|..+. ..+++|++|++++|.+.+..+..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 777654 258999999999999998889999999999999999998 887 677777665 899999999999
Q ss_pred CCCCcCc--cccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCccc-ccEEEccCcccccccC
Q 004005 390 LLGKIPR--WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLK 466 (779)
Q Consensus 390 ~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~ 466 (779)
+. .+|. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|++.........+++ |+.|++++|.+. .+|
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 98 7777 89999999999999999997788 888999999999999999855445455777 999999999987 677
Q ss_pred cccccCCC--CccEEeccCccCCCccCcccc-------CCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC
Q 004005 467 RGTFFNCS--SLVTLDLSYNRLNGSIPDWVD-------GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 537 (779)
Q Consensus 467 ~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 537 (779)
.. +..++ +|+.|++++|.+.+..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|.++..
T Consensus 394 ~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 394 NI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp SC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 64 55544 899999999999998888888 788999999999999966566677899999999999999843
Q ss_pred CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcc
Q 004005 538 IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP 617 (779)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 617 (779)
.+..+.... .....+++|++|++++|+++ .+|.
T Consensus 473 ~~~~~~~~~----------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 473 PKNSLKDEN----------------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CSSSSEETT----------------------------------------------EECTTGGGCCEEECCSSCCC-BCCG
T ss_pred CHHHhcccc----------------------------------------------ccccccCCccEEECcCCcCC-ccCh
Confidence 333332211 00012347999999999999 6888
Q ss_pred ccc--CCCCCCEEECcccccccCCCCCCCCCCCCCEEEC------CCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 618 QIG--NLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 618 ~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
.+. .+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 886 99999999999999997 8889999999999999 56888899999999999999999999999 57787
Q ss_pred CccccccCCcccccCCCCCCCC
Q 004005 690 WKAQFATFNESSYEGNTFLCGL 711 (779)
Q Consensus 690 ~~~~~~~~~~~~~~~n~~~c~~ 711 (779)
.+. .++..+.+.+|++.|-.
T Consensus 584 ~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCC--TTCCEEECCSCTTCEEE
T ss_pred hHh--CcCCEEECcCCCCcccc
Confidence 544 78899999999988754
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-42 Score=394.90 Aligned_cols=441 Identities=20% Similarity=0.237 Sum_probs=338.2
Q ss_pred CCccEEEccCccCcccCChhhhhcCCCCcEEEc-CCCcCcCCCCcCc---------------------------------
Q 004005 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFL-VNDSLAGPFRLPI--------------------------------- 252 (779)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~--------------------------------- 252 (779)
.+++.|+|+++.+.|.+|..+ +++++|++|+| ++|.+.|..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 468888888888888888775 68888888888 7776554321110
Q ss_pred ------------------CCCCccCEEEccC--CcCCCCCCccccccCCCCcEEECCCCCCCc-----------------
Q 004005 253 ------------------HSHKRLRQLDVSN--NNIRGHIPVKIGDVLPSLYVFNNSMNALDG----------------- 295 (779)
Q Consensus 253 ------------------~~~~~L~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----------------- 295 (779)
.....++.+.+.. |.+++ +|..+.. +++|++|++++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 1111222333332 56664 7776655 7889999999998887
Q ss_pred ccCcccc--CCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcc-cCc-cCcccC-------CCCCCCCEEEccCC
Q 004005 296 SIPSSFG--NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN-LQG-HLFSRN-------FNLTNLQWLQLEGN 364 (779)
Q Consensus 296 ~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~-------~~l~~L~~L~L~~n 364 (779)
.+|..++ ++++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +.+ ..|..+ ..+++|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3788877 899999999999988878886554 58999999999997 776 455433 34569999999999
Q ss_pred cCCccCCc--cccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCC-CcEEEccCCcCccC
Q 004005 365 RFVGEIPQ--SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS-LQILDISDNNISGS 441 (779)
Q Consensus 365 ~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~ 441 (779)
.+. .+|. .+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|++. .
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 998 6777 8889999999999999988 666 7888999999999999988 77778888888 999999999988 4
Q ss_pred CCCccC-c--ccccEEEccCcccccccCccc--cc--CCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccc
Q 004005 442 LPSCFH-P--LSIKQVHLSKNMLHGQLKRGT--FF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 514 (779)
Q Consensus 442 ~~~~~~-~--~~L~~L~l~~n~~~~~~~~~~--~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 514 (779)
+|..+. . ++|+.|++++|.+.+.++... +. .+++|+.|++++|.++...+..+..+++|+.|++++|+++...
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 555544 2 348999999999877655321 12 4468999999999999544444568999999999999998443
Q ss_pred cccccC-------CCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeec
Q 004005 515 SVQLCE-------LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTK 587 (779)
Q Consensus 515 ~~~l~~-------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (779)
...+.. +++|+.|++++|+++ .+|..+..
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------- 749 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------- 749 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------------------------------------------
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------------------------------------------
Confidence 333332 238999999999998 45554430
Q ss_pred cceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc------cccccCCCCCCCCCCCCCEEECCCCcCCC
Q 004005 588 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGSIPSTFSNLKHVESLDLSNNKLNG 661 (779)
Q Consensus 588 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 661 (779)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|++|+|++|++ +
T Consensus 750 --------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 750 --------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp --------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred --------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 013479999999999996 788899999999999976 788889999999999999999999999 5
Q ss_pred CCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCC--CCC
Q 004005 662 KIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC--GLP 712 (779)
Q Consensus 662 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c--~~~ 712 (779)
.+|..+. ++|+.||+++|++....+..+..........+.+|++.+ +|+
T Consensus 820 ~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 820 KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 7887765 699999999999987777666665555666677776655 554
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-41 Score=391.38 Aligned_cols=350 Identities=20% Similarity=0.236 Sum_probs=222.0
Q ss_pred CCcCcC--CCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCC-CCc-ccCccccCC-------CCCCEEEccCCc
Q 004005 248 FRLPIH--SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA-LDG-SIPSSFGNM-------KFLQILDLSNNH 316 (779)
Q Consensus 248 ~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l-------~~L~~L~Ls~n~ 316 (779)
+|..+. .+++|++|++++|.+.+.+|..+.. +++|+.|++++|+ +++ .+|..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 555555 6677777777777666666655544 6677777777776 665 566544433 477777777777
Q ss_pred Cccccch-hhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCC-CCEEEccCCCCCCCc
Q 004005 317 LTGEIPE-HLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS-LEGLYLNNNSLLGKI 394 (779)
Q Consensus 317 i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~ 394 (779)
+. .+|. ..+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 77 6766 23345777777777777777 344 6777777888888887777 66666777777 888888888777 55
Q ss_pred CccccCCCC--CcEEEccCCcccCCcCcc---cC--CCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCc
Q 004005 395 PRWLGNLTR--LQYIIMPNNHLEGPIPVE---FC--QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 467 (779)
Q Consensus 395 ~~~~~~l~~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 467 (779)
|..+..++. |+.|++++|++.+.+|.. +. .+++|+.|++++|++.......
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~---------------------- 692 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL---------------------- 692 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH----------------------
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH----------------------
Confidence 666665543 788888888777654422 11 3346777777777666322222
Q ss_pred ccccCCCCccEEeccCccCCCccCccccC-------CCCCCEEEccCCccccccccccc--CCCCCCEEEccCCcCCCCC
Q 004005 468 GTFFNCSSLVTLDLSYNRLNGSIPDWVDG-------LSQLSHLILGHNNLEGEVSVQLC--ELNQLQLLDLSNNNLHGPI 538 (779)
Q Consensus 468 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~ 538 (779)
+..+++|+.|++++|.+....+..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +
T Consensus 693 --~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 693 --FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp --HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred --HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 233444444444444444211111111 124555555555554 3333333 45555555555555544 2
Q ss_pred CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEcc------CCccc
Q 004005 539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS------CNKLI 612 (779)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls------~n~l~ 612 (779)
|..+..+ ++|+.|+|+ +|++.
T Consensus 769 p~~l~~L-----------------------------------------------------~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 769 PTQPLNS-----------------------------------------------------SQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp CCGGGGC-----------------------------------------------------TTCCEEECCCCBCTTCCBCC
T ss_pred chhhhcC-----------------------------------------------------CCCCEEECCCCCCccccccc
Confidence 3333222 145555554 47888
Q ss_pred ccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005 613 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685 (779)
Q Consensus 613 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 685 (779)
+.+|..+..+++|++|+|++|++. .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred ccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 889999999999999999999994 7777665 699999999999987777777666666777788887764
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-42 Score=382.31 Aligned_cols=440 Identities=18% Similarity=0.155 Sum_probs=269.4
Q ss_pred CCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcc
Q 004005 19 KSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLP 98 (779)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~ 98 (779)
++|++|++++|. +.+..+..+. .+++|++|++++|++ .+..|++|+++++|++|+|++|+++ .+|
T Consensus 21 ~~L~~L~Ls~n~---------i~~~~~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 21 QKTTILNISQNY---------ISELWTSDIL-SLSKLRILIISHNRI----QYLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp TTCSEEECCSSC---------CCCCCHHHHT-TCTTCCEEECCSSCC----CEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred ccccEEECCCCc---------ccccChhhcc-ccccccEEecCCCcc----CCcChHHhhcccCCCEEecCCCcee-ecC
Confidence 455555555555 4433334444 555555555555555 2333445555555555555555554 333
Q ss_pred hhhcCCCCCCEEEcCCCcccC-CCCcccccCCCCCCEEEccCccccCcCCcccccCCCCC--cEEEccCCccceeecccc
Q 004005 99 WCMANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL--KIFNAENNEIKAEITESH 175 (779)
Q Consensus 99 ~~~~~l~~L~~L~L~~n~l~~-~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~~~l~~~~~~~~ 175 (779)
.. .+++|++|++++|++.+ .+|. .++++++|++|++++|.+++ ..+..+++| ++|++++|.+.+
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~------ 152 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG------ 152 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT------
T ss_pred cc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc------
Confidence 33 45555555555555543 2333 45555555555555555443 133444444 555555544410
Q ss_pred cccCCcccccEEecCCCCCCCCCCchhhcCCC-CccEEEccCccCcccCChhhhhcCCCCcEEEcCCCc-------CcCC
Q 004005 176 SLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQH-DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS-------LAGP 247 (779)
Q Consensus 176 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~ 247 (779)
.+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|. +.+.
T Consensus 153 --------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 153 --------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp --------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred --------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc
Confidence 233333333333 233455566665555555555566666666666665 3333
Q ss_pred CCcCcCCCCccCEEEccCCcCCCCCCccccc--cCCCCcEEECCCCCCCcccCccc-----cCCCCCCEEEccCCcCccc
Q 004005 248 FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGE 320 (779)
Q Consensus 248 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~ 320 (779)
++ .+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .
T Consensus 213 ~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 213 LA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp HH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred hh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence 33 5566677777777776655322221111 13477788888877777777776 7888888888888887 5
Q ss_pred cc-hhhhh--CCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCC--CcC
Q 004005 321 IP-EHLAV--GCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG--KIP 395 (779)
Q Consensus 321 ~~-~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~ 395 (779)
+| ..+.. ...+|+.|++++|.+.... .+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+ ..|
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 55 22222 1256888888888776432 12567788888888888887677777788888888888887775 344
Q ss_pred ccccCCCCCcEEEccCCcccCCcCc-ccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCC
Q 004005 396 RWLGNLTRLQYIIMPNNHLEGPIPV-EFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 474 (779)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 474 (779)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++ ..+.. +. +
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~-l~--~ 421 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-----------------------TIFRC-LP--P 421 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-----------------------GGGGS-CC--T
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-----------------------chhhh-hc--c
Confidence 5677777788888887777763443 36667777777777776653 22222 21 6
Q ss_pred CccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCC
Q 004005 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538 (779)
Q Consensus 475 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 538 (779)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 7888888888888 56766668888999999999888544445888889999999999887653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.8e-41 Score=378.42 Aligned_cols=465 Identities=19% Similarity=0.145 Sum_probs=291.0
Q ss_pred CCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCCC
Q 004005 52 MPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTS 131 (779)
Q Consensus 52 l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~ 131 (779)
+...+++++++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++.+..|. .+.++++
T Consensus 30 ~~~~~~l~ls~~~L~-----~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLT-----HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCCC-----SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTT
T ss_pred cCCCcEEEcCCCCCc-----cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCC
Confidence 344578888888773 3554443 6788888888887766667788888888888888877733343 6777777
Q ss_pred CCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCccE
Q 004005 132 IEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEY 211 (779)
Q Consensus 132 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 211 (779)
|++|++++|.++. ++. . .+++|++
T Consensus 102 L~~L~Ls~N~l~~-lp~-----------------------------------------------------~--~l~~L~~ 125 (562)
T 3a79_B 102 LEYLDVSHNRLQN-ISC-----------------------------------------------------C--PMASLRH 125 (562)
T ss_dssp CCEEECTTSCCCE-ECS-----------------------------------------------------C--CCTTCSE
T ss_pred CCEEECCCCcCCc-cCc-----------------------------------------------------c--ccccCCE
Confidence 7777777776552 221 0 2346666
Q ss_pred EEccCccCcc-cCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCcc--CEEEccCCcC--CCCCCccccccCCCCcEE
Q 004005 212 VDLSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVF 286 (779)
Q Consensus 212 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~i--~~~~~~~~~~~l~~L~~L 286 (779)
|++++|.+.+ ..|..+ +++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+...-...-.+
T Consensus 126 L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 7777776664 233443 7889999999999988753 34444444 8888888887 655555443311112244
Q ss_pred ECCCCCCCcccCc-cccCCCCCCEEEccCCcCcc-ccch--hhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEcc
Q 004005 287 NNSMNALDGSIPS-SFGNMKFLQILDLSNNHLTG-EIPE--HLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLE 362 (779)
Q Consensus 287 ~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~-~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 362 (779)
+++.|.+.+.++. .+..+++|+.+++++|.... .++. ..+.++++|+.++++++.+.+.....
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~------------- 268 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK------------- 268 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH-------------
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH-------------
Confidence 5566665543333 34456666666666653110 0000 11223455555555444433211000
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCCCCCCcCccc-----cCCCCCcEEEccCCcccCCcC-cccC---CCCCCcEEEc
Q 004005 363 GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGPIP-VEFC---QLDSLQILDI 433 (779)
Q Consensus 363 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l 433 (779)
. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|+.|++
T Consensus 269 ------~-~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 269 ------L-FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ------H-HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred ------H-HHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 0 000 111244444444444443333332 2333333333333333 111 1111 1134555555
Q ss_pred cCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccc
Q 004005 434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 513 (779)
Q Consensus 434 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 513 (779)
++|.+.. .. ....+++|++|++++|.+++..|..+.++++|+.|++++|++++.
T Consensus 339 ~~n~~~~-----------------------~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 339 SDTPFIH-----------------------MV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp ESSCCCC-----------------------CC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred cCCCccc-----------------------cc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 5554431 11 125678889999999999887888888899999999999998863
Q ss_pred --ccccccCCCCCCEEEccCCcCCCCCCc-ccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccce
Q 004005 514 --VSVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 590 (779)
Q Consensus 514 --~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (779)
.+..+..+++|+.|++++|.+++.+|. .+..
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~---------------------------------------------- 426 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW---------------------------------------------- 426 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC----------------------------------------------
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcC----------------------------------------------
Confidence 345688899999999999998874443 3433
Q ss_pred eeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCC
Q 004005 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670 (779)
Q Consensus 591 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 670 (779)
+++|++|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|+++...+..+..+
T Consensus 427 -------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 427 -------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp -------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred -------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 23799999999999877666654 79999999999999 566666699999999999999995444448999
Q ss_pred CCCcEEeccCCcCcccCCC
Q 004005 671 KTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 671 ~~L~~L~l~~N~l~~~~p~ 689 (779)
++|+.|++++|+++|.||.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCCCEECCSCCBCCCHHH
T ss_pred CCCCEEEecCCCcCCCcch
Confidence 9999999999999998874
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.5e-39 Score=352.60 Aligned_cols=371 Identities=21% Similarity=0.219 Sum_probs=292.0
Q ss_pred EEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC
Q 004005 260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339 (779)
Q Consensus 260 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 339 (779)
.++.++++++ .+|. + .+++++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4566666665 5554 2 257778888888777777777888888888888888776666666666788888888888
Q ss_pred cccCccCcccCCCCCCCCEEEccCCcCCccCCc--cccCCCCCCEEEccCCCCCCCcCcc-ccCCCCCcEEEccCCcccC
Q 004005 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ--SLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLEG 416 (779)
Q Consensus 340 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~ 416 (779)
|.+.+..+..+.++++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 888777777788888888888888887764333 3777888888888888887766654 6778888888888888877
Q ss_pred CcCcccCCC--CCCcEEEccCCcCccCCCCc---------cCcccccEEEccCcccccccCcccccC---CCCccEEecc
Q 004005 417 PIPVEFCQL--DSLQILDISDNNISGSLPSC---------FHPLSIKQVHLSKNMLHGQLKRGTFFN---CSSLVTLDLS 482 (779)
Q Consensus 417 ~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~ 482 (779)
..+..+..+ .+|+.|++++|.+.+..+.. +..++|+.|++++|.+.+..+.. +.. .++|+.|+++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeec
Confidence 777666554 67788888888877654432 23467888888888876665554 322 3788888888
Q ss_pred CccCCCc----------cCccccC--CCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005 483 YNRLNGS----------IPDWVDG--LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550 (779)
Q Consensus 483 ~n~i~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 550 (779)
+|...+. .+..+.+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..|..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---- 323 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---- 323 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----
Confidence 8755432 1222322 36899999999999988898999999999999999999887777776544
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEEC
Q 004005 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 630 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 630 (779)
+|++|++++|.+++..|..+..+++|++|+|
T Consensus 324 -------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 324 -------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp -------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred -------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 7999999999999888999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 631 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 631 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|+++|.||.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999988899999999999999999999987777889999999999999999999995
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-39 Score=359.49 Aligned_cols=464 Identities=19% Similarity=0.141 Sum_probs=304.9
Q ss_pred CCCCCCEEeCCCCcccccccccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCC
Q 004005 17 HFKSLEHFDMDFTRIALNTSFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS 96 (779)
Q Consensus 17 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~ 96 (779)
.+...++++++++. +.. +|..+. ++|++|++++|.+ .+..|.++.++++|++|+|++|++++.
T Consensus 29 ~~~~~~~l~ls~~~---------L~~-ip~~~~---~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 91 (562)
T 3a79_B 29 SNELESMVDYSNRN---------LTH-VPKDLP---PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSL 91 (562)
T ss_dssp ----CCEEECTTSC---------CCS-CCTTSC---TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEE
T ss_pred ccCCCcEEEcCCCC---------Ccc-CCCCCC---CCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcC
Confidence 45556899999998 553 554333 6999999999999 344456889999999999999999988
Q ss_pred cchhhcCCCCCCEEEcCCCcccCCCCcccccCCCCCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeeccccc
Q 004005 97 LPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHS 176 (779)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 176 (779)
.|.+|.++++|++|++++|++. .+|. . .+++|++|++++|.+++......++++++|++|++++|.+.... +.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~ 164 (562)
T 3a79_B 92 DFHVFLFNQDLEYLDVSHNRLQ-NISC-C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LL 164 (562)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-EECS-C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TG
T ss_pred CHHHhCCCCCCCEEECCCCcCC-ccCc-c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hh
Confidence 8899999999999999999998 7887 3 89999999999999875322357899999999999999887521 11
Q ss_pred ccCCcccccEEecCCCCCC--CCCCchhhcCCC-CccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCc----CCCC
Q 004005 177 LIAPKFQLNTLSLSSNYGD--GFIFPKFLYHQH-DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA----GPFR 249 (779)
Q Consensus 177 ~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~ 249 (779)
.+... +|+.|++ +.+.+ ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|... ....
T Consensus 165 ~l~~L-~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 165 PVAHL-HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp GGTTS-CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred hhhhc-eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence 11111 3488888 44444 555666665544 12245677777766666655566777777777776411 0011
Q ss_pred cCcCCCCccCEEEccCCcCCCCC----CccccccCCCCcEEECCCCCCCcccCccc-----cCCCCCCEEEccCCcCccc
Q 004005 250 LPIHSHKRLRQLDVSNNNIRGHI----PVKIGDVLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGE 320 (779)
Q Consensus 250 ~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~ 320 (779)
..+..+++|++++++++.+.+.. +.... .++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 23455567777777666554221 11111 2377777777777776666665 5555555555555555 3
Q ss_pred cchhhhhC---CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCc--C
Q 004005 321 IPEHLAVG---CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI--P 395 (779)
Q Consensus 321 ~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~ 395 (779)
+|...... ..+|++|++++|.+.... ....+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.. |
T Consensus 319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 319 FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence 44222111 245777777777664322 1145666777777777776666666666677777777776666422 3
Q ss_pred ccccCCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCC
Q 004005 396 RWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 474 (779)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 474 (779)
..+..+++|++|++++|.+++.+| ..+..+++|++|++++|+++ +..+.. +. +
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~-l~--~ 450 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-----------------------GSVFRC-LP--P 450 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-----------------------GGGGSS-CC--T
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-----------------------cchhhh-hc--C
Confidence 445666666666666666665233 33555666666666666554 333222 21 5
Q ss_pred CccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005 475 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 539 (779)
Q Consensus 475 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 539 (779)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 7888888888888 455555588888888888888885444448888888888998888876543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=341.70 Aligned_cols=383 Identities=20% Similarity=0.195 Sum_probs=298.4
Q ss_pred cEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECC
Q 004005 210 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNS 289 (779)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~ 289 (779)
+.++.++++++ .+|. -.++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34555555555 4554 126788888888888777777788888888888888887666666555567888888888
Q ss_pred CCCCCcccCccccCCCCCCEEEccCCcCccccch-hhhhCCCCCCEEEccCcccCccCccc-CCCCCCCCEEEccCCcCC
Q 004005 290 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQFLALSNNNLQGHLFSR-NFNLTNLQWLQLEGNRFV 367 (779)
Q Consensus 290 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 367 (779)
+|.+++..|..|.++++|++|++++|.+.+.++. ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8888877788888888888888888888754443 23456888888888888888776655 678888888888888888
Q ss_pred ccCCccccCC--CCCCEEEccCCCCCCCcCcc--------ccCCCCCcEEEccCCcccCCcCcccCC---CCCCcEEEcc
Q 004005 368 GEIPQSLSKC--SSLEGLYLNNNSLLGKIPRW--------LGNLTRLQYIIMPNNHLEGPIPVEFCQ---LDSLQILDIS 434 (779)
Q Consensus 368 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~l~ 434 (779)
+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++.+..+..+.. .++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777766655 67888888888887654433 235678888888888887766655543 3788888888
Q ss_pred CCcCccCCCCccCcccccEEEccCcccccccCccccc--CCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccc
Q 004005 435 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 512 (779)
Q Consensus 435 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 512 (779)
+|...+....... +.. .....+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|++++
T Consensus 248 ~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 248 NSYNMGSSFGHTN-------------FKD-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TCTTTSCCTTCCS-------------SCC-CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cccccccccchhh-------------hcc-CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 8866543221111 111 1111122 23789999999999998889999999999999999999998
Q ss_pred cccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceee
Q 004005 513 EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 592 (779)
Q Consensus 513 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (779)
..+..+..+++|++|++++|.+++..|..|..++
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------------------------------- 347 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD---------------------------------------------- 347 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT----------------------------------------------
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcc----------------------------------------------
Confidence 8888999999999999999999877676665543
Q ss_pred eccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCc
Q 004005 593 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 664 (779)
Q Consensus 593 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 664 (779)
+|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|
T Consensus 348 -------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 -------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 79999999999998889999999999999999999998888889999999999999999998776
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.8e-37 Score=333.40 Aligned_cols=220 Identities=32% Similarity=0.395 Sum_probs=121.4
Q ss_pred CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEE
Q 004005 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 335 (779)
Q Consensus 256 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 335 (779)
++|++|++++|.++ .++.. .++|++|++++|.+++ +| .++.+++|++|++++|.+. .+|.. .++|++|
T Consensus 111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 45555555555554 22211 1466666666666664 45 4677777777777777766 34432 3467777
Q ss_pred EccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCccc
Q 004005 336 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 415 (779)
Q Consensus 336 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 415 (779)
++++|.+.+. + .+..+++|++|++++|.+.+ .|.. .++|++|++++|.+. .+| .+..+++|++|++++|+++
T Consensus 179 ~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 179 AAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 7777766653 2 46666777777777776664 2221 136666666666665 344 2566666666666666665
Q ss_pred CCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcccc
Q 004005 416 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 495 (779)
Q Consensus 416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 495 (779)
+ +|. .+++|+.|++++|++.+. +.. .++|++|++++|.+++. |..
T Consensus 251 ~-l~~---~~~~L~~L~l~~N~l~~l------------------------~~~----~~~L~~L~ls~N~l~~l-~~~-- 295 (454)
T 1jl5_A 251 T-LPD---LPPSLEALNVRDNYLTDL------------------------PEL----PQSLTFLDVSENIFSGL-SEL-- 295 (454)
T ss_dssp S-CCS---CCTTCCEEECCSSCCSCC------------------------CCC----CTTCCEEECCSSCCSEE-SCC--
T ss_pred c-ccc---cccccCEEECCCCccccc------------------------Ccc----cCcCCEEECcCCccCcc-cCc--
Confidence 3 222 235566666666655532 111 24555555555555531 111
Q ss_pred CCCCCCEEEccCCcccccccccccCC-CCCCEEEccCCcCCC
Q 004005 496 GLSQLSHLILGHNNLEGEVSVQLCEL-NQLQLLDLSNNNLHG 536 (779)
Q Consensus 496 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~ 536 (779)
.++|+.|++++|++++. + .+ ++|+.|++++|++++
T Consensus 296 -~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 296 -PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp -CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC
T ss_pred -CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc
Confidence 14566666666665531 1 12 356666666666553
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8e-36 Score=328.46 Aligned_cols=345 Identities=19% Similarity=0.163 Sum_probs=245.4
Q ss_pred cEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccC
Q 004005 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363 (779)
Q Consensus 284 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 363 (779)
+.++++++.++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45566665555 3444332 46666666666666 33333344566666666666666665566666666666666666
Q ss_pred CcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCC
Q 004005 364 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 443 (779)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 443 (779)
|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence 66665544556666666666666666665555566666666666666666665555556666666666666665542
Q ss_pred CccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCC
Q 004005 444 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 523 (779)
Q Consensus 444 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 523 (779)
++...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+
T Consensus 167 ---------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 167 ---------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp ---------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ---------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 33334778889999999999988877778888999999999998877766666666678
Q ss_pred CCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcce
Q 004005 524 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 603 (779)
Q Consensus 524 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 603 (779)
|+.|++++|.+++..+..+..+ ++|++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCE
T ss_pred ccEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCe
Confidence 9999999998875444444443 37999
Q ss_pred EEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcC
Q 004005 604 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 683 (779)
Q Consensus 604 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 683 (779)
|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99999999988888899999999999999999988899999999999999999999988888889999999999999999
Q ss_pred cccCCCCcccc-ccCCcccccCCCCCCCC
Q 004005 684 SGEIPEWKAQF-ATFNESSYEGNTFLCGL 711 (779)
Q Consensus 684 ~~~~p~~~~~~-~~~~~~~~~~n~~~c~~ 711 (779)
+|.|+. .++ .......+.++...|..
T Consensus 333 ~c~c~~--~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 333 ACDCRL--LWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp ECSGGG--HHHHTTTTSSCCTTCCCBEEE
T ss_pred cCccch--HhHHhhhhccccCccCceeCC
Confidence 988764 222 22233445566555544
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-35 Score=319.39 Aligned_cols=403 Identities=23% Similarity=0.248 Sum_probs=225.6
Q ss_pred cccEEecCCCCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEE
Q 004005 183 QLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLD 262 (779)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 262 (779)
.|+.|++ +++.+ +.+|..++.+++|++|++++|.+.+.+|..+ +++.+|+.+++.+|.. .++++|+
T Consensus 12 ~L~~L~l-~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 12 FLQEPLR-HSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cchhhhc-ccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEEE
Confidence 5555555 33333 4555555555666666666555555555543 3344332222222211 1346677
Q ss_pred ccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCccc
Q 004005 263 VSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 342 (779)
Q Consensus 263 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l 342 (779)
+++|.++ .+|.. .++|++|++++|.+++ +|.. +++|++|++++|.+. .++. ..++|++|++++|.+
T Consensus 78 l~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 78 LNNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQL 143 (454)
T ss_dssp CTTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCC
T ss_pred ecCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCC
Confidence 7777665 34431 2567777777776665 4432 356777777777666 3332 125677777777777
Q ss_pred CccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCccc
Q 004005 343 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 422 (779)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 422 (779)
.+. + .+..+++|++|++++|++.+ +|.. .++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|..
T Consensus 144 ~~l-p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~- 213 (454)
T 1jl5_A 144 EKL-P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL- 213 (454)
T ss_dssp SSC-C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred CCC-c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence 653 3 46677777777777777664 3332 2467777777777764 34 46677777777777777664 2221
Q ss_pred CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH 502 (779)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 502 (779)
.++|++|++++|.+. ..+....+++|+.|++++|.+.+ ++.. .++|+.|++++|.+++ +|.. +++|+.
T Consensus 214 --~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTF 281 (454)
T ss_dssp --CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred --cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccc-cCcc---cCcCCE
Confidence 246777777777776 33444446677777777777643 3332 3789999999999885 4443 378999
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccccee
Q 004005 503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIF 582 (779)
Q Consensus 503 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (779)
|++++|++++.. . ..++|+.|++++|++++.. .
T Consensus 282 L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~-~------------------------------------------ 314 (454)
T 1jl5_A 282 LDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLC-D------------------------------------------ 314 (454)
T ss_dssp EECCSSCCSEES-C---CCTTCCEEECCSSCCSEEC-C------------------------------------------
T ss_pred EECcCCccCccc-C---cCCcCCEEECcCCcCCccc-C------------------------------------------
Confidence 999999988632 1 1268999999999876411 0
Q ss_pred eeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCC-
Q 004005 583 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG- 661 (779)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 661 (779)
.+++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++
T Consensus 315 --------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 315 --------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp --------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC
T ss_pred --------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcC
Confidence 12369999999999985 5554 5789999999999994 555 47899999999999998
Q ss_pred -CCcccccCC-------------CCCcEEeccCCcCcc--cCCCCccccccCCcccccCCCCCCC
Q 004005 662 -KIPHQLVEL-------------KTLEVFSVAYNNLSG--EIPEWKAQFATFNESSYEGNTFLCG 710 (779)
Q Consensus 662 -~~~~~~~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~~n~~~c~ 710 (779)
.+|..+..+ ++|++||+++|++++ .+|.++ ..+.+.+|...|.
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV------EDLRMNSERVVDP 431 (454)
T ss_dssp CCCCTTCCEEECCC---------------------------------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH------hheeCcCcccCCc
Confidence 678888777 889999999999997 667643 3334455554443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-34 Score=312.74 Aligned_cols=347 Identities=26% Similarity=0.359 Sum_probs=233.8
Q ss_pred cCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCE
Q 004005 230 NNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 309 (779)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 309 (779)
.+++++.|++.++.+... + .+..+++|++|++++|.++ .++. ...+++|++|++++|.+.+..+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 446677777777776542 2 3556677777777777766 3333 3335666666666666664433 666666666
Q ss_pred EEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCC
Q 004005 310 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 389 (779)
Q Consensus 310 L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 389 (779)
|++++|.+. .++. +..+++|++|++++|.+.+.. .+..+++|++|+++ +.+.+.. .+..+++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 666666665 3332 344666666666666655422 35556666666664 2333221 25556666666666665
Q ss_pred CCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCccc
Q 004005 390 LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 469 (779)
Q Consensus 390 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 469 (779)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|++. + ++ .
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~-~~--~ 238 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T 238 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------c-ch--h
Confidence 5432 234555556666665555554433 444555555555555443 2 11 2
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----- 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----- 307 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence 6778889999999998886554 7888999999999999886544 7888999999999998875433 222
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 629 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 629 (779)
+++|+.|++++|++++..| +..+++|++|+
T Consensus 308 ------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 308 ------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp ------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred ------------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 3479999999999986654 77889999999
Q ss_pred CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCccc
Q 004005 630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 686 (779)
Q Consensus 630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 686 (779)
+++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999999865 468899999999999999987776 78899999999999999863
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-34 Score=308.23 Aligned_cols=335 Identities=22% Similarity=0.213 Sum_probs=257.5
Q ss_pred CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 004005 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 383 (779)
Q Consensus 304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (779)
+++++.+++++|.+. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467778888887776 6777666667888888888888777766777778888888888888877777777788888888
Q ss_pred EccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccc
Q 004005 384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 463 (779)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 463 (779)
++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++.. ...+++|+.+++++|.+.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence 88888877555555677888888888888887777777778888888888888777542 2335677888888777643
Q ss_pred ccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 004005 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 543 (779)
Q Consensus 464 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 543 (779)
+...++|+.|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..|.
T Consensus 201 ------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 201 ------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp ------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 33446788999999988754 32 2347899999999998854 4678889999999999988876666665
Q ss_pred cCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCC
Q 004005 544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 623 (779)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 623 (779)
.++ +|++|++++|++++ +|..+..++
T Consensus 270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence 543 78999999999885 566678889
Q ss_pred CCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCccccc
Q 004005 624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 703 (779)
Q Consensus 624 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 703 (779)
+|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|+++|.+.. ..+..+....+.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 369 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 369 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence 9999999999998 5566788889999999999999855 3 67788999999999999987654 455666666777
Q ss_pred CCCCCCCCC
Q 004005 704 GNTFLCGLP 712 (779)
Q Consensus 704 ~n~~~c~~~ 712 (779)
+++..|.++
T Consensus 370 ~~~~~c~~~ 378 (390)
T 3o6n_A 370 DADQHCKID 378 (390)
T ss_dssp CCCSCCCTT
T ss_pred ccCceeccc
Confidence 777777653
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=316.83 Aligned_cols=348 Identities=20% Similarity=0.188 Sum_probs=238.8
Q ss_pred EEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC
Q 004005 260 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN 339 (779)
Q Consensus 260 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 339 (779)
.++.+++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4555665555 5555442 46777777777777666677777777777777777776 33333344677777777777
Q ss_pred cccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC
Q 004005 340 NNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP 419 (779)
Q Consensus 340 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 419 (779)
|.+.......|.++++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 77776666667777788888888887777777777778888888888887776667777778888888888888776666
Q ss_pred cccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCC
Q 004005 420 VEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQ 499 (779)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 499 (779)
..+.++++|+.|++++|.+.+..+. .|..+++|+.|++++|...+.++.......+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCcccccCcc
Confidence 6677788888888887776643222 2555666666666666655555544444456
Q ss_pred CCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005 500 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579 (779)
Q Consensus 500 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (779)
|+.|++++|++++..+..+..+++|+.|++++|.+++..+..|..+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------- 272 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--------------------------------- 272 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT---------------------------------
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc---------------------------------
Confidence 77777777777655555667777777777777777655555454432
Q ss_pred ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 659 (779)
+|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus 273 --------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 273 --------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp --------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred --------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 677778888877777777788888888888888888877777778888888888888888
Q ss_pred CCCCcccccCCCCCcEEeccCCcCcccCCCC
Q 004005 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 690 (779)
Q Consensus 660 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 690 (779)
.+..+.. .-......+++.++...|..|..
T Consensus 333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 333 ACDCRLL-WVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp ECSGGGH-HHHTTTTSSCCTTCCCBEEESGG
T ss_pred cCccchH-hHHhhhhccccCccCceeCCchH
Confidence 7543321 11122333456667777766653
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-33 Score=308.39 Aligned_cols=346 Identities=26% Similarity=0.367 Sum_probs=274.5
Q ss_pred CCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCc
Q 004005 205 HQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 284 (779)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~ 284 (779)
.+++++.|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. ...+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 3568999999999887 4665 3689999999999999987654 8999999999999999984 444 44589999
Q ss_pred EEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCC
Q 004005 285 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGN 364 (779)
Q Consensus 285 ~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 364 (779)
+|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|+++ +.+... ..+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCC
Confidence 99999999986543 899999999999999998 5553 4579999999997 444433 33789999999999999
Q ss_pred cCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCC
Q 004005 365 RFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 444 (779)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 444 (779)
.+.+. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 98854 358899999999999999987655 77899999999999999864 457889999999999998764322
Q ss_pred ccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCC
Q 004005 445 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQL 524 (779)
Q Consensus 445 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 524 (779)
+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|
T Consensus 261 -------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 261 -------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp -------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred -------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 4566777777787777775433 6777788888888888775443 6677888
Q ss_pred CEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceE
Q 004005 525 QLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGL 604 (779)
Q Consensus 525 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 604 (779)
+.|++++|++++..| +.. +++|++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L 336 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL 336 (466)
T ss_dssp SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence 888888887765433 222 3468888
Q ss_pred EccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCC
Q 004005 605 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661 (779)
Q Consensus 605 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 661 (779)
++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 8888888754 467788888888888888887665 7788888888888888875
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3e-34 Score=310.95 Aligned_cols=363 Identities=19% Similarity=0.167 Sum_probs=252.3
Q ss_pred CCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCcc
Q 004005 196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 275 (779)
Q Consensus 196 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 275 (779)
....+..++.+++|++|++++|.+++ +| . +..+++|++|++++|.+.+. ++..+++|++|++++|.+++ ++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--
Confidence 33445566778888888888888875 45 3 36888888888888888764 37778888888888888874 33
Q ss_pred ccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCC
Q 004005 276 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 355 (779)
Q Consensus 276 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 355 (779)
...+++|++|++++|.+++. + ++.+++|++|++++|.+++ ++ +..+++|++|++++|...+.. .+..+++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 33467888888888888753 3 7778888888888888773 43 345778888888887443332 4667778
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccC
Q 004005 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435 (779)
Q Consensus 356 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (779)
|++|++++|++++. | +..+++|+.|++++|.+.+. .+..+++|+.|++++|++++ +| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 88888888877753 3 66777788888888877754 36677777888888777776 34 66777777777777
Q ss_pred CcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc
Q 004005 436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 515 (779)
Q Consensus 436 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 515 (779)
|++++..+ ..+++|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|
T Consensus 243 N~l~~~~~--~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELDV--STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCCC--TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcCH--HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 77765432 12344555554332 34455555555544443 3455566666666665544444
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005 516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 595 (779)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (779)
. ..++|+.|++++|
T Consensus 304 ~---~~~~L~~L~l~~~--------------------------------------------------------------- 317 (457)
T 3bz5_A 304 C---QAAGITELDLSQN--------------------------------------------------------------- 317 (457)
T ss_dssp C---TTCCCSCCCCTTC---------------------------------------------------------------
T ss_pred c---CCCcceEechhhc---------------------------------------------------------------
Confidence 2 2334444444443
Q ss_pred ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 675 (779)
Q Consensus 596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 675 (779)
++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.+.+. ..+.+|..
T Consensus 318 ---~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 318 ---PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp ---TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred ---ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence 2689999999999974 38889999999999999985 24677788999998765 34456788
Q ss_pred EeccCCcCcccCCCC
Q 004005 676 FSVAYNNLSGEIPEW 690 (779)
Q Consensus 676 L~l~~N~l~~~~p~~ 690 (779)
+++++|+++|.+|..
T Consensus 379 l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPD 393 (457)
T ss_dssp BCCBTTBEEEECCTT
T ss_pred cccccCcEEEEcChh
Confidence 899999999999874
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=317.21 Aligned_cols=335 Identities=23% Similarity=0.217 Sum_probs=259.7
Q ss_pred CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 004005 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 383 (779)
Q Consensus 304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (779)
+++++.+++++|.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456777777777776 6666666667777777777777777666677777777888887777777766677777778888
Q ss_pred EccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccc
Q 004005 384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 463 (779)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 463 (779)
++++|.+....+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+++.. ...+++|+.|++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 88877777655566677778888888887777777777777788888888887776542 2335677788887776643
Q ss_pred ccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccc
Q 004005 464 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 543 (779)
Q Consensus 464 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 543 (779)
+...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|.
T Consensus 207 ------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 207 ------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp ------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 34456789999999988754332 2 3689999999999985 35688899999999999999877777765
Q ss_pred cCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCC
Q 004005 544 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 623 (779)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 623 (779)
.++ +|+.|+|++|.+++ +|..+..++
T Consensus 276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence 543 79999999999985 577778899
Q ss_pred CCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCccccc
Q 004005 624 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 703 (779)
Q Consensus 624 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 703 (779)
+|+.|+|++|.++ .+|..+..+++|++|+|++|++.+.. +..+++|+.|++++|+++|.+.. ..+..+....+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 375 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 375 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence 9999999999999 56777889999999999999998653 67788999999999999988654 456677777788
Q ss_pred CCCCCCCCC
Q 004005 704 GNTFLCGLP 712 (779)
Q Consensus 704 ~n~~~c~~~ 712 (779)
+++..|+.+
T Consensus 376 ~~~~~C~~~ 384 (597)
T 3oja_B 376 DADQHCKID 384 (597)
T ss_dssp CCCCCCCTT
T ss_pred cccccCCcc
Confidence 888888763
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.2e-32 Score=291.85 Aligned_cols=354 Identities=19% Similarity=0.197 Sum_probs=200.2
Q ss_pred cCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCcccccCCC
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 130 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~l~~l~ 130 (779)
.+++|++|++++|.++ .+| ++..+++|++|++++|.+++. | ++.+++|++|++++|++.+ ++ +++++
T Consensus 40 ~l~~L~~L~Ls~n~l~-----~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-----DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSCCC-----CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred HcCCCCEEEccCCCcc-----cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence 4556666666665552 223 455556666666666655542 2 5555666666666666552 32 55566
Q ss_pred CCCEEEccCccccCcCCcccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCCCCCCchhhcCCCCcc
Q 004005 131 SIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE 210 (779)
Q Consensus 131 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 210 (779)
+|++|++++|.+++ + .++.+++|++|++++|.+++.. +....+|+.|+++.+.... .+ .+..+++|+
T Consensus 107 ~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L~ 173 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKIT-KL--DVTPQTQLT 173 (457)
T ss_dssp TCCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCC-CC--CCTTCTTCC
T ss_pred cCCEEECCCCcCCe-e---cCCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCccc-cc--ccccCCcCC
Confidence 66666666665553 1 1455556666666665555421 2333455555553332222 22 245566777
Q ss_pred EEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCCCCcCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC
Q 004005 211 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 290 (779)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~ 290 (779)
+|++++|.+++ +| +..+++|++|++++|.+.+. ++..+++|++|++++|.+++ +| ...+++|+.|++++
T Consensus 174 ~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 174 TLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV 242 (457)
T ss_dssp EEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred EEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence 77777777764 44 35677777777777777654 46677777777777777764 55 23366777777777
Q ss_pred CCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccC
Q 004005 291 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 370 (779)
Q Consensus 291 n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 370 (779)
|.+++.. +..+++|+.|++++|. |+.|++++|...+..+ +..+++|+.|++++|...+.+
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred CcCCCcC---HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 7777543 3455666666665542 3445556665444333 345677777777777665554
Q ss_pred CccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCccc
Q 004005 371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450 (779)
Q Consensus 371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 450 (779)
|. ..++|+.|++++ +++|++|++++|++++. .+..+++|+.|++++|++++. +.
T Consensus 303 ~~---~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l-------~~ 356 (457)
T 3bz5_A 303 DC---QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF-------SS 356 (457)
T ss_dssp EC---TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-------TT
T ss_pred cc---CCCcceEechhh-------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc-------cc
Confidence 42 223344433333 24566666666666653 255666666666666666542 23
Q ss_pred ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcc
Q 004005 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 493 (779)
Q Consensus 451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 493 (779)
|..|.+..|.+.+. ..+..++.+++++|++++.+|..
T Consensus 357 L~~L~l~~n~l~g~------~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 357 VGKIPALNNNFEAE------GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGSSGGGTSEEEE------EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccCCcEEec------ceeeecCccccccCcEEEEcChh
Confidence 44455555555443 12345556666666666665543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-31 Score=280.66 Aligned_cols=304 Identities=24% Similarity=0.345 Sum_probs=192.7
Q ss_pred CCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEE
Q 004005 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359 (779)
Q Consensus 280 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 359 (779)
+++++.|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+... ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4567777777766653 23 2666667777777776665 4443 34566666666666666542 245566666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (779)
++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 666666654322 556666666666666444332 235566666666666666554322 455556666666655544
Q ss_pred cCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc
Q 004005 440 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 519 (779)
Q Consensus 440 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 519 (779)
+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +.
T Consensus 191 ~~------------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 DI------------------------SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CC------------------------GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred cc------------------------cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 21 11 5566777777777777765433 6667777777777777775433 67
Q ss_pred CCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecccccc
Q 004005 520 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 599 (779)
Q Consensus 520 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (779)
.+++|++|++++|.+++. ..+.. ++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence 777777777777776642 11211 33
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
+|++|++++|++++. ..+..+++|++|++++|++++..+..|..+++|++|++++|++++..| +..+++|++|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 677788888877743 357777788888888888877777777778888888888888876555 6777888888888
Q ss_pred CCcCc
Q 004005 680 YNNLS 684 (779)
Q Consensus 680 ~N~l~ 684 (779)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88775
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-32 Score=281.77 Aligned_cols=260 Identities=34% Similarity=0.570 Sum_probs=211.9
Q ss_pred CCCCEEEccCCCCCC--CcCccccCCCCCcEEEccC-CcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEE
Q 004005 378 SSLEGLYLNNNSLLG--KIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQV 454 (779)
Q Consensus 378 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 454 (779)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 356666666666665 5566666666667777663 66666666666677777777777666653
Q ss_pred EccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCC-CCCEEEccCCc
Q 004005 455 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-QLQLLDLSNNN 533 (779)
Q Consensus 455 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 533 (779)
.++.. |..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|.
T Consensus 116 ---------~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ---------AIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------ECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------cCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 23332 66778888888888888877888888888888888888888877888888887 88899999988
Q ss_pred CCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccc
Q 004005 534 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 613 (779)
Q Consensus 534 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 613 (779)
+++.+|..+..+ .|++|++++|++++
T Consensus 186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence 887777666543 28899999999998
Q ss_pred cCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccc
Q 004005 614 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ 693 (779)
Q Consensus 614 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 693 (779)
..|..+..+++|+.|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 8999999999999999999999976665 889999999999999999999999999999999999999999999987 78
Q ss_pred cccCCcccccCCCCCCCCCCCCCC
Q 004005 694 FATFNESSYEGNTFLCGLPLPICR 717 (779)
Q Consensus 694 ~~~~~~~~~~~n~~~c~~~l~~c~ 717 (779)
+.++..+.+.+|++.|+.|++.|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccccChHHhcCCCCccCCCCCCCC
Confidence 999999999999999998887773
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-31 Score=286.80 Aligned_cols=313 Identities=20% Similarity=0.226 Sum_probs=270.8
Q ss_pred CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 408 (779)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 408 (779)
+++++.++++++.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 68899999999999987777788999999999999999988888999999999999999999988888899999999999
Q ss_pred ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCC
Q 004005 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487 (779)
Q Consensus 409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 487 (779)
+++|.++...+..|.++++|++|++++|++.+..+..+. +++|+.|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccccccc
Confidence 999999976666678999999999999999988776554 78999999999998653 2 566899999999999887
Q ss_pred CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhc
Q 004005 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 567 (779)
Q Consensus 488 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (779)
+ +...++|+.|++++|.++.... ...++|+.|++++|.+++. ..+..
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~----------------------- 246 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN----------------------- 246 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC-----------------------
Confidence 4 2345789999999999985533 2357999999999998753 22222
Q ss_pred ccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC
Q 004005 568 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647 (779)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 647 (779)
+++|++|++++|.+.+..|..+..+++|++|++++|++++ .|..+..++
T Consensus 247 ------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 247 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred ------------------------------CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence 3479999999999998889999999999999999999995 566778899
Q ss_pred CCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713 (779)
Q Consensus 648 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 713 (779)
+|++|++++|++. .+|..+..+++|++|++++|+++.. | +..+.++..+.+.+|++.|+|..
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence 9999999999998 5677788899999999999999855 4 46778889999999999998743
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.1e-30 Score=274.99 Aligned_cols=308 Identities=27% Similarity=0.363 Sum_probs=252.5
Q ss_pred CcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCC
Q 004005 251 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 330 (779)
Q Consensus 251 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 330 (779)
.+..+++|++|+++++.+. .++. ...+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence 4456789999999999997 5553 3448999999999999986443 899999999999999998 5553 55799
Q ss_pred CCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005 331 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410 (779)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (779)
+|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 99999999999987544 7899999999999997664444 48999999999999999886544 8899999999999
Q ss_pred CCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCcc
Q 004005 411 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 490 (779)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 490 (779)
+|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCG
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCc
Confidence 999986543 7889999999999988764221 556788888888888888544
Q ss_pred CccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccc
Q 004005 491 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570 (779)
Q Consensus 491 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (779)
+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------- 285 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN-------------------------- 285 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG--------------------------
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC--------------------------
Confidence 4 77888999999999988853 4578889999999999988753 12222
Q ss_pred cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCC
Q 004005 571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 650 (779)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 650 (779)
+++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|+
T Consensus 286 ---------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 286 ---------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp ---------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred ---------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 3479999999999998888889999999999999999997665 88899999
Q ss_pred EEECCCCcCC
Q 004005 651 SLDLSNNKLN 660 (779)
Q Consensus 651 ~L~L~~N~l~ 660 (779)
+|++++|+++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999985
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.8e-31 Score=296.35 Aligned_cols=312 Identities=20% Similarity=0.229 Sum_probs=272.4
Q ss_pred CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 408 (779)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 408 (779)
+.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67899999999999988877788999999999999999988888999999999999999999988888899999999999
Q ss_pred ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccccEEEccCcccccccCcccccCCCCccEEeccCccCC
Q 004005 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 487 (779)
Q Consensus 409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~ 487 (779)
+++|.+++..+..|.++++|++|++++|.+.+..+..+. +++|+.|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccc
Confidence 999999977777789999999999999999988887664 78999999999998653 2 556789999999999887
Q ss_pred CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhc
Q 004005 488 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 567 (779)
Q Consensus 488 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (779)
+ +...++|+.|++++|.++...+.. .++|+.|++++|.+++. ..+..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~----------------------- 252 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN----------------------- 252 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence 4 345578999999999998544332 36899999999998752 33322
Q ss_pred ccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC
Q 004005 568 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647 (779)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 647 (779)
+++|+.|++++|.+.+..|..|..+++|+.|+|++|++++ +|..+..++
T Consensus 253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 3479999999999999889999999999999999999996 567778899
Q ss_pred CCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005 648 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 648 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
+|+.|+|++|++. .+|..+..+++|++|++++|++++.. +..+..+..+.+.+|++.|+|.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence 9999999999998 67888899999999999999998653 3567788899999999999864
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=263.76 Aligned_cols=291 Identities=23% Similarity=0.302 Sum_probs=202.7
Q ss_pred CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 385 (779)
Q Consensus 306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (779)
+++.++++++.+. .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4566666666665 555433 356777777777777666666777777777777777777666777777777777777
Q ss_pred cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccccc
Q 004005 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 465 (779)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 465 (779)
++|.+.. +|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+... ..
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 162 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI 162 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence 7777763 333332 6777777777777766666677777788887777766421 11
Q ss_pred CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccC
Q 004005 466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 545 (779)
Q Consensus 466 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 545 (779)
....+.++++|++|++++|.++. +|..+. ++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 12236677778888888887774 343332 678888888888877767777888888888888887776555555433
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCC
Q 004005 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 625 (779)
++|++|++++|+++ .+|..+..+++|
T Consensus 240 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 -----------------------------------------------------PHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp -----------------------------------------------------TTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred -----------------------------------------------------CCCCEEECCCCcCc-cCChhhccCCCc
Confidence 36888888888887 677778888888
Q ss_pred CEEECcccccccCCCCCCCCC------CCCCEEECCCCcCCC--CCcccccCCCCCcEEeccCCc
Q 004005 626 QTLNLSHNNLTGSIPSTFSNL------KHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN 682 (779)
Q Consensus 626 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 682 (779)
++|++++|++++..+..|... +.++.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888887776666543 678888888888864 566778888888888888874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.6e-30 Score=265.40 Aligned_cols=290 Identities=22% Similarity=0.289 Sum_probs=201.6
Q ss_pred CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 385 (779)
Q Consensus 306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (779)
+++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|++.+..|.+|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5677777777766 666544 356777777777777766667777788888888888777776777777888888888
Q ss_pred cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccccc
Q 004005 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 465 (779)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 465 (779)
++|.+.. +|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+... ..
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 8887763 333333 6778888888877766666677778888888877776521 01
Q ss_pred CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccC
Q 004005 466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 545 (779)
Q Consensus 466 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 545 (779)
....+..+ +|+.|++++|.+++ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 11224444 67777777777764 343332 567777777777776666677777777777777777776655555443
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCC
Q 004005 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 625 (779)
+ +|++|++++|+++ .+|..+..+++|
T Consensus 241 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 241 P-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp T-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred C-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCccC
Confidence 2 6778888888777 567777888888
Q ss_pred CEEECcccccccCCCCCCCCC------CCCCEEECCCCcCC--CCCcccccCCCCCcEEeccCCc
Q 004005 626 QTLNLSHNNLTGSIPSTFSNL------KHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN 682 (779)
Q Consensus 626 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 682 (779)
++|++++|++++..+..|... ++|+.|++++|++. ...|..|..+++|+.+++++|.
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888887766666653 56788888888887 5677778888888888888774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.7e-29 Score=259.46 Aligned_cols=267 Identities=18% Similarity=0.217 Sum_probs=180.8
Q ss_pred CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458 (779)
Q Consensus 379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 458 (779)
.++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++++|+++......+ ++|+.|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 44445555554444444444455555555555555544444455555555555555555543222221 4555555555
Q ss_pred cccccccCcccccCCCCccEEeccCccCCC--ccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCC
Q 004005 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG 536 (779)
Q Consensus 459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 536 (779)
|.+.+ ++...|.++++|+.|++++|.+.. ..+..+.++++|+.|++++|.++. .|..+. ++|++|++++|.+++
T Consensus 131 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 131 NEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred Ccccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 55533 333347788899999999998864 567778888999999999998885 343332 789999999998887
Q ss_pred CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc
Q 004005 537 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 616 (779)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 616 (779)
..+..+..++ +|++|++++|++++..+
T Consensus 207 ~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 207 VDAASLKGLN-----------------------------------------------------NLAKLGLSFNSISAVDN 233 (330)
T ss_dssp ECTGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred cCHHHhcCCC-----------------------------------------------------CCCEEECCCCcCceeCh
Confidence 6666665443 78899999999988777
Q ss_pred ccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccC------CCCCcEEeccCCcCcc--cCC
Q 004005 617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLSG--EIP 688 (779)
Q Consensus 617 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~p 688 (779)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ..+++.+++++|++.. ..|
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 78888899999999999988 67778888999999999999998777766653 3678889999998864 444
Q ss_pred CCccccccCCcccccCC
Q 004005 689 EWKAQFATFNESSYEGN 705 (779)
Q Consensus 689 ~~~~~~~~~~~~~~~~n 705 (779)
..+..+..+..+.+++|
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 55556666666666665
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.3e-29 Score=259.20 Aligned_cols=251 Identities=25% Similarity=0.290 Sum_probs=140.0
Q ss_pred ccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEE
Q 004005 257 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLA 336 (779)
Q Consensus 257 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 336 (779)
+++.++++++.++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--------------------- 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--------------------- 88 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS---------------------
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC---------------------
Confidence 4555666655554 4444332 34555555555554444444444555555555544
Q ss_pred ccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccC
Q 004005 337 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 416 (779)
Q Consensus 337 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 416 (779)
.+.+..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 89 ----~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 89 ----KISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp ----CCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred ----ccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 4444444445555555555555555542 222222 455566666665554444455556666666666665542
Q ss_pred --CcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccc
Q 004005 417 --PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494 (779)
Q Consensus 417 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 494 (779)
..+..+..+ +|+.|++++|++++.....+ ++|+.|++++|.+.+..+. .|..+++|+.|++++|.+++..+..+
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHh
Confidence 444555555 66666666666654322211 3455555555555333222 36667777777777777776666667
Q ss_pred cCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005 495 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544 (779)
Q Consensus 495 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 544 (779)
..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 77777777777777776 45555667777777777777776555555443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.6e-30 Score=268.02 Aligned_cols=255 Identities=31% Similarity=0.500 Sum_probs=172.9
Q ss_pred CCCCEEEccCCcCCc--cCCccccCCCCCCEEEccC-CCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcE
Q 004005 354 TNLQWLQLEGNRFVG--EIPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 430 (779)
Q Consensus 354 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 430 (779)
.+++.|++++|.+.+ ..|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777776 6666777777777777774 6676667777777777777777777777667777777777777
Q ss_pred EEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCC-CCCEEEccCCc
Q 004005 431 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS-QLSHLILGHNN 509 (779)
Q Consensus 431 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~ 509 (779)
|++++|.+.+..+. . +..+++|++|++++|.+++.+|..+..++ +|+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~-----------------------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPP-----------------------S-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCG-----------------------G-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCCh-----------------------H-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 77777776643332 1 45556666666666666655666666665 66666666666
Q ss_pred ccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccc
Q 004005 510 LEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNI 589 (779)
Q Consensus 510 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (779)
+++..|..+..++ |+.|++++|.+++..|..+..++
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~------------------------------------------- 221 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK------------------------------------------- 221 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-------------------------------------------
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC-------------------------------------------
Confidence 6666666666655 66666666666655555444332
Q ss_pred eeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccC
Q 004005 590 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 669 (779)
Q Consensus 590 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 669 (779)
+|++|++++|++++..|. +..+++|++|++++|++++..|..|..+++|++|++++|++++.+|.. ..
T Consensus 222 ----------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 222 ----------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp ----------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred ----------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 567777777777654444 666777777777777777777777777777777777777777777765 66
Q ss_pred CCCCcEEeccCCcCcccCC
Q 004005 670 LKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 670 l~~L~~L~l~~N~l~~~~p 688 (779)
+++|+.+++++|+.-|..|
T Consensus 290 l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGSCGGGTCSSSEEESTT
T ss_pred ccccChHHhcCCCCccCCC
Confidence 7777777777777444333
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.2e-33 Score=303.53 Aligned_cols=209 Identities=17% Similarity=0.128 Sum_probs=134.9
Q ss_pred CCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCcCC----CCcCcCCCCccCEEEccCCcCCCCCCccccccCC-
Q 004005 207 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP----FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP- 281 (779)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~- 281 (779)
++|++|+++++.+++.....++..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888777554444457788888888888887642 3445667788888888888876544444444454
Q ss_pred ---CCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCccccchhhhh----CCCCCCEEEccCcccCccC----
Q 004005 282 ---SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQFLALSNNNLQGHL---- 346 (779)
Q Consensus 282 ---~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~---- 346 (779)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 45777888889999999988887444433322 2456778888777776533
Q ss_pred cccCCCCCCCCEEEccCCcCCccCCcccc-----CCCCCCEEEccCCCCCCC----cCccccCCCCCcEEEccCCccc
Q 004005 347 FSRNFNLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLE 415 (779)
Q Consensus 347 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 415 (779)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33344566777777777766543322222 244666666666665542 2334444555555555555544
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.4e-33 Score=303.42 Aligned_cols=280 Identities=22% Similarity=0.178 Sum_probs=163.2
Q ss_pred CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCc----ccCccccCCCCCCEEEccCCcCccccchhhhhCCC-
Q 004005 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV- 330 (779)
Q Consensus 256 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~- 330 (779)
++|++|++++|.+++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4667777777776533333334446777777777777764 34556777788888888888877555555555555
Q ss_pred ---CCCEEEccCcccCc----cCcccCCCCCCCCEEEccCCcCCccCCccc-----cCCCCCCEEEccCCCCCCCc----
Q 004005 331 ---NLQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNNSLLGKI---- 394 (779)
Q Consensus 331 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~---- 394 (779)
+|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+.+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888887774 335666777888888888887764333222 23456888888888776533
Q ss_pred CccccCCCCCcEEEccCCcccCCcCcccC-----CCCCCcEEEccCCcCccCC----CCcc-CcccccEEEccCcccccc
Q 004005 395 PRWLGNLTRLQYIIMPNNHLEGPIPVEFC-----QLDSLQILDISDNNISGSL----PSCF-HPLSIKQVHLSKNMLHGQ 464 (779)
Q Consensus 395 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~-~~~~L~~L~l~~n~~~~~ 464 (779)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+ .+++|+.|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 34455667777888877776643333322 2557777777777665421 1111 134555555555544321
Q ss_pred ----cCcccccCCCCccEEeccCccCCCc----cCccccCCCCCCEEEccCCccccccccccc-----CCCCCCEEEccC
Q 004005 465 ----LKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEGEVSVQLC-----ELNQLQLLDLSN 531 (779)
Q Consensus 465 ----~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~ 531 (779)
+....+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+. ..++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1111122355566666666655532 344444455666666666655433222221 124555666665
Q ss_pred CcCC
Q 004005 532 NNLH 535 (779)
Q Consensus 532 n~l~ 535 (779)
|.++
T Consensus 323 n~l~ 326 (461)
T 1z7x_W 323 CSFT 326 (461)
T ss_dssp SCCB
T ss_pred CCCc
Confidence 5554
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=259.04 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=192.3
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC
Q 004005 357 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436 (779)
Q Consensus 357 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 436 (779)
+.++..+..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+.++.+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 2333332 35566666666665555555666666666666666666555556666666666666666
Q ss_pred cCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCC-ccccccc
Q 004005 437 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGEVS 515 (779)
Q Consensus 437 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 515 (779)
+++.. +...|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+
T Consensus 123 ~l~~~------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 123 RLTTI------------------------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CCSSC------------------------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred cCCee------------------------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 65532 2223556667777777777776655666777777777777774 3443444
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005 516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 595 (779)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (779)
..|..+++|+.|++++|.++.. |. +.
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~-~~-~~---------------------------------------------------- 204 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREI-PN-LT---------------------------------------------------- 204 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSC-CC-CT----------------------------------------------------
T ss_pred chhhcccccCeecCCCCcCccc-cc-cC----------------------------------------------------
Confidence 4677778888888888877632 21 21
Q ss_pred ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 675 (779)
Q Consensus 596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 675 (779)
.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|+.
T Consensus 205 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 205 -PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp -TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred -CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 1347999999999999888999999999999999999999999999999999999999999999888888999999999
Q ss_pred EeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 676 FSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDD 733 (779)
Q Consensus 676 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~~ 733 (779)
|++++|++.|.|.. .++..|.......+. .+ ...|..|....++.+...+..
T Consensus 284 L~L~~Np~~CdC~l--~~l~~~~~~~~~~~~-~~---~~~C~~P~~l~g~~l~~l~~~ 335 (440)
T 3zyj_A 284 IHLHHNPWNCNCDI--LWLSWWIKDMAPSNT-AC---CARCNTPPNLKGRYIGELDQN 335 (440)
T ss_dssp EECCSSCEECSSTT--HHHHHHHHTTSCSSC-SC---CCBEEESTTTTTCBCC----C
T ss_pred EEcCCCCccCCCCc--hHHHHHHHhccccCC-cc---ccCCCChhHhcCccHhHhhhh
Confidence 99999999998874 222222111101110 00 123777777777665554433
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-27 Score=260.49 Aligned_cols=233 Identities=21% Similarity=0.194 Sum_probs=168.0
Q ss_pred CCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEcc
Q 004005 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457 (779)
Q Consensus 378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 457 (779)
++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI---------------- 138 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC----------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc----------------
Confidence 3455555555555554455555555555555555555555555555666666666666655422
Q ss_pred CcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCC-cccccccccccCCCCCCEEEccCCcCCC
Q 004005 458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGEVSVQLCELNQLQLLDLSNNNLHG 536 (779)
Q Consensus 458 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 536 (779)
+...|.++++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|+.|++++|.+++
T Consensus 139 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 139 --------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp --------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred --------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 2223555666667777776666555556667777777777763 4443444457777788888888887764
Q ss_pred CCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc
Q 004005 537 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 616 (779)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 616 (779)
. | .+. .+++|++|++++|++++..|
T Consensus 211 ~-~-~~~-----------------------------------------------------~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 211 M-P-NLT-----------------------------------------------------PLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp C-C-CCT-----------------------------------------------------TCTTCCEEECTTSCCSEECG
T ss_pred c-c-ccc-----------------------------------------------------ccccccEEECcCCcCcccCc
Confidence 3 2 121 13479999999999998889
Q ss_pred ccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 617 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 617 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++.|.|..
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999999999999999999999999999999999988888889999999999999999998874
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.8e-28 Score=253.27 Aligned_cols=209 Identities=24% Similarity=0.246 Sum_probs=146.9
Q ss_pred CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 004005 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 383 (779)
Q Consensus 304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (779)
++.....+.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455677777776 666644 3467777777777776666667777777777777777776666677777777777
Q ss_pred EccCCCCCCCcCccccCCCCCcEEEccCCcccCCcC-cccCCCCCCcEEEccCCc-CccCCCCccCcccccEEEccCccc
Q 004005 384 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNML 461 (779)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~ 461 (779)
++++|.+.+..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|+ +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 777777775544556777777777777777764433 356667777777777663 32
Q ss_pred ccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCc
Q 004005 462 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPP 540 (779)
Q Consensus 462 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 540 (779)
.++...|.++++|++|++++|.+.+..|..+..+++|++|++++|+++......+..+++|+.|++++|.+++..+.
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 23333477788888888888888877788888888888888888888754444455678888888888887754433
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.6e-28 Score=247.69 Aligned_cols=201 Identities=20% Similarity=0.247 Sum_probs=133.1
Q ss_pred ccCCCCccEEeccCccCCCccC-ccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCC-CCCcccccCcc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTL 547 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~ 547 (779)
+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+..+
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-- 174 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-- 174 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC--
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC--
Confidence 4445556666666665554333 345556666666666666665555556666666666666666554 233333332
Q ss_pred cccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCE
Q 004005 548 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 627 (779)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 627 (779)
++|++|++++|++++..|..+..+++|++
T Consensus 175 ---------------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 175 ---------------------------------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp ---------------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ---------------------------------------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 36777888888887777788888889999
Q ss_pred EECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC-CCcEEeccCCcCcccCCC-Cc-cccccCCcccccC
Q 004005 628 LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPE-WK-AQFATFNESSYEG 704 (779)
Q Consensus 628 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~-~~-~~~~~~~~~~~~~ 704 (779)
|++++|++++..+..|..+++|++|++++|++.+..|..+..++ +|++|++++|+++|.++. ++ .++..........
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~ 283 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCG
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccc
Confidence 99999998877777888899999999999999988888888874 899999999999987653 11 1222222222233
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 705 NTFLCGLPLPICRSPATMPEASIGNE 730 (779)
Q Consensus 705 n~~~c~~~l~~c~~~~~~~~~~~~~~ 730 (779)
+.. .|..|....+.++.++
T Consensus 284 ~~~-------~C~~p~~~~g~~~~~~ 302 (306)
T 2z66_A 284 ERM-------ECATPSDKQGMPVLSL 302 (306)
T ss_dssp GGC-------BEEESGGGTTCBGGGC
T ss_pred ccc-------ccCCchhhCCceeeee
Confidence 322 3666766666554433
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.5e-27 Score=253.01 Aligned_cols=253 Identities=24% Similarity=0.288 Sum_probs=214.6
Q ss_pred CCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCc
Q 004005 380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459 (779)
Q Consensus 380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 459 (779)
.+.++..+..+. .+|..+. ++++.|++++|++....+..|.++++|++|++++|.+.+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------- 102 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------------------- 102 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-------------------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-------------------
Confidence 457777777776 4454443 678888888888887777778888888888888887653
Q ss_pred ccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC-C
Q 004005 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-I 538 (779)
Q Consensus 460 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~ 538 (779)
++...|.++++|++|++++|++++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|+..+. .
T Consensus 103 -----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 103 -----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp -----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred -----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 3334488899999999999999987778899999999999999999988888899999999999999654333 3
Q ss_pred CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005 539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 618 (779)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 618 (779)
+..|..+ ++|++|++++|+++. +| .
T Consensus 178 ~~~~~~l-----------------------------------------------------~~L~~L~L~~n~l~~-~~-~ 202 (440)
T 3zyj_A 178 EGAFEGL-----------------------------------------------------SNLRYLNLAMCNLRE-IP-N 202 (440)
T ss_dssp TTTTTTC-----------------------------------------------------SSCCEEECTTSCCSS-CC-C
T ss_pred cchhhcc-----------------------------------------------------cccCeecCCCCcCcc-cc-c
Confidence 3344443 479999999999984 55 5
Q ss_pred ccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCC
Q 004005 619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN 698 (779)
Q Consensus 619 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~ 698 (779)
+..+++|++|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|++++|+++...+..+..+.++.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cccccCCCCCCCCCCC
Q 004005 699 ESSYEGNTFLCGLPLP 714 (779)
Q Consensus 699 ~~~~~~n~~~c~~~l~ 714 (779)
.+.+.+|||.|+|.+.
T Consensus 283 ~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDIL 298 (440)
T ss_dssp EEECCSSCEECSSTTH
T ss_pred EEEcCCCCccCCCCch
Confidence 9999999999999764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.9e-28 Score=253.21 Aligned_cols=281 Identities=19% Similarity=0.176 Sum_probs=220.7
Q ss_pred CCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEE
Q 004005 329 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 408 (779)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 408 (779)
|+.....+.+++.++.+. ..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 555556777888877543 333 25788888888888876666788888888888888888877777788888888888
Q ss_pred ccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCc-ccccCCCCccEEeccCc-cC
Q 004005 409 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYN-RL 486 (779)
Q Consensus 409 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~i 486 (779)
+++|++++..+..+.++++|++|++++|++.+ ++. ..|..+++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence 88888886655557888888888888887763 222 34778999999999999 47
Q ss_pred CCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhh
Q 004005 487 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFS 566 (779)
Q Consensus 487 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (779)
.+..+..+.++++|+.|++++|++++..+..+..+++|++|++++|.+....+..+.
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----------------------- 219 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD----------------------- 219 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-----------------------
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh-----------------------
Confidence 766778899999999999999999988899999999999999999987532211111
Q ss_pred cccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccc---cCCCCCCEEECccccccc----CC
Q 004005 567 IEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI---GNLTRIQTLNLSHNNLTG----SI 639 (779)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~----~~ 639 (779)
.+++|++|++++|++++..+..+ .....++.++++++.+.+ .+
T Consensus 220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 13479999999999987655543 345678889999888875 35
Q ss_pred CCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 640 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 640 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
|..+..+++|++|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 67788999999999999999954444468999999999999999998873
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=252.28 Aligned_cols=272 Identities=22% Similarity=0.268 Sum_probs=226.5
Q ss_pred CCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCc
Q 004005 380 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 459 (779)
Q Consensus 380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 459 (779)
...++.++..++ .+|..+. ++++.|++++|.+++..+..|.++++|+.|++++|++.+.
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~------------------ 114 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI------------------ 114 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE------------------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc------------------
Confidence 456777776666 3454333 6788888888888877777888888888888888877633
Q ss_pred ccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC-C
Q 004005 460 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-I 538 (779)
Q Consensus 460 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~ 538 (779)
+...|.++++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|+..+. .
T Consensus 115 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 115 ------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp ------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred ------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 233488899999999999999988888899999999999999999987788899999999999999544333 3
Q ss_pred CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005 539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 618 (779)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 618 (779)
+..|.. +++|++|++++|++++ +| .
T Consensus 189 ~~~~~~-----------------------------------------------------l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 189 EGAFEG-----------------------------------------------------LFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp TTTTTT-----------------------------------------------------CTTCCEEECTTSCCSS-CC-C
T ss_pred hhhccC-----------------------------------------------------CCCCCEEECCCCcccc-cc-c
Confidence 333433 3479999999999985 44 5
Q ss_pred ccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCC
Q 004005 619 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN 698 (779)
Q Consensus 619 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~ 698 (779)
+..+++|++|+|++|++++..|..|.++++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+.++.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cccccCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCC
Q 004005 699 ESSYEGNTFLCGLPLP------------------ICRSPATMPEASIGNEQDD 733 (779)
Q Consensus 699 ~~~~~~n~~~c~~~l~------------------~c~~~~~~~~~~~~~~~~~ 733 (779)
.+.+.+|||.|+|.+. .|..|....++.+...+..
T Consensus 294 ~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~ 346 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQA 346 (452)
T ss_dssp EEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGG
T ss_pred EEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchh
Confidence 9999999999999752 3888888887766555443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.5e-27 Score=242.32 Aligned_cols=263 Identities=23% Similarity=0.264 Sum_probs=181.2
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCC--cCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEE
Q 004005 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK--IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 431 (779)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 431 (779)
++|++|++++|.+....+..|.++++|++|++++|.+... .+..+..+++|++|++++|.+.. ++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 3455555555555533333445555555555555555422 13334445566666666665552 34445566666666
Q ss_pred EccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccc
Q 004005 432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511 (779)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 511 (779)
++++|++.+..+ ...+..+++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 666666553221 123666778888888888887777777888888888888888887
Q ss_pred c-cccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccce
Q 004005 512 G-EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 590 (779)
Q Consensus 512 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (779)
+ ..|..+..+++|+.|++++|.+++..|..+..++
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------------------- 199 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-------------------------------------------- 199 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT--------------------------------------------
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC--------------------------------------------
Confidence 5 4677788888888888888888776666665433
Q ss_pred eeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC-CCCEEECCCCcCCCCCc--ccc
Q 004005 591 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-HVESLDLSNNKLNGKIP--HQL 667 (779)
Q Consensus 591 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~--~~~ 667 (779)
+|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++.+..+ ...
T Consensus 200 ---------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~ 270 (306)
T 2z66_A 200 ---------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 270 (306)
T ss_dssp ---------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred ---------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence 788999999999877777889999999999999999998999999985 99999999999986533 112
Q ss_pred cCCCCCcEEeccCCcCcccCCCCccc
Q 004005 668 VELKTLEVFSVAYNNLSGEIPEWKAQ 693 (779)
Q Consensus 668 ~~l~~L~~L~l~~N~l~~~~p~~~~~ 693 (779)
..+...+.+.+..+.+.|..|..+..
T Consensus 271 ~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 271 QWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp HHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHhhhhhhccccccccCCchhhCC
Confidence 23444555667788999988876543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-26 Score=235.55 Aligned_cols=264 Identities=21% Similarity=0.211 Sum_probs=180.6
Q ss_pred CEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcc
Q 004005 381 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 460 (779)
Q Consensus 381 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 460 (779)
++++.+++.+.. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------ 72 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------------------ 72 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------------
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC------------------
Confidence 344555544442 23222 245555555555555544455555666666666665554321
Q ss_pred cccccCcccccCCCCccEEeccCcc-CCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005 461 LHGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 539 (779)
Q Consensus 461 ~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 539 (779)
...|.++++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 73 ------~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 73 ------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp ------TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ------HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 1225666777777777775 665556677777777777777777776667777777888888888887776555
Q ss_pred cccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccc
Q 004005 540 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 619 (779)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 619 (779)
..|..++ +|++|++++|++++..+..+
T Consensus 147 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred hHhccCC-----------------------------------------------------CccEEECCCCcccccCHHHh
Confidence 5554433 68888888888887666778
Q ss_pred cCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCc
Q 004005 620 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE 699 (779)
Q Consensus 620 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~ 699 (779)
..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.++.. ..+.++..
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~ 252 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence 99999999999999999888999999999999999999999877788999999999999999999887742 11222233
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 700 SSYEGNTFLCGLPLPICRSPATMPEASIGNEQD 732 (779)
Q Consensus 700 ~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~ 732 (779)
.....+... |..|....+..+.+...
T Consensus 253 ~~~~~~~~~-------c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 253 FRGSSSEVP-------CSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp CCSEECCCB-------EEESGGGTTCBGGGSCG
T ss_pred cccccCccc-------cCCchHhCCcChhhcCH
Confidence 333334332 66666666655544443
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.2e-28 Score=275.98 Aligned_cols=427 Identities=13% Similarity=0.060 Sum_probs=218.2
Q ss_pred cCCCCcEEeCCCcccCCCCCCccccc------------ccCCCCCCEEeccCCCCCCCcchhhcCC-C-CCCEEEcCCCc
Q 004005 51 SMPSLKYLSLSYYTLGTNSSGTLDQG------------LCSLVHLQELYIASNDLRGSLPWCMANM-T-SLRILDVSSNQ 116 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~~~~~~l~~~------------l~~l~~L~~L~L~~~~l~~~~~~~~~~l-~-~L~~L~L~~n~ 116 (779)
.+++|++|+++++..-.. .+.+|.. ...+++|++|+|++|.+++..+..+... + +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAM-FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HCTTCSEEEEECSCGGGG-GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred hCCCCeEEEecCCcchhh-cccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 677788888776532000 0111111 1256777777777776665555555542 3 37777777665
Q ss_pred c-cC-CCCcccccCCCCCCEEEccCccccCcCC---cccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCC
Q 004005 117 L-TG-SISSSPLVHLTSIEELMLSNNYFQIPIS---LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 191 (779)
Q Consensus 117 l-~~-~l~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 191 (779)
. .. .++. ...++++|++|++++|.+++... ......+++|++|++++|.+.+...
T Consensus 150 ~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~------------------- 209 (592)
T 3ogk_B 150 GFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP------------------- 209 (592)
T ss_dssp EEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-------------------
T ss_pred CcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-------------------
Confidence 1 10 1111 23466777777777776543211 0122345556666555554431100
Q ss_pred CCCCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcCc---CCCCcCcCCCCccCEEEccCCcC
Q 004005 192 NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA---GPFRLPIHSHKRLRQLDVSNNNI 268 (779)
Q Consensus 192 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~i 268 (779)
+.++..+..+++|++|++++|.+.+ ++.. +..+++|++|.++..... ......+..+++|+.|+++++..
T Consensus 210 -----~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 210 -----KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp -----HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred -----HHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence 1234445667788888888887764 5544 467888888888753322 22334566677888888777533
Q ss_pred CCCCCccccccCCCCcEEECCCCCCCcccC-ccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC--------
Q 004005 269 RGHIPVKIGDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN-------- 339 (779)
Q Consensus 269 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~-------- 339 (779)
. .+|.. ...+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++
T Consensus 283 ~-~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 283 N-EMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp T-TGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred h-HHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 2 33433 3336677777777777554332 234667777777777 3333333334444567777777772
Q ss_pred ---cccCccCccc-CCCCCCCCEEEccCCcCCccCCccccC-CCCCCEEEcc----CCCCCCC-----cCccccCCCCCc
Q 004005 340 ---NNLQGHLFSR-NFNLTNLQWLQLEGNRFVGEIPQSLSK-CSSLEGLYLN----NNSLLGK-----IPRWLGNLTRLQ 405 (779)
Q Consensus 340 ---n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~-----~~~~~~~l~~L~ 405 (779)
+.++...... ...+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 3333221111 234566666666666655444333433 5666666664 3333321 111233345555
Q ss_pred EEEccCCc--ccCCcCccc-CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEecc
Q 004005 406 YIIMPNNH--LEGPIPVEF-CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 482 (779)
Q Consensus 406 ~L~l~~n~--~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 482 (779)
+|+++.|. +++.....+ ..+++|++|++++|+++ +......+.++++|++|+++
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-----------------------DEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-----------------------HHHHHHHHTCCTTCCEEEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-----------------------HHHHHHHHhcCcccCeeecc
Confidence 55554322 222211111 12344444444444433 21111113455666666666
Q ss_pred CccCCCc-cCccccCCCCCCEEEccCCcccccccccc-cCCCCCCEEEccC
Q 004005 483 YNRLNGS-IPDWVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSN 531 (779)
Q Consensus 483 ~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~ 531 (779)
+|.+++. .+.....+++|+.|++++|++++.....+ ..++.+....+..
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 6665432 22233445666666666666654322222 2345554444433
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.6e-28 Score=278.52 Aligned_cols=417 Identities=15% Similarity=0.054 Sum_probs=274.2
Q ss_pred CCCCCCCCCEEeCCCCcccccc-----cccccccccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccC-CC-CCCEE
Q 004005 14 GFPHFKSLEHFDMDFTRIALNT-----SFIALNTSFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCS-LV-HLQEL 86 (779)
Q Consensus 14 ~~~~l~~L~~L~L~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~-l~-~L~~L 86 (779)
.+.++++|++|+++++..-... .+..+.......+...+++|++|+|++|.+ ....+..+.. ++ +|++|
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i----~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV----SDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC----CHHHHHHHHHHHGGGCCEE
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEe----cHHHHHHHHHhccccCcEE
Confidence 4568888999999887510000 000011112233333789999999999987 3333444544 34 49999
Q ss_pred eccCCC-CCC-CcchhhcCCCCCCEEEcCCCcccCC----CCcccccCCCCCCEEEccCccccCc---CCcccccCCCCC
Q 004005 87 YIASND-LRG-SLPWCMANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQIP---ISLEPLFNYSRL 157 (779)
Q Consensus 87 ~L~~~~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----l~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L 157 (779)
+|++|. +.. .++....++++|++|++++|.+.+. ++. ...++++|++|++++|.+++. .....+..+++|
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 999886 221 1333445889999999999987644 333 456789999999999987621 111234678999
Q ss_pred cEEEccCCccceeecccccccCCcccccEEecCCCCCCC--CCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCc
Q 004005 158 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG--FIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE 235 (779)
Q Consensus 158 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 235 (779)
++|++++|.+.+.. ..+...++|++|+++...... ...+..+..+++|+.++++.+... .+|.. +..+++|+
T Consensus 223 ~~L~L~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~ 296 (592)
T 3ogk_B 223 VSVKVGDFEILELV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPIL-FPFAAQIR 296 (592)
T ss_dssp CEEECSSCBGGGGH----HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGG-GGGGGGCC
T ss_pred cEEeccCccHHHHH----HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHH-HhhcCCCc
Confidence 99999998876522 224455688999885422221 234456677788889888876432 44544 46788899
Q ss_pred EEEcCCCcCcCCCC-cCcCCCCccCEEEccCCcCCCCCCccccccCCCCcEEECCC-----------CCCCccc-Ccccc
Q 004005 236 TLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM-----------NALDGSI-PSSFG 302 (779)
Q Consensus 236 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~-~~~~~ 302 (779)
+|++++|.+.+... ..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.++... +....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 99999888654322 235778899999988 4443333334444578899999983 4555332 22244
Q ss_pred CCCCCCEEEccCCcCccccchhhhhCCCCCCEEEcc----CcccCcc-----CcccCCCCCCCCEEEccCCc--CCccCC
Q 004005 303 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS----NNNLQGH-----LFSRNFNLTNLQWLQLEGNR--FVGEIP 371 (779)
Q Consensus 303 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~ 371 (779)
.+++|++|+++.+.+++..+..+...+++|++|+++ .+.+++. ....+.++++|++|++++|. +++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 588899999988888766666666668889999996 4556542 12224568889999997544 444333
Q ss_pred ccc-cCCCCCCEEEccCCCCCCC-cCccccCCCCCcEEEccCCcccCC-cCcccCCCCCCcEEEccCCcCccCC
Q 004005 372 QSL-SKCSSLEGLYLNNNSLLGK-IPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISDNNISGSL 442 (779)
Q Consensus 372 ~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (779)
..+ ..+++|++|++++|.+++. .+..+.++++|++|++++|.+++. .+..+..+++|++|++++|++++..
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 333 3478899999998887652 344557788999999999987643 2333457888999999999877543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.4e-25 Score=228.39 Aligned_cols=225 Identities=26% Similarity=0.268 Sum_probs=135.0
Q ss_pred cEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccC
Q 004005 284 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 363 (779)
Q Consensus 284 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 363 (779)
++++++++.++ .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44555555554 233322 345555555555555 33333334455555555555555554455555555555555555
Q ss_pred Cc-CCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCC
Q 004005 364 NR-FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 442 (779)
Q Consensus 364 n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (779)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence 54 44444445555555555555555555444444555555555555555555444444445555555555555443
Q ss_pred CCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCC
Q 004005 443 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN 522 (779)
Q Consensus 443 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 522 (779)
.++...|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..++
T Consensus 167 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 167 ---------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp ---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred ---------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 23333477788888888888888877788888888888888888888877667788888
Q ss_pred CCCEEEccCCcCCC
Q 004005 523 QLQLLDLSNNNLHG 536 (779)
Q Consensus 523 ~L~~L~l~~n~l~~ 536 (779)
+|+.|++++|++..
T Consensus 226 ~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 226 ALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCEEC
T ss_pred ccCEEeccCCCccC
Confidence 88888888888764
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.2e-25 Score=229.70 Aligned_cols=234 Identities=20% Similarity=0.307 Sum_probs=134.7
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEc
Q 004005 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 433 (779)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 433 (779)
+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666666666665 44444555666666666666665 55555666666666666666666 44556666666666666
Q ss_pred cCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccc
Q 004005 434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 513 (779)
Q Consensus 434 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 513 (779)
++|++.+..|..+.. . .+. +.|.++++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 666555444332110 0 000 11344555555555555555 444445555555555555555542
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeee
Q 004005 514 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 593 (779)
Q Consensus 514 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (779)
.+..+..++
T Consensus 221 l~~~l~~l~----------------------------------------------------------------------- 229 (328)
T 4fcg_A 221 LGPAIHHLP----------------------------------------------------------------------- 229 (328)
T ss_dssp CCGGGGGCT-----------------------------------------------------------------------
T ss_pred CchhhccCC-----------------------------------------------------------------------
Confidence 222344444
Q ss_pred ccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCC
Q 004005 594 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 673 (779)
Q Consensus 594 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 673 (779)
+|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|+.+..+++|
T Consensus 230 ------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 230 ------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp ------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred ------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 45555555555555566666666666666666666666666666666667777777766666667666677777
Q ss_pred cEEeccCCcCc
Q 004005 674 EVFSVAYNNLS 684 (779)
Q Consensus 674 ~~L~l~~N~l~ 684 (779)
+.+++..+.+.
T Consensus 304 ~~l~l~~~~~~ 314 (328)
T 4fcg_A 304 CIILVPPHLQA 314 (328)
T ss_dssp CEEECCGGGSC
T ss_pred eEEeCCHHHHH
Confidence 77766665544
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.1e-25 Score=228.13 Aligned_cols=224 Identities=20% Similarity=0.230 Sum_probs=179.5
Q ss_pred CCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEe
Q 004005 401 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 480 (779)
Q Consensus 401 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 480 (779)
.++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------------------~lp~~-~~~l~~L~~L~ 133 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ELPDT-MQQFAGLETLT 133 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------------------CCCSC-GGGGTTCSEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------------------chhHH-HhccCCCCEEE
Confidence 355666666666666 44555555666666666666555 33333 66677788888
Q ss_pred ccCccCCCccCccccCCCCCCEEEccCCccccccccccc---------CCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005 481 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC---------ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 551 (779)
Q Consensus 481 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 551 (779)
+++|.++ .+|..+..+++|+.|++++|++.+..|..+. .+++|++|++++|.++ .+|..+..+
T Consensus 134 Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l------ 205 (328)
T 4fcg_A 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL------ 205 (328)
T ss_dssp EESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC------
T ss_pred CCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC------
Confidence 8888777 5677777788888888888777666666554 4899999999999987 566655543
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECc
Q 004005 552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 631 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 631 (779)
++|++|++++|++++ +|..+..+++|++|+++
T Consensus 206 -----------------------------------------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 206 -----------------------------------------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp -----------------------------------------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred -----------------------------------------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 379999999999995 67789999999999999
Q ss_pred ccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCC
Q 004005 632 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNT 706 (779)
Q Consensus 632 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~ 706 (779)
+|++.+..|..|..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|.++..+.++..+.+..+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888877766654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.6e-27 Score=240.55 Aligned_cols=255 Identities=22% Similarity=0.219 Sum_probs=150.6
Q ss_pred EccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCccc
Q 004005 336 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 415 (779)
Q Consensus 336 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 415 (779)
+++.+.+.......+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 344444433333333344455555555555554444455555555555555555543222 444555555555555444
Q ss_pred CCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcccc
Q 004005 416 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 495 (779)
Q Consensus 416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 495 (779)
+.. ..++|++|++++|++. +..+ ..+++|++|++++|++++..+..+.
T Consensus 94 ~l~-----~~~~L~~L~l~~n~l~-----------------------~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 94 ELL-----VGPSIETLHAANNNIS-----------------------RVSC----SRGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp EEE-----ECTTCCEEECCSSCCS-----------------------EEEE----CCCSSCEEEECCSSCCCSGGGBCTG
T ss_pred ccc-----CCCCcCEEECCCCccC-----------------------CcCc----cccCCCCEEECCCCCCCCccchhhh
Confidence 221 1244444444444433 2221 1246678888888888776666777
Q ss_pred CCCCCCEEEccCCcccccccccc-cCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccc
Q 004005 496 GLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 574 (779)
Q Consensus 496 ~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (779)
.+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------------- 187 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---------------------------------- 187 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----------------------------------
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----------------------------------
Confidence 77888888888888776655555 3577778888877776532110
Q ss_pred cccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEEC
Q 004005 575 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 654 (779)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 654 (779)
..+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++
T Consensus 188 ---------------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 188 ---------------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp ---------------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred ---------------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 1134677777777777743 444777777777777777777 35666777777777777
Q ss_pred CCCcCC-CCCcccccCCCCCcEEeccCC
Q 004005 655 SNNKLN-GKIPHQLVELKTLEVFSVAYN 681 (779)
Q Consensus 655 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N 681 (779)
++|++. +..|..+..+++|+.++++++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 777776 556666677777777777644
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-26 Score=240.10 Aligned_cols=264 Identities=19% Similarity=0.189 Sum_probs=206.6
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccC
Q 004005 356 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 435 (779)
Q Consensus 356 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (779)
++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445666666654444556667788888888888887777788888888888888888876543 77888888888888
Q ss_pred CcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccc
Q 004005 436 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 515 (779)
Q Consensus 436 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 515 (779)
|++++ +...++|++|++++|.+++..+. .+++|+.|++++|++++..+
T Consensus 90 n~l~~-----------------------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQE-----------------------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEE-----------------------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Ccccc-----------------------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 87652 22237899999999999876544 36789999999999998888
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeecc
Q 004005 516 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 595 (779)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (779)
..+..+++|+.|++++|.+++..+..+..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------- 166 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------------------------------------- 166 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------------------------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------------------------------
Confidence 88999999999999999998654443321
Q ss_pred ccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcE
Q 004005 596 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 675 (779)
Q Consensus 596 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 675 (779)
.+++|++|++++|++++. + ....+++|++|++++|++++. |..|..+++|++|++++|+++ .+|..+..+++|+.
T Consensus 167 -~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 -SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp -GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred -ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 134799999999999865 3 334589999999999999965 445999999999999999998 56778899999999
Q ss_pred EeccCCcCc-ccCCCCccccccCCcccccCCCCCC
Q 004005 676 FSVAYNNLS-GEIPEWKAQFATFNESSYEGNTFLC 709 (779)
Q Consensus 676 L~l~~N~l~-~~~p~~~~~~~~~~~~~~~~n~~~c 709 (779)
|++++|+++ +..|.++..+..+..+.+.+++...
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 999999999 5566666777666666666544333
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.1e-23 Score=232.18 Aligned_cols=268 Identities=26% Similarity=0.283 Sum_probs=166.5
Q ss_pred CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 385 (779)
Q Consensus 306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (779)
.++.|++++|.++ .+|..+. ++|+.|++++|.++.+.. .+++|++|++++|++++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 3555666666555 5554332 455555555555553222 34555555555555552 222 3455555555
Q ss_pred cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCccccccc
Q 004005 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 465 (779)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~ 465 (779)
++|.+.+. |. .+++|+.|++++|+++. +|. .+++|++|++++|+++ + +
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-----------------------~-l 156 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-----------------------S-L 156 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-----------------------C-C
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-----------------------C-c
Confidence 55555432 22 33445555555555443 221 1244445555444443 2 2
Q ss_pred CcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccC
Q 004005 466 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 545 (779)
Q Consensus 466 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 545 (779)
+. ..++|+.|++++|.+++ +| ..+++|+.|++++|.+++. |. .+++|+.|++++|.++... ..
T Consensus 157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~~---- 219 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-AL---- 219 (622)
T ss_dssp CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-CC----
T ss_pred CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-CC----
Confidence 22 23567788888888774 44 3457788888888888743 32 2468888888888776322 11
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCC
Q 004005 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 625 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 625 (779)
+++|+.|++++|++++ +| ..+++|
T Consensus 220 ----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 220 ----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred ----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcC
Confidence 1368888899888885 55 455788
Q ss_pred CEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc
Q 004005 626 QTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 695 (779)
Q Consensus 626 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 695 (779)
+.|++++|+++. +|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999998884 454 5678999999999998 6688888899999999999999888777655554
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.2e-27 Score=269.24 Aligned_cols=427 Identities=13% Similarity=0.084 Sum_probs=229.1
Q ss_pred cCCCCcEEeCCCccc-CCCCCC----------cccccccCCCCCCEEeccCCCCCCCcchhhc-CCCCCCEEEcCCC-cc
Q 004005 51 SMPSLKYLSLSYYTL-GTNSSG----------TLDQGLCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSN-QL 117 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l-~~~~~~----------~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~-~l~~L~~L~L~~n-~l 117 (779)
.+++|++|+++++.. .+.... .++.....+++|++|+|++|.+++..+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 777888888877642 111000 0111123567788888887777766666664 6778888888777 44
Q ss_pred cCC-CCcccccCCCCCCEEEccCccccCcCC---cccccCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCC
Q 004005 118 TGS-ISSSPLVHLTSIEELMLSNNYFQIPIS---LEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 193 (779)
Q Consensus 118 ~~~-l~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 193 (779)
.+. ++. .+.++++|++|++++|.+++... ......+++|++|++++|. ......
T Consensus 144 ~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~-------------------- 201 (594)
T 2p1m_B 144 STDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFS-------------------- 201 (594)
T ss_dssp EHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHH--------------------
T ss_pred CHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHH--------------------
Confidence 321 333 34567778888887777653211 1112345566666666654 100000
Q ss_pred CCCCCCchhhcCCCCccEEEccCccCcccCChhhhhcCCCCcEEEcCCCcC-------cCCCCcCcCCCCccCEE-EccC
Q 004005 194 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSL-------AGPFRLPIHSHKRLRQL-DVSN 265 (779)
Q Consensus 194 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L-~l~~ 265 (779)
.++.....+++|++|++++|...+.++.. +..+++|++|.+..+.. .+ .+..+..+++|+.| .+.+
T Consensus 202 ----~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 202 ----ALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWD 275 (594)
T ss_dssp ----HHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBT
T ss_pred ----HHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcc
Confidence 01111233455555555555221123222 24555555555443321 11 11234555666666 2322
Q ss_pred CcCCCCCCccccccCCCCcEEECCCCCCCccc-CccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccC-----
Q 004005 266 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI-PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN----- 339 (779)
Q Consensus 266 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~----- 339 (779)
... +.++.. ...+++|++|++++|.+++.. +..+..+++|++|++++| +.+.....+...+++|++|++..
T Consensus 276 ~~~-~~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 276 AVP-AYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp CCG-GGGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred cch-hhHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 211 122221 122567777777777765432 223457788888888877 43333334444578888888833
Q ss_pred ----cccCccCcccCC-CCCCCCEEEccCCcCCccCCcccc-CCCCCCEEEcc--C----CCCCCCc-----CccccCCC
Q 004005 340 ----NNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQSLS-KCSSLEGLYLN--N----NSLLGKI-----PRWLGNLT 402 (779)
Q Consensus 340 ----n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~-----~~~~~~l~ 402 (779)
+.+++.....+. .+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++.. +..+..++
T Consensus 353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence 344332222222 478888888887777755444443 57888888888 3 3444211 11256678
Q ss_pred CCcEEEccCCcccCCcCcccCC-CCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEec
Q 004005 403 RLQYIIMPNNHLEGPIPVEFCQ-LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481 (779)
Q Consensus 403 ~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 481 (779)
+|+.|++++ .+++.....+.. +++|+.|++++|.+++.... ....++++|+.|++
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------------------~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------------------HVLSGCDSLRKLEI 488 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------------------HHHHHCTTCCEEEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------------------HHHhcCCCcCEEEC
Confidence 899999976 555443344443 78889999988877532111 11134566666666
Q ss_pred cCccCCCccCc-cccCCCCCCEEEccCCcccccccccc-cCCCCCCEEEccCC
Q 004005 482 SYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNN 532 (779)
Q Consensus 482 ~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n 532 (779)
++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 66666433222 23345667777777776643333333 34566655555444
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-25 Score=244.46 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458 (779)
Q Consensus 379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 458 (779)
+|+.|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 44444444444444444444444444445544444443332 4445555555555554442211 12333333333
Q ss_pred cccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc-CCCCCCEEEccCCcCC
Q 004005 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC-ELNQLQLLDLSNNNLH 535 (779)
Q Consensus 459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~ 535 (779)
|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 109 N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 333222111 235566666666666655555566666666666666666655555443 4556666666666554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.8e-26 Score=236.51 Aligned_cols=246 Identities=23% Similarity=0.274 Sum_probs=155.6
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCC-CCcCcccc-------CCCCCcEEEccCCcccCCcCccc--
Q 004005 353 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL-GKIPRWLG-------NLTRLQYIIMPNNHLEGPIPVEF-- 422 (779)
Q Consensus 353 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~-- 422 (779)
.++|+.|++++|.+ ..|..+... |+.|++++|.+. ...+..+. ++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 333333322 555555555542 12233222 45666666666666665555544
Q ss_pred CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccC-----CCCccEEeccCccCCCccCccccCC
Q 004005 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN-----CSSLVTLDLSYNRLNGSIPDWVDGL 497 (779)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~~L~~L~L~~n~i~~~~~~~~~~l 497 (779)
..+++|++|++++|++++. +.. +.. +++|++|++++|++.+..+..+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~------------------------~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAW------------------------LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSH------------------------HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred hcCCCccEEEccCCCCcch-hHH------------------------HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5666666666666666543 221 222 2677777777777777666777777
Q ss_pred CCCCEEEccCCccccc--ccccc--cCCCCCCEEEccCCcCCCCC--C-cccccCcccccccCCCCCCcchhhhhhcccc
Q 004005 498 SQLSHLILGHNNLEGE--VSVQL--CELNQLQLLDLSNNNLHGPI--P-PCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 570 (779)
Q Consensus 498 ~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (779)
++|+.|++++|++.+. .+..+ ..+++|++|++++|.+++.. + ..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------------------- 224 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---------------------------- 224 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH----------------------------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH----------------------------
Confidence 7788888887776643 22233 67778888888888775211 0 000
Q ss_pred cccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCc-ccccCCCCCCEEECcccccccCCCCCCCCCCCC
Q 004005 571 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 649 (779)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 649 (779)
..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|
T Consensus 225 -------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 225 -------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp -------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred -------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 112468888888888876654 44666788888888888888 5666655 788
Q ss_pred CEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005 650 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685 (779)
Q Consensus 650 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 685 (779)
++|++++|++++. |. +..+++|++|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888888888865 55 7888888888888888874
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.3e-25 Score=242.35 Aligned_cols=247 Identities=19% Similarity=0.194 Sum_probs=203.5
Q ss_pred CCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEE
Q 004005 400 NLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479 (779)
Q Consensus 400 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 479 (779)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ ...+++|+.|++++|.+.+. + ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C-----CCCCcCEE
Confidence 34589999999999998888899999999999999999987665 55588999999999998642 2 33899999
Q ss_pred eccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCc
Q 004005 480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDE 559 (779)
Q Consensus 480 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (779)
++++|.+++..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------------- 166 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------- 166 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------------
Confidence 9999999976554 4588999999999999888888999999999999999998766655531
Q ss_pred chhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCC
Q 004005 560 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI 639 (779)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 639 (779)
.+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++..
T Consensus 167 -------------------------------------~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 167 -------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp -------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC
T ss_pred -------------------------------------hCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCC
Confidence 134799999999999865 3 3446899999999999999755
Q ss_pred CCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc-cCCCCccccccCCccccc-------CCCCCCCC
Q 004005 640 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG-EIPEWKAQFATFNESSYE-------GNTFLCGL 711 (779)
Q Consensus 640 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~~~~~~~~~~~-------~n~~~c~~ 711 (779)
| .|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++| .+|.++..+..+..+... ++++.|.|
T Consensus 208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence 5 58999999999999999995 67778999999999999999994 455555555555544443 67777766
Q ss_pred C
Q 004005 712 P 712 (779)
Q Consensus 712 ~ 712 (779)
+
T Consensus 286 ~ 286 (487)
T 3oja_A 286 P 286 (487)
T ss_dssp T
T ss_pred C
Confidence 4
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.1e-23 Score=230.85 Aligned_cols=269 Identities=25% Similarity=0.283 Sum_probs=206.0
Q ss_pred CCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEE
Q 004005 281 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 360 (779)
Q Consensus 281 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 360 (779)
..++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.++++.. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 36899999999998 6677665 89999999999998 7776 47999999999999986443 679999999
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCcc
Q 004005 361 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG 440 (779)
Q Consensus 361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (779)
+++|.+.+. |. .+++|+.|++++|.++. +|.. +++|++|++++|.+++. |. .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 999999864 33 56899999999999985 4443 48999999999999853 32 35678888888888774
Q ss_pred CCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccC
Q 004005 441 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCE 520 (779)
Q Consensus 441 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 520 (779)
.. ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. ++. .
T Consensus 176 l~----------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~ 219 (622)
T 3g06_A 176 LP----------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---L 219 (622)
T ss_dssp CC----------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---C
T ss_pred Cc----------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---C
Confidence 22 124667777777777764 333 23677788888887773 332 2
Q ss_pred CCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccC
Q 004005 521 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSL 600 (779)
Q Consensus 521 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (779)
+++|+.|++++|.+++. |.. +++
T Consensus 220 ~~~L~~L~Ls~N~L~~l-p~~--------------------------------------------------------l~~ 242 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSL-PVL--------------------------------------------------------PSE 242 (622)
T ss_dssp CTTCCEEECCSSCCSCC-CCC--------------------------------------------------------CTT
T ss_pred CCCCCEEEccCCccCcC-CCC--------------------------------------------------------CCc
Confidence 46788888888887642 211 236
Q ss_pred cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC
Q 004005 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 671 (779)
Q Consensus 601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 671 (779)
|+.|++++|+++. +|. .+++|+.|+|++|+++ .+|..|..+++|+.|+|++|++++..|..+..++
T Consensus 243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8888888888884 555 5678899999999998 6677888899999999999999887777665443
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=213.37 Aligned_cols=210 Identities=25% Similarity=0.301 Sum_probs=149.2
Q ss_pred CCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEec
Q 004005 402 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 481 (779)
Q Consensus 402 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 481 (779)
+++++|++++|.+++..+..+.++++|++|++++|++.+. +...|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L 83 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLIL 83 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEEC
Confidence 3455666666655554444555666666666666655422 2223566677777777
Q ss_pred cCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC-CCcccccCcccccccCCCCCCcc
Q 004005 482 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQ 560 (779)
Q Consensus 482 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 560 (779)
++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-------------- 149 (276)
T 2z62_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-------------- 149 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--------------
T ss_pred CCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC--------------
Confidence 77777766666677777777777777777766555677777777777777777653 355554433
Q ss_pred hhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCC----EEECcccccc
Q 004005 561 FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ----TLNLSHNNLT 636 (779)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~ 636 (779)
+|++|++++|++++..+..+..+++|+ +|++++|+++
T Consensus 150 ---------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 150 ---------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp ---------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred ---------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 688888888888776666776666666 8999999998
Q ss_pred cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 637 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
+..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|+++|.||.
T Consensus 191 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 191 FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 766665554 4899999999999977777788999999999999999999875
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.7e-25 Score=229.13 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=91.0
Q ss_pred ccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCc-cCcccCC-------CCCCCCEEEccCCcCCccCCc
Q 004005 301 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNF-------NLTNLQWLQLEGNRFVGEIPQ 372 (779)
Q Consensus 301 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~ 372 (779)
++..++|+.+++++|.+ .+|..+... |+.|++++|.+.. ..+..+. ++++|++|++++|++.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 45567788888888888 677666542 7777888887743 2222222 577888888888888877776
Q ss_pred cc--cCCCCCCEEEccCCCCCCCcCccccCC-----CCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005 373 SL--SKCSSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 373 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (779)
.+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 55 7778888888888887765 6555554 66777777777666655566666666666666666544
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.7e-23 Score=208.35 Aligned_cols=208 Identities=24% Similarity=0.284 Sum_probs=180.1
Q ss_pred CCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEc
Q 004005 426 DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLIL 505 (779)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 505 (779)
...+.+++++++++.++... +.+++.|++++|.+.+ ++...|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35789999999998644332 3689999999999864 55555899999999999999999777777889999999999
Q ss_pred cCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeee
Q 004005 506 GHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFT 585 (779)
Q Consensus 506 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (779)
++|++++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------- 133 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--------------------------------------- 133 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------------------
Confidence 99999987777889999999999999999887777665543
Q ss_pred eccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcc
Q 004005 586 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 665 (779)
Q Consensus 586 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 665 (779)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus 134 --------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 134 --------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp --------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred --------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 799999999999977667789999999999999999988888899999999999999999977777
Q ss_pred cccCCCCCcEEeccCCcCcccCCC
Q 004005 666 QLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 666 ~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
.|..+++|+.|++++|++.|.++.
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSSS
T ss_pred HhccccCCCEEEecCCCeeCCCcc
Confidence 888999999999999999998874
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.5e-27 Score=270.58 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=44.7
Q ss_pred cCcceEEccCCcccccCcccc-cCCCCCCEEECcccccccCCCC-CCCCCCCCCEEECCCCcCCCCCcccc-cCCCCCcE
Q 004005 599 SLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEV 675 (779)
Q Consensus 599 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~ 675 (779)
++|+.|++++|++++..+..+ .++++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.++.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 356666666666654433333 4566666666666666432222 23345666666666666643222223 33555555
Q ss_pred EeccCCc
Q 004005 676 FSVAYNN 682 (779)
Q Consensus 676 L~l~~N~ 682 (779)
..+..+.
T Consensus 536 ~~~~~~~ 542 (594)
T 2p1m_B 536 EVIDERG 542 (594)
T ss_dssp EEECSSS
T ss_pred EEecCCC
Confidence 5554443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6e-23 Score=206.83 Aligned_cols=206 Identities=23% Similarity=0.252 Sum_probs=148.0
Q ss_pred cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529 (779)
Q Consensus 450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 529 (779)
..+.++++++.++ .+|.. + .++++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4567777777764 34543 2 256777778777777666667777777888888777777665666677777788888
Q ss_pred cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005 530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 609 (779)
Q Consensus 530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 609 (779)
++|.+++..+..|..++ +|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n 119 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLV-----------------------------------------------------NLAELRLDRN 119 (270)
T ss_dssp CSSCCCCCCTTTTTTCS-----------------------------------------------------SCCEEECCSS
T ss_pred CCCcCCcCCHhHccccc-----------------------------------------------------CCCEEECCCC
Confidence 77777765555554433 6777778777
Q ss_pred cccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 610 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+++...+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 77766666677777788888888777766666677777788888887777766666677777778888887777766655
Q ss_pred CccccccCCcccccCCCCCCCCC
Q 004005 690 WKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 690 ~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
.+..+..+..+.+.+|||.|+|+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccccCCCEEEecCCCeeCCCc
Confidence 56667777777777787777775
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.7e-23 Score=210.44 Aligned_cols=208 Identities=26% Similarity=0.287 Sum_probs=177.0
Q ss_pred cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529 (779)
Q Consensus 450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 529 (779)
+++.|++++|.+.+ ++...|.++++|++|++++|.+++..+..+.++++|+.|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45555555555533 33334888999999999999999888888999999999999999999888888999999999999
Q ss_pred cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005 530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 609 (779)
Q Consensus 530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 609 (779)
++|.+.+..+..+..+ ++|++|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n 134 (276)
T 2z62_A 108 VETNLASLENFPIGHL-----------------------------------------------------KTLKELNVAHN 134 (276)
T ss_dssp TTSCCCCSTTCCCTTC-----------------------------------------------------TTCCEEECCSS
T ss_pred CCCCccccCchhcccC-----------------------------------------------------CCCCEEECcCC
Confidence 9999987666555443 37999999999
Q ss_pred ccccc-CcccccCCCCCCEEECcccccccCCCCCCCCCCCCC----EEECCCCcCCCCCcccccCCCCCcEEeccCCcCc
Q 004005 610 KLIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 684 (779)
Q Consensus 610 ~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 684 (779)
++.+. +|..+..+++|++|++++|++++..+..|..+++|+ +|++++|++.+..+..+.. .+|+.|++++|.++
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence 99864 588999999999999999999988888888888777 9999999999766655544 58999999999999
Q ss_pred ccCCCCccccccCCcccccCCCCCCCCC
Q 004005 685 GEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 685 ~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
+..+..+..+.++..+.+.+|++.|+|+
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCC
Confidence 8777777889999999999999999986
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.9e-22 Score=204.77 Aligned_cols=206 Identities=24% Similarity=0.263 Sum_probs=160.9
Q ss_pred CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCE
Q 004005 423 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH 502 (779)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 502 (779)
.+++++++++++++.++..++.. +++++.|++++|.+.+..+ ..|..+++|++|++++|.+++..+. ..+++|+.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 34455555555555554333222 2455555555555543333 3488889999999999999865442 67899999
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhccccccccccccccee
Q 004005 503 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIF 582 (779)
Q Consensus 503 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (779)
|++++|+++ .+|..+..+++|++|++++|++++..+..|..++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~------------------------------------ 124 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------------------------------------ 124 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC------------------------------------
Confidence 999999998 5667788899999999999999877777776644
Q ss_pred eeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCC
Q 004005 583 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 662 (779)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 662 (779)
+|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus 125 -----------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 125 -----------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp -----------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred -----------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 7999999999999777777899999999999999999777778899999999999999998 6
Q ss_pred CcccccCCCCCcEEeccCCcCcccCC
Q 004005 663 IPHQLVELKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 663 ~~~~~~~l~~L~~L~l~~N~l~~~~p 688 (779)
+|..+....+|+.+++++|++.|.|.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cChhhcccccCCeEEeCCCCccCcCc
Confidence 77778888899999999999998764
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.4e-22 Score=205.59 Aligned_cols=205 Identities=26% Similarity=0.250 Sum_probs=178.7
Q ss_pred cccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEE
Q 004005 448 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 527 (779)
Q Consensus 448 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 527 (779)
.+++++++++++.++ .+|.. + .++++.|++++|.+++..+..|..+++|+.|++++|.+++..+. ..+++|+.|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 568999999999985 56655 3 26899999999999988888999999999999999999865443 789999999
Q ss_pred EccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEcc
Q 004005 528 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607 (779)
Q Consensus 528 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 607 (779)
++++|.++ .+|..+.. +++|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~-----------------------------------------------------l~~L~~L~l~ 108 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT-----------------------------------------------------LPALTVLDVS 108 (290)
T ss_dssp ECCSSCCS-SCCCCTTT-----------------------------------------------------CTTCCEEECC
T ss_pred ECCCCcCC-cCchhhcc-----------------------------------------------------CCCCCEEECC
Confidence 99999987 34444433 3479999999
Q ss_pred CCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccC
Q 004005 608 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 687 (779)
Q Consensus 608 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 687 (779)
+|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|++|++++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 99999877788999999999999999999888888999999999999999999777777899999999999999999 66
Q ss_pred CCCccccccCCcccccCCCCCCCCCC
Q 004005 688 PEWKAQFATFNESSYEGNTFLCGLPL 713 (779)
Q Consensus 688 p~~~~~~~~~~~~~~~~n~~~c~~~l 713 (779)
|..+.....+..+.+.+|||.|+|..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred ChhhcccccCCeEEeCCCCccCcCcc
Confidence 77677778889999999999999864
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.6e-22 Score=200.49 Aligned_cols=209 Identities=23% Similarity=0.285 Sum_probs=163.1
Q ss_pred ccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCcc
Q 004005 398 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477 (779)
Q Consensus 398 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 477 (779)
...+++|+.|++++|.+... ..+..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~------------------------~~--~l~~l~~L~ 88 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD------------------------IS--ALKELTNLT 88 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC------------------------CG--GGTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC------------------------ch--hhcCCCCCC
Confidence 34556667777776666532 235566666666666665542 11 267788899
Q ss_pred EEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCC
Q 004005 478 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSP 557 (779)
Q Consensus 478 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 557 (779)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------- 157 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT----------- 157 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------
T ss_pred EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------
Confidence 999999998877777788889999999999999877777788889999999999988876666555443
Q ss_pred CcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccccc
Q 004005 558 DEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 637 (779)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 637 (779)
+|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 158 ------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 158 ------------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp ------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ------------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 78999999999987777778889999999999999998
Q ss_pred CCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcccc
Q 004005 638 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF 694 (779)
Q Consensus 638 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~ 694 (779)
..+..|..+++|++|++++|++.+. +++|+.+++..|.++|.+|.+++.+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 8888889999999999999988754 4578888999999999988865444
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.8e-21 Score=193.72 Aligned_cols=181 Identities=25% Similarity=0.276 Sum_probs=152.1
Q ss_pred ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 004005 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530 (779)
Q Consensus 451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 530 (779)
.+.++++++.+. .+|.. +. +.++.|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344455544442 34433 22 578899999999988888888999999999999999998888888999999999999
Q ss_pred CCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCc
Q 004005 531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 610 (779)
Q Consensus 531 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 610 (779)
+|.+++..+..|..++ +|++|++++|+
T Consensus 92 ~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~ 118 (251)
T 3m19_A 92 NNQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGNQ 118 (251)
T ss_dssp TSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcccccChhHhcccC-----------------------------------------------------CCCEEEcCCCc
Confidence 9999877766665543 79999999999
Q ss_pred ccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 611 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 688 (779)
+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+++|.+.
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 997777778999999999999999998888889999999999999999998888889999999999999999998744
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=8.3e-21 Score=191.26 Aligned_cols=165 Identities=25% Similarity=0.264 Sum_probs=149.6
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--- 133 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT--- 133 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC---
Confidence 67789999999999999863 4688999999999999999988888889999999999999999987777666544
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 629 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 629 (779)
+|++|++++|++++..+..+..+++|++|+
T Consensus 134 --------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 134 --------------------------------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------CCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 799999999999987777789999999999
Q ss_pred CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
+++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|+++|.+|.
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 999999988888899999999999999999988888899999999999999999999885
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.2e-20 Score=187.71 Aligned_cols=181 Identities=23% Similarity=0.292 Sum_probs=164.1
Q ss_pred CCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccC
Q 004005 474 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 553 (779)
Q Consensus 474 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 553 (779)
...+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------- 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence 45789999999998 4565554 6899999999999988888899999999999999999988777776544
Q ss_pred CCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccc
Q 004005 554 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 633 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 633 (779)
+|++|++++|++++..+..|..+++|++|+|++|
T Consensus 84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 7999999999999887788999999999999999
Q ss_pred ccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCC
Q 004005 634 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 710 (779)
Q Consensus 634 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~ 710 (779)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+.++..+.+.+|++.|+
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99988888899999999999999999988777899999999999999999988887888899999999999999998
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.2e-20 Score=186.25 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=40.1
Q ss_pred Ccc-eEEccCCcccccCcccccCCCCCCEEECcccc-cccCCCCCCCCC-CCCCEEECCCCcCCCCCcccccCCCCCcEE
Q 004005 600 LLS-GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLEVF 676 (779)
Q Consensus 600 ~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 676 (779)
+|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|.++ ++|++|++++|++++..+. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCcee
Confidence 455 5555555555322233333 555566666653 554555555555 5666666666666532222 34555555
Q ss_pred eccCC
Q 004005 677 SVAYN 681 (779)
Q Consensus 677 ~l~~N 681 (779)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 55544
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=198.82 Aligned_cols=209 Identities=22% Similarity=0.261 Sum_probs=127.7
Q ss_pred CCCcEEEccCCcccCCcCccc--CCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEE
Q 004005 402 TRLQYIIMPNNHLEGPIPVEF--CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 479 (779)
Q Consensus 402 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 479 (779)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ++...+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------------------~~~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------------------LAELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------------------HHHHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------------------hHHHHhhhccCCCEE
Confidence 445555665555555555554 5566666666666655532211 011113456677777
Q ss_pred eccCccCCCccCccccCCCCCCEEEccCCccccc--c--cccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005 480 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE--V--SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 555 (779)
Q Consensus 480 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 555 (779)
++++|++.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++...+... ..
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~l---------- 219 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA-AL---------- 219 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-HH----------
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-HH----------
Confidence 7777777766666777777777777777776532 1 1223566777777777777642111000 00
Q ss_pred CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCC---CCCCEEECcc
Q 004005 556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL---TRIQTLNLSH 632 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~Ls~ 632 (779)
...+++|++||+++|++++..|..+..+ ++|++|+|++
T Consensus 220 ---------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 220 ---------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ---------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred ---------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 0112467777888887776666666555 5788888888
Q ss_pred cccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005 633 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685 (779)
Q Consensus 633 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 685 (779)
|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8887 4565553 6788888888888754 33 5677888888888888763
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=5e-22 Score=209.32 Aligned_cols=260 Identities=18% Similarity=0.160 Sum_probs=141.7
Q ss_pred EEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcC----ccccCCC-CCcEEEccCCcccCCcCcccCCC-----CC
Q 004005 358 WLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP----RWLGNLT-RLQYIIMPNNHLEGPIPVEFCQL-----DS 427 (779)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~ 427 (779)
.++++.|.+.+..|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777766666556668888888888776555 5667777 78888888888776655555443 77
Q ss_pred CcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCC-CCccEEeccCccCCCccCccc----cC-CCCCC
Q 004005 428 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC-SSLVTLDLSYNRLNGSIPDWV----DG-LSQLS 501 (779)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~ 501 (779)
|++|++++|.+++..+..+. ..+..+ ++|++|++++|.+++..+..+ .. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~--------------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELV--------------------KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHH--------------------HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHH--------------------HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 78888887777654332111 012223 455555555555554333322 22 23566
Q ss_pred EEEccCCcccccc----cccccCCC-CCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccc
Q 004005 502 HLILGHNNLEGEV----SVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEK 576 (779)
Q Consensus 502 ~L~L~~n~l~~~~----~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (779)
+|++++|.+++.. +..+..++ +|++|++++|.+++..+..++..-
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------ 191 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------ 191 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------
Confidence 6666666555322 22233333 566666666655443332221100
Q ss_pred cccceeeeeeccceeeeccccc-cCcceEEccCCccccc----CcccccC-CCCCCEEECcccccccCCC----CCCCCC
Q 004005 577 QNHEIFEFTTKNIAYIYQGKVL-SLLSGLDLSCNKLIGH----IPPQIGN-LTRIQTLNLSHNNLTGSIP----STFSNL 646 (779)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l 646 (779)
... ++|++|||++|++++. ++..+.. .++|++|+|++|++++..+ ..+..+
T Consensus 192 -------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 192 -------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp -------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred -------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 001 2456666666665542 2333333 2356666666666654322 234555
Q ss_pred CCCCEEECCCCcCCCCCc-------ccccCCCCCcEEeccCCcCccc
Q 004005 647 KHVESLDLSNNKLNGKIP-------HQLVELKTLEVFSVAYNNLSGE 686 (779)
Q Consensus 647 ~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~ 686 (779)
++|++|++++|++....+ ..+..+++|+.||+++|++...
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 666666666666433222 2344555666666666666544
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.4e-20 Score=181.62 Aligned_cols=196 Identities=21% Similarity=0.202 Sum_probs=111.6
Q ss_pred CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcc-cCccCcccCCCCCCCCEEEccC-CcCCccCCccccCCCCCCEE
Q 004005 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN-LQGHLFSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGL 383 (779)
Q Consensus 306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 383 (779)
+|++|++++|.++ .++...+.++++|++|++++|+ ++.+.+..|.++++|++|++++ |.+....+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4555555555554 3443333445555555555554 4444444555555666666655 55555444555566666666
Q ss_pred EccCCCCCCCcCccccCCCCCc---EEEccCC-cccCCcCcccCCCCCCc-EEEccCCcCccCCCCccCcccccEEEccC
Q 004005 384 YLNNNSLLGKIPRWLGNLTRLQ---YIIMPNN-HLEGPIPVEFCQLDSLQ-ILDISDNNISGSLPSCFHPLSIKQVHLSK 458 (779)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 458 (779)
++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|+++.
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------------------ 170 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------------------ 170 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------------------
Confidence 666666553 333 55555555 6666666 55555445566666666 66666665553
Q ss_pred cccccccCcccccCCCCccEEeccCcc-CCCccCccccCC-CCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 004005 459 NMLHGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPDWVDGL-SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 532 (779)
Q Consensus 459 n~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 532 (779)
++..+|.. ++|+.|++++|+ +++..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 171 ------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 ------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 33333444 566777777773 665555666666 7777777777777643332 4567777777665
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=193.77 Aligned_cols=56 Identities=30% Similarity=0.494 Sum_probs=38.6
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 660 (779)
+|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 5677777777776 4555553 6777777777777744 33 567777778888887775
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.3e-21 Score=208.40 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=65.6
Q ss_pred ccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCC---CCCcchhh-------cCCCCCCEEEc
Q 004005 43 SFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDL---RGSLPWCM-------ANMTSLRILDV 112 (779)
Q Consensus 43 ~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l---~~~~~~~~-------~~l~~L~~L~L 112 (779)
.++..+. .+++|++|+|++|.+++.....++..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|++
T Consensus 23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3455666 7788888888888875444444556677788888888887643 33444444 57777777777
Q ss_pred CCCcccC----CCCcccccCCCCCCEEEccCcccc
Q 004005 113 SSNQLTG----SISSSPLVHLTSIEELMLSNNYFQ 143 (779)
Q Consensus 113 ~~n~l~~----~l~~~~l~~l~~L~~L~l~~n~~~ 143 (779)
++|.+.+ .++. .+.++++|++|++++|.++
T Consensus 102 s~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 102 SDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCH
T ss_pred CCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCC
Confidence 7777764 2444 5666777777777777664
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=8.2e-22 Score=207.65 Aligned_cols=107 Identities=20% Similarity=0.100 Sum_probs=58.0
Q ss_pred EEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCc----ccCCCCC-CCCEEEccCCcCCccCCccccCC-----C
Q 004005 309 ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF----SRNFNLT-NLQWLQLEGNRFVGEIPQSLSKC-----S 378 (779)
Q Consensus 309 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~ 378 (779)
.++++.|.+.+.+|... ...++|++|++++|.+.+... ..+..++ +|++|++++|.+.+..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 34566676665444433 334457777777777665554 4455565 66666666666665544444432 5
Q ss_pred CCCEEEccCCCCCCCcCcc----ccCC-CCCcEEEccCCcccC
Q 004005 379 SLEGLYLNNNSLLGKIPRW----LGNL-TRLQYIIMPNNHLEG 416 (779)
Q Consensus 379 ~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~ 416 (779)
+|++|++++|.+.+..+.. +..+ ++|++|++++|.+++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 6666666666555433332 2222 455555555555443
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.9e-22 Score=214.98 Aligned_cols=166 Identities=18% Similarity=0.222 Sum_probs=108.2
Q ss_pred ccCCCCccEEeccCccCCCccCccc----cCC---------CCCCEEEccCCcccc-ccc---ccccCCCCCCEEEccCC
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWV----DGL---------SQLSHLILGHNNLEG-EVS---VQLCELNQLQLLDLSNN 532 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~----~~l---------~~L~~L~L~~n~l~~-~~~---~~l~~l~~L~~L~l~~n 532 (779)
+..+++|++|++++|.+....+..+ ..+ ++|++|++++|+++. ..+ ..+..+++|++|++++|
T Consensus 118 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4455666666666666543322222 222 677777777777752 222 34556777777777777
Q ss_pred cCCCC-----CCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEcc
Q 004005 533 NLHGP-----IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 607 (779)
Q Consensus 533 ~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 607 (779)
.++.. .+..+. .+++|++|+|+
T Consensus 198 ~l~~~g~~~l~~~~l~-----------------------------------------------------~~~~L~~L~Ls 224 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLA-----------------------------------------------------YCQELKVLDLQ 224 (386)
T ss_dssp CCCHHHHHHHHHTTGG-----------------------------------------------------GCTTCCEEECC
T ss_pred CCCHhHHHHHHHHHhh-----------------------------------------------------cCCCccEEECc
Confidence 66410 111111 13467888888
Q ss_pred CCccc----ccCcccccCCCCCCEEECcccccccC----CCCCC--CCCCCCCEEECCCCcCCC----CCcccc-cCCCC
Q 004005 608 CNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGS----IPSTF--SNLKHVESLDLSNNKLNG----KIPHQL-VELKT 672 (779)
Q Consensus 608 ~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~ 672 (779)
+|.++ ..+|..+..+++|++|+|++|++++. ++..+ ..+++|++|+|++|+++. .+|..+ ..+++
T Consensus 225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 88875 45677778888888888888888754 34555 337888888888888886 366666 55788
Q ss_pred CcEEeccCCcCcccCC
Q 004005 673 LEVFSVAYNNLSGEIP 688 (779)
Q Consensus 673 L~~L~l~~N~l~~~~p 688 (779)
|++|++++|++++..+
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 8999999998887654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.5e-21 Score=204.03 Aligned_cols=252 Identities=18% Similarity=0.183 Sum_probs=137.6
Q ss_pred CCEEEccCCcCCccCCccccCC--CCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCC-cCcccCCCCCCcEEE
Q 004005 356 LQWLQLEGNRFVGEIPQSLSKC--SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILD 432 (779)
Q Consensus 356 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~ 432 (779)
++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 444555544433 2223333 4555555555555443333 33455555555555555433 444455555555555
Q ss_pred ccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCc-cCCCc-cCccccCCCCCCEEEccCC-c
Q 004005 433 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNGS-IPDWVDGLSQLSHLILGHN-N 509 (779)
Q Consensus 433 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~ 509 (779)
+++|.+++ ..+.. +..+++|++|++++| .+++. .+..+..+++|++|++++| .
T Consensus 125 L~~~~l~~-----------------------~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSD-----------------------PIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCH-----------------------HHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCH-----------------------HHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 55554432 11111 444566666666666 44431 3444555666666666666 6
Q ss_pred cccc-ccccccCCC-CCCEEEccCCc--CC-CCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeee
Q 004005 510 LEGE-VSVQLCELN-QLQLLDLSNNN--LH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 584 (779)
Q Consensus 510 l~~~-~~~~l~~l~-~L~~L~l~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (779)
+++. .+..+..++ +|++|++++|. ++ +.++..+
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------------------------------------------ 218 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV------------------------------------------ 218 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH------------------------------------------
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH------------------------------------------
Confidence 6543 344455666 67777776663 22 1111111
Q ss_pred eeccceeeeccccccCcceEEccCCc-ccccCcccccCCCCCCEEECcccc-cccCCCCCCCCCCCCCEEECCCCcCCCC
Q 004005 585 TTKNIAYIYQGKVLSLLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGK 662 (779)
Q Consensus 585 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 662 (779)
..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +...
T Consensus 219 -----------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 219 -----------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp -----------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred -----------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 113467777777777 555666677777888888888885 22221225677888888888888 4322
Q ss_pred CcccccCC-CCCcEEeccCCcCcccCCCCcc
Q 004005 663 IPHQLVEL-KTLEVFSVAYNNLSGEIPEWKA 692 (779)
Q Consensus 663 ~~~~~~~l-~~L~~L~l~~N~l~~~~p~~~~ 692 (779)
.+..+ .+++.|++++|++++..|.+..
T Consensus 287 ---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 287 ---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ---HHHHHHhhCcceEEecccCccccCCccc
Confidence 23333 2355666888888888776543
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.2e-19 Score=186.03 Aligned_cols=195 Identities=22% Similarity=0.337 Sum_probs=143.9
Q ss_pred cCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccE
Q 004005 399 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 478 (779)
Q Consensus 399 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 478 (779)
..+++|++|++++|.+... + .+..+++|++|++++|.+.+. +. +..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~~--~~~l~~L~~ 89 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------AP--LKNLTKITE 89 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------GG--GTTCCSCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------hh--HccCCCCCE
Confidence 3456677777777766642 2 456666677777766665532 22 667788888
Q ss_pred EeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCC
Q 004005 479 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 558 (779)
Q Consensus 479 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 558 (779)
|++++|.+++. ..+..+++|+.|++++|++++.. .+..+++|+.|++++|.+++..+ +..
T Consensus 90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------- 149 (308)
T 1h6u_A 90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG-------------- 149 (308)
T ss_dssp EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------------
T ss_pred EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC--------------
Confidence 88888888753 35778888888888888887543 37888888888888888765432 222
Q ss_pred cchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccC
Q 004005 559 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS 638 (779)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 638 (779)
+++|++|++++|++++. +. +..+++|++|++++|++++.
T Consensus 150 ---------------------------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 150 ---------------------------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 34788899999988853 33 88889999999999999865
Q ss_pred CCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCccc
Q 004005 639 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 686 (779)
Q Consensus 639 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 686 (779)
.+ +..+++|++|++++|++.+..+ +..+++|+.|++++|++++.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 43 7888999999999999986543 78889999999999998853
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=4.3e-20 Score=179.09 Aligned_cols=196 Identities=21% Similarity=0.274 Sum_probs=153.6
Q ss_pred cEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCC
Q 004005 477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 556 (779)
Q Consensus 477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 556 (779)
+.+++++++++. +|..+. ++++.|++++|++++..+..|..+++|+.|++++|.+++..|..|..++
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 567888888874 454443 6788999999998877777888889999999999998877777776544
Q ss_pred CCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccc
Q 004005 557 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 636 (779)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 636 (779)
+|++|+|++|+++...+..|.++++|++|+|++|+++
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7999999999999766667899999999999999999
Q ss_pred cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCCCC
Q 004005 637 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 716 (779)
Q Consensus 637 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~~c 716 (779)
+..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|.|+- .++..+ +..++..- ....|
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l--~~l~~~----l~~~~~~~--~~~~C 189 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL--KWLADY----LHTNPIET--SGARC 189 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG--HHHHHH----HHHCCCBC--SCCBE
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc--HHHHHH----HHhCCCCc--cCCCc
Confidence 88899999999999999999999988888899999999999999999988763 222221 11122111 11248
Q ss_pred CCCCCCCCCCCCCCCCCCcc
Q 004005 717 RSPATMPEASIGNEQDDNLI 736 (779)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~ 736 (779)
..|....++.+.+...+++.
T Consensus 190 ~~P~~l~g~~l~~l~~~~~~ 209 (220)
T 2v9t_B 190 TSPRRLANKRIGQIKSKKFR 209 (220)
T ss_dssp EESGGGTTCBGGGSCGGGCC
T ss_pred CCchHHcCCchhhCCHHHCc
Confidence 88888888777666655553
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.9e-21 Score=203.32 Aligned_cols=126 Identities=18% Similarity=0.184 Sum_probs=64.9
Q ss_pred CCCEEEccCCcCccccchhhhhCC--CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCcc-CCccccCCCCCCE
Q 004005 306 FLQILDLSNNHLTGEIPEHLAVGC--VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE-IPQSLSKCSSLEG 382 (779)
Q Consensus 306 ~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 382 (779)
.++.++++++.+.. .. +..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~---~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH---HH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH---HH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35677777766541 11 1223 5666677766666654433 33456666666666665533 4444555566666
Q ss_pred EEccCCCCCCCcCccccCCCCCcEEEccCC-cccCC-cCcccCCCCCCcEEEccCC
Q 004005 383 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNN-HLEGP-IPVEFCQLDSLQILDISDN 436 (779)
Q Consensus 383 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n 436 (779)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 666665555444444445555555555555 33321 2223334444444444444
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=178.82 Aligned_cols=193 Identities=23% Similarity=0.302 Sum_probs=152.1
Q ss_pred cEEeccCccCCCccCccccCCCCCCEEEccCCccccccc-ccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005 477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 555 (779)
Q Consensus 477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 555 (779)
+.+++++|.++. +|..+. +.++.|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 81 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------- 81 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence 578888888884 555443 457899999999987644 4578899999999999999877766666544
Q ss_pred CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005 556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 635 (779)
+|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 799999999999988888899999999999999999
Q ss_pred ccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCc-c-cccCCCCCCCCCC
Q 004005 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNE-S-SYEGNTFLCGLPL 713 (779)
Q Consensus 636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~-~-~~~~n~~~c~~~l 713 (779)
++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|.|+. ..+..+.. . ...++
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l--~~l~~~~~~~~~~~~~-------- 187 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL--AWLGEWLRKKRIVTGN-------- 187 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG--HHHHHHHHHSCCBCCC--------
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch--HHHHHHHHhcCccccC--------
Confidence 999899999999999999999999999899999999999999999999998873 22222111 0 11222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc
Q 004005 714 PICRSPATMPEASIGNEQDDNL 735 (779)
Q Consensus 714 ~~c~~~~~~~~~~~~~~~~~~~ 735 (779)
+.|..|....+..+.+.....+
T Consensus 188 ~~C~~P~~l~g~~l~~l~~~~~ 209 (220)
T 2v70_A 188 PRCQKPYFLKEIPIQDVAIQDF 209 (220)
T ss_dssp CEEEESGGGTTEEGGGSCGGGC
T ss_pred CccCCChHHCCCChhhCCHHHc
Confidence 2477787777766655544433
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.2e-19 Score=185.95 Aligned_cols=148 Identities=24% Similarity=0.381 Sum_probs=82.5
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEE
Q 004005 352 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 431 (779)
Q Consensus 352 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 431 (779)
.+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456667777777666532 2 45666666666666666654333 55666666666666665532 235555555555
Q ss_pred EccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccc
Q 004005 432 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 511 (779)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 511 (779)
++++|++.+. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 113 ~l~~n~l~~~------------------------~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQITDV------------------------TP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCCCC------------------------GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc------------------------hh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 5555544421 11 4455666666666666654332 555566666666666665
Q ss_pred ccccccccCCCCCCEEEccCCcCC
Q 004005 512 GEVSVQLCELNQLQLLDLSNNNLH 535 (779)
Q Consensus 512 ~~~~~~l~~l~~L~~L~l~~n~l~ 535 (779)
+..+ +..+++|+.|++++|.++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCC
T ss_pred CChh--hcCCCCCCEEECCCCccC
Confidence 4322 555555555555555554
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.2e-19 Score=185.83 Aligned_cols=243 Identities=16% Similarity=0.149 Sum_probs=143.4
Q ss_pred CEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEcc
Q 004005 259 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS 338 (779)
Q Consensus 259 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 338 (779)
++++.++++++ .+|..+. +++++|++++|+++...+.+|.++++|++|+|++|.+.+.++...+.+++++.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~--- 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI--- 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE---
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh---
Confidence 35566666665 5554432 3555555555555543334455555555555555555434444444444444332
Q ss_pred CcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccC-CcccCC
Q 004005 339 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGP 417 (779)
Q Consensus 339 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~ 417 (779)
+.+.+|++....+.+|..+++|++|++++|.+....+..+....++..+++.+ +.+...
T Consensus 85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 33334444444444455555555555555555444333444444555555543 344433
Q ss_pred cCcccCCCC-CCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccC
Q 004005 418 IPVEFCQLD-SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 496 (779)
Q Consensus 418 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 496 (779)
.+..|..+. .++.|++++|+++.+.+..+...+++++++.++...+.++..+|.++++|++|++++|+++...+..+
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-- 222 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-- 222 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence 334454443 56777777777777667777777788888876555577888889999999999999999996555444
Q ss_pred CCCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 004005 497 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 532 (779)
Q Consensus 497 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 532 (779)
.+|+.|.+.++.-....| .+..+++|+.+++.++
T Consensus 223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 456666655544333455 4788999999998764
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.1e-18 Score=182.74 Aligned_cols=203 Identities=24% Similarity=0.242 Sum_probs=125.2
Q ss_pred CEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccC-CccccCCCCCCE-EEc
Q 004005 308 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI-PQSLSKCSSLEG-LYL 385 (779)
Q Consensus 308 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l 385 (779)
++++.+++.++ ++|..+ .+++++|++++|+++.+.+.+|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777777 677654 356778888888877766677777888888888888775543 346777777665 445
Q ss_pred cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC-cCccCCCCccCcccccEEEccCcccccc
Q 004005 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN-NISGSLPSCFHPLSIKQVHLSKNMLHGQ 464 (779)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 464 (779)
..|++....+..|..+++|++|++++|++....+..+....++..+++.++ ++. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence 557776666667777777777777777776555555555555666666442 333 2
Q ss_pred cCcccccCC-CCccEEeccCccCCCccCccccCCCCCCEEEccC-CcccccccccccCCCCCCEEEccCCcCCCCCC
Q 004005 465 LKRGTFFNC-SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 539 (779)
Q Consensus 465 ~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 539 (779)
++...|..+ ..++.|++++|+|+.+.+..|. ..+|+.+++.+ |.++...+..|..+++|+.|++++|+++...+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 333334443 2466666666666644444333 34566666653 45554444456666666666666666654433
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=9.8e-19 Score=168.48 Aligned_cols=162 Identities=26% Similarity=0.289 Sum_probs=134.3
Q ss_pred CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005 473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 552 (779)
Q Consensus 473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 552 (779)
.+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------ 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence 35788899999988877777788888999999999988877676778889999999999988876665555433
Q ss_pred CCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc
Q 004005 553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 632 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 632 (779)
+|++|++++|++++..+..|..+++|++|++++
T Consensus 101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 789999999999877777788999999999999
Q ss_pred cccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCcccc
Q 004005 633 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF 694 (779)
Q Consensus 633 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~ 694 (779)
|++++..+..|..+++|++|++++|++.+ .+++|++|+++.|.+++.+|.+++.+
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 99997777778999999999999998874 34678999999999999999865544
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.1e-19 Score=187.58 Aligned_cols=180 Identities=27% Similarity=0.293 Sum_probs=130.2
Q ss_pred cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcccc-CCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 004005 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD-GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530 (779)
Q Consensus 452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 530 (779)
+.++++++.+. .+|.. + .+.++.|+|++|.+++..+..+. ++++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56777777764 35544 2 24577888888888877777776 78888888888888887777778888888888888
Q ss_pred CCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCc
Q 004005 531 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 610 (779)
Q Consensus 531 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 610 (779)
+|++++..+..|..+. +|++|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence 8887765555554433 67888888888
Q ss_pred ccccCcccccCCCCCCEEECcccccccCCCCCC---CCCCCCCEEECCCCcCCCCCcccccCCCC--CcEEeccCCcCcc
Q 004005 611 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF---SNLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSG 685 (779)
Q Consensus 611 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~ 685 (779)
+++..|..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|+++...+..+..++. ++.|++++|++.|
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 877777778888888888888888876555555 55778888888888887666666777765 3778888888877
Q ss_pred cCC
Q 004005 686 EIP 688 (779)
Q Consensus 686 ~~p 688 (779)
.|.
T Consensus 204 ~C~ 206 (361)
T 2xot_A 204 DCK 206 (361)
T ss_dssp CHH
T ss_pred CcC
Confidence 664
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=7.3e-19 Score=170.41 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=141.9
Q ss_pred CEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccc
Q 004005 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 580 (779)
Q Consensus 501 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (779)
+.++++++.++. +|..+. ++++.|++++|.+++..+..|..++
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~---------------------------------- 56 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK---------------------------------- 56 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence 688999999984 454443 7999999999999877766665543
Q ss_pred eeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCC
Q 004005 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 660 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 660 (779)
+|++|+|++|++++..|..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|+++
T Consensus 57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7999999999999888999999999999999999999877788999999999999999999
Q ss_pred CCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005 661 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714 (779)
Q Consensus 661 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 714 (779)
+..|..|..+++|++|++++|++++..+..+..+.++..+.+.+|+|.|+|.+.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 999999999999999999999999888888888999999999999999998764
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=166.88 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=140.4
Q ss_pred CEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCC-cccccCcccccccCCCCCCcchhhhhhccccccccccccc
Q 004005 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 579 (779)
Q Consensus 501 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (779)
+.+++++|.++. +|..+ .+.++.|++++|.+++..+ ..|..+
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l---------------------------------- 56 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKL---------------------------------- 56 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGC----------------------------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccC----------------------------------
Confidence 589999999985 45544 3567899999999987644 334443
Q ss_pred ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 659 (779)
++|++|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 57 -------------------~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 57 -------------------PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp -------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred -------------------CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 4799999999999988888999999999999999999988888899999999999999999
Q ss_pred CCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCCC
Q 004005 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP 714 (779)
Q Consensus 660 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~ 714 (779)
++..|..|..+++|++|++++|++++..|..+..+.++..+.+.+|++.|+|++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 9999999999999999999999999998999999999999999999999998753
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=6.2e-18 Score=162.84 Aligned_cols=130 Identities=28% Similarity=0.277 Sum_probs=57.1
Q ss_pred CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 004005 306 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 385 (779)
Q Consensus 306 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (779)
+|++|++++|.+. .++...+..+++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555544 333333334444555555444444433333444444444444444444333333444444444444
Q ss_pred cCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCC
Q 004005 386 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 436 (779)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 436 (779)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 444444333333444444444444444444333333334444444444443
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.9e-18 Score=164.72 Aligned_cols=156 Identities=25% Similarity=0.243 Sum_probs=131.6
Q ss_pred ccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005 476 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 555 (779)
Q Consensus 476 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 555 (779)
.+.++.+++++. .+|..+. ++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------- 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------- 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence 456888888777 4454343 7888999999988887788888888999999999988766666555543
Q ss_pred CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005 556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 635 (779)
+|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 789999999999977777789999999999999999
Q ss_pred ccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCC
Q 004005 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 688 (779)
+ .+|..+..+++|++|+|++|++.+..+..|..+++|+.|++++|+++|.++
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9 678889999999999999999998777889999999999999999999886
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.7e-18 Score=181.92 Aligned_cols=180 Identities=23% Similarity=0.212 Sum_probs=104.4
Q ss_pred cEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc-CCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005 477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 555 (779)
Q Consensus 477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 555 (779)
+.+++++++++. +|..+. +.++.|+|++|++++..+..+. .+++|+.|++++|.+++..+..|..+.
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 88 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--------- 88 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC---------
Confidence 456666666653 343332 3466666666666655555555 666666666666666655544444332
Q ss_pred CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005 556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 635 (779)
+|++|+|++|++++..+..|.++++|++|+|++|+|
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 89 --------------------------------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp --------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 566666666666655555566666666666666666
Q ss_pred ccCCCCCCCCCCCCCEEECCCCcCCCCCcccc---cCCCCCcEEeccCCcCcccCCCCccccccC--CcccccCCCCCCC
Q 004005 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL---VELKTLEVFSVAYNNLSGEIPEWKAQFATF--NESSYEGNTFLCG 710 (779)
Q Consensus 636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~--~~~~~~~n~~~c~ 710 (779)
++..|..|.++++|++|+|++|+++...+..| ..+++|+.||+++|+++...+..+..+..+ ..+.+.+|||.|+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 66666666666666666666666664444444 346666666666666664433333333332 4455666666666
Q ss_pred CC
Q 004005 711 LP 712 (779)
Q Consensus 711 ~~ 712 (779)
|.
T Consensus 205 C~ 206 (361)
T 2xot_A 205 CK 206 (361)
T ss_dssp HH
T ss_pred cC
Confidence 53
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=9.9e-18 Score=184.15 Aligned_cols=149 Identities=26% Similarity=0.339 Sum_probs=101.2
Q ss_pred CCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccccc
Q 004005 473 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 552 (779)
Q Consensus 473 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 552 (779)
+++|+.|++++|.+++ +|. +.+ +|+.|++++|++++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-------- 158 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-------- 158 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C--------
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c--------
Confidence 4677777777777775 454 443 77777777777775 333 56777777777777764 222 1
Q ss_pred CCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcc
Q 004005 553 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 632 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 632 (779)
+++|++|++++|++++ +|. |. ++|+.|+|++
T Consensus 159 ---------------------------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 159 ---------------------------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred ---------------------------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 2357778888888775 555 55 7788888888
Q ss_pred cccccCCCCCCCCCCCC-------CEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccc
Q 004005 633 NNLTGSIPSTFSNLKHV-------ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 695 (779)
Q Consensus 633 n~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 695 (779)
|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8887 4454 544 66 88888888887 4666666788888888888888877776555543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.6e-17 Score=162.11 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=139.7
Q ss_pred CCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccc
Q 004005 499 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN 578 (779)
Q Consensus 499 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (779)
+-+.++.+++.++ .+|..+ .++|+.|++++|.+++..|..|..++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------------- 64 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLI-------------------------------- 64 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence 3578999999998 445444 38999999999999988888776654
Q ss_pred cceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCc
Q 004005 579 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 658 (779)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 658 (779)
+|++|+|++|++....+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus 65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 79999999999987666778999999999999999998888889999999999999999
Q ss_pred CCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005 659 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 659 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
++ .+|..+..+++|++|++++|+++...+..+..+.++..+.+.+||+.|+|+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 98 778889999999999999999998777778889999999999999999986
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.1e-17 Score=166.45 Aligned_cols=152 Identities=26% Similarity=0.379 Sum_probs=124.4
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|.+++. ..+..
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~----- 132 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVH----- 132 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGG-----
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcC-----
Confidence 6678889999999999886544 88889999999999998853 3488889999999999988753 12222
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 629 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 629 (779)
+++|+.|++++|++++. ..+..+++|++|+
T Consensus 133 ------------------------------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 133 ------------------------------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ------------------------------------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 34799999999999864 6788899999999
Q ss_pred CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCccc
Q 004005 630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 686 (779)
Q Consensus 630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 686 (779)
+++|++++..+ +..+++|++|++++|++++. + .+..+++|+.|++++|+++..
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 99999996654 88999999999999999854 4 488999999999999998853
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=3.4e-17 Score=179.91 Aligned_cols=187 Identities=27% Similarity=0.344 Sum_probs=119.9
Q ss_pred CCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccC
Q 004005 379 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 458 (779)
Q Consensus 379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 458 (779)
+|+.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|+++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i----------------- 115 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL----------------- 115 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-----------------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-----------------
Confidence 78888888888775 44433 267788888887777 344 3466777777777776642
Q ss_pred cccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCC
Q 004005 459 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 538 (779)
Q Consensus 459 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 538 (779)
|. +.. +|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +
T Consensus 116 -------p~--l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 116 -------PE--LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp -------CC--CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred -------ch--hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 22 222 56666666666664 343 45667777777777664 333 45677777777777665 3
Q ss_pred CcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCccc
Q 004005 539 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 618 (779)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 618 (779)
|. +. ++|+.|+|++|+++ .+|.
T Consensus 176 p~-l~-------------------------------------------------------~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 176 PE-LP-------------------------------------------------------ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp CC-CC-------------------------------------------------------TTCCEEECCSSCCS-SCCC-
T ss_pred ch-hh-------------------------------------------------------CCCCEEECcCCCCC-chhh-
Confidence 32 22 15777777777776 4555
Q ss_pred ccCCCCC-------CEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCC
Q 004005 619 IGNLTRI-------QTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 670 (779)
Q Consensus 619 l~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 670 (779)
+.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 443 56 78888888887 456666668888888888888877777766554
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=4.7e-17 Score=153.96 Aligned_cols=127 Identities=24% Similarity=0.390 Sum_probs=98.1
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
+|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 68888888888887778889999999999999999998888889999999999999999998889999999999999999
Q ss_pred CCcCcccCCCCcccccc-CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 004005 680 YNNLSGEIPEWKAQFAT-FNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNL 735 (779)
Q Consensus 680 ~N~l~~~~p~~~~~~~~-~~~~~~~~n~~~c~~~l~~c~~~~~~~~~~~~~~~~~~~ 735 (779)
+|+++|.++. .++.. +....+.++.. .|..|....+..+.+....++
T Consensus 135 ~N~l~c~c~l--~~~~~~l~~~~~~~~~~-------~C~~P~~l~~~~l~~l~~~~~ 182 (192)
T 1w8a_A 135 SNPFNCNCHL--AWFAEWLRKKSLNGGAA-------RCGAPSKVRDVQIKDLPHSEF 182 (192)
T ss_dssp TCCBCCSGGG--HHHHHHHHHHCCSGGGC-------BBCSSTTTTTSBGGGSCTTTC
T ss_pred CCCccCcCcc--hHHHHHHHHcCCCCCCC-------CCCCChHHcCCChhhCcHhhc
Confidence 9999988874 22222 11222333322 377777777766666555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.2e-16 Score=177.65 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=43.8
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
+|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++.+. ..+..+++|+.|+++
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence 455555555555532 345555555555665555554433 55555566666666655532 235555566666666
Q ss_pred CCcCcc
Q 004005 680 YNNLSG 685 (779)
Q Consensus 680 ~N~l~~ 685 (779)
+|++++
T Consensus 206 ~N~l~~ 211 (605)
T 1m9s_A 206 SQECLN 211 (605)
T ss_dssp SEEEEC
T ss_pred CCcCcC
Confidence 665554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.7e-17 Score=161.71 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=135.9
Q ss_pred cccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 004005 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 529 (779)
Q Consensus 450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 529 (779)
++..++++++.+... + .+..+++|+.|++++|+++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~-~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 344455555555332 2 26778899999999999885 44 58889999999999999986555 889999999999
Q ss_pred cCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCC
Q 004005 530 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 609 (779)
Q Consensus 530 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 609 (779)
++|++++..+... ++|+.|++++|
T Consensus 93 ~~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N 116 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNN 116 (263)
T ss_dssp CSSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSS
T ss_pred CCCccCCcCcccc--------------------------------------------------------CcccEEEccCC
Confidence 9999875322111 26999999999
Q ss_pred cccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccC
Q 004005 610 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 687 (779)
Q Consensus 610 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 687 (779)
++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++.+. ..+..+++|+.|++++|++++..
T Consensus 117 ~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 117 ELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99863 3589999999999999999965 3 688999999999999999876 67889999999999999998663
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=151.49 Aligned_cols=135 Identities=21% Similarity=0.339 Sum_probs=95.8
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
.+++|++++|+++ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5677777777776 456667777777777777777776666677777777777777777776666677777777777777
Q ss_pred CCcCcccCCCCccccccCCcccccCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCCc
Q 004005 680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL----------------PICRSPATMPEASIGNEQDDNL 735 (779)
Q Consensus 680 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l----------------~~c~~~~~~~~~~~~~~~~~~~ 735 (779)
+|+++...+..+..+.++..+.+.+|||.|+|.+ ..|..|....++.+.+...+.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~ 182 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF 182 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHe
Confidence 7777765555566667777777777777777643 1388888888877766655544
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=9e-17 Score=152.97 Aligned_cols=154 Identities=16% Similarity=0.260 Sum_probs=121.2
Q ss_pred cCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCccccc
Q 004005 471 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 550 (779)
Q Consensus 471 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 550 (779)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l----- 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL----- 111 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCC-----
Confidence 45678888888888888 444 57788889999998887753 3467888899999999988876555555443
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEEC
Q 004005 551 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 630 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 630 (779)
++|++|++++|++++..+..+..+++|++|++
T Consensus 112 ------------------------------------------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 112 ------------------------------------------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp ------------------------------------------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred ------------------------------------------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 37899999999998777888999999999999
Q ss_pred cccc-cccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcc
Q 004005 631 SHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 685 (779)
Q Consensus 631 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 685 (779)
++|+ ++ ..| .+..+++|++|++++|++++. + .+..+++|++|++++|++..
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9998 66 444 688899999999999999853 3 67889999999999998763
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.9e-15 Score=159.73 Aligned_cols=249 Identities=17% Similarity=0.191 Sum_probs=167.6
Q ss_pred CccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCccc
Q 004005 371 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 450 (779)
Q Consensus 371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 450 (779)
..+|.++ +|+.+.+.++ +..+...+|.++ +|+++.+.+ .+..+.+.+|.++++|+.+++.+|+++.+....|...+
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG 204 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecc
Confidence 3344443 3444444433 333333344442 355555543 33334444555556666666655555555555555556
Q ss_pred ccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 004005 451 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 530 (779)
Q Consensus 451 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 530 (779)
|+.+.+..+ + ..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.....+|.+|++|+.+++.
T Consensus 205 L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 205 IEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 666666543 2 4566777889999999999864 56566777877 789999994 55666677889999999999998
Q ss_pred CCcCC-----CCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEE
Q 004005 531 NNNLH-----GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 605 (779)
Q Consensus 531 ~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 605 (779)
+|.+. ...+.+|..+ ++|+.++
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c-----------------------------------------------------~~L~~l~ 306 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGC-----------------------------------------------------PKLARFE 306 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTC-----------------------------------------------------TTCCEEC
T ss_pred CccccCCcccEECHHHhhCC-----------------------------------------------------ccCCeEE
Confidence 87664 2333444443 3688888
Q ss_pred ccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC-CCcEEeccCCcCc
Q 004005 606 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLS 684 (779)
Q Consensus 606 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~ 684 (779)
+. ++++.+...+|.++++|+.++|.+| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+.
T Consensus 307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 88 4577667778999999999999665 776778899999 999999999988877777888774 7888888877654
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.2e-16 Score=175.59 Aligned_cols=163 Identities=23% Similarity=0.339 Sum_probs=88.7
Q ss_pred EEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcc
Q 004005 335 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 414 (779)
Q Consensus 335 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 414 (779)
+.+..+.+.... .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 344444444322 233556666667766666533 2 35666666666666666654433 55566666666666655
Q ss_pred cCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccc
Q 004005 415 EGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 494 (779)
Q Consensus 415 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 494 (779)
.+. ..+..+++|+.|++++|.+.+. + .+..+++|+.|+|++|.+++. ..+
T Consensus 100 ~~l--~~l~~l~~L~~L~Ls~N~l~~l------------------------~--~l~~l~~L~~L~Ls~N~l~~l--~~l 149 (605)
T 1m9s_A 100 KDL--SSLKDLKKLKSLSLEHNGISDI------------------------N--GLVHLPQLESLYLGNNKITDI--TVL 149 (605)
T ss_dssp CCC--TTSTTCTTCCEEECTTSCCCCC------------------------G--GGGGCTTCSEEECCSSCCCCC--GGG
T ss_pred CCC--hhhccCCCCCEEEecCCCCCCC------------------------c--cccCCCccCEEECCCCccCCc--hhh
Confidence 532 1344555555555555544321 1 144556666666666666543 345
Q ss_pred cCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCC
Q 004005 495 DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 535 (779)
Q Consensus 495 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 535 (779)
..+++|+.|+|++|.+++..+ +..+++|+.|+|++|+++
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 556666666666666654433 555556666666555554
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=5.8e-17 Score=168.04 Aligned_cols=288 Identities=14% Similarity=0.094 Sum_probs=148.5
Q ss_pred CCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccC--ccCcccCCCCCCCCEEEccCCcCCccCCccccC-----
Q 004005 304 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ--GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK----- 376 (779)
Q Consensus 304 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 376 (779)
+++++.|.++++--. .-...+...+++|+.|+|++|++. ...... ++.++.+.+..+. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhccccccc
Confidence 345566666543211 111122222566666666666665 211111 1223344444442 23345555
Q ss_pred ---CCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccE
Q 004005 377 ---CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ 453 (779)
Q Consensus 377 ---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 453 (779)
+++|+.+++.+ .+..+.+.+|.++++|+++++.+|.+..+.+.+|.++.++..+....+.....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~------------ 163 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF------------ 163 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT------------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc------------
Confidence 66777777766 55555556666677777777776666655566666665555555443211000
Q ss_pred EEccCcccccccCcccccCCCCcc-EEeccCccCCCccCcc-c---cCCCCCCEEEccCCcccccccccccCCCCCCEEE
Q 004005 454 VHLSKNMLHGQLKRGTFFNCSSLV-TLDLSYNRLNGSIPDW-V---DGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLD 528 (779)
Q Consensus 454 L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~-~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 528 (779)
...+...+|.++..|+ .+.+..... ++.. + ....+++.+.+.++-...........+++|+.++
T Consensus 164 --------~~~i~~~~f~~~~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 164 --------KNRWEHFAFIEGEPLETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp --------STTTTTSCEEESCCCEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE
T ss_pred --------cccccccccccccccceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE
Confidence 0112222344455554 333332111 1111 1 1133444555544321111111112256666666
Q ss_pred ccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccC
Q 004005 529 LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 608 (779)
Q Consensus 529 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 608 (779)
+++|+++...+.+|..+. +|+++++.+
T Consensus 233 L~~n~i~~I~~~aF~~~~-----------------------------------------------------~L~~l~l~~ 259 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKK-----------------------------------------------------YLLKIKLPH 259 (329)
T ss_dssp CTTBCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCT
T ss_pred CCCCCcceecHhhhhCCC-----------------------------------------------------CCCEEECCc
Confidence 666666655555555543 566666666
Q ss_pred CcccccCcccccCCCCCC-EEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEe
Q 004005 609 NKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 677 (779)
Q Consensus 609 n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 677 (779)
| +..+.+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.+++++|++..+.+.+|.++++|+.++
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5 5555556677777777 777776 66656667777777777777777777766666777777777665
No 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=6.2e-16 Score=156.86 Aligned_cols=147 Identities=25% Similarity=0.373 Sum_probs=83.1
Q ss_pred CCCCcEEECCCCCCCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEE
Q 004005 280 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359 (779)
Q Consensus 280 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 359 (779)
+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 3445555555554443222 555555566666655554 3332 23455666666666655542 334556666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCc
Q 004005 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (779)
++++|++.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 6666666544 345666666666666666664433 56666666666666666643 2 3566666666666666655
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.6e-16 Score=148.87 Aligned_cols=174 Identities=24% Similarity=0.308 Sum_probs=132.5
Q ss_pred cEEeccCccCCCccCccccCCCCCCEEEccCCcccccccc-cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCC
Q 004005 477 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 555 (779)
Q Consensus 477 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 555 (779)
+.+++++++++ .+|..+. .+++.|++++|++++..+. .+..+++|++|++++|.+++..|..|..+.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 67888888887 4555443 3889999999999866654 488899999999999999888787776644
Q ss_pred CCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECccccc
Q 004005 556 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 635 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 635 (779)
+|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 799999999999988888899999999999999999
Q ss_pred ccCCCCCCCCCCCCCEEECCCCcCCCCCccc-ccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCC
Q 004005 636 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 711 (779)
Q Consensus 636 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~ 711 (779)
++..|..|..+++|++|+|++|++.+..+.. +. ..++...+.++...|..|..+. ...-..+..+.+.|..
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~l~---~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKCSS 186 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCCCC
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChHHc---CCChhhCcHhhcCcCC
Confidence 9999999999999999999999998765521 11 1122224556677777776432 2233345556666654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.1e-16 Score=165.96 Aligned_cols=285 Identities=13% Similarity=0.081 Sum_probs=190.9
Q ss_pred CCCCCEEEccCcccCccCcccCCC-CCCCCEEEccCCcCC--ccCCccccCCCCCCEEEccCCCCCCCcCccccC-----
Q 004005 329 CVNLQFLALSNNNLQGHLFSRNFN-LTNLQWLQLEGNRFV--GEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN----- 400 (779)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----- 400 (779)
+.++++|.++++ +.......+.. +++|+.|||++|++. ...+..+ +.++.+.+..+. +.+..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhccccccc
Confidence 456888888764 22111222333 788999999999887 2222222 224455555553 33455666
Q ss_pred ---CCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCcc
Q 004005 401 ---LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 477 (779)
Q Consensus 401 ---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 477 (779)
+++|+++++.+ .++.+.+.+|.++++|+.+++.+|.+.. ++..+|.++.++.
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~------------------------i~~~aF~~~~~l~ 151 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN------------------------LLPEALADSVTAI 151 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE------------------------ECTTSSCTTTCEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc------------------------cchhhhcCCCceE
Confidence 78888888877 6766666777888888888887776653 3344466677777
Q ss_pred EEeccCc----cCCCccCccccCCCCCC-EEEccCCccc-ccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005 478 TLDLSYN----RLNGSIPDWVDGLSQLS-HLILGHNNLE-GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 551 (779)
Q Consensus 478 ~L~L~~n----~i~~~~~~~~~~l~~L~-~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 551 (779)
.+....+ ........+|.++..|+ .+.+....-. ......-....+++.+.+.++-.. ..+...
T Consensus 152 ~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----~~~~~l------ 221 (329)
T 3sb4_A 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN----ADFKLI------ 221 (329)
T ss_dssp EECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH----HHHHHH------
T ss_pred EecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH----HHHHHH------
Confidence 7766553 22333455677777777 5555443211 111111123456677777665211 000000
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECc
Q 004005 552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 631 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 631 (779)
...+++|++++|++|+++.+.+.+|.++++|++|+|+
T Consensus 222 -------------------------------------------~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 222 -------------------------------------------RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp -------------------------------------------HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred -------------------------------------------HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0113479999999999998778889999999999999
Q ss_pred ccccccCCCCCCCCCCCCC-EEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcc
Q 004005 632 HNNLTGSIPSTFSNLKHVE-SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNES 700 (779)
Q Consensus 632 ~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 700 (779)
+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+..|..+.++..+
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 98 8878889999999999 999999 8887888999999999999999999997777777777666554
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=4e-15 Score=158.31 Aligned_cols=220 Identities=17% Similarity=0.195 Sum_probs=108.9
Q ss_pred CccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCC
Q 004005 298 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 377 (779)
Q Consensus 298 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 377 (779)
..+|.++++|+.+++..+ ++ .++...+.++.+|+.+.+..+ +..+...+|.++..++...... .......+|.++
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c 161 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATC 161 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC
T ss_pred hhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhccc
Confidence 444555555555555433 32 444445555555555444332 3333344444443222222111 122333456666
Q ss_pred CCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEcc
Q 004005 378 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 457 (779)
Q Consensus 378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 457 (779)
++|+.+.+.++. .......|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... .....+...+|+.+.+.
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIP 238 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEEC
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEEC
Confidence 666666665442 2244455666666666666554 33344455666666666665544322 22233334455555554
Q ss_pred CcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005 458 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531 (779)
Q Consensus 458 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 531 (779)
... ..+...+|.++..++.+.+..+... ....+|..+..++.+....+.+. ...|..+.+|+.+.+.+
T Consensus 239 ~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 239 DSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp TTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred CCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 322 2344445666666666666554332 44455666666666655544322 23455555565555543
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=4.8e-16 Score=147.91 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=94.3
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l---- 135 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL---- 135 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTC----
T ss_pred HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhC----
Confidence 5666777777777776653 2356777778888888887776666777777888888888887765444444332
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCc-ccccCcccccCCCCCCEE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK-LIGHIPPQIGNLTRIQTL 628 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L 628 (779)
++|++|++++|+ ++ .+| .+..+++|++|
T Consensus 136 -------------------------------------------------~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 136 -------------------------------------------------PKVNSIDLSYNGAIT-DIM-PLKTLPELKSL 164 (197)
T ss_dssp -------------------------------------------------SSCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred -------------------------------------------------CCCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence 368888888887 54 444 67888888889
Q ss_pred ECcccccccCCCCCCCCCCCCCEEECCCCcCCC
Q 004005 629 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 661 (779)
Q Consensus 629 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 661 (779)
++++|++++. + .+..+++|++|++++|++.+
T Consensus 165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9988888853 3 67888889999999888753
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.2e-14 Score=153.51 Aligned_cols=270 Identities=13% Similarity=0.164 Sum_probs=135.7
Q ss_pred CCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEE
Q 004005 305 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLY 384 (779)
Q Consensus 305 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 384 (779)
..++.+.+.++ ++ .++...|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+.+.. .+..+.+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44444444432 22 3444444443 4555555444 44444455554 2466666654 34444455666666666666
Q ss_pred ccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccc
Q 004005 385 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 464 (779)
Q Consensus 385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 464 (779)
+.+|.+..+....|. .++|+.+.+.++ +..+...+|.++++|+.+++..+ ++.+...+|...+|+.+.+..+ + ..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i-~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-V-TN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-C-CE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-c-cE
Confidence 666665544444444 356666666533 44445556666666666666543 3333333333333444443221 1 23
Q ss_pred cCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005 465 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544 (779)
Q Consensus 465 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 544 (779)
++..+|.+|++|+.+++.++.+.. +.+......+|.+|++|+.+++.+ .++.....+|..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~ 321 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG 321 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred EChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence 333445555555555554443320 000022333444455555555442 233333333333
Q ss_pred CcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCC
Q 004005 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 624 (779)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 624 (779)
++ +|+.+++..+ ++.+.+.+|.++ +
T Consensus 322 c~-----------------------------------------------------~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 322 NR-----------------------------------------------------KVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp CC-----------------------------------------------------SCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CC-----------------------------------------------------CccEEEECcc-ccEEcHHhCCCC-C
Confidence 22 4555555333 444455667777 7
Q ss_pred CCEEECcccccccCCCCCCCCCC-CCCEEECCCCcCC
Q 004005 625 IQTLNLSHNNLTGSIPSTFSNLK-HVESLDLSNNKLN 660 (779)
Q Consensus 625 L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 660 (779)
|+.+++++|.+....+..|.+++ .++.|++..+.+.
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 77777777777666666777764 6777777666543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=140.98 Aligned_cols=89 Identities=28% Similarity=0.319 Sum_probs=77.0
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
+|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 67778888888877777778888999999999999998888889999999999999999987777778889999999999
Q ss_pred CCcCcccCC
Q 004005 680 YNNLSGEIP 688 (779)
Q Consensus 680 ~N~l~~~~p 688 (779)
+|++.|.|+
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 999998776
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.4e-15 Score=151.61 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=109.1
Q ss_pred CCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEc
Q 004005 330 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIM 409 (779)
Q Consensus 330 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 409 (779)
.++..++++++.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555666666666433 455667777777777777633 3 56667777777777777765433 666777777777
Q ss_pred cCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCc
Q 004005 410 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 489 (779)
Q Consensus 410 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 489 (779)
++|++++..+ +.. ++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~------------------------~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT------------------------D--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS------------------------G--GGTTCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC------------------------h--hhcCcccccEEECCCCcCCCC
Confidence 7776664322 222 5666666666655532 1 266677777777777777754
Q ss_pred cCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCC
Q 004005 490 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP 537 (779)
Q Consensus 490 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 537 (779)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++.+.
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 466777777777777777754 5567777777777777777654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=135.80 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=75.2
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 67778888887776666667888899999999999987777778889999999999999987666667889999999999
Q ss_pred CCcCcccCC
Q 004005 680 YNNLSGEIP 688 (779)
Q Consensus 680 ~N~l~~~~p 688 (779)
+|+++|.+|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999998877
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=7.1e-18 Score=186.56 Aligned_cols=122 Identities=27% Similarity=0.306 Sum_probs=83.9
Q ss_pred CCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccc
Q 004005 499 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN 578 (779)
Q Consensus 499 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (779)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-------------------------------- 486 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR-------------------------------- 486 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT--------------------------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC--------------------------------
Confidence 36667777776664 343 666677777777777766 4455554433
Q ss_pred cceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCC-CCCCCCCCCCCEEECCCC
Q 004005 579 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKHVESLDLSNN 657 (779)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N 657 (779)
+|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..|..+++|+.|+|++|
T Consensus 487 ---------------------~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 487 ---------------------CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp ---------------------TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ---------------------CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 67777777777775 55 6777888888888888888665 777888888888888888
Q ss_pred cCCCCCcc---cccCCCCCcEEec
Q 004005 658 KLNGKIPH---QLVELKTLEVFSV 678 (779)
Q Consensus 658 ~l~~~~~~---~~~~l~~L~~L~l 678 (779)
++++..|. .+..+++|+.||+
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 88765442 2334778888764
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.8e-15 Score=137.10 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=52.0
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCC-CCCCCCCCCCEEECCCCcCCCCCc---ccccCCCCCcE
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV 675 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~ 675 (779)
+|++|++++|++++.+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 45555555555554455555556666666666666664321 456666667777777776664444 35666777777
Q ss_pred EeccCCcCc
Q 004005 676 FSVAYNNLS 684 (779)
Q Consensus 676 L~l~~N~l~ 684 (779)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 777777665
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=7.3e-14 Score=148.55 Aligned_cols=317 Identities=11% Similarity=0.081 Sum_probs=205.6
Q ss_pred CCcccCccccCCCCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEEEccCCcCCccCCc
Q 004005 293 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQ 372 (779)
Q Consensus 293 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 372 (779)
++.....+|.++.+|+.+.+..+ ++ .+....|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34455667888888999888754 55 777788888899999988754 66666778888888888777654 4445556
Q ss_pred cccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccC-cccc
Q 004005 373 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSI 451 (779)
Q Consensus 373 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L 451 (779)
+|.++..++...... .......+|.++++|+.+.+.++. ..+....|.++.+|+.+++..+ +..+....|. +..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 777765433332222 222445678888888888887653 3355567788888888877665 3333333333 4455
Q ss_pred cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccC
Q 004005 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSN 531 (779)
Q Consensus 452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 531 (779)
+.+.+..+.. .+... +..+.+|+.+.+... ++.....+|.++..|+.+.+..+... .....|..+..++.+....
T Consensus 211 ~~i~~~~~~~--~i~~~-~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLY--YLGDF-ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCC--EECTT-TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCce--Eeehh-hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 5555444322 12222 233455666655432 22234445566666666666555433 4444556666666655544
Q ss_pred CcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcc
Q 004005 532 NNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 611 (779)
Q Consensus 532 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 611 (779)
+.+. ..+|.. ..+|+.+.+..+ +
T Consensus 286 ~~i~---~~~F~~-----------------------------------------------------~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 286 VIVP---EKTFYG-----------------------------------------------------CSSLTEVKLLDS-V 308 (394)
T ss_dssp SEEC---TTTTTT-----------------------------------------------------CTTCCEEEECTT-C
T ss_pred eeec---cccccc-----------------------------------------------------cccccccccccc-c
Confidence 3221 112221 336888888764 6
Q ss_pred cccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005 612 IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681 (779)
Q Consensus 612 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 681 (779)
..+...+|.++.+|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6566778999999999999854 77677889999999999999877 77677789999999999998755
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=7.2e-17 Score=178.52 Aligned_cols=180 Identities=23% Similarity=0.276 Sum_probs=127.6
Q ss_pred cccEEEccCcccccccCcccccCCCCccEEeccCcc-------------CCCccCccccCCCCCCEEE-ccCCccccccc
Q 004005 450 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR-------------LNGSIPDWVDGLSQLSHLI-LGHNNLEGEVS 515 (779)
Q Consensus 450 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~ 515 (779)
+|+.|++++|.+. .+|.. ++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.....
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 3444444444432 33333 4555555555554443 3445556666666666666 44443321100
Q ss_pred c-----ccc--CCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeecc
Q 004005 516 V-----QLC--ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKN 588 (779)
Q Consensus 516 ~-----~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (779)
. .+. ....|+.|++++|.+++ +|. +..+
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l------------------------------------------- 462 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQL------------------------------------------- 462 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGG-------------------------------------------
T ss_pred hhhhcccccccCccCceEEEecCCCCCC-CcC-cccc-------------------------------------------
Confidence 0 000 01358999999999986 343 5443
Q ss_pred ceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCC-cccc
Q 004005 589 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQL 667 (779)
Q Consensus 589 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~ 667 (779)
++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..+
T Consensus 463 ----------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 463 ----------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp ----------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred ----------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 37999999999999 789999999999999999999996 56 8999999999999999999887 9999
Q ss_pred cCCCCCcEEeccCCcCcccCCC
Q 004005 668 VELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 668 ~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
..+++|+.|++++|++++.+|.
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSC
T ss_pred hcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999999987664
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=6.6e-15 Score=136.14 Aligned_cols=134 Identities=25% Similarity=0.245 Sum_probs=104.0
Q ss_pred CCCccEEeccCccCC-CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005 473 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 551 (779)
Q Consensus 473 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 551 (779)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------ 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC------
Confidence 467888888888887 56677777888888888888888755 667788888888888888876555544332
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccC-cccccCCCCCCEEEC
Q 004005 552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI-PPQIGNLTRIQTLNL 630 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L 630 (779)
++|++|++++|++++.. +..+..+++|++|++
T Consensus 95 -----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 95 -----------------------------------------------PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp -----------------------------------------------TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred -----------------------------------------------CCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 36888888888887532 267888889999999
Q ss_pred cccccccCCC---CCCCCCCCCCEEECCCCcCCC
Q 004005 631 SHNNLTGSIP---STFSNLKHVESLDLSNNKLNG 661 (779)
Q Consensus 631 s~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~ 661 (779)
++|++++..+ ..+..+++|++|++++|.+..
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999986555 478888999999999998873
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.1e-15 Score=132.85 Aligned_cols=80 Identities=24% Similarity=0.260 Sum_probs=50.3
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccC-CCCCCCCCCCCCEEECCCCcCCCCCc---ccccCCCCCcE
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV 675 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~ 675 (779)
+|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 455666666666554555555666666666666666643 23556666777777777777765544 45666777777
Q ss_pred Eecc
Q 004005 676 FSVA 679 (779)
Q Consensus 676 L~l~ 679 (779)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 7665
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=4.6e-14 Score=131.64 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=104.3
Q ss_pred cCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678 (779)
Q Consensus 599 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 678 (779)
++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 46999999999999777777899999999999999999888888999999999999999999888888899999999999
Q ss_pred cCCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005 679 AYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 679 ~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
++|++++..+..+..+.++..+.+.+|++.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999997777667788999999999999999886
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=1e-14 Score=131.78 Aligned_cols=129 Identities=26% Similarity=0.304 Sum_probs=97.7
Q ss_pred CCCccEEeccCccCC-CccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccc
Q 004005 473 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 551 (779)
Q Consensus 473 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 551 (779)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------ 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC------ 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC------
Confidence 367788888888887 56677777788888888888888755 567778888888888888876555444332
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCccccc-CcccccCCCCCCEEEC
Q 004005 552 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNL 630 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L 630 (779)
++|++|++++|++++. .+..+..+++|++|++
T Consensus 88 -----------------------------------------------~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 88 -----------------------------------------------PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp -----------------------------------------------TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred -----------------------------------------------CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 3688888888888753 3367888888999999
Q ss_pred cccccccCCC---CCCCCCCCCCEEECCC
Q 004005 631 SHNNLTGSIP---STFSNLKHVESLDLSN 656 (779)
Q Consensus 631 s~n~l~~~~~---~~~~~l~~L~~L~L~~ 656 (779)
++|++++..+ ..+..+++|++|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9998886655 4688888888888864
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=2.1e-15 Score=172.34 Aligned_cols=166 Identities=22% Similarity=0.144 Sum_probs=84.1
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEc
Q 004005 354 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 433 (779)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 433 (779)
+.++.|++.+|.+... +.. .++.++|+.+.+.+ +++..|.+. ..+..+..++.|+.|++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 5577777777776642 222 23444444443331 122233333 33445555666666666
Q ss_pred cCCcCccCCCCccCcccccEEEccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccc
Q 004005 434 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 513 (779)
Q Consensus 434 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 513 (779)
++|.+....+..+.+++|+.|+|++|.+. .+|.. |.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 66666544444455556666666666664 55544 778888888888888888 56888888888888888888887 5
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005 514 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544 (779)
Q Consensus 514 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 544 (779)
+|..|..+++|+.|+|++|++++.+|..+..
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 5666888888888888888888766665543
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=4e-15 Score=170.05 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=78.0
Q ss_pred CCCcEEEccCCcCccCCCCccCcccccEEE-----ccCcccccccCcccccCCCCccEEeccCccCCCccCccccCCCCC
Q 004005 426 DSLQILDISDNNISGSLPSCFHPLSIKQVH-----LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQL 500 (779)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~-----l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 500 (779)
+.++.|++.+|.+.......+....|..+. +..|.+. ++...|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 456777787777765433333322222222 2222221 23333556666666666666665 344444456666
Q ss_pred CEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccc
Q 004005 501 SHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 580 (779)
Q Consensus 501 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (779)
+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~---------------------------------- 293 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF---------------------------------- 293 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT----------------------------------
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC----------------------------------
Confidence 66666666666 45555666666666666666665 3344443322
Q ss_pred eeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC-CCCEEECCCCcC
Q 004005 581 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-HVESLDLSNNKL 659 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l 659 (779)
+|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+. .+..|+|++|.+
T Consensus 294 -------------------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 294 -------------------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp -------------------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -------------------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 5666666666665 4555566666666666666666655555443332 112355666666
Q ss_pred CCCCcccccCCCCCcEEeccCC
Q 004005 660 NGKIPHQLVELKTLEVFSVAYN 681 (779)
Q Consensus 660 ~~~~~~~~~~l~~L~~L~l~~N 681 (779)
++.+|. .|+.|+++.|
T Consensus 354 ~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCCCC------C---------
T ss_pred cCcCcc------ccceeEeecc
Confidence 655553 3455556655
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1e-13 Score=127.96 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=84.2
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
.|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 68999999999998889999999999999999999998888889999999999999999998777789999999999999
Q ss_pred CCcCcccCCC
Q 004005 680 YNNLSGEIPE 689 (779)
Q Consensus 680 ~N~l~~~~p~ 689 (779)
+|+++|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999998864
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=2.3e-12 Score=137.00 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=77.9
Q ss_pred CcEEECCCCCCCcccCccccCCCCCCEEEccCCc---CccccchhhhhCCCCCCEEEccCcccCccCcccCCCCCCCCEE
Q 004005 283 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH---LTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 359 (779)
Q Consensus 283 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 359 (779)
|+.+.+..+ ++.....+|.++++|+.+.+..+. ++ .+....|.++.+|+.+.+..+ ++.+....|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 444444322 333444556666666666665542 33 455555556666666555433 344445556666666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCc
Q 004005 360 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNN 437 (779)
Q Consensus 360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (779)
.+..+ +..+...+|..+..|+.+.+.++ +..+...+|.+ ..|+.+.+..+-.. ....+|.++.+++........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSS
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccc
Confidence 66543 33344456666666666666544 33233344433 45666666554322 334556666666666555443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.1e-13 Score=125.77 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=100.8
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
..+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3678999999998 4776664 799999999999998889999999999999999999998888888999999999999
Q ss_pred CCcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005 680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 680 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
+|++++..+..+..+.++..+.+.+|++.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998877778899999999999999999985
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.5e-13 Score=128.01 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=54.2
Q ss_pred CcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCC--CCCCCCCCCEEECCCCcCCCCCcc----cccCCCCC
Q 004005 600 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTL 673 (779)
Q Consensus 600 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L 673 (779)
+|++|++++|++++..+..+..+++|++|++++|+++. .|. .+..+++|+.|++++|++.. .|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence 45666666666654433444666777777777777753 343 56677777777777777763 344 36777788
Q ss_pred cEEeccCCcCcc
Q 004005 674 EVFSVAYNNLSG 685 (779)
Q Consensus 674 ~~L~l~~N~l~~ 685 (779)
++||+++|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 888887776653
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.7e-13 Score=127.59 Aligned_cols=133 Identities=20% Similarity=0.195 Sum_probs=102.9
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+++|+.|++++|+++. ++......++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---- 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL---- 87 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC----
Confidence 5677888899999988884 354333344899999999988864 568888899999999998875544433332
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcc--cccCCCCCCE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QIGNLTRIQT 627 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~ 627 (779)
++|++|++++|++. .+|. .+..+++|+.
T Consensus 88 -------------------------------------------------~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 88 -------------------------------------------------PDLTELILTNNSLV-ELGDLDPLASLKSLTY 117 (176)
T ss_dssp -------------------------------------------------TTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred -------------------------------------------------CCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence 37899999999986 4555 7888999999
Q ss_pred EECcccccccCCCC----CCCCCCCCCEEECCCCcCC
Q 004005 628 LNLSHNNLTGSIPS----TFSNLKHVESLDLSNNKLN 660 (779)
Q Consensus 628 L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~ 660 (779)
|++++|+++. .|. .+..+++|+.||+++|.+.
T Consensus 118 L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 118 LCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999984 455 3888999999999999875
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=6.8e-13 Score=122.73 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=87.7
Q ss_pred ceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcC
Q 004005 580 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 659 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 659 (779)
..+++....+..++.. .++.|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|++
T Consensus 15 ~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 3455555556555543 347889999999999887788888999999999999999877777788899999999999999
Q ss_pred CCCCcccccCCCCCcEEeccCCcCcccCCC
Q 004005 660 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 660 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
.+..+..|..+++|++|++++|++.|.++.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 876666688899999999999999887653
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=3.2e-11 Score=128.15 Aligned_cols=299 Identities=10% Similarity=0.162 Sum_probs=155.4
Q ss_pred ccCccccCCC-CCCEEEccCCcCccccchhhhhCCCCCCEEEccCcc---cCccCcccCCCCCCCCEEEccCCcCCccCC
Q 004005 296 SIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN---LQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 371 (779)
Q Consensus 296 ~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 371 (779)
....+|.+++ .|+.+.+..+ ++ .+....|.+|.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.+..
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 3344566653 4777777544 43 5566666667777777666542 44455556666666666555443 333444
Q ss_pred ccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEccCCcccCCcCcccCCCCCCcEEEccCCcCccCCCCccCcccc
Q 004005 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 451 (779)
Q Consensus 372 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 451 (779)
.+|..+.+|+.+.+..+ +.......|..+.+|+.+.+.++ +..+...+|.+ ..|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~--------------- 192 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK--------------- 192 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT---------------
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc---------------
Confidence 55666666666666433 22233445555555555555443 22222233332 34454444332
Q ss_pred cEEEccCcccccccCcccccCCCCccEEeccCccCCCccCcc-------------ccCCCCCCEEEccCCcccccccccc
Q 004005 452 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW-------------VDGLSQLSHLILGHNNLEGEVSVQL 518 (779)
Q Consensus 452 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~l 518 (779)
. ..+...+|.+|..++................ +.....+..+.+.. .++.....+|
T Consensus 193 --------~--~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF 261 (394)
T 4gt6_A 193 --------V--TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAF 261 (394)
T ss_dssp --------C--CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTT
T ss_pred --------c--cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEccccee
Confidence 1 1223333555555555544433222111000 11122233333322 2222344556
Q ss_pred cCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccc
Q 004005 519 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVL 598 (779)
Q Consensus 519 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (779)
.++..|+.+.+.++.. .....+|..+.
T Consensus 262 ~~c~~L~~i~lp~~~~-~I~~~aF~~c~---------------------------------------------------- 288 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV-SIGTGAFMNCP---------------------------------------------------- 288 (394)
T ss_dssp TTCSSCCEEECCTTCC-EECTTTTTTCT----------------------------------------------------
T ss_pred eecccccEEecccccc-eecCccccccc----------------------------------------------------
Confidence 6667777766654422 12223333322
Q ss_pred cCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005 599 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678 (779)
Q Consensus 599 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 678 (779)
.|+.+++. +.++.....+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++
T Consensus 289 -~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 289 -ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp -TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred -ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 46666664 3444455566777777777777654 55566667777777777777544 55556667777777777777
Q ss_pred cCCcC
Q 004005 679 AYNNL 683 (779)
Q Consensus 679 ~~N~l 683 (779)
.++..
T Consensus 365 ~~~~~ 369 (394)
T 4gt6_A 365 SGSRS 369 (394)
T ss_dssp SSCHH
T ss_pred CCcee
Confidence 76643
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.5e-12 Score=120.34 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=97.7
Q ss_pred cceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccC
Q 004005 601 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 680 (779)
Q Consensus 601 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 680 (779)
-+.+++++|++. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 5777665 7999999999999988899999999999999999999987777789999999999999
Q ss_pred CcCcccCCCCccccccCCcccccCCCCCCCCC
Q 004005 681 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 681 N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
|+++...+..+..+.++..+.+.+|++.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997777668889999999999999999985
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=2.3e-15 Score=143.36 Aligned_cols=154 Identities=25% Similarity=0.315 Sum_probs=105.7
Q ss_pred cCCCCccEEeccCccCCCccCc------cccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCccccc
Q 004005 471 FNCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 544 (779)
Q Consensus 471 ~~~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 544 (779)
.....++.++++.+.+.+..|. .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++. +|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc
Confidence 3345566666666666655554 67778888888888888875 44 67777888888888887762 3322211
Q ss_pred CcccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCC
Q 004005 545 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 624 (779)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 624 (779)
+++|++|++++|++++ +| .+..+++
T Consensus 92 -----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 92 -----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp -----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred -----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 2367888888888875 34 5777788
Q ss_pred CCEEECcccccccCCC-CCCCCCCCCCEEECCCCcCCCCCccc----------ccCCCCCcEEeccCCcCc
Q 004005 625 IQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLS 684 (779)
Q Consensus 625 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~l~~N~l~ 684 (779)
|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888874332 46777888888888888887655542 66778888776 66665
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1.6e-14 Score=137.39 Aligned_cols=138 Identities=23% Similarity=0.241 Sum_probs=114.7
Q ss_pred ccCCCCCCEEEccCCcccccccc------cccCCCCCCEEEccCCcCCCCCCcccccCcccccccCCCCCCcchhhhhhc
Q 004005 494 VDGLSQLSHLILGHNNLEGEVSV------QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 567 (779)
Q Consensus 494 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (779)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 44456777777888877776665 88999999999999999986 33 4433
Q ss_pred ccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEECcccccccCCCCCCCCCC
Q 004005 568 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 647 (779)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 647 (779)
+++|++|++++|+++ .+|..+..+++|++|++++|++++. | .+..++
T Consensus 69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 347999999999998 6788888889999999999999964 4 688899
Q ss_pred CCCEEECCCCcCCCCCc-ccccCCCCCcEEeccCCcCcccCCC
Q 004005 648 HVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIPE 689 (779)
Q Consensus 648 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~ 689 (779)
+|++|++++|++.+..+ ..+..+++|++|++++|++++.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999985443 5788999999999999999988775
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=5.7e-12 Score=131.66 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=92.7
Q ss_pred CcceEEccC-CcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEec
Q 004005 600 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 678 (779)
Q Consensus 600 ~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 678 (779)
+|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 699999996 999988888999999999999999999999999999999999999999999977766776666 999999
Q ss_pred cCCcCcccCC-CCccccccCCcccccCCCCCCCCC
Q 004005 679 AYNNLSGEIP-EWKAQFATFNESSYEGNTFLCGLP 712 (779)
Q Consensus 679 ~~N~l~~~~p-~~~~~~~~~~~~~~~~n~~~c~~~ 712 (779)
++|++.|.|+ .|+..+.......+..+.+.|..+
T Consensus 111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 9999999877 334444333444455566777654
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=1.1e-09 Score=115.81 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=81.9
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+..++.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|..+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~--- 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS--- 286 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT---
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc---
Confidence 555556666655433 33344455566666666666554 44344455666666666666433 3322333333322
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 629 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 629 (779)
+|+.+++.++.++.+...+|.++.+|+.+.
T Consensus 287 --------------------------------------------------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 287 --------------------------------------------------NLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp --------------------------------------------------TCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------ccccccccccccceehhhhhcCCCCCCEEE
Confidence 566666666666655556677777777777
Q ss_pred CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCC
Q 004005 630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 671 (779)
Q Consensus 630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 671 (779)
|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+..
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 7644 55555667777777777777544 5545555565543
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=9.3e-10 Score=116.29 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=91.3
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCcCCCCCCcccccCcccc
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 549 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 549 (779)
+..+..+..+.+..... .....++..+.+|+.+.+..+ ++.....++.++..|+.+.+..+ ++.....+|..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~--- 263 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT--- 263 (379)
T ss_dssp CCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT---
T ss_pred cccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee---
Confidence 34445555555543322 234455666677777777554 33344556667777777777654 3333333443332
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccccCCCCCCEEE
Q 004005 550 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 629 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 629 (779)
.|+.+++..+ +......+|.++.+|+.+.
T Consensus 264 --------------------------------------------------~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 264 --------------------------------------------------ALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp --------------------------------------------------TCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------hhcccccccc-ceecccccccccccccccc
Confidence 4566666443 4434455677777777777
Q ss_pred CcccccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCC
Q 004005 630 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 681 (779)
Q Consensus 630 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 681 (779)
+.++.++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 7777776666677777777777777644 55555567777777777766543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.8e-11 Score=127.80 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=97.7
Q ss_pred ceEEccCC-cccccCcccccCCCCCCEEECcc-cccccCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEecc
Q 004005 602 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 679 (779)
Q Consensus 602 ~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 679 (779)
..++++++ +++ .+|. +..+++|++|+|++ |+++++.+..|.++++|+.|+|++|+|++..|..|..+++|++|||+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45789998 888 5788 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005 680 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713 (779)
Q Consensus 680 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 713 (779)
+|+|++..+..+..+. +..+.+.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999977666665554 88999999999999964
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=7.4e-12 Score=130.84 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=68.3
Q ss_pred CCCCEEEccCCcCccccchhhhhCCCCCCEEEccCcccCccCcccC-----CCCCCCCEEEccCCcCCcc----CCcccc
Q 004005 305 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEGNRFVGE----IPQSLS 375 (779)
Q Consensus 305 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~ 375 (779)
++|+.|++++|.+.+.....+...+++|++|++++|.+.......+ ...++|++|++++|.++.. ++.++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555555555555433333333334455666666665543322222 1345566666666665432 222334
Q ss_pred CCCCCCEEEccCCCCCCCc----CccccCCCCCcEEEccCCcccCC----cCcccCCCCCCcEEEccCCcCc
Q 004005 376 KCSSLEGLYLNNNSLLGKI----PRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNIS 439 (779)
Q Consensus 376 ~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 439 (779)
.+++|++|++++|.+.+.. +..+...++|++|++++|.+++. +...+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5566666666666654321 23344455666666666665532 1222334556666666666654
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=4.5e-12 Score=132.51 Aligned_cols=136 Identities=20% Similarity=0.111 Sum_probs=67.5
Q ss_pred CccCEEEccCCcCCCCCCccccccCCCCcEEECCCCCCCcccCccc-----cCCCCCCEEEccCCcCccccchhh---hh
Q 004005 256 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGEIPEHL---AV 327 (779)
Q Consensus 256 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~~~~~---~~ 327 (779)
++|++|++++|.+++.....+...+++|+.|++++|.++......+ ...++|++|++++|.++......+ ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4666677776666533333333334566666666666654333222 234566666666666652211111 12
Q ss_pred CCCCCCEEEccCcccCccC----cccCCCCCCCCEEEccCCcCCccC----CccccCCCCCCEEEccCCCCC
Q 004005 328 GCVNLQFLALSNNNLQGHL----FSRNFNLTNLQWLQLEGNRFVGEI----PQSLSKCSSLEGLYLNNNSLL 391 (779)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~ 391 (779)
..++|++|++++|.+.+.. ...+...++|++|++++|.++... ..++...++|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3555666666666554322 223334455555555555554321 122333455555555555544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=4.9e-09 Score=97.67 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=87.9
Q ss_pred chHHhhcCCCCcEEeCCCc-ccCCCCCCcccccccCCCCCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccC
Q 004005 45 LQIISESMPSLKYLSLSYY-TLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTG 119 (779)
Q Consensus 45 ~~~l~~~l~~L~~L~Ls~~-~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 119 (779)
...+. ..++|++|+|++| .+++.+...+.+++...++|++|+|++|.+.+. +...+...++|++|+|++|.+.+
T Consensus 29 ~~~l~-~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQN-NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHT-TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHh-cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34455 7788888888888 886666666777777788888888888888654 34556667888888888888763
Q ss_pred C----CCcccccCCCCCCEEEc--cCccccCcC---CcccccCCCCCcEEEccCCcccee
Q 004005 120 S----ISSSPLVHLTSIEELML--SNNYFQIPI---SLEPLFNYSRLKIFNAENNEIKAE 170 (779)
Q Consensus 120 ~----l~~~~l~~l~~L~~L~l--~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~ 170 (779)
. +.. .+...+.|++|++ ++|.+.... ....+...+.|++|++++|.+...
T Consensus 108 ~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 108 SGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 2 333 5677788888888 778776321 112455667888888888887643
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=3e-08 Score=102.44 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=80.8
Q ss_pred cCCCCcEEeCCCcccCC-----CCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCcccCCCCccc
Q 004005 51 SMPSLKYLSLSYYTLGT-----NSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSP 125 (779)
Q Consensus 51 ~l~~L~~L~Ls~~~l~~-----~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 125 (779)
.+++|+.|.+....... .....++..+..+++|+.|+|++|.-. .++. +. +++|++|++..|.+...... .
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~-~ 212 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE-D 212 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH-H
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH-H
Confidence 56677777775443211 112234445566677777777666211 1222 32 67777777766655422111 1
Q ss_pred c--cCCCCCCEEEccC--ccccCcCCc----ccc--cCCCCCcEEEccCCccceeecccccccCCcccccEEecCCCCCC
Q 004005 126 L--VHLTSIEELMLSN--NYFQIPISL----EPL--FNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGD 195 (779)
Q Consensus 126 l--~~l~~L~~L~l~~--n~~~~~~~~----~~l--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 195 (779)
+ ..+++|++|+|+. +...+.... ..+ ..+++|++|++.+|.+.+.........
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------- 275 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------- 275 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-----------------
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-----------------
Confidence 2 2567777777642 111111000 011 235666777666666553221111111
Q ss_pred CCCCchhhcCCCCccEEEccCccCcccCChhhh---hcCCCCcEEEcCCCcCcC
Q 004005 196 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLL---ENNTKLETLFLVNDSLAG 246 (779)
Q Consensus 196 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 246 (779)
..+++|++|+|+.|.+.+..+..+. ..+++|+.|++++|.+..
T Consensus 276 --------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 276 --------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp --------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred --------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1234566666666655543332222 235666666666665543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=1.3e-08 Score=105.28 Aligned_cols=162 Identities=16% Similarity=0.143 Sum_probs=93.5
Q ss_pred ccCCCCccEEeccCccCCCccCccccCCCCCCEEEccCCccccccccccc--CCCCCCEEEccCC--cCCCCCCcccccC
Q 004005 470 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC--ELNQLQLLDLSNN--NLHGPIPPCFDNT 545 (779)
Q Consensus 470 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n--~l~~~~~~~~~~~ 545 (779)
+..+|+|+.|++++|.-. ..+. +. +++|+.|++..|.+.......+. .+++|+.|+|+.+ ...+.. .+..+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l 242 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF 242 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence 456788888888877322 1222 33 68899999988887654444443 6889999888632 211100 00000
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceeeeeeccceeeeccccccCcceEEccCCcccccCcccc---cCC
Q 004005 546 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI---GNL 622 (779)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l 622 (779)
........+++|+.|+|++|.+.+..+..+ ..+
T Consensus 243 --------------------------------------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~ 278 (362)
T 2ra8_A 243 --------------------------------------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278 (362)
T ss_dssp --------------------------------------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred --------------------------------------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence 000111224578888888888764333333 246
Q ss_pred CCCCEEECcccccccC----CCCCCCCCCCCCEEECCCCcCCCCCcccccC-CCCCcEEeccCCc
Q 004005 623 TRIQTLNLSHNNLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNN 682 (779)
Q Consensus 623 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 682 (779)
++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7788888888877652 2333455677888888888776433333332 2 2456666665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=4.8e-09 Score=97.74 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=90.4
Q ss_pred CCCCCCCCCEEeCCCC-cccccccccccccc----cchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEec
Q 004005 14 GFPHFKSLEHFDMDFT-RIALNTSFIALNTS----FLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYI 88 (779)
Q Consensus 14 ~~~~l~~L~~L~L~~~-~~~~~~~~~~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L 88 (779)
.+.+.+.|++|+|++| . +... +...+. ..++|++|+|++|.+++.+...+.+.+...+.|++|+|
T Consensus 31 ~l~~~~~L~~L~L~~n~~---------i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMN---------IPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHTTCTTCCEEECTTCTT---------CCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHhcCCCCCEEEecCCCC---------CCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 4567888999999988 7 4432 334455 67889999999999877666677777888888999999
Q ss_pred cCCCCCCC----cchhhcCCCCCCEEEc--CCCcccCC----CCcccccCCCCCCEEEccCcccc
Q 004005 89 ASNDLRGS----LPWCMANMTSLRILDV--SSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQ 143 (779)
Q Consensus 89 ~~~~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----l~~~~l~~l~~L~~L~l~~n~~~ 143 (779)
++|.+.+. +..++...++|++|++ ++|.+... +.. .+...++|++|++++|.+.
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 99988764 4566778888999999 77887632 333 5666788999999988775
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=2.6e-07 Score=90.13 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=53.5
Q ss_pred hcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCCCCCCcchhhcCCC--CCCEEEcCCCcccCCCCc----
Q 004005 50 ESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASNDLRGSLPWCMANMT--SLRILDVSSNQLTGSISS---- 123 (779)
Q Consensus 50 ~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~l~~---- 123 (779)
+.+++|+.|+|++|.++.+ ..+|..+..+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 3677888888888877432 24555666777788888887777654 2233333 777777777777655552
Q ss_pred --ccccCCCCCCEEE
Q 004005 124 --SPLVHLTSIEELM 136 (779)
Q Consensus 124 --~~l~~l~~L~~L~ 136 (779)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 1356667776664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=1.9e-06 Score=84.04 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=33.1
Q ss_pred CCCCCCEEECcccccccC--CCCCCCCCCCCCEEECCCCcCCCCCcccccCCC--CCcEEeccCCcCcccCC
Q 004005 621 NLTRIQTLNLSHNNLTGS--IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK--TLEVFSVAYNNLSGEIP 688 (779)
Q Consensus 621 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p 688 (779)
++++|+.|+|++|+|+++ +|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345555555555555542 223344555555555555555533 2222222 56666666666555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=2e-06 Score=77.40 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=58.7
Q ss_pred CCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccCCC-CCCCcchhhcCC----CCCCEEEcCCCc-ccCCCCcccc
Q 004005 53 PSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIASND-LRGSLPWCMANM----TSLRILDVSSNQ-LTGSISSSPL 126 (779)
Q Consensus 53 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~l~~~~l 126 (779)
..|+.||+++|.+++.+.. .+..+++|++|+|++|. +++..-..++.+ ++|++|++++|. +++.--. .+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence 4688888888887554333 45678888888888884 666555566664 478888888875 5532111 46
Q ss_pred cCCCCCCEEEccCcc
Q 004005 127 VHLTSIEELMLSNNY 141 (779)
Q Consensus 127 ~~l~~L~~L~l~~n~ 141 (779)
.++++|++|+++++.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 778888888888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=4.1e-06 Score=75.39 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=66.4
Q ss_pred cccccccCCCCCCEEeccCCCCCCCcchhhcCCCCCCEEEcCCCc-ccCCCCcccccCC----CCCCEEEccCcc-ccCc
Q 004005 72 TLDQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ-LTGSISSSPLVHL----TSIEELMLSNNY-FQIP 145 (779)
Q Consensus 72 ~l~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~l~~l----~~L~~L~l~~n~-~~~~ 145 (779)
.+|.....-.+|++||+++|.+++..-..+.+|++|++|+|++|. +++.--. .+..+ ++|++|++++|. ++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD- 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTD- 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCH-
Confidence 445433334689999999999988877888999999999999996 5421111 24443 469999999985 653
Q ss_pred CCcccccCCCCCcEEEccCCc
Q 004005 146 ISLEPLFNYSRLKIFNAENNE 166 (779)
Q Consensus 146 ~~~~~l~~l~~L~~L~l~~~~ 166 (779)
.....+..+++|++|+++++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 233456678888888888775
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.75 E-value=2.3e-05 Score=67.42 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred EEECcccccc-cCCCCCCCCCCCCCEEECCCCcCCCCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCC
Q 004005 627 TLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGN 705 (779)
Q Consensus 627 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n 705 (779)
.++-+++.++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.|.+.. .++..|... +
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l--~~l~~wl~~----~ 83 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL--VPLRAWLAG----R 83 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG--HHHHHHHHT----S
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc--HHHHHHHHh----C
Confidence 5666666665 23343222 3578888888888877777888889999999999999987652 222222111 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004005 706 TFLCGLPLPICRSPATMPEASIGNEQDD 733 (779)
Q Consensus 706 ~~~c~~~l~~c~~~~~~~~~~~~~~~~~ 733 (779)
+..-......|..|....++.+.+....
T Consensus 84 ~~~~~~~~~~C~~P~~l~g~~l~~l~~~ 111 (130)
T 3rfe_A 84 PERAPYRDLRCVAPPALRGRLLPYLAED 111 (130)
T ss_dssp SCSGGGTTCBCCBSTTTTTCBGGGCCHH
T ss_pred cccccccCcEeCcChHHcCCCcccCCHH
Confidence 0000011124888888888766555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.73 E-value=9e-06 Score=74.68 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=80.7
Q ss_pred cCCCCcEEeCCCc-ccCCCCCCcccccccCCCCCCEEeccCCCCCCC----cchhhcCCCCCCEEEcCCCcccCC----C
Q 004005 51 SMPSLKYLSLSYY-TLGTNSSGTLDQGLCSLVHLQELYIASNDLRGS----LPWCMANMTSLRILDVSSNQLTGS----I 121 (779)
Q Consensus 51 ~l~~L~~L~Ls~~-~l~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----l 121 (779)
.-+.|+.|+|+++ .+++.+...+.+++..-+.|++|+|++|.+.+. +.+++..-+.|++|+|++|++.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 5678888888875 787666667778888888888888888888654 445566778888888888887632 2
Q ss_pred CcccccCCCCCCEEEccCcc---ccCc---CCcccccCCCCCcEEEccCCccc
Q 004005 122 SSSPLVHLTSIEELMLSNNY---FQIP---ISLEPLFNYSRLKIFNAENNEIK 168 (779)
Q Consensus 122 ~~~~l~~l~~L~~L~l~~n~---~~~~---~~~~~l~~l~~L~~L~l~~~~l~ 168 (779)
.. ++..-+.|++|+++++. +... .-...+...+.|+.|+++.+.+.
T Consensus 119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 22 45556678888887653 2211 01124566678888888877654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=1.1e-05 Score=74.00 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=73.4
Q ss_pred CCCCCCCEEeCCCC-ccccccccccccc----ccchHHhhcCCCCcEEeCCCcccCCCCCCcccccccCCCCCCEEeccC
Q 004005 16 PHFKSLEHFDMDFT-RIALNTSFIALNT----SFLQIISESMPSLKYLSLSYYTLGTNSSGTLDQGLCSLVHLQELYIAS 90 (779)
Q Consensus 16 ~~l~~L~~L~L~~~-~~~~~~~~~~~~~----~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~l~~~l~~l~~L~~L~L~~ 90 (779)
.+-+.|++|+|+++ . +.. .+.+.+. .-++|+.|+|++|.+++.+...+.+++..-+.|++|+|++
T Consensus 38 ~~n~~L~~L~L~~nn~---------igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR---------VSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp TTCSSCCEEECTTCCS---------SCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred hcCCCccEEECCCCCC---------CCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 34567777777764 4 322 2344555 5567777777777777777777777777777777777777
Q ss_pred CCCCCC----cchhhcCCCCCCEEEcCCC---cccC----CCCcccccCCCCCCEEEccCccc
Q 004005 91 NDLRGS----LPWCMANMTSLRILDVSSN---QLTG----SISSSPLVHLTSIEELMLSNNYF 142 (779)
Q Consensus 91 ~~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~----~l~~~~l~~l~~L~~L~l~~n~~ 142 (779)
|.|++. +.+++..-+.|++|+|++| .+.. .+.. ++..-+.|++|+++.+.+
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 777654 3344555667777777654 2221 1222 455566777777776643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.31 E-value=0.00022 Score=61.17 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=52.0
Q ss_pred CEEECCCCcCC-CCCcccccCCCCCcEEeccCCcCcccCCCCccccccCCcccccCCCCCCCCCC
Q 004005 650 ESLDLSNNKLN-GKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 713 (779)
Q Consensus 650 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l 713 (779)
..++.+++.++ ..+|..+ ..+|+.|+|++|.|+...+..|..+..+..+.+.+|||.|+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 48999999997 3556432 34799999999999987778888899999999999999999976
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.50 E-value=18 Score=28.60 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=15.8
Q ss_pred ccccCCCCCCEEEccCCCCCCCcCccccCCCCCcEEEcc
Q 004005 372 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 410 (779)
Q Consensus 372 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (779)
.+|.+|.+|+.+.+..+ ++.+...+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444332 222333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.80 E-value=21 Score=28.13 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=33.5
Q ss_pred CcccccCcccccCCCCCCEEECcccccccCCCCCCCCCCCCCEEECCCC
Q 004005 609 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 657 (779)
Q Consensus 609 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 657 (779)
..++.+...+|.++.+|+++.+..+ ++.+-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555667888888888888764 44466677888888888877654
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=22.21 E-value=35 Score=21.24 Aligned_cols=7 Identities=0% Similarity=-0.064 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 004005 748 SYVIVIF 754 (779)
Q Consensus 748 ~~~~~~~ 754 (779)
+.++.+.
T Consensus 19 G~v~gv~ 25 (38)
T 2k1k_A 19 GLLLGAA 25 (38)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!